- galaxy-dev - lists.galaxyproject.org

[hg] galaxy 1481: Upgraded twill to 0.9.
by greg＠scofield.bx.psu.edu 27 Aug '08

27 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/ed448639d90e changeset: 1481:ed448639d90e user: Nate Coraor <nate(a)bx.psu.edu> date: Tue Aug 26 10:39:47 2008 -0400 description: Upgraded twill to 0.9. 1 file(s) affected in this change: eggs.ini diffs (21 lines): diff -r 6de3006c62b3 -r ed448639d90e eggs.ini --- a/eggs.ini Mon Aug 25 15:28:57 2008 -0400 +++ b/eggs.ini Tue Aug 26 10:39:47 2008 -0400 @@ -41,7 +41,7 @@ simplejson = 1.5 SQLAlchemy = 0.3.11 Tempita = 0.1 -twill = 0.8.3 +twill = 0.9 WebError = 0.8a WebHelpers = 0.2 WebOb = 0.8.5 @@ -86,7 +86,7 @@ simplejson = http://cheeseshop.python.org/packages/source/s/simplejson/simplejson-1.5.ta… SQLAlchemy = http://pypi.python.org/packages/source/S/SQLAlchemy/SQLAlchemy-0.3.11.tar.gz Tempita = http://pypi.python.org/packages/source/T/Tempita/Tempita-0.1.tar.gz -twill = http://darcs.idyll.org/~t/projects/twill-0.8.3.tar.gz +twill = http://darcs.idyll.org/~t/projects/twill-0.9.tar.gz WebError = http://pypi.python.org/packages/source/W/WebError/WebError-0.8a.tar.gz WebHelpers = http://pypi.python.org/packages/source/W/WebHelpers/WebHelpers-0.2.tar.gz WebOb = http://pypi.python.org/packages/source/W/WebOb/WebOb-0.8.5.tar.gz

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[hg] galaxy 1480: dbkey must be set after _metadata column is in...
by greg＠scofield.bx.psu.edu 27 Aug '08

27 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/6de3006c62b3 changeset: 1480:6de3006c62b3 user: Dan Blankenberg <dan(a)bx.psu.edu> date: Mon Aug 25 15:28:57 2008 -0400 description: dbkey must be set after _metadata column is initialized in the init of HDA, or else the dbkey is clobered. 1 file(s) affected in this change: lib/galaxy/model/__init__.py diffs (14 lines): diff -r b671c301674a -r 6de3006c62b3 lib/galaxy/model/__init__.py --- a/lib/galaxy/model/__init__.py Fri Aug 22 17:47:43 2008 -0400 +++ b/lib/galaxy/model/__init__.py Mon Aug 25 15:28:57 2008 -0400 @@ -112,9 +112,9 @@ self.blurb = blurb self.peek = peek self.extension = extension - self.dbkey = dbkey self.designation = designation self._metadata = metadata or dict() + self.dbkey = dbkey self.deleted = deleted self.visible = visible # Relationships

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[hg] galaxy 1479: Internet explorer fixes and support -- popup m...
by greg＠scofield.bx.psu.edu 27 Aug '08

27 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/b671c301674a changeset: 1479:b671c301674a user: James Taylor <james(a)jamestaylor.org> date: Fri Aug 22 17:47:43 2008 -0400 description: Internet explorer fixes and support -- popup menus and dialogs work better on IE6+, workflow editor works on IE7 (using excanvas). It actually *nearly* works on IE6 but there are some layout problems that are probably not worth wasting time on. If any IE users can test this that would be great! 13 file(s) affected in this change: static/june_2007_style/base.css.tmpl static/june_2007_style/blue/base.css static/june_2007_style/blue/panel_layout.css static/june_2007_style/panel_layout.css.tmpl static/scripts/galaxy.base.js static/scripts/galaxy.panels.js static/scripts/galaxy.ui.scrollPanel.js static/scripts/galaxy.workflow_editor.canvas.js static/scripts/packed/galaxy.base.js static/scripts/packed/galaxy.panels.js static/scripts/packed/galaxy.workflow_editor.canvas.js templates/workflow/editor.mako templates/workflow/index.mako diffs (648 lines): diff -r 6eac08f7edcf -r b671c301674a static/june_2007_style/base.css.tmpl --- a/static/june_2007_style/base.css.tmpl Fri Aug 22 17:44:32 2008 -0400 +++ b/static/june_2007_style/base.css.tmpl Fri Aug 22 17:47:43 2008 -0400 @@ -358,7 +358,7 @@ font-weight: bold; display: inline-block; cursor: pointer; - margin: -1px; padding: 2px; + padding: 2px; border: solid #aaaaaa 1px; padding-right: 0.5em; padding-left: 0.5em; diff -r 6eac08f7edcf -r b671c301674a static/june_2007_style/blue/base.css --- a/static/june_2007_style/blue/base.css Fri Aug 22 17:44:32 2008 -0400 +++ b/static/june_2007_style/blue/base.css Fri Aug 22 17:47:43 2008 -0400 @@ -356,7 +356,7 @@ font-weight: bold; display: inline-block; cursor: pointer; - margin: -1px; padding: 2px; + padding: 2px; border: solid #aaaaaa 1px; padding-right: 0.5em; padding-left: 0.5em; diff -r 6eac08f7edcf -r b671c301674a static/june_2007_style/blue/panel_layout.css --- a/static/june_2007_style/blue/panel_layout.css Fri Aug 22 17:44:32 2008 -0400 +++ b/static/june_2007_style/blue/panel_layout.css Fri Aug 22 17:47:43 2008 -0400 @@ -244,14 +244,6 @@ top: 0; left: 0; width: 100%; height: 100%; z-index: 20000; } -#overlay-inner { - width: 100%; height: 100%; - background-color:#FFF; - filter:alpha(opacity=75); - -moz-opacity: 0.75; - opacity: 0.75; - z-index: 20000; -} .dialog-box-container { position: relative; @@ -259,15 +251,11 @@ margin-right: auto; margin-left: auto; } -.dialog-box-underlay { - position: absolute; - left: -1em; - right: -1em; - top: -1em; - bottom: -1em; - opacity: 0.5; - background: black; - z-index: -1; + +.dialog-box-wrapper { + position: relative; + padding: 1em; + background-color: rgba(0,0,0,0.5); -moz-border-radius: 1em; -webkit-border-radius: 1em; } diff -r 6eac08f7edcf -r b671c301674a static/june_2007_style/panel_layout.css.tmpl --- a/static/june_2007_style/panel_layout.css.tmpl Fri Aug 22 17:44:32 2008 -0400 +++ b/static/june_2007_style/panel_layout.css.tmpl Fri Aug 22 17:47:43 2008 -0400 @@ -244,30 +244,17 @@ z-index: 20000; } -#overlay-inner { - width: 100%; height: 100%; - background-color:#FFF; - filter:alpha(opacity=75); - -moz-opacity: 0.75; - opacity: 0.75; - z-index: 20000; -} - .dialog-box-container { position: relative; margin-top: 80px; margin-right: auto; margin-left: auto; } -.dialog-box-underlay { - position: absolute; - left: -1em; - right: -1em; - top: -1em; - bottom: -1em; - opacity: 0.5; - background: black; - z-index: -1; + +.dialog-box-wrapper { + position: relative; + padding: 1em; + background-color: rgba(0,0,0,0.5); -moz-border-radius: 1em; -webkit-border-radius: 1em; } diff -r 6eac08f7edcf -r b671c301674a static/scripts/galaxy.base.js --- a/static/scripts/galaxy.base.js Fri Aug 22 17:44:32 2008 -0400 +++ b/static/scripts/galaxy.base.js Fri Aug 22 17:47:43 2008 -0400 @@ -29,13 +29,10 @@ function ensure_popup_helper() { // And the helper below the popup menus if ( $( "#popup-helper" ).length == 0 ) { - var e = $("<div id='popup-helper' style='background: white; opacity: 0.00; top: 0; left: 0; width: 100%; height: 100%; position: absolute; z-index: 15000;'></div>"); - if ( $.browser.ie ) { - // Element will not capture drags in ie without nonzero opacity, - // but causes flashing in firefox with nonzero opacity - e.css( "opacity", "0.01" ); - } - e.appendTo("body").hide(); + $( "<div id='popup-helper'/>" ).css( { + background: 'white', opacity: 0, zIndex: 15000, + position: 'absolute', top: 0, left: 0, width: '100%', height: '100%' + } ).appendTo( "body" ).hide(); } } diff -r 6eac08f7edcf -r b671c301674a static/scripts/galaxy.panels.js --- a/static/scripts/galaxy.panels.js Fri Aug 22 17:44:32 2008 -0400 +++ b/static/scripts/galaxy.panels.js Fri Aug 22 17:47:43 2008 -0400 @@ -6,13 +6,10 @@ function ensure_dd_helper() { // Insert div that covers everything when dragging the borders if ( jq( "#DD-helper" ).length == 0 ) { - var e = jq("<div id='DD-helper' style='background: white; opacity: 0.00; top: 0; left: 0; width: 100%; height: 100%; position: absolute; z-index: 9000;'></div>"); - if ( jq.browser.ie ) { - // Element will not capture drags in ie without nonzero opacity, - // but causes flashing in firefox with nonzero opacity - e.css( "opacity", "0.01" ); - } - e.appendTo("body").hide(); + $( "<div id='DD-helper'/>" ).css( { + background: 'white', opacity: 0, zIndex: 9000, + position: 'absolute', top: 0, left: 0, width: '100%', height: '100%' + } ).appendTo( "body" ).hide(); } } @@ -179,6 +176,46 @@ return { handle_minwidth_hint: handle_minwidth_hint }; }; +// Modal dialog boxes + +function hide_modal() { + $(".dialog-box-container" ).fadeOut( function() { $("#overlay").hide(); } ); +}; + +function show_modal( title, body, buttons, extra_buttons ) { + $( ".dialog-box" ).find( ".title" ).html( title ); + var b = $( ".dialog-box" ).find( ".buttons" ).html( "" ); + if ( buttons ) { + $.each( buttons, function( name, value ) { + b.append( $( '<button/>' ).text( name ).click( value ) ); + b.append( " " ); + }); + b.show(); + } else { + b.hide(); + } + var b = $( ".dialog-box" ).find( ".extra_buttons" ).html( "" ); + if ( extra_buttons ) { + $.each( extra_buttons, function( name, value ) { + b.append( $( '<button/>' ).text( name ).click( value ) ); + b.append( " " ); + }); + b.show(); + } else { + b.hide(); + } + if ( body == "progress" ) { + body = $( "<img src='../images/yui/rel_interstitial_loading.gif')' />" ); + } + $( ".dialog-box" ).find( ".body" ).html( body ); + if ( ! $(".dialog-box-container").is( ":visible" ) ) { + $("#overlay").show(); + $(".dialog-box-container").fadeIn() + } +}; + +// Popup -- is this up to date? + function make_popupmenu( button_element, options ) { var menu_element = $( "<div class='popupmenu'><div class='popupmenu-top'><div class='popupmenu-top-inner'/></div></div>" ).appendTo( "body" ); $.each( options, function( k, v ) { diff -r 6eac08f7edcf -r b671c301674a static/scripts/galaxy.ui.scrollPanel.js --- a/static/scripts/galaxy.ui.scrollPanel.js Fri Aug 22 17:44:32 2008 -0400 +++ b/static/scripts/galaxy.ui.scrollPanel.js Fri Aug 22 17:47:43 2008 -0400 @@ -18,7 +18,7 @@ element_w = element.width(), element_h = element.height(), moved = false, - close = 5, + close_dist = 5, nudge = 23, // Legal panel range p_min_x = - ( panel_w - viewport_w ), @@ -34,21 +34,21 @@ mouse_x = ui.position.left + instance.offset.click.left; mouse_y = ui.position.top + instance.offset.click.top; // Move it - if ( ( panel_pos.left < p_max_x ) && ( mouse_x - close < min_vis_x ) ) { + if ( ( panel_pos.left < p_max_x ) && ( mouse_x - close_dist < min_vis_x ) ) { var t = Math.min( nudge, p_max_x - panel_pos.left ); panel.css( "left", panel_pos.left + t ); moved = true; instance.offset.parent.left += t; ui.position.left -= t } - if ( ( ! moved ) && ( panel_pos.left > p_min_x ) && ( mouse_x + close > max_vis_x ) ) { + if ( ( ! moved ) && ( panel_pos.left > p_min_x ) && ( mouse_x + close_dist > max_vis_x ) ) { var t = Math.min( nudge, panel_pos.left - p_min_x ); panel.css( "left", panel_pos.left - t ); moved = true; instance.offset.parent.left -= t; ui.position.left += t; } - if ( ( ! moved ) && ( panel_pos.top < p_max_y ) && ( mouse_y - close < min_vis_y ) ) { + if ( ( ! moved ) && ( panel_pos.top < p_max_y ) && ( mouse_y - close_dist < min_vis_y ) ) { var t = Math.min( nudge, p_max_y - panel_pos.top ); panel.css( "top", panel_pos.top + t ); // Firefox sometimes moves by less, so we need to check. Yuck. @@ -57,7 +57,7 @@ ui.position.top -= amount_moved; moved = true; } - if ( ( ! moved ) && ( panel_pos.top > p_min_y ) && ( mouse_y + close > max_vis_y ) ) { + if ( ( ! moved ) && ( panel_pos.top > p_min_y ) && ( mouse_y + close_dist > max_vis_y ) ) { var t = Math.min( nudge, panel_pos.top - p_min_x ); panel.css( "top", ( panel_pos.top - t ) + "px" ); // Firefox sometimes moves by less, so we need to check. Yuck. diff -r 6eac08f7edcf -r b671c301674a static/scripts/galaxy.workflow_editor.canvas.js --- a/static/scripts/galaxy.workflow_editor.canvas.js Fri Aug 22 17:44:32 2008 -0400 +++ b/static/scripts/galaxy.workflow_editor.canvas.js Fri Aug 22 17:47:43 2008 -0400 @@ -32,15 +32,16 @@ this.datatype = datatype; } -OutputTerminal.prototype.__proto__ = Terminal.prototype; +OutputTerminal.prototype = new Terminal; function InputTerminal( element, datatypes ) { Terminal.call( this, element ); this.datatypes = datatypes; } -InputTerminal.prototype = { - __proto__: Terminal.prototype, +InputTerminal.prototype = new Terminal; + +$.extend( InputTerminal.prototype, { can_accept: function ( other ) { if ( this.connectors.length < 1 ) { for ( t in this.datatypes ) { @@ -53,7 +54,7 @@ } return false; } -} +}); function Connector( handle1, handle2 ) { this.canvas = null; @@ -81,6 +82,10 @@ var canvas_container = $("#canvas-container"); if ( ! this.canvas ) { this.canvas = document.createElement( "canvas" ); + // excanvas specific hack + if ( window.G_vmlCanvasManager ) { + G_vmlCanvasManager.initElement( this.canvas ); + } canvas_container.append( $(this.canvas) ); if ( this.dragging ) { this.canvas.style.zIndex = "300" } } @@ -182,14 +187,14 @@ t.remove(); }))) .bind( "mouseleave", function() { - $(this).fadeOut( "fast", function() { $(this).remove() } ) + $(this).remove(); }); // Position it and show t.css( { top: $(this).offset().top - 2, left: $(this).offset().left - t.width(), 'padding-right': $(this).width() } - ).fadeIn( "fast" ); + ).show(); } }, function() {} @@ -272,12 +277,12 @@ var node = this; var b = f.find( ".toolFormBody" ); b.find( "div" ).remove(); - var ibox = $("<div class='inputs'/>").appendTo( b ); + var ibox = $("<div class='inputs'></div>").appendTo( b ); $.each( data.data_inputs, function( i, input ) { - t = $("<div class='terminal input-terminal'></div>") + var t = $("<div class='terminal input-terminal'></div>"); node.enable_input_terminal( t, input.name, input.extensions ); - ibox.append( $("<div class='form-row dataRow input-data-row' name='" + input.name + "'>" + input.label + "</div></div>" ).prepend( t ) ); - }); + ibox.append( $("<div class='form-row dataRow input-data-row' name='" + input.name + "'>" + input.label + "</div>" ).prepend( t ) ); + }); if ( ( data.data_inputs.length > 0 ) && ( data.data_outputs.length > 0 ) ) { b.append( $( "<div class='rule'></div>" ) ); } @@ -305,8 +310,8 @@ } // Update input rows var old_body = el.find( "div.inputs" ); - var new_body = $("<div class='inputs'/>"); - old = old_body.find( "div.input-data-row") + var new_body = $("<div class='inputs'></div>"); + var old = old_body.find( "div.input-data-row") $.each( data.data_inputs, function( i, input ) { var t = $("<div class='terminal input-terminal'></div>"); node.enable_input_terminal( t, input.name, input.extensions ); @@ -322,7 +327,7 @@ $(this).remove(); }); // Append to new body - new_body.append( $("<div class='form-row dataRow input-data-row' name='" + input.name + "'>" + input.label + "</div></div>" ).prepend( t ) ); + new_body.append( $("<div class='form-row dataRow input-data-row' name='" + input.name + "'>" + input.label + "</div>" ).prepend( t ) ); }); old_body.replaceWith( new_body ); // Cleanup any leftover terminals @@ -468,13 +473,21 @@ f.append( b ) // Fix width to computed width // Now add floats - var buttons = $("<div class='buttons' style='float: right'></div>"); - buttons.append( $("<img src='../images/delete_icon.png' />").click( function() { + var buttons = $("<div class='buttons' style='float: right;'></div>"); + buttons.append( $("<img src='../images/delete_icon.png' />").click( function( e ) { node.destroy(); } ).hover( function() { $(this).attr( 'src', "../images/delete_icon_dark.png" ) }, function() { $(this).attr( 'src', "../images/delete_icon.png" ) } ) ); + // zIndex tracking for bring to front + zmax = $("#canvas-container").data( "zmax" ) + if ( ! zmax ) { + zmax = 0; + } + f.css( "zIndex", zmax + 1 ); + $("#canvas-container").data( "zmax", zmax + 1 ); + // Place inside container f.appendTo( "#canvas-container" ); // Position in container var o = $("#canvas-container").position(); @@ -494,13 +507,16 @@ // containment: $("#shim"), // grow: true, click: function( e, ui ) { - var element = $(this).data("draggable").element.get(0); - (function(p) { p.removeChild( element ); p.appendChild( element ) })(element.parentNode) + // Bring to front + zmax = $("#canvas-container").data( "zmax" ) + $(this).css( "zIndex", zmax + 1 ); + $("#canvas-container").data( "zmax", zmax + 1 ); + // Make active workflow.activate_node( node ); }, start: function( e, ui ) { workflow.activate_node( node ); - $(this).css( 'z-index', '1000' ); + $(this).css( 'z-index', $("#canvas-container").data( "zmax" ) + 1000 ); }, drag: function( e, ui ) { $(this).find( ".terminal" ).each( function() { @@ -508,9 +524,11 @@ }) }, stop: function( e, ui ) { - var element = $(this).data("draggable").element.get(0); - (function(p) { p.removeChild( element ); p.appendChild( element ) })(element.parentNode) - $(this).css( 'z-index', '100' ); + // Bring to front + zmax = $("#canvas-container").data( "zmax" ) + $(this).css( "zIndex", zmax + 1 ); + $("#canvas-container").data( "zmax", zmax + 1 ); + // Redraw $(this).find( ".terminal" ).each( function() { this.terminal.redraw(); }); diff -r 6eac08f7edcf -r b671c301674a static/scripts/packed/galaxy.base.js --- a/static/scripts/packed/galaxy.base.js Fri Aug 22 17:44:32 2008 -0400 +++ b/static/scripts/packed/galaxy.base.js Fri Aug 22 17:47:43 2008 -0400 @@ -1,1 +1,1 @@ -jQuery(document).ready(function(){jQuery("a[@confirm]").click(function(){return confirm(jQuery(this).attr("confirm"))});jQuery("div[@popupmenu]").each(function(){var B={};$(this).find("a").each(function(){var C=$(this).attr("confirm"),D=$(this).attr("href"),E=$(this).attr("target");B[$(this).text()]=function(){if(!C||confirm(C)){var F=window;if(E=="_parent"){F=window.parent}F.location=D}}});var A=$("#"+$(this).attr("popupmenu"));make_popupmenu(A,B);$(this).remove();A.show()})});function ensure_popup_helper(){if($("#popup-helper").length==0){var A=$("<div id='popup-helper' style='background: white; opacity: 0.00; top: 0; left: 0; width: 100%; height: 100%; position: absolute; z-index: 15000;'></div>");if($.browser.ie){A.css("opacity","0.01")}A.appendTo("body").hide()}}function make_popupmenu(D,B){ensure_popup_helper();var A=$("<div class='popupmenu'></div>").appendTo("body");$.each(B,function(G,F){$("<div class='popupmenu-item' />").html(G).click(F).appendTo(A)});var C=functi on(){$(A).unbind().hide();$("#popup-helper").unbind().hide()};var E=function(F){var G=$(D).offset();$("#popup-helper").mousedown(C).show();$(A).click(C).css({top:-1000}).show().css({top:F.pageY-2,left:F.pageX-2});return false};$(D).click(E)}; \ No newline at end of file +jQuery(document).ready(function(){jQuery("a[@confirm]").click(function(){return confirm(jQuery(this).attr("confirm"))});jQuery("div[@popupmenu]").each(function(){var B={};$(this).find("a").each(function(){var C=$(this).attr("confirm"),D=$(this).attr("href"),E=$(this).attr("target");B[$(this).text()]=function(){if(!C||confirm(C)){var F=window;if(E=="_parent"){F=window.parent}F.location=D}}});var A=$("#"+$(this).attr("popupmenu"));make_popupmenu(A,B);$(this).remove();A.show()})});function ensure_popup_helper(){if($("#popup-helper").length==0){$("<div id='popup-helper'/>").css({background:"white",opacity:0,zIndex:15000,position:"absolute",top:0,left:0,width:"100%",height:"100%"}).appendTo("body").hide()}}function make_popupmenu(D,B){ensure_popup_helper();var A=$("<div class='popupmenu'></div>").appendTo("body");$.each(B,function(G,F){$("<div class='popupmenu-item' />").html(G).click(F).appendTo(A)});var C=function(){$(A).unbind().hide();$("#popup-helper").unbind().hide()};var E =function(F){var G=$(D).offset();$("#popup-helper").mousedown(C).show();$(A).click(C).css({top:-1000}).show().css({top:F.pageY-2,left:F.pageX-2});return false};$(D).click(E)}; \ No newline at end of file diff -r 6eac08f7edcf -r b671c301674a static/scripts/packed/galaxy.panels.js --- a/static/scripts/packed/galaxy.panels.js Fri Aug 22 17:44:32 2008 -0400 +++ b/static/scripts/packed/galaxy.panels.js Fri Aug 22 17:47:43 2008 -0400 @@ -1,1 +1,1 @@ -var hidden_width=7;var border_tweak=9;var jq=jQuery;function ensure_dd_helper(){if(jq("#DD-helper").length==0){var A=jq("<div id='DD-helper' style='background: white; opacity: 0.00; top: 0; left: 0; width: 100%; height: 100%; position: absolute; z-index: 9000;'></div>");if(jq.browser.ie){A.css("opacity","0.01")}A.appendTo("body").hide()}}function make_left_panel(E,A,B){var D=false;var C=null;resize=function(F){var G=F;if(F<0){F=0}jq(E).css("width",F);jq(B).css("left",G);jq(A).css("left",F+7);if(document.recalc){document.recalc()}};toggle=function(){if(D){jq(B).removeClass("hover");jq(B).animate({left:C},"fast");jq(E).css("left",-C).show().animate({left:0},"fast",function(){resize(C);jq(B).removeClass("hidden")});D=false}else{C=jq(B).position().left;jq(A).css("left",hidden_width);if(document.recalc){document.recalc()}jq(B).removeClass("hover");jq(E).animate({left:-C},"fast");jq(B).animate({left:-1},"fast",function(){jq(this).addClass("hidden")});D=true}};jq(B).hover(function( ){jq(this).addClass("hover")},function(){jq(this).removeClass("hover")}).draggable({start:function(F,G){jq("#DD-helper").show()},stop:function(F,G){jq("#DD-helper").hide();return false},drag:function(F,G){x=G.position.left;x=Math.min(400,Math.max(100,x));if(D){jq(E).css("left",0);jq(B).removeClass("hidden");D=false}resize(x);G.position.left=x;G.position.top=$(this).data("draggable").originalPosition.top},click:function(){toggle()}}).find("div").show()}function make_right_panel(A,E,G){var I=false;var F=false;var C=null;var D=function(J){jq(A).css("width",J);jq(E).css("right",J+9);jq(G).css("right",J).css("left","");if(document.recalc){document.recalc()}};var H=function(){if(I){jq(G).removeClass("hover");jq(G).animate({right:C},"fast");jq(A).css("right",-C).show().animate({right:0},"fast",function(){D(C);jq(G).removeClass("hidden")});I=false}else{C=jq(document).width()-jq(G).position().left-border_tweak;jq(E).css("right",hidden_width+1);if(document.recalc){document.recalc()}jq (G).removeClass("hover");jq(A).animate({right:-C},"fast");jq(G).animate({right:-1},"fast",function(){jq(this).addClass("hidden")});I=true}F=false};var B=function(J){var K=jq(E).width()-(I?C:0);if(K<J){if(!I){H();F=true}}else{if(F){H();F=false}}};jq(G).hover(function(){jq(this).addClass("hover")},function(){jq(this).removeClass("hover")}).draggable({start:function(J,K){jq("#DD-helper").show()},stop:function(J,K){x=K.position.left;w=jq(window).width();x=Math.min(w-100,x);x=Math.max(w-400,x);D(w-x-border_tweak);jq("#DD-helper").hide();return false},click:function(){H()},drag:function(J,K){x=K.position.left;w=jq(window).width();x=Math.min(w-100,x);x=Math.max(w-400,x);if(I){jq(A).css("right",0);jq(G).removeClass("hidden");I=false}D(w-x-border_tweak);K.position.left=x;K.position.top=$(this).data("draggable").originalPosition.top}}).find("div").show();return{handle_minwidth_hint:B}}function make_popupmenu(D,B){var A=$("<div class='popupmenu'><div class='popupmenu-top'><div class='p opupmenu-top-inner'/></div></div>").appendTo("body");$.each(B,function(G,F){$("<div class='popupmenu-item' />").html(G).click(F).appendTo(A)});var C=function(){$(A).unbind().hide();$("#popup-helper").unbind().hide()};var E=function(){var F=$(D).offset();$("#popup-helper").mousedown(C).show();$(A).click(C).css({top:-1000}).show().css({top:F.top+$(D).height()+9,left:F.left+$(D).width()-$(A).width()})};$(D).click(E)}; \ No newline at end of file +var hidden_width=7;var border_tweak=9;var jq=jQuery;function ensure_dd_helper(){if(jq("#DD-helper").length==0){$("<div id='DD-helper'/>").css({background:"white",opacity:0,zIndex:9000,position:"absolute",top:0,left:0,width:"100%",height:"100%"}).appendTo("body").hide()}}function make_left_panel(E,A,B){var D=false;var C=null;resize=function(F){var G=F;if(F<0){F=0}jq(E).css("width",F);jq(B).css("left",G);jq(A).css("left",F+7);if(document.recalc){document.recalc()}};toggle=function(){if(D){jq(B).removeClass("hover");jq(B).animate({left:C},"fast");jq(E).css("left",-C).show().animate({left:0},"fast",function(){resize(C);jq(B).removeClass("hidden")});D=false}else{C=jq(B).position().left;jq(A).css("left",hidden_width);if(document.recalc){document.recalc()}jq(B).removeClass("hover");jq(E).animate({left:-C},"fast");jq(B).animate({left:-1},"fast",function(){jq(this).addClass("hidden")});D=true}};jq(B).hover(function(){jq(this).addClass("hover")},function(){jq(this).removeClass("hover" )}).draggable({start:function(F,G){jq("#DD-helper").show()},stop:function(F,G){jq("#DD-helper").hide();return false},drag:function(F,G){x=G.position.left;x=Math.min(400,Math.max(100,x));if(D){jq(E).css("left",0);jq(B).removeClass("hidden");D=false}resize(x);G.position.left=x;G.position.top=$(this).data("draggable").originalPosition.top},click:function(){toggle()}}).find("div").show()}function make_right_panel(A,E,G){var I=false;var F=false;var C=null;var D=function(J){jq(A).css("width",J);jq(E).css("right",J+9);jq(G).css("right",J).css("left","");if(document.recalc){document.recalc()}};var H=function(){if(I){jq(G).removeClass("hover");jq(G).animate({right:C},"fast");jq(A).css("right",-C).show().animate({right:0},"fast",function(){D(C);jq(G).removeClass("hidden")});I=false}else{C=jq(document).width()-jq(G).position().left-border_tweak;jq(E).css("right",hidden_width+1);if(document.recalc){document.recalc()}jq(G).removeClass("hover");jq(A).animate({right:-C},"fast");jq(G).anima te({right:-1},"fast",function(){jq(this).addClass("hidden")});I=true}F=false};var B=function(J){var K=jq(E).width()-(I?C:0);if(K<J){if(!I){H();F=true}}else{if(F){H();F=false}}};jq(G).hover(function(){jq(this).addClass("hover")},function(){jq(this).removeClass("hover")}).draggable({start:function(J,K){jq("#DD-helper").show()},stop:function(J,K){x=K.position.left;w=jq(window).width();x=Math.min(w-100,x);x=Math.max(w-400,x);D(w-x-border_tweak);jq("#DD-helper").hide();return false},click:function(){H()},drag:function(J,K){x=K.position.left;w=jq(window).width();x=Math.min(w-100,x);x=Math.max(w-400,x);if(I){jq(A).css("right",0);jq(G).removeClass("hidden");I=false}D(w-x-border_tweak);K.position.left=x;K.position.top=$(this).data("draggable").originalPosition.top}}).find("div").show();return{handle_minwidth_hint:B}}function hide_modal(){$(".dialog-box-container").fadeOut(function(){$("#overlay").hide()})}function show_modal(E,B,D,C){$(".dialog-box").find(".title").html(E);var A=$(". dialog-box").find(".buttons").html("");if(D){$.each(D,function(F,G){A.append($("<button/>").text(F).click(G));A.append(" ")});A.show()}else{A.hide()}var A=$(".dialog-box").find(".extra_buttons").html("");if(C){$.each(C,function(F,G){A.append($("<button/>").text(F).click(G));A.append(" ")});A.show()}else{A.hide()}if(B=="progress"){B=$("<img src='../images/yui/rel_interstitial_loading.gif')' />")}$(".dialog-box").find(".body").html(B);if(!$(".dialog-box-container").is(":visible")){$("#overlay").show();$(".dialog-box-container").fadeIn()}}function make_popupmenu(D,B){var A=$("<div class='popupmenu'><div class='popupmenu-top'><div class='popupmenu-top-inner'/></div></div>").appendTo("body");$.each(B,function(G,F){$("<div class='popupmenu-item' />").html(G).click(F).appendTo(A)});var C=function(){$(A).unbind().hide();$("#popup-helper").unbind().hide()};var E=function(){var F=$(D).offset();$("#popup-helper").mousedown(C).show();$(A).click(C).css({top:-1000}).show().css({top:F.top+ $(D).height()+9,left:F.left+$(D).width()-$(A).width()})};$(D).click(E)}; \ No newline at end of file diff -r 6eac08f7edcf -r b671c301674a static/scripts/packed/galaxy.workflow_editor.canvas.js --- a/static/scripts/packed/galaxy.workflow_editor.canvas.js Fri Aug 22 17:44:32 2008 -0400 +++ b/static/scripts/packed/galaxy.workflow_editor.canvas.js Fri Aug 22 17:47:43 2008 -0400 @@ -1,1 +1,1 @@ -function Terminal(A){this.element=A;this.connectors=[]}Terminal.prototype={connect:function(A){this.connectors.push(A);if(this.node){this.node.changed()}},disconnect:function(A){this.connectors.splice($.inArray(A,this.connectors),1);if(this.node){this.node.changed()}},redraw:function(){$.each(this.connectors,function(A,B){B.redraw()})},destroy:function(){$.each(this.connectors.slice(),function(A,B){B.destroy()})}};function OutputTerminal(A,B){Terminal.call(this,A);this.datatype=B}OutputTerminal.prototype.__proto__=Terminal.prototype;function InputTerminal(A,B){Terminal.call(this,A);this.datatypes=B}InputTerminal.prototype={__proto__:Terminal.prototype,can_accept:function(A){if(this.connectors.length<1){for(t in this.datatypes){if(A.datatype=="input"){return true}if(issubtype(A.datatype,this.datatypes[t])){return true}}}return false}};function Connector(B,A){this.canvas=null;this.dragging=false;this.inner_color="#FFFFFF";this.outer_color="#D8B365"}$.extend(Connector.prototype ,{connect:function(B,A){this.handle1=B;this.handle1.connect(this);this.handle2=A;this.handle2.connect(this)},destroy:function(){if(this.handle1){this.handle1.disconnect(this)}if(this.handle2){this.handle2.disconnect(this)}$(this.canvas).remove()},redraw:function(){var C=$("#canvas-container");if(!this.canvas){this.canvas=document.createElement("canvas");C.append($(this.canvas));if(this.dragging){this.canvas.style.zIndex="300"}}var L=function(S){return $(S).offset().left-C.offset().left};var G=function(S){return $(S).offset().top-C.offset().top};var F=L(this.handle1.element)+5;var E=G(this.handle1.element)+5;var N=L(this.handle2.element)+5;var K=G(this.handle2.element)+5;var D=100;var I=Math.min(F,N);var A=Math.max(F,N);var H=Math.min(E,K);var R=Math.max(E,K);var B=Math.min(Math.max(Math.abs(R-H)/2,100),300);var M=I-D;var Q=H-D;var O=A-I+2*D;var J=R-H+2*D;this.canvas.style.left=M+"px";this.canvas.style.top=Q+"px";this.canvas.setAttribute("width",O);this.canvas.setAttribute("h eight",J);F-=M;E-=Q;N-=M;K-=Q;var P=this.canvas.getContext("2d");P.lineCap="round";P.strokeStyle=this.outer_color;P.lineWidth=7;P.beginPath();P.moveTo(F,E);P.bezierCurveTo(F+B,E,N-B,K,N,K);P.stroke();P.strokeStyle=this.inner_color;P.lineWidth=5;P.beginPath();P.moveTo(F,E);P.bezierCurveTo(F+B,E,N-B,K,N,K);P.stroke()}});function Node(A){this.element=A;this.input_terminals={};this.output_terminals={};this.tool_errors={}}$.extend(Node.prototype,{enable_input_terminal:function(C,A,B){node=this;$(C).each(function(){var D=this.terminal=new InputTerminal(this,B);D.node=node;D.name=A;$(this).droppable({tolerance:"intersect",accept:function(E){E=E.get(0);return(E.terminal)&&(D.can_accept(E.terminal))},activeClass:"input-terminal-active",over:function(F,E){E.helper.get(0).terminal.connectors[0].inner_color="#BBFFBB"},out:function(F,E){E.helper.get(0).terminal.connectors[0].inner_color="#FFFFFF"},drop:function(I,G){var E=$(this).data("droppable");var F=G.draggable.get(0).terminal;var H= E.element.get(0).terminal;var J=new Connector();J.connect(F,H);J.redraw()}});$(this).hoverIntent(function(){if(D.connectors.length>0){var E=$("<div class='callout'></div>").css({display:"none"}).appendTo("body").append($("<div class='buttons'></div>").append($("<img src='../images/delete_icon.png' />").click(function(){$.each(D.connectors,function(G,F){F.destroy()});E.remove()}))).bind("mouseleave",function(){$(this).fadeOut("fast",function(){$(this).remove()})});E.css({top:$(this).offset().top-2,left:$(this).offset().left-E.width(),"padding-right":$(this).width()}).fadeIn("fast")}},function(){});node.input_terminals[A]=D})},enable_output_terminal:function(C,A,B){node=this;$(C).each(function(){var D=this.terminal=new OutputTerminal(this,B);D.node=node;D.name=A;$(this).draggable({scrollPanel:true,panel:$("#canvas-container"),helper:function(){var E=$('<div class="drag-terminal" style="position: absolute;"></div>').appendTo("#canvas-container").get(0);E.terminal=new OutputTerm inal(E);var F=new Connector();this.drag_temp_connector=F;F.dragging=true;F.connect(this.terminal,E.terminal);return E},drag:function(F,E){h=E.helper.get(0);h.terminal.redraw()},stop:function(F,E){this.drag_temp_connector.destroy()}});node.output_terminals[A]=D})},redraw:function(){$.each(this.input_terminals,function(A,B){B.redraw()});$.each(this.output_terminals,function(A,B){B.redraw()})},destroy:function(){$.each(this.input_terminals,function(A,B){B.destroy();$(B.element).droppable("destroy")});$.each(this.output_terminals,function(A,B){B.destroy();$(B.element).draggable("destroy")});$(this.element).draggable("destroy").remove();workflow.remove_node(this)},make_active:function(){$(this.element).addClass("toolForm-active")},make_inactive:function(){$(this.element).removeClass("toolForm-active")},init_field_data:function(D){var C=this.element;if(D.type){this.type=D.type}this.form_html=D.form_html;this.tool_state=D.tool_state;this.tool_errors=D.tool_errors;if(this.tool_error s){C.addClass("tool-node-error")}else{C.removeClass("tool-node-error")}var B=this;var A=C.find(".toolFormBody");A.find("div").remove();var E=$("<div class='inputs'/>").appendTo(A);$.each(D.data_inputs,function(G,F){t=$("<div class='terminal input-terminal'></div>");B.enable_input_terminal(t,F.name,F.extensions);E.append($("<div class='form-row dataRow input-data-row' name='"+F.name+"'>"+F.label+"</div></div>").prepend(t))});if((D.data_inputs.length>0)&&(D.data_outputs.length>0)){A.append($("<div class='rule'></div>"))}$.each(D.data_outputs,function(I,F){var H=$("<div class='terminal output-terminal'></div>");B.enable_output_terminal(H,F.name,F.extension);var G=F.name;if(F.extension!="input"){G=G+" ("+F.extension+")"}A.append($("<div class='form-row dataRow'>"+G+"</div>").append(H))});workflow.node_changed(this)},update_field_data:function(D){var B=$(this.element),C=this;this.tool_state=D.tool_state;this.form_html=D.form_html;this.tool_errors=D.tool_errors;if(this.tool_errors ){B.addClass("tool-node-error")}else{B.removeClass("tool-node-error")}var E=B.find("div.inputs");var A=$("<div class='inputs'/>");old=E.find("div.input-data-row");$.each(D.data_inputs,function(H,F){var G=$("<div class='terminal input-terminal'></div>");C.enable_input_terminal(G,F.name,F.extensions);E.find("div[name="+F.name+"]").each(function(){$(this).find(".input-terminal").each(function(){var I=this.terminal.connectors[0];if(I){G[0].terminal.connectors[0]=I;I.handle2=G[0].terminal}});$(this).remove()});A.append($("<div class='form-row dataRow input-data-row' name='"+F.name+"'>"+F.label+"</div></div>").prepend(G))});E.replaceWith(A);E.find("div.input-data-row > .terminal").each(function(){this.terminal.destroy()});this.changed();this.redraw()},error:function(C){var A=$(this.element).find(".toolFormBody");A.find("div").remove();var B="<div style='color: red; text-style: italic;'>"+C+"</div>";this.form_html=B;A.html(B);workflow.node_changed(this)},changed:function(){workflow .node_changed(this)}});function Workflow(){this.id_counter=0;this.nodes={};this.name=null;this.has_changes=false}$.extend(Workflow.prototype,{add_node:function(A){A.id=this.id_counter;this.id_counter++;this.nodes[A.id]=A;this.has_changes=true;A.workflow=this},remove_node:function(A){if(this.active_node==A){this.clear_active_node()}delete this.nodes[A.id];this.has_changes=true},remove_all:function(){wf=this;$.each(this.nodes,function(B,A){A.destroy();wf.remove_node(A)})},to_simple:function(){var A={};$.each(this.nodes,function(B,D){var E={};$.each(D.input_terminals,function(F,G){E[G.name]=null;$.each(G.connectors,function(H,I){E[G.name]={id:I.handle1.node.id,output_name:I.handle1.name}})});var C={id:D.id,type:D.type,tool_id:D.tool_id,tool_state:D.tool_state,tool_errors:D.tool_errors,input_connections:E,position:$(D.element).position()};A[D.id]=C});return{steps:A}},from_simple:function(A){wf=this;var B=0;wf.name=A.name;$.each(A.steps,function(E,D){var C=prebuild_node("tool",D. name,D.tool_id);C.init_field_data(D);if(D.position){C.element.css({top:D.position.top,left:D.position.left})}C.id=D.id;wf.nodes[C.id]=C;B=Math.max(B,parseInt(E))});wf.id_counter=B+1;$.each(A.steps,function(E,D){var C=wf.nodes[E];$.each(D.input_connections,function(G,F){if(F){var H=wf.nodes[F.id];var I=new Connector();I.connect(H.output_terminals[F.output_name],C.input_terminals[G]);I.redraw()}})})},clear_active_node:function(){if(this.active_node){this.active_node.make_inactive()}parent.show_form_for_tool("<div>No node selected</div>")},activate_node:function(A){this.clear_active_node();parent.show_form_for_tool(A.form_html,A);A.make_active();this.active_node=A},node_changed:function(A){this.has_changes=true;if(this.active_node==A){this.activate_node(A)}}});function prebuild_node(H,F,K){var E=$("<div class='toolForm toolFormInCanvas'></div>");var C=new Node(E);C.type=H;if(H=="tool"){C.tool_id=K}var J=$("<div class='toolFormTitle unselectable'>"+F+"</div>");E.append(J);E.css( "left",$(window).scrollLeft()+20);E.css("top",$(window).scrollTop()+20);var I=$("<div class='toolFormBody'></div>");var D="<div><img height='16' align='middle' src='../images/loading_small_white_bg.gif'/> loading tool info...</div>";I.append(D);C.form_html=D;E.append(I);var G=$("<div class='buttons' style='float: right'></div>");G.append($("<img src='../images/delete_icon.png' />").click(function(){C.destroy()}).hover(function(){$(this).attr("src","../images/delete_icon_dark.png")},function(){$(this).attr("src","../images/delete_icon.png")}));E.appendTo("#canvas-container");var B=$("#canvas-container").position();E.css({left:(-B.left)+10,top:(-B.top)+10});var A=E.width();G.prependTo(J);A+=(G.width()+10);E.css("width",A);$(E).draggable({cursor:"move",scrollPanel:true,panel:$("#canvas-container"),scrollSensitivity:10,scrollSpeed:20,click:function(N,M){var L=$(this).data("draggable").element.get(0);(function(O){O.removeChild(L);O.appendChild(L)})(L.parentNode);workflow.activate _node(C)},start:function(M,L){workflow.activate_node(C);$(this).css("z-index","1000")},drag:function(M,L){$(this).find(".terminal").each(function(){this.terminal.redraw()})},stop:function(N,M){var L=$(this).data("draggable").element.get(0);(function(O){O.removeChild(L);O.appendChild(L)})(L.parentNode);$(this).css("z-index","100");$(this).find(".terminal").each(function(){this.terminal.redraw()});workflow.node_changed(this)}});return C}var ext_to_type=null;var type_to_type=null;function issubtype(B,A){B=ext_to_type[B];A=ext_to_type[A];return(A in type_to_type[B])}function populate_datatype_info(A){ext_to_type=A.ext_to_class_name;type_to_type=A.class_to_classes}; \ No newline at end of file +function Terminal(A){this.element=A;this.connectors=[]}Terminal.prototype={connect:function(A){this.connectors.push(A);if(this.node){this.node.changed()}},disconnect:function(A){this.connectors.splice($.inArray(A,this.connectors),1);if(this.node){this.node.changed()}},redraw:function(){$.each(this.connectors,function(A,B){B.redraw()})},destroy:function(){$.each(this.connectors.slice(),function(A,B){B.destroy()})}};function OutputTerminal(A,B){Terminal.call(this,A);this.datatype=B}OutputTerminal.prototype=new Terminal;function InputTerminal(A,B){Terminal.call(this,A);this.datatypes=B}InputTerminal.prototype=new Terminal;$.extend(InputTerminal.prototype,{can_accept:function(A){if(this.connectors.length<1){for(t in this.datatypes){if(A.datatype=="input"){return true}if(issubtype(A.datatype,this.datatypes[t])){return true}}}return false}});function Connector(B,A){this.canvas=null;this.dragging=false;this.inner_color="#FFFFFF";this.outer_color="#D8B365"}$.extend(Connector.prototy pe,{connect:function(B,A){this.handle1=B;this.handle1.connect(this);this.handle2=A;this.handle2.connect(this)},destroy:function(){if(this.handle1){this.handle1.disconnect(this)}if(this.handle2){this.handle2.disconnect(this)}$(this.canvas).remove()},redraw:function(){var C=$("#canvas-container");if(!this.canvas){this.canvas=document.createElement("canvas");if(window.G_vmlCanvasManager){G_vmlCanvasManager.initElement(this.canvas)}C.append($(this.canvas));if(this.dragging){this.canvas.style.zIndex="300"}}var L=function(S){return $(S).offset().left-C.offset().left};var G=function(S){return $(S).offset().top-C.offset().top};var F=L(this.handle1.element)+5;var E=G(this.handle1.element)+5;var N=L(this.handle2.element)+5;var K=G(this.handle2.element)+5;var D=100;var I=Math.min(F,N);var A=Math.max(F,N);var H=Math.min(E,K);var R=Math.max(E,K);var B=Math.min(Math.max(Math.abs(R-H)/2,100),300);var M=I-D;var Q=H-D;var O=A-I+2*D;var J=R-H+2*D;this.canvas.style.left=M+"px";this.canvas.styl e.top=Q+"px";this.canvas.setAttribute("width",O);this.canvas.setAttribute("height",J);F-=M;E-=Q;N-=M;K-=Q;var P=this.canvas.getContext("2d");P.lineCap="round";P.strokeStyle=this.outer_color;P.lineWidth=7;P.beginPath();P.moveTo(F,E);P.bezierCurveTo(F+B,E,N-B,K,N,K);P.stroke();P.strokeStyle=this.inner_color;P.lineWidth=5;P.beginPath();P.moveTo(F,E);P.bezierCurveTo(F+B,E,N-B,K,N,K);P.stroke()}});function Node(A){this.element=A;this.input_terminals={};this.output_terminals={};this.tool_errors={}}$.extend(Node.prototype,{enable_input_terminal:function(C,A,B){node=this;$(C).each(function(){var D=this.terminal=new InputTerminal(this,B);D.node=node;D.name=A;$(this).droppable({tolerance:"intersect",accept:function(E){E=E.get(0);return(E.terminal)&&(D.can_accept(E.terminal))},activeClass:"input-terminal-active",over:function(F,E){E.helper.get(0).terminal.connectors[0].inner_color="#BBFFBB"},out:function(F,E){E.helper.get(0).terminal.connectors[0].inner_color="#FFFFFF"},drop:function(I ,G){var E=$(this).data("droppable");var F=G.draggable.get(0).terminal;var H=E.element.get(0).terminal;var J=new Connector();J.connect(F,H);J.redraw()}});$(this).hoverIntent(function(){if(D.connectors.length>0){var E=$("<div class='callout'></div>").css({display:"none"}).appendTo("body").append($("<div class='buttons'></div>").append($("<img src='../images/delete_icon.png' />").click(function(){$.each(D.connectors,function(G,F){F.destroy()});E.remove()}))).bind("mouseleave",function(){$(this).remove()});E.css({top:$(this).offset().top-2,left:$(this).offset().left-E.width(),"padding-right":$(this).width()}).show()}},function(){});node.input_terminals[A]=D})},enable_output_terminal:function(C,A,B){node=this;$(C).each(function(){var D=this.terminal=new OutputTerminal(this,B);D.node=node;D.name=A;$(this).draggable({scrollPanel:true,panel:$("#canvas-container"),helper:function(){var E=$('<div class="drag-terminal" style="position: absolute;"></div>').appendTo("#canvas-container"). get(0);E.terminal=new OutputTerminal(E);var F=new Connector();this.drag_temp_connector=F;F.dragging=true;F.connect(this.terminal,E.terminal);return E},drag:function(F,E){h=E.helper.get(0);h.terminal.redraw()},stop:function(F,E){this.drag_temp_connector.destroy()}});node.output_terminals[A]=D})},redraw:function(){$.each(this.input_terminals,function(A,B){B.redraw()});$.each(this.output_terminals,function(A,B){B.redraw()})},destroy:function(){$.each(this.input_terminals,function(A,B){B.destroy();$(B.element).droppable("destroy")});$.each(this.output_terminals,function(A,B){B.destroy();$(B.element).draggable("destroy")});$(this.element).draggable("destroy").remove();workflow.remove_node(this)},make_active:function(){$(this.element).addClass("toolForm-active")},make_inactive:function(){$(this.element).removeClass("toolForm-active")},init_field_data:function(D){var C=this.element;if(D.type){this.type=D.type}this.form_html=D.form_html;this.tool_state=D.tool_state;this.tool_errors= D.tool_errors;if(this.tool_errors){C.addClass("tool-node-error")}else{C.removeClass("tool-node-error")}var B=this;var A=C.find(".toolFormBody");A.find("div").remove();var E=$("<div class='inputs'></div>").appendTo(A);$.each(D.data_inputs,function(H,F){var G=$("<div class='terminal input-terminal'></div>");B.enable_input_terminal(G,F.name,F.extensions);E.append($("<div class='form-row dataRow input-data-row' name='"+F.name+"'>"+F.label+"</div>").prepend(G))});if((D.data_inputs.length>0)&&(D.data_outputs.length>0)){A.append($("<div class='rule'></div>"))}$.each(D.data_outputs,function(I,F){var H=$("<div class='terminal output-terminal'></div>");B.enable_output_terminal(H,F.name,F.extension);var G=F.name;if(F.extension!="input"){G=G+" ("+F.extension+")"}A.append($("<div class='form-row dataRow'>"+G+"</div>").append(H))});workflow.node_changed(this)},update_field_data:function(E){var C=$(this.element),D=this;this.tool_state=E.tool_state;this.form_html=E.form_html;this.tool_error s=E.tool_errors;if(this.tool_errors){C.addClass("tool-node-error")}else{C.removeClass("tool-node-error")}var F=C.find("div.inputs");var B=$("<div class='inputs'></div>");var A=F.find("div.input-data-row");$.each(E.data_inputs,function(I,G){var H=$("<div class='terminal input-terminal'></div>");D.enable_input_terminal(H,G.name,G.extensions);F.find("div[name="+G.name+"]").each(function(){$(this).find(".input-terminal").each(function(){var J=this.terminal.connectors[0];if(J){H[0].terminal.connectors[0]=J;J.handle2=H[0].terminal}});$(this).remove()});B.append($("<div class='form-row dataRow input-data-row' name='"+G.name+"'>"+G.label+"</div>").prepend(H))});F.replaceWith(B);F.find("div.input-data-row > .terminal").each(function(){this.terminal.destroy()});this.changed();this.redraw()},error:function(C){var A=$(this.element).find(".toolFormBody");A.find("div").remove();var B="<div style='color: red; text-style: italic;'>"+C+"</div>";this.form_html=B;A.html(B);workflow.node_change d(this)},changed:function(){workflow.node_changed(this)}});function Workflow(){this.id_counter=0;this.nodes={};this.name=null;this.has_changes=false}$.extend(Workflow.prototype,{add_node:function(A){A.id=this.id_counter;this.id_counter++;this.nodes[A.id]=A;this.has_changes=true;A.workflow=this},remove_node:function(A){if(this.active_node==A){this.clear_active_node()}delete this.nodes[A.id];this.has_changes=true},remove_all:function(){wf=this;$.each(this.nodes,function(B,A){A.destroy();wf.remove_node(A)})},to_simple:function(){var A={};$.each(this.nodes,function(B,D){var E={};$.each(D.input_terminals,function(F,G){E[G.name]=null;$.each(G.connectors,function(H,I){E[G.name]={id:I.handle1.node.id,output_name:I.handle1.name}})});var C={id:D.id,type:D.type,tool_id:D.tool_id,tool_state:D.tool_state,tool_errors:D.tool_errors,input_connections:E,position:$(D.element).position()};A[D.id]=C});return{steps:A}},from_simple:function(A){wf=this;var B=0;wf.name=A.name;$.each(A.steps,functio n(E,D){var C=prebuild_node("tool",D.name,D.tool_id);C.init_field_data(D);if(D.position){C.element.css({top:D.position.top,left:D.position.left})}C.id=D.id;wf.nodes[C.id]=C;B=Math.max(B,parseInt(E))});wf.id_counter=B+1;$.each(A.steps,function(E,D){var C=wf.nodes[E];$.each(D.input_connections,function(G,F){if(F){var H=wf.nodes[F.id];var I=new Connector();I.connect(H.output_terminals[F.output_name],C.input_terminals[G]);I.redraw()}})})},clear_active_node:function(){if(this.active_node){this.active_node.make_inactive()}parent.show_form_for_tool("<div>No node selected</div>")},activate_node:function(A){this.clear_active_node();parent.show_form_for_tool(A.form_html,A);A.make_active();this.active_node=A},node_changed:function(A){this.has_changes=true;if(this.active_node==A){this.activate_node(A)}}});function prebuild_node(H,F,K){var E=$("<div class='toolForm toolFormInCanvas'></div>");var C=new Node(E);C.type=H;if(H=="tool"){C.tool_id=K}var J=$("<div class='toolFormTitle unselectab le'>"+F+"</div>");E.append(J);E.css("left",$(window).scrollLeft()+20);E.css("top",$(window).scrollTop()+20);var I=$("<div class='toolFormBody'></div>");var D="<div><img height='16' align='middle' src='../images/loading_small_white_bg.gif'/> loading tool info...</div>";I.append(D);C.form_html=D;E.append(I);var G=$("<div class='buttons' style='float: right;'></div>");G.append($("<img src='../images/delete_icon.png' />").click(function(L){C.destroy()}).hover(function(){$(this).attr("src","../images/delete_icon_dark.png")},function(){$(this).attr("src","../images/delete_icon.png")}));zmax=$("#canvas-container").data("zmax");if(!zmax){zmax=0}E.css("zIndex",zmax+1);$("#canvas-container").data("zmax",zmax+1);E.appendTo("#canvas-container");var B=$("#canvas-container").position();E.css({left:(-B.left)+10,top:(-B.top)+10});var A=E.width();G.prependTo(J);A+=(G.width()+10);E.css("width",A);$(E).draggable({cursor:"move",scrollPanel:true,panel:$("#canvas-container"),scrollSensitivity:10, scrollSpeed:20,click:function(M,L){zmax=$("#canvas-container").data("zmax");$(this).css("zIndex",zmax+1);$("#canvas-container").data("zmax",zmax+1);workflow.activate_node(C)},start:function(M,L){workflow.activate_node(C);$(this).css("z-index",$("#canvas-container").data("zmax")+1000)},drag:function(M,L){$(this).find(".terminal").each(function(){this.terminal.redraw()})},stop:function(M,L){zmax=$("#canvas-container").data("zmax");$(this).css("zIndex",zmax+1);$("#canvas-container").data("zmax",zmax+1);$(this).find(".terminal").each(function(){this.terminal.redraw()});workflow.node_changed(this)}});return C}var ext_to_type=null;var type_to_type=null;function issubtype(B,A){B=ext_to_type[B];A=ext_to_type[A];return(A in type_to_type[B])}function populate_datatype_info(A){ext_to_type=A.ext_to_class_name;type_to_type=A.class_to_classes}; \ No newline at end of file diff -r 6eac08f7edcf -r b671c301674a templates/workflow/editor.mako --- a/templates/workflow/editor.mako Fri Aug 22 17:44:32 2008 -0400 +++ b/templates/workflow/editor.mako Fri Aug 22 17:47:43 2008 -0400 @@ -14,8 +14,11 @@ <%def name="javascripts()"> - ## ${parent.javascripts()} - + ${parent.javascripts()} + +  <script type='text/javascript' src="/static/scripts/jquery.js"> </script> <script type='text/javascript' src="/static/scripts/jquery.ui.js"> </script> <script type='text/javascript' src="/static/scripts/galaxy.ui.scrollPanel.js"> </script> @@ -23,46 +26,6 @@ <script type='text/javascript' src="/static/scripts/jquery.form.js"> </script> <script type='text/javascript' src="/static/scripts/jquery.json.js"> </script> - <script type='text/javascript'> - /* Dialog and menu handling tools to be moved to galaxy.layout.js */ - - function hide_modal() { - $(".dialog-box-container" ).fadeOut( function() { $("#overlay").hide(); } ); - }; - - function show_modal( title, body, buttons, extra_buttons ) { - $( ".dialog-box" ).find( ".title" ).html( title ); - var b = $( ".dialog-box" ).find( ".buttons" ).html( "" ); - if ( buttons ) { - $.each( buttons, function( name, value ) { - b.append( $( '<button/>' ).text( name ).click( value ) ); - b.append( " " ); - }); - b.show(); - } else { - b.hide(); - } - var b = $( ".dialog-box" ).find( ".extra_buttons" ).html( "" ); - if ( extra_buttons ) { - $.each( extra_buttons, function( name, value ) { - b.append( $( '<button/>' ).text( name ).click( value ) ); - b.append( " " ); - }); - b.show(); - } else { - b.hide(); - } - if ( body == "progress" ) { - body = $( "<img src='${h.url_for('/static/images/yui/rel_interstitial_loading.gif')}'/>" ); - } - $( ".dialog-box" ).find( ".body" ).html( body ); - if ( ! $(".dialog-box-container").is( ":visible" ) ) { - $("#overlay").show(); - $(".dialog-box-container").fadeIn() - } - }; - </script> - <script type='text/javascript' src="/static/scripts/galaxy.workflow_editor.canvas.js"> </script> <script type='text/javascript'> @@ -70,38 +33,34 @@ $( function() { // Initialize workflow state reset(); - // Shim (the background of the editor area) causes loss of focus - // $("#shim").click( workflow.clear_active_node ).hoverIntent( { - // over: function () { $("div.toolForm").fadeTo( "fast", 0.7 ) }, - // out: function () { $("div.toolForm").fadeTo( "fast", 1.0 ) }, - // interval: 300 - // }); // Load the datatype info - $.getJSON( "${h.url_for( action='get_datatypes' )}", function( data ) { - populate_datatype_info( data ); - // Load workflow definition - $.ajax( { - url: "${h.url_for( action='load_workflow' )}", - data: { id: "${trans.security.encode_id( workflow_id )}", "_": "true" }, - dataType: 'json', - success: function( data ) { - reset(); - workflow.from_simple( data ); - workflow.has_changes = false; - scroll_to_nodes(); - hide_modal(); - }, - beforeSubmit: function( data ) { - show_modal( "Loading workflow", "progress" ); - } - }); + $.ajax( { + url: "${h.url_for( action='get_datatypes' )}", + dataType: "json", + cache: false, + success: function( data ) { + populate_datatype_info( data ); + // Load workflow definition + $.ajax( { + url: "${h.url_for( action='load_workflow' )}", + data: { id: "${trans.security.encode_id( workflow_id )}", "_": "true" }, + dataType: 'json', + cache: false, + success: function( data ) { + reset(); + workflow.from_simple( data ); + workflow.has_changes = false; + scroll_to_nodes(); + hide_modal(); + }, + beforeSubmit: function( data ) { + show_modal( "Loading workflow", "progress" ); + } + }); + } }); $(document).ajaxError( function ( e, x ) { - // $("#error-display").empty() - // .append( $("<div/>").html( x.responseText ) ) - // .append( $("<div><a>close</a></div>" ).click( function() { $("#error-display").hide(); } ) ) - // .show(); show_modal( "Server error", x.responseText, { "Ignore error" : hide_modal } ); return false; }); @@ -272,7 +231,7 @@ save_current_workflow( do_close ); } }, { - "Don't Save": do_close, + "Don't Save": do_close } ); } else { window.document.location = "${next_url}" @@ -410,20 +369,10 @@ margin: 5px; } - #error-display { - display: none; - position: fixed; - top: 5%; left: 5%; width: 90%; height: 90%; - border: solid red 10px; - background: #FFDDDD; - z-index: 50000; - overflow: auto; - } - canvas { position: absolute; z-index: 10; } canvas.dragging { position: absolute; z-index: 1000; } - .input-terminal { width: 12px; height: 12px; background: url(${h.url_for('/static/style/workflow_circle_open.png')}); position: absolute; bottom: 0; left: -16px; z-index: 1500; } - .output-terminal { width: 12px; height: 12px; background: url(${h.url_for('/static/style/workflow_circle_open.png')}); position: absolute; bottom: 0; right: -16px; z-index: 1500; } + .input-terminal { width: 12px; height: 12px; background: url(${h.url_for('/static/style/workflow_circle_open.png')}); position: absolute; top: 0; left: -16px; z-index: 1500; } + .output-terminal { width: 12px; height: 12px; background: url(${h.url_for('/static/style/workflow_circle_open.png')}); position: absolute; top: 0; right: -16px; z-index: 1500; } .drag-terminal { width: 12px; height: 12px; background: url(${h.url_for('/static/style/workflow_circle_drag.png')}); position: absolute; z-index: 1500; } .input-terminal-active { background: url(${h.url_for('/static/style/workflow_circle_green.png')}); } ## .input-terminal-hover { background: yellow; border: solid black 1px; } @@ -504,13 +453,11 @@ </style> </%def> - -<div id="error-display"></div> <div id="overlay"> ## Need a table here for centering in IE6 <table class="dialog-box-container" border="0" cellpadding="0" cellspacing="0"><tr><td> - <div style="position: relative;"> + <div class="dialog-box-wrapper"> <div class="dialog-box"> <div class="unified-panel-header"> <div class="unified-panel-header-inner"><span class='title'>Loading workflow editor...</span></div> @@ -522,7 +469,6 @@ <div style="clear: both;"></div> </div> </div> - <div class="dialog-box-underlay"></div> </div> </td></tr></table> </div> @@ -558,9 +504,9 @@ %if "[[" in tool.description and "]]" in tool.description: ${tool.description.replace( '[[', '<a id="link-${tool.id}" href="javascript:add_node_for_tool( ${tool.id} )">' % tool.id ).replace( "]]", "</a>" )} %elif tool.name: - <a id="link-${tool.id}" href="javascript:add_node_for_tool( '${tool.id}', '${tool.name}' )">${tool.name}</a> ${tool.description} + <a id="link-${tool.id}" href="#" onclick="add_node_for_tool( '${tool.id}', '${tool.name}' )">${tool.name}</a> ${tool.description} %else: - <a id="link-${tool.id}" href="javascript:add_node_for_tool( '${tool.id}', '${tool.name}' )">${tool.description}</a> + <a id="link-${tool.id}" href="#" onclick="add_node_for_tool( '${tool.id}', '${tool.name}' )">${tool.description}</a> %endif </div> %else: @@ -588,7 +534,7 @@ <div id="__workflow__input__" class="toolSectionBody"> <div class="toolSectionBg"> <div class="toolTitle"> - <a href="javascript:add_node_for_module( 'data_input', 'Input Dataset' )">Input dataset</a> + <a href="#" onclick="add_node_for_module( 'data_input', 'Input Dataset' )">Input dataset</a> </div> </div> </div> diff -r 6eac08f7edcf -r b671c301674a templates/workflow/index.mako --- a/templates/workflow/index.mako Fri Aug 22 17:44:32 2008 -0400 +++ b/templates/workflow/index.mako Fri Aug 22 17:47:43 2008 -0400 @@ -21,16 +21,15 @@ </div> %endif -<div> - <div style="float: right;"> - <a class="action-button" href="${h.url_for( action='create' )}"> - <img src="${h.url_for('/static/images/silk/add.png')}" /> - <span>Add a new workflow</span> - </a> - </div> - <h2>Your workflows</h2> +<h2>Your workflows</h2> + +<div style="float: right; margin-top: -2.5em;"> + <a class="action-button" href="${h.url_for( action='create' )}"> + <img src="${h.url_for('/static/images/silk/add.png')}" /> + <span>Add a new workflow</span> + </a> </div> - + %if workflows: <table class="colored" border="0" cellspacing="0" cellpadding="0" width="100%"> <tr class="header">

1 0

[hg] galaxy 1478: Add excanvas javascript (emulates <canvas> in ...
by greg＠scofield.bx.psu.edu 27 Aug '08

27 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/6eac08f7edcf changeset: 1478:6eac08f7edcf user: James Taylor <james(a)jamestaylor.org> date: Fri Aug 22 17:44:32 2008 -0400 description: Add excanvas javascript (emulates <canvas> in IE using silverlight) 2 file(s) affected in this change: static/scripts/excanvas.js static/scripts/packed/excanvas.js diffs (780 lines): diff -r 99e223f6a132 -r 6eac08f7edcf static/scripts/excanvas.js --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/scripts/excanvas.js Fri Aug 22 17:44:32 2008 -0400 @@ -0,0 +1,770 @@ +// Copyright 2006 Google Inc. +// +// Licensed under the Apache License, Version 2.0 (the "License"); +// you may not use this file except in compliance with the License. +// You may obtain a copy of the License at +// +// http://www.apache.org/licenses/LICENSE-2.0 +// +// Unless required by applicable law or agreed to in writing, software +// distributed under the License is distributed on an "AS IS" BASIS, +// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +// See the License for the specific language governing permissions and +// limitations under the License. + + +// Known Issues: (From VML version) +// +// * Patterns are not implemented. +// * Radial gradient are not implemented. The VML version of these look very +// different from the canvas one. +// * Clipping paths are not implemented. +// * Coordsize. The width and height attribute have higher priority than the +// width and height style values which isn't correct. +// * Painting mode isn't implemented. +// * Canvas width/height should is using content-box by default. IE in +// Quirks mode will draw the canvas using border-box. Either change your +// doctype to HTML5 +// (http://www.whatwg.org/specs/web-apps/current-work/#the-doctype) +// or use Box Sizing Behavior from WebFX +// (http://webfx.eae.net/dhtml/boxsizing/boxsizing.html) +// * Optimize. There is always room for speed improvements. + +//Known Issues: Silverlight version +// +// * Doing a transformation during a path (ie lineTo, transform, lineTo) will +// not work corerctly because the transform is done to the whole path (ie +// transform, lineTo, lineTo) +// * Patterns are not yet implemented. + + +// only add this code if we do not already have a canvas implementation +if (!window.CanvasRenderingContext2D) { + +(function () { + + var xamlId; + + var G_vmlCanvasManager_ = { + init: function (opt_doc) { + var doc = opt_doc || document; + // Create a dummy element so that IE will allow canvas elements to be + // recognized. + doc.createElement('canvas'); + if (/MSIE/.test(navigator.userAgent) && !window.opera) { + var self = this; + + createXamlScriptTag(); + + doc.attachEvent('onreadystatechange', function () { + self.init_(doc); + }); + } + }, + + init_: function (doc) { + // setup default css + var ss = doc.createStyleSheet(); + ss.cssText = 'canvas{display:inline-block;overflow:hidden;' + + // default size is 300x150 in Gecko and Opera + 'text-align:left;width:300px;height:150px}' + + 'canvas object{width:100%;height:100%;border:0;' + + 'background:transparen;margin:0}'; + + // find all canvas elements + var els = doc.getElementsByTagName('canvas'); + for (var i = 0; i < els.length; i++) { + if (!els[i].getContext) { + this.initElement(els[i]); + } + } + }, + + + /** + * Public initializes a canvas element so that it can be used as canvas + * element from now on. This is called automatically before the page is + * loaded but if you are creating elements using createElement you need to + * make sure this is called on the element. + * @param {HTMLElement} el The canvas element to initialize. + * @return {HTMLElement} the element that was created. + */ + initElement: function (el) { + el.getContext = function () { + if (this.context_) { + return this.context_; + } + return this.context_ = new CanvasRenderingContext2D_(this); + }; + + var attrs = el.attributes; + if (attrs.width && attrs.width.specified) { + // TODO: use runtimeStyle and coordsize + // el.getContext().setWidth_(attrs.width.nodeValue); + el.style.width = attrs.width.nodeValue + 'px'; + } else { + el.width = el.clientWidth; + } + if (attrs.height && attrs.height.specified) { + // TODO: use runtimeStyle and coordsize + // el.getContext().setHeight_(attrs.height.nodeValue); + el.style.height = attrs.height.nodeValue + 'px'; + } else { + el.height = el.clientHeight; + } + + // insert object tag + el.innerHTML = getObjectHtml(); + + // do not use inline function because that will leak memory + el.attachEvent('onpropertychange', onPropertyChange); + return el; + } + }; + + function onPropertyChange(e) { + var el = e.srcElement; + + switch (e.propertyName) { + case 'width': + el.style.width = el.attributes.width.nodeValue + 'px'; + el.getContext().clearRect(); + break; + case 'height': + el.style.height = el.attributes.height.nodeValue + 'px'; + el.getContext().clearRect(); + break; + } + } + + G_vmlCanvasManager_.init(); + + function createXamlScriptTag() { + // This script tag contains the boilerplate XAML. + document.write('<script type=text/xaml>' + + '<Canvas x:Name="root" ' + + 'xmlns="http://schemas.microsoft.com/client/2007" ' + + 'xmlns:x="http://schemas.microsoft.com/winfx/2006/xaml" ' + + 'Width="300" ' + + 'Height="150" ' + + 'Background="Transparent"> ' + + '</Canvas>' + + '</script>'); + // Find the id of the writtenscript file. + var scripts = document.scripts; + var script = scripts[scripts.length - 1]; + xamlId = script.uniqueID; + script.id = xamlId; + } + + function getObjectHtml(fn) { + return '<object type="application/x-silverlight" >' + + '<param name="windowless" value="true">' + + '<param name="background" value="transparent">' + + '<param name="source" value="#' + xamlId + '">' + + '</object>'; + } + + function hasSilverlight() { + try { + new ActiveXObject('AgControl.AgControl'); + return true; + } catch(_) { + return false; + } + } + + // precompute "00" to "FF" + var dec2hex = []; + for (var i = 0; i < 16; i++) { + for (var j = 0; j < 16; j++) { + dec2hex[i * 16 + j] = i.toString(16) + j.toString(16); + } + } + + function createMatrixIdentity() { + return [ + [1, 0, 0], + [0, 1, 0], + [0, 0, 1] + ]; + } + + function matrixMultiply(m1, m2) { + var result = createMatrixIdentity(); + + for (var x = 0; x < 3; x++) { + for (var y = 0; y < 3; y++) { + var sum = 0; + + for (var z = 0; z < 3; z++) { + sum += m1[x][z] * m2[z][y]; + } + + result[x][y] = sum; + } + } + return result; + } + + function doTransform(ctx) { + transformObject(ctx, getRoot(ctx), ctx.m_); + } + + function transformObject(ctx, obj, m) { + var transform = obj.renderTransform; + var matrix; + if (!transform) { + transform = create(ctx, '<MatrixTransform/>'); + matrix = create(ctx, '<Matrix/>'); + transform.matrix = matrix; + obj.renderTransform = transform; + } else { + matrix = transform.matrix; + } + + matrix.m11 = m[0][0]; + matrix.m12 = m[0][1]; + matrix.m21 = m[1][0]; + matrix.m22 = m[1][1]; + matrix.offsetX = m[2][0]; + matrix.offsetY = m[2][1]; + } + + function copyState(o1, o2) { + o2.fillStyle = o1.fillStyle; + o2.lineCap = o1.lineCap; + o2.lineJoin = o1.lineJoin; + o2.lineWidth = o1.lineWidth; + o2.miterLimit = o1.miterLimit; + o2.shadowBlur = o1.shadowBlur; + o2.shadowColor = o1.shadowColor; + o2.shadowOffsetX = o1.shadowOffsetX; + o2.shadowOffsetY = o1.shadowOffsetY; + o2.strokeStyle = o1.strokeStyle; + o2.globalAlpha = o1.globalAlpha; + o2.arcScaleX_ = o1.arcScaleX_; + o2.arcScaleY_ = o1.arcScaleY_; + } + + function translateColor(s) { + var rgbaMatch = /rgba$([^)]+)$/gi.exec(s); + if (rgbaMatch) { + var parts = rgbaMatch[1].split(','); + return '#' + dec2hex[Math.floor(Number(parts[3]) * 255)] + + dec2hex[Number(parts[0])] + + dec2hex[Number(parts[1])] + + dec2hex[Number(parts[2])]; + } + + var rgbMatch = /rgb$([^)]+)$/gi.exec(s); + if (rgbMatch) { + var parts = rgbMatch[1].split(','); + return '#FF' + dec2hex[Number(parts[0])] + + dec2hex[Number(parts[1])] + + dec2hex[Number(parts[2])]; + } + + return s; + } + + function processLineCap(lineCap) { + switch (lineCap) { + case 'butt': + return 'flat'; + case 'round': + return 'round'; + case 'square': + default: + return 'square'; + } + } + + function getRoot(ctx) { + return ctx.canvas.firstChild.content.findName('root'); + } + + function create(ctx, s, opt_args) { + if (opt_args) { + s = s.replace(/\%(\d+)/g, function(match, index) { + return opt_args[Number(index) - 1]; + }); + } + + try { + return ctx.canvas.firstChild.content.createFromXaml(s); + } catch (ex) { + throw Error('Could not create XAML from: ' + s); + } + } + + function drawShape(ctx, s, opt_args) { + var canvas = ctx.lastCanvas_ || create(ctx, '<Canvas/>'); + var shape = create(ctx, s, opt_args); + canvas.children.add(shape); + transformObject(ctx, canvas, ctx.m_); + if (!ctx.lastCanvas_) { + getRoot(ctx).children.add(canvas); + ctx.lastCanvas_ = canvas; + } + return shape; + } + + function createBrushObject(ctx, value) { + if (value instanceof CanvasGradient_) { + return value.createBrush_(ctx); + } else if (value instanceof CanvasPattern_) { + throw Error('Not implemented'); + } else { + return create(ctx, '<SolidColorBrush Color="%1"/>', + [translateColor(value)]); + } + } + + /** + * This class implements CanvasRenderingContext2D interface as described by + * the WHATWG. + * @param {HTMLElement} surfaceElement The element that the 2D context should + * be associated with + */ + function CanvasRenderingContext2D_(surfaceElement) { + this.m_ = createMatrixIdentity(); + this.lastCanvas_ = null; + + this.mStack_ = []; + this.aStack_ = []; + this.currentPath_ = []; + + // Canvas context properties + this.strokeStyle = '#000'; + this.fillStyle = '#000'; + + this.lineWidth = 1; + this.lineJoin = 'miter'; + this.lineCap = 'butt'; + this.miterLimit = 10; + this.globalAlpha = 1; + this.canvas = surfaceElement; + }; + + + var contextPrototype = CanvasRenderingContext2D_.prototype; + + contextPrototype.clearRect = function() { + var root = getRoot(this); + root.children.clear(); + + // TODO: Implement + this.currentPath_ = []; + this.lastCanvas_ = null; + + }; + + contextPrototype.beginPath = function() { + // TODO: Branch current matrix so that save/restore has no effect + // as per safari docs. + + this.currentPath_ = []; + }; + + contextPrototype.moveTo = function(aX, aY) { + this.currentPath_.push('M' + aX + ',' + aY); + }; + + contextPrototype.lineTo = function(aX, aY) { + if (this.currentPath_.length == 0) return; + this.currentPath_.push('L' + aX + ',' + aY); + }; + + contextPrototype.bezierCurveTo = function(aCP1x, aCP1y, + aCP2x, aCP2y, + aX, aY) { + if (this.currentPath_.length == 0) return; + this.currentPath_.push('C' + aCP1x + ',' + aCP1y + ' ' + + aCP2x + ',' + aCP2y + ' ' + + aX + ' ' + aY); + }; + + contextPrototype.quadraticCurveTo = function(aCPx, aCPy, aX, aY) { + if (this.currentPath_.length == 0) return; + this.currentPath_.push('Q' + aCPx + ',' + aCPy + ' ' + + aX + ',' + aY); + }; + + contextPrototype.arcTo = function(x1, y1, x2, y2, radius) { + if (this.currentPath_.length == 0) return; + // TODO: Implement + }; + + contextPrototype.arc = function(aX, aY, aRadius, + aStartAngle, aEndAngle, aClockwise) { + var deltaAngle = Math.abs(aStartAngle - aEndAngle); + // If start and stop are the same WebKit and Moz does nothing + if (aStartAngle == aEndAngle) { + // different browsers behave differently here so we do the easiest thing + return; + } + + var endX = aX + aRadius * Math.cos(aEndAngle); + var endY = aY + aRadius * Math.sin(aEndAngle); + + if (deltaAngle >= 2 * Math.PI) { + // if larger than 2PI + this.arc(aX, aY, aRadius, aStartAngle, aStartAngle + Math.PI, aClockwise); + this.arc(aX, aY, aRadius, aStartAngle + Math.PI, + aStartAngle + 2 * Math.PI, aClockwise); + // now move to end point + this.moveTo(endX, endY); + return; + } + + var startX = aX + aRadius * Math.cos(aStartAngle); + var startY = aY + aRadius * Math.sin(aStartAngle); + var rotationAngle = deltaAngle * 180 / Math.PI; // sign, abs? + var sweepDirection = aClockwise ? 0 : 1; + var isLargeArc = rotationAngle >= 180 == Boolean(aClockwise) ? 0 : 1; + + if (this.currentPath_.length != 0) { + // add line to start point + this.lineTo(startX, startY); + } else { + this.moveTo(startX, startY); + } + + this.currentPath_.push('A' + aRadius + ',' + aRadius + ' ' + + rotationAngle + ' ' + + isLargeArc + ' ' + + sweepDirection + ' ' + + endX + ',' + endY); + }; + + contextPrototype.rect = function(aX, aY, aWidth, aHeight) { + this.moveTo(aX, aY); + this.lineTo(aX + aWidth, aY); + this.lineTo(aX + aWidth, aY + aHeight); + this.lineTo(aX, aY + aHeight); + this.closePath(); + }; + + contextPrototype.strokeRect = function(aX, aY, aWidth, aHeight) { + // Will destroy any existing path (same as FF behaviour) + this.beginPath(); + this.moveTo(aX, aY); + this.lineTo(aX + aWidth, aY); + this.lineTo(aX + aWidth, aY + aHeight); + this.lineTo(aX, aY + aHeight); + this.closePath(); + this.stroke(); + this.currentPath_ = []; + }; + + contextPrototype.fillRect = function(aX, aY, aWidth, aHeight) { + // Will destroy any existing path (same as FF behaviour) + this.beginPath(); + this.moveTo(aX, aY); + this.lineTo(aX + aWidth, aY); + this.lineTo(aX + aWidth, aY + aHeight); + this.lineTo(aX, aY + aHeight); + this.closePath(); + this.fill(); + this.currentPath_ = []; + }; + + contextPrototype.createLinearGradient = function(aX0, aY0, aX1, aY1) { + return new LinearCanvasGradient_(aX0, aY0, aX1, aY1); + }; + + contextPrototype.createRadialGradient = function(x0, y0, + r0, x1, + y1, r1) { + return new RadialCanvasGradient_(x0, y0, r0, x1, y1, r1); + }; + + contextPrototype.drawImage = function (image, var_args) { + var dx, dy, dw, dh, sx, sy, sw, sh; + + // For Silverlight we don't need to get the size of the image since + // Silverlight uses the image original dimension if not provided. + + if (arguments.length == 3) { + dx = arguments[1]; + dy = arguments[2]; + // Keep sx, sy, sw, dw, sh and dh undefined + } else if (arguments.length == 5) { + dx = arguments[1]; + dy = arguments[2]; + dw = arguments[3]; + dh = arguments[4]; + // Keep sx, sy, sw and sh undefined + } else if (arguments.length == 9) { + sx = arguments[1]; + sy = arguments[2]; + sw = arguments[3]; + sh = arguments[4]; + dx = arguments[5]; + dy = arguments[6]; + dw = arguments[7]; + dh = arguments[8]; + } else { + throw Error('Invalid number of arguments'); + } + + var slImage; + + // If we have a source rect we need to clip the image. + if (arguments.length == 9) { + slImage = drawShape(this, '<Image Source="%1"/>', [image.src]); + + var clipRect = create(this, + '<RectangleGeometry Rect="%1,%2,%3,%4"/>', [sx, sy, sw, sh]); + slImage.clip = clipRect; + + var m = createMatrixIdentity(); + + // translate to 0,0 + m[2][0] = -sx; + m[2][1] = -sy; + + // scale + var m2 = createMatrixIdentity(); + m2[0][0] = dw / sw; + m2[1][1] = dh / sh; + + m = matrixMultiply(m, m2); + + // translate to destination + m[2][0] += dx; + m[2][1] += dy; + + transformObject(this, slImage, m); + + } else { + slImage = drawShape(this, + '<Image Source="%1" Canvas.Left="%2" Canvas.Top="%3"/>', + [image.src, dx, dy]); + if (dw != undefined || dh != undefined) { + slImage.width = dw; + slImage.height = dh; + slImage.stretch = 'fill'; + } + } + }; + + contextPrototype.stroke = function() { + if (this.currentPath_.length == 0) return; + var path = drawShape(this, '<Path Data="%1"/>', + [this.currentPath_.join(' ')]); + path.stroke = createBrushObject(this, this.strokeStyle); + path.opacity = this.globalAlpha; + path.strokeThickness = this.lineWidth; + path.strokeMiterLimit = this.miterLimit; + path.strokeLineJoin = this.lineJoin; + // Canvas does not differentiate start from end + path.strokeEndLineCap = path.strokeStartLineCap = + processLineCap(this.lineCap); + }; + + contextPrototype.fill = function() { + if (this.currentPath_.length == 0) return; + var path = drawShape(this, '<Path Data="%1"/>', + [this.currentPath_.join(' ')]); + // The spec says to use non zero but Silverlight uses EvenOdd by defaul + path.data.fillRule = 'NonZero'; + path.fill = createBrushObject(this, this.fillStyle); + // TODO: What about even-odd etc? + }; + + contextPrototype.closePath = function() { + this.currentPath_.push('z'); + }; + + /** + * Sets the transformation matrix and marks things as dirty + */ + function setM(self, m) { + self.m_ = m; + self.lastCanvas_ = null; + }; + + contextPrototype.save = function() { + var o = {}; + copyState(this, o); + this.aStack_.push(o); + this.mStack_.push(this.m_); + setM(this, matrixMultiply(createMatrixIdentity(), this.m_)); + }; + + contextPrototype.restore = function() { + copyState(this.aStack_.pop(), this); + setM(this, this.mStack_.pop()); + }; + + contextPrototype.translate = function(aX, aY) { + var m1 = [ + [1, 0, 0], + [0, 1, 0], + [aX, aY, 1] + ]; + + setM(this, matrixMultiply(m1, this.m_)); + }; + + contextPrototype.rotate = function(aRot) { + var c = Math.cos(aRot); + var s = Math.sin(aRot); + + var m1 = [ + [c, s, 0], + [-s, c, 0], + [0, 0, 1] + ]; + + setM(this, matrixMultiply(m1, this.m_)); + }; + + contextPrototype.scale = function(aX, aY) { + var m1 = [ + [aX, 0, 0], + [0, aY, 0], + [0, 0, 1] + ]; + + setM(this, matrixMultiply(m1, this.m_)); + }; + + contextPrototype.transform = function(m11, m12, m21, m22, dx, dy) { + var m1 = [ + [m11, m12, 0], + [m21, m22, 0], + [ dx, dy, 1] + ]; + + setM(this, matrixMultiply(m1, this.m_)); + }; + + contextPrototype.setTransform = function(m11, m12, m21, m22, dx, dy) { + setM(this, [ + [m11, m12, 0], + [m21, m22, 0], + [ dx, dy, 1], + ]); + }; + + /******** STUBS ********/ + contextPrototype.clip = function() { + // TODO: Implement + }; + + contextPrototype.createPattern = function() { + return new CanvasPattern_; + }; + + // Gradient / Pattern Stubs + function CanvasGradient_() { + this.colors_ = []; + } + + CanvasGradient_.prototype.addColorStop = function(aOffset, aColor) { + aColor = translateColor(aColor); + this.colors_.push({offset: aOffset, color: aColor}); + }; + + CanvasGradient_.prototype.createStops_ = function(ctx, brushObj, colors) { + var gradientStopCollection = brushObj.gradientStops; + for (var i = 0, c; c = colors[i]; i++) { + var color = translateColor(c.color); + gradientStopCollection.add(create(ctx, + '<GradientStop Color="%1" Offset="%2"/>', [color, c.offset])); + } + }; + + function LinearCanvasGradient_(x0, y0, x1, y1) { + CanvasGradient_.call(this); + this.x0_ = x0; + this.y0_ = y0; + this.x1_ = x1; + this.y1_ = y1; + } + LinearCanvasGradient_.prototype = new CanvasGradient_; + + LinearCanvasGradient_.prototype.createBrush_ = function(ctx) { + var brushObj = create(ctx, '<LinearGradientBrush MappingMode="Absolute" ' + + 'StartPoint="%1,%2" EndPoint="%3,%4"/>', + [this.x0_, this.y0_, this.x1_, this.y1_]); + this.createStops_(ctx, brushObj, this.colors_); + return brushObj; + }; + + function isNanOrInfinite(v) { + return isNaN(v) || !isFinite(v); + } + + function RadialCanvasGradient_(x0, y0, r0, x1, y1, r1) { + if (r0 < 0 || r1 < 0 || isNanOrInfinite(x0) || isNanOrInfinite(y0) || + isNanOrInfinite(x1) || isNanOrInfinite(y1)) { + // IE does not support DOMException so this is as close as we get. + var error = Error('DOMException.INDEX_SIZE_ERR'); + error.code = 1; + throw error; + } + + CanvasGradient_.call(this); + this.x0_ = x0; + this.y0_ = y0; + this.r0_ = r0; + this.x1_ = x1; + this.y1_ = y1; + this.r1_ = r1; + } + RadialCanvasGradient_.prototype = new CanvasGradient_; + + CanvasGradient_.prototype.createBrush_ = function(ctx) { + if (this.x0_ == this.x1_ && this.y0_ == this.y1_ && this.r0_ == this.r1_) { + return null; + } + + var radius = Math.max(this.r0_, this.r1_); + var minRadius = Math.min(this.r0_, this.r1_); + var brushObj = create(ctx, '<RadialGradientBrush MappingMode="Absolute" ' + + 'GradientOrigin="%1,%2" Center="%3,%4" ' + + 'RadiusX="%5" RadiusY="%5"/>', + [this.x0_, this.y0_, this.x1_, this.y1_, radius]); + + var colors = this.colors_.concat(); + + if (this.r1_ < this.r0_) { + // reverse color stop array + colors.reverse(); + for (var i = 0, c; c = colors[i]; i++) { + c.offset = 1 - c.offset; + } + } + + // sort the color stops + colors.sort(function(c1, c2) { + return c1.offset - c2.offset; + }); + + if (minRadius > 0) { + // We need to adjust the color stops since SL always have the inner radius + // at (0, 0) so we change the stops in case the min radius is not 0. + for (var i = 0, c; c = colors[i]; i++) { + c.offset = minRadius / radius + (radius - minRadius) / radius * c.offset; + } + } + + this.createStops_(ctx, brushObj, colors); + return brushObj; + }; + + function CanvasPattern_() {} + + // set up externs + G_vmlCanvasManager = G_vmlCanvasManager_; + CanvasRenderingContext2D = CanvasRenderingContext2D_; + CanvasGradient = CanvasGradient_; + CanvasPattern = CanvasPattern_; + +})(); + +} // if diff -r 99e223f6a132 -r 6eac08f7edcf static/scripts/packed/excanvas.js --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/static/scripts/packed/excanvas.js Fri Aug 22 17:44:32 2008 -0400 @@ -0,0 +1,1 @@ +if(!window.CanvasRenderingContext2D){(function(){var L;var N={init:function(d){var e=d||document;e.createElement("canvas");if(/MSIE/.test(navigator.userAgent)&&!window.opera){var 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1 0

Test is at rev 1533:c77dea3e745a
by Greg Von Kuster 27 Aug '08

27 Aug '08

1 0

Test is at rev 1524:96f8ed6d89cc
by Greg Von Kuster 26 Aug '08

26 Aug '08

1 0

Test is at rev 1523:e68dbb8f6b4c
by Greg Von Kuster 25 Aug '08

25 Aug '08

Thanks, Nate!

1 0

Main is at rev 1476:77f8bf51b2ae
by Greg Von Kuster 22 Aug '08

22 Aug '08

1 0

[hg] galaxy 1477: Fix for dataset_metadata_in_file validator: al...
by greg＠scofield.bx.psu.edu 22 Aug '08

22 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/99e223f6a132 changeset: 1477:99e223f6a132 user: Greg Von Kuster <greg(a)bx.psu.edu> date: Fri Aug 22 11:22:44 2008 -0400 description: Fix for dataset_metadata_in_file validator: all locally cached data files that are columnar must have columns separated by tabs characters, not white space. I've eliminated the 'split' param from the validator as it was causing problems. Extract genomic DNA tool should now finally work correctly. 2 file(s) affected in this change: lib/galaxy/tools/parameters/validation.py tools/extract/extract_genomic_dna.xml diffs (37 lines): diff -r 77f8bf51b2ae -r 99e223f6a132 lib/galaxy/tools/parameters/validation.py --- a/lib/galaxy/tools/parameters/validation.py Fri Aug 22 10:39:58 2008 -0400 +++ b/lib/galaxy/tools/parameters/validation.py Fri Aug 22 11:22:44 2008 -0400 @@ -235,18 +235,17 @@ metadata_name = metadata_name.strip() metadata_column = int( elem.get( "metadata_column", 0 ) ) message = elem.get( "message", "Value for metadata %s was not found in %s." % ( metadata_name, filename ) ) - split = elem.get( "split", None ) line_startswith = elem.get( "line_startswith", None ) if line_startswith: line_startswith = line_startswith.strip() - return cls( filename, metadata_name, metadata_column, message, split, line_startswith ) - def __init__( self, filename, metadata_name, metadata_column, message="Value for metadata not found.", split=None, line_startswith=None ): + return cls( filename, metadata_name, metadata_column, message, line_startswith ) + def __init__( self, filename, metadata_name, metadata_column, message="Value for metadata not found.", line_startswith=None ): self.metadata_name = metadata_name self.message = message self.valid_values = [] for line in open( filename ): if line_startswith is None or line.startswith( line_startswith ): - fields = line.split( split ) + fields = line.split( '\t' ) if metadata_column < len( fields ): self.valid_values.append( fields[metadata_column] ) def validate( self, value, history = None ): diff -r 77f8bf51b2ae -r 99e223f6a132 tools/extract/extract_genomic_dna.xml --- a/tools/extract/extract_genomic_dna.xml Fri Aug 22 10:39:58 2008 -0400 +++ b/tools/extract/extract_genomic_dna.xml Fri Aug 22 11:22:44 2008 -0400 @@ -4,7 +4,7 @@ <inputs> <param format="interval" name="input" type="data" label="Fetch sequences corresponding to Query"> <validator type="unspecified_build" /> - <validator type="dataset_metadata_in_file" filename="alignseq.loc" metadata_name="dbkey" metadata_column="1" message="Sequences are not currently available for the specified build." split="\t" line_startswith="seq" /> + <validator type="dataset_metadata_in_file" filename="alignseq.loc" metadata_name="dbkey" metadata_column="1" message="Sequences are not currently available for the specified build." line_startswith="seq" /> </param> <param name="out_format" type="select" label="Output data type"> <option value="fasta">FASTA</option>

1 0

[hg] galaxy 1476: Better fix for interval_maf_to_merged_fasta wh...
by greg＠scofield.bx.psu.edu 22 Aug '08

22 Aug '08

details: http://www.bx.psu.edu/hg/galaxy/rev/77f8bf51b2ae changeset: 1476:77f8bf51b2ae user: Greg Von Kuster <greg(a)bx.psu.edu> date: Fri Aug 22 10:39:58 2008 -0400 description: Better fix for interval_maf_to_merged_fasta when no strand column in input, added functional test. 4 file(s) affected in this change: test-data/13.bed test-data/interval_maf_to_merged_fasta_out3.fasta tools/maf/interval_maf_to_merged_fasta.py tools/maf/interval_maf_to_merged_fasta.xml diffs (716 lines): diff -r 973d6cbeea87 -r 77f8bf51b2ae test-data/13.bed --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/13.bed Fri Aug 22 10:39:58 2008 -0400 @@ -0,0 +1,96 @@ +chr16 20682314 20682813 ENSG00000005187 +chrX 123339504 123340003 ENSG00000009694 +chr3 52503897 52504396 ENSG00000010327 +chr6 112089190 112089689 ENSG00000010810 +chr6 112089249 112089748 ENSG00000010810 +chr6 112089261 112089760 ENSG00000010810 +chr2 31310208 31310707 ENSG00000013016 +chr22 16598265 16598764 ENSG00000015475 +chr22 16598139 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ENSG00000091972 +chr15 40483770 40484269 ENSG00000092529 +chr15 40427094 40427593 ENSG00000092529 +chr15 40481381 40481880 ENSG00000092529 +chr15 40457707 40458206 ENSG00000092529 +chr15 40438491 40438990 ENSG00000092529 +chr1 120055534 120056033 ENSG00000092621 +chr1 120063274 120063773 ENSG00000092621 +chr6 159106769 159107268 ENSG00000092820 +chr6 159106768 159107267 ENSG00000092820 +chr6 159106766 159107265 ENSG00000092820 +chr9 111041832 111042331 ENSG00000095203 +chr9 110974075 110974574 ENSG00000095203 +chr10 94822723 94823222 ENSG00000095596 +chr10 94823138 94823637 ENSG00000095596 +chr10 29005931 29006430 ENSG00000095739 diff -r 973d6cbeea87 -r 77f8bf51b2ae test-data/interval_maf_to_merged_fasta_out3.fasta --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/interval_maf_to_merged_fasta_out3.fasta Fri Aug 22 10:39:58 2008 -0400 @@ -0,0 +1,480 @@ +>hg18.chr16(+):20682314-20682813 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+AAACATGAAAAAAAATTTTATTGTTTTAGACAAAGAGGCCACTTTTGGAAAATAATACTTTTTTTTTTTTAGTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCTTTTTTAAAAAAGGAAAGCACTGGGATTGTTGGCACAGGAGCAGCTATTTACACTGAACAGAGGTTTGGCCTTTGACATAACATCGATACAATGCATTTCC--AAGTCTGAGAAATAACACGCTTCTGTCTCAGATGGTTCACAGAGGAGGTTCGGACTGGGGGACAAGTGTCATTAATGAGGGCCGTGGAAGT---TCAGCTTCAGAGTCACATGCAATCTGATCCTGGACGGTTCCGCTGCTCTGGGGCAGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTC-GGGAAGAGGC----GTCTGAAGCGCAGGCTCTCACAGGTTTTCACCGGGCTGATACTGGGGCTCTGTGGCCGTAAAGTAGTCCTCC + +>hg18.chr6(+):112089249-112089748 +TTTTTTTTTTTAGTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCATTTTTAAAAAAGGAAAGCACTAGGATTGTTGGCACTGGAGTAACTATTTACACTGAACAGAGGTTTGGCCTTTTACATAACATCGATACAATGCATTTTCCAAAGTCTGAGAAATAACAAGGTTCTGTCTCGAATGCTTCACAGAGGAGGTTCGGATTTGGGGACAAGTGTCATTAATGAGGGCCATGGAAGTTCGTCAGCTTCAGAGTCACATGCAATCTGATCCTGGGCGGTTCCGCTGCTGGGGAGCAGCTGGCTACGGAATTGAAAGCTAATGGGGAGGGGTGGGGCAGCCTCTGGGACAAGGCCTCTCTCCGCAGACCCGGGCCTTACAGGTTTTCACCAGGTTGGTACTGGGGCTCTGTCGCGGTAAAGTAGTCTTCCAGGAAGCTCTGCAAGTACTCAAAAGTGGGGCGTTCTTCAGGGTCCTTTTTCCAGCAGTG +>mm8 +TTTTTTTTTTTAGTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCTTTTTTAAAAAAGGAAAGCACTGGGATTGTTGGCACAGGAGCAGCTATTTACACTGAACAGAGGTTTGGCCTTTGACATAACATCGATACAATGCATTTCC--AAGTCTGAGAAATAACACGCTTCTGTCTCAGATGGTTCACAGAGGAGGTTCGGACTGGGGGACAAGTGTCATTAATGAGGGCCGTGGAAGT---TCAGCTTCAGAGTCACATGCAATCTGATCCTGGACGGTTCCGCTGCTCTGGGGCAGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTC-GGGAAGAGGC----GTCTGAAGCGCAGGCTCTCACAGGTTTTCACCGGGCTGATACTGGGGCTCTGTGGCCGTAAAGTAGTCCTCCAGGAAGCCCTGCAAGTACTCGAAGGTCGGGCGCTCTTCCGGATCCTTTTTCCAGCAGTG + +>hg18.chr6(+):112089261-112089760 +GTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCATTTTTAAAAAAGGAAAGCACTAGGATTGTTGGCACTGGAGTAACTATTTACACTGAACAGAGGTTTGGCCTTTTACATAACATCGATACAATGCATTTTCCAAAGTCTGAGAAATAACAAGGTTCTGTCTCGAATGCTTCACAGAGGAGGTTCGGATTTGGGGACAAGTGTCATTAATGAGGGCCATGGAAGTTCGTCAGCTTCAGAGTCACATGCAATCTGATCCTGGGCGGTTCCGCTGCTGGGGAGCAGCTGGCTACGGAATTGAAAGCTAATGGGGAGGGGTGGGGCAGCCTCTGGGACAAGGCCTCTCTCCGCAGACCCGGGCCTTACAGGTTTTCACCAGGTTGGTACTGGGGCTCTGTCGCGGTAAAGTAGTCTTCCAGGAAGCTCTGCAAGTACTCAAAAGTGGGGCGTTCTTCAGGGTCCTTTTTCCAGCAGTGGATCATGAGCTC +>mm8 +GTTGAATCAGGTGAAGACAGAGTTAAAATCACATAGGATTTGCTTTTTTAAAAAAGGAAAGCACTGGGATTGTTGGCACAGGAGCAGCTATTTACACTGAACAGAGGTTTGGCCTTTGACATAACATCGATACAATGCATTTCC--AAGTCTGAGAAATAACACGCTTCTGTCTCAGATGGTTCACAGAGGAGGTTCGGACTGGGGGACAAGTGTCATTAATGAGGGCCGTGGAAGT---TCAGCTTCAGAGTCACATGCAATCTGATCCTGGACGGTTCCGCTGCTCTGGGGCAGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTC-GGGAAGAGGC----GTCTGAAGCGCAGGCTCTCACAGGTTTTCACCGGGCTGATACTGGGGCTCTGTGGCCGTAAAGTAGTCCTCCAGGAAGCCCTGCAAGTACTCGAAGGTCGGGCGCTCTTCCGGATCCTTTTTCCAGCAGTGGATCATGAGCTC + +>hg18.chr2(+):31310208-31310707 +AAGCAGGGAGTGTGATGAATAGGTCAACTCTGTCCTCGCAGCCGTCCCTGAGAGGGCGCTGTTCCCAAATCGAAGCCCCAGAGGCGGAGACTGAGACACCGGCACTCTCCCACTGGACTGGGTCAGCATCCCTCTCCCCGCGCGGCCGCAGGTCTAGAGCTGAGCGCCTGCCCACAAACATGGCGGCGCCCTGCGCGGCTTCCCGTCGCCGCAACCGTGGGGCCGGCCCTGCCTTGCCAGTACTAGGGGACTTCCTCTGCGCGCCGGCTTCCTGCCCAGCTGGCATTTAAACCACCGCCTGGGGCTGCAGGATGCTGCTGCGGATGCAGAGCTGTCCGCGGGCTGGGCAGCGTCGCCGTCTCCCCTGAGCCGCCTCGGTCCGGCAGGAGCGGAGCCGAAGCATCCCTTGCTGCACGCAGGGCAGAGCAGGCGAGGGCTGGGGGCCGATCGGGGACCCCGGCTTGGGACCCCGGCATCTGGCAGTTTCCTTGCAGGTTCA +>mm8 +AAACAGAG-----------TAGGTCAAGGCTGTCTTAGTCTCCGTCCTTGAGAGGGCGCTGCTCCCAAGTCAAATCCCCAG-GGCTGGGAAAGAAATGCCTGCGCTTTCCCACAGGACTCTGGCAGCAGCTTTTTGCCCGCGCGGCCGCA-----------GAGCGCCTGCCCATAGACATGGCGGCGCCCTCCTTGGCTTCGCGTCGCCCTGACCGTGGAGCTGGCCGGGTTTTGCCAGTTCTCGGGGACTTCCTGCACGT-----------------CTGGCATTTAAACGCGCGCCGGGGGCGGCGGGATGCTGCTGCGGATGCGGAGCTGTGTGA------------GCCGCTGCCTACCCGGCGCAGCCTGGGCTCCGCAGTAGCGGAGCTCGAGCATCCTTTAGTC-----------------------------ATCTATCTGGGGA----GACCTGGAACTCAGGCTT----CGGCTTCCCGGCAGGTTTG + +>hg18.chr22(+):16598265-16598764 +GGGCTCCGTCTACACTGGAAGCAGCTATACAGCTGTGACCACATCGAGCTTTAGCCAGTCACACTTCTGGAACTGTCCGTTCAGTCCATCCCCTAGAGCAAGAAAGGAGAAAAAGCCAGAATCAGCTAGGCTCATTCACAAACCAGGCTCCAGAGCTCTGTGCCACAGTAGAGCAAAGCTGGGGTTTATGCAAAAACATGTTCTCCAGACCCCTGAAGTCCTATCCGTGCATCCTACTTTTTGCTACATGGGGGCAACTGCAAAAACAGGCCGTTCAGGCGGTGAGGTGGGTATTCACATCTCCAAGGCACTGACGGTGTCAGGAGGCCCCTGCTGGGTCAGAGGAATCACGATTCTGCCTCAGCCCTCAGTCTCTGGTAAGCTGTCCATACAGACTGCTGCACACGTCTTGCCCACCCTTTCCCCCTTTACATGGGTGTTGGTAAAAGCTGTCCAGGAATGGTCTCAGGCTTACCTCCTTCCAACAATTCAGCTGGGT +>mm8 +TGGTCGCGGTTCCTCTGGAGGCAGTGTCACCA--------------------------TCGGGCTTGTGCGGGC-TCC--TCAGTCCATCTCCTAAGAAAGAGG---------CAGCAGAGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr22(+):16598139-16598638 +GACATTTTCATTCAAGTATATTAATGTAGATATTTTAAAGTGGGTTATAAGTTTAACATTGTCTTTAAAATAGAAGTCACAGCTATCTTCCAGCCTGTCTTCTCTAGGAACGCTGTTGACATGCCAGGGCTCCGTCTACACTGGAAGCAGCTATACAGCTGTGACCACATCGAGCTTTAGCCAGTCACACTTCTGGAACTGTCCGTTCAGTCCATCCCCTAGAGCAAGAAAGGAGAAAAAGCCAGAATCAGCTAGGCTCATTCACAAACCAGGCTCCAGAGCTCTGTGCCACAGTAGAGCAAAGCTGGGGTTTATGCAAAAACATGTTCTCCAGACCCCTGAAGTCCTATCCGTGCATCCTACTTTTTGCTACATGGGGGCAACTGCAAAAACAGGCCGTTCAGGCGGTGAGGTGGGTATTCACATCTCCAAGGCACTGACGGTGTCAGGAGGCCCCTGCTGGGTCAGAGGAATCACGATTCTGCCTCAGCCCTCAGTC +>mm8 +GA---------------------ACGCAGAGA-TGTCCAGTGAATCACCAGCTTGGCCACCACCTGGAAATAGGAGA--CAGCTGTTCTCTGGCCTGTCTTCAGGCCAAGGTCTTTC-------CATGGTCGCGGTTCCTCTGGAGGCAGTGTCACCA--------------------------TCGGGCTTGTGCGGGC-TCC--TCAGTCCATCTCCTAAGAAAGAGG---------CAGCAGAGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr22(+):16596941-16597440 +CCACACTGCGCGGCAGCACTTCTTTTTAGTATTTGTAAGCTTTTGCCCACTTTCAATTGAGCCAGCCCTAGCGTGGTATGTATTGCATGCTGAACAATATAGAGTTTGTTTTTCCTTTCTGATGATTTTAAACTCTTAAAGAACAGGAAAGCATCTGGTAAGAAGAAATCATGAGTCCGTCAGTGCCCTTACTCATATGCGTCTCCAGTGGCCTCATGTTGTGGTCACAGGAGTTTCCTGTTCACAGCAATGTGTGTGATATGGACCCAGCATCCACTGTCGTGCTTTTAAACTGATTCCTGGGACATAGCTTACCACTGGAACAGCAGACCAGTGTTGCACTGTTTCTAAAGCTAAGCTTTTCCTTATTTATTTTGGTACTACCTAAGTGACTTGGTTTTGACTGTCCCTAAGAGAGGGAACCACTTTGCTGAATTTTTAAAAAGTCCAACTGCTCTTTCATCTTTTATGCTTAGAAACCTGTTCTCTCCAGATGCAC +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr22(+):16596908-16597407 +GTGTTAGGAAGATTTATTTCCAAACAGTGGCCTCCACACTGCGCGGCAGCACTTCTTTTTAGTATTTGTAAGCTTTTGCCCACTTTCAATTGAGCCAGCCCTAGCGTGGTATGTATTGCATGCTGAACAATATAGAGTTTGTTTTTCCTTTCTGATGATTTTAAACTCTTAAAGAACAGGAAAGCATCTGGTAAGAAGAAATCATGAGTCCGTCAGTGCCCTTACTCATATGCGTCTCCAGTGGCCTCATGTTGTGGTCACAGGAGTTTCCTGTTCACAGCAATGTGTGTGATATGGACCCAGCATCCACTGTCGTGCTTTTAAACTGATTCCTGGGACATAGCTTACCACTGGAACAGCAGACCAGTGTTGCACTGTTTCTAAAGCTAAGCTTTTCCTTATTTATTTTGGTACTACCTAAGTGACTTGGTTTTGACTGTCCCTAAGAGAGGGAACCACTTTGCTGAATTTTTAAAAAGTCCAACTGCTCTTTCATCTT +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr12(+):101335726-101336225 +CATTTTCCTTTTTTGCCTCTGCATTCAGCATTTCTACTTCCAATCTCCCTCCTCTGCTCTTTCTTCTTTCCTCTGATCTGCAGACTTGCTTCTGTCCCCTCCTTCTGTTCCCctcctggatgtgtctttggccaacctttccttctctgagacttcgtgttcttgttggtagatgggggctgatactgtaaacatcacaaaaataATTGCATTGAGAACAAGTGGTTCCCATGGTGTCCCTTTGAATGAGCTCAGAATGCCCAGGCTCCATATGATGCAGGAGACAGCACTCATGCTGGAGAGGGGTCTAGACCTCAGTCACAAGACCCACCATTCCAGAACTTTGGGACTCATCTCTTGACACCTACCCCCTCCCCAGTTAGAAACCAAGAGGCGCTGGGTCACCTGGGAAGAGAAAGAATGAATCTGCCTTTGCCCCAGCAAGCACGCTTTCCTGCCACATTCACCTAAAAGTCTTTTCTGAGATCCTTGCTTCCTG +>mm8 +--ATGTCCCTCTTTGCCTGCTTGCTCACAGTTCCTAGC-CCAGTCTTTTTTCTCTG----------GGACCTCTGATTTTCCGAGTTGCCTCCGTTACCTCCTCCTGTTCCCCTTCTGGGTGTGTCTTTGGCTCACCTTTCCTTCTCTGCAGCTTCGTTTTCTTGTTTGTCGATAGGGACGGGGACTGCAAACATCACAAAAATAATTGCATTGAGAACGGGTGGCTCCTGTG-----TCTTTGAATCTGCCCAGAATGCCTGGGCTCCATAGGAAACAGAAGCTAGCTTTACTGCTGGAGAGGGTTCTACACCTCAGGCACCAGAGCCGAGGTGCCCGAGCTTTGCGCCTTATCTC-TAATACCCACTTCCTCTTCAGCT---------------------------AGAAGGAACA---------------------------CTCCTTTTCCCTTAATTTGCACAGTGATATCCTTTCTGACTCTTGTGCCCACCG + +>hg18.chr12(+):101320236-101320735 +ATCACTCCTAAAGACAATGTTGGAATGTTTACTTGTGTATTTCATTGGGGGAAACGCCCATCTTTTAAATGTTATCAAACTTATTTTTTGGTAGGTGTTCCAAAGTTTAACAGGTAACTCGTGCAGAGCAAAGGATCCTGCGGTGGCATGTCACTCTTCACTCCTCAGGAGGGTCTTCCTACATCCTGTAGTTCTTGTTTCCTGCACTCCCTCTACTTGCGTTCTTCAAATGTACTTCCTATAAATAAAGGAGAAAAAGTGACATTAACTTGATGAAGTTTTATGTATCCATCTATTTCTAACATTGGGCCTCAACCTTCCATGTCTTACGCCTTACCAGTTGAGCTAATAGAGAGCTTGAACCTTGGTTTTCCTGAGAAGGGCATGTATAGGTGGACAGGCCCTTAGTACTTTTGCCAAACCTCACTCAGGCATCTTCTATGTACCCCTGGTGGCGTGAATACCACAGACAGCTTTATAATCACACAAAGATGAGATT +>mm8 +AGCACTCCTAAAGACGATGTTGGAATGTTTACTTGTATATTTCATTGGGGGAAATGCCCATCTTTGTAATGTTATTGGACTTATTATTTGGTAGGTGTTTCGATGTTTTGCAGGTTGCTCAAGC--AGCAAAGGATCCTGCGGTGATGTGGCATTTTCTGCTCCGTGGGAGGCTCCTCCTACATTCTGTAGGTCTTGTTTCCTGCACTTCCTCTACTTGTGTTCTTCAAATGTACTTCCTGCAAATAAGAAAGATAAGCGGCCATTAAGTTGTTGTGGTTTTCTATATCCAT----TTCTAACACTGGCCCTCAGCCTTTTGTATCTTATGCCTCACCAACCTATCTTAAGGAGGGTTTGAGTCTTGAATTCTTTGAGAA----ACATACAGATGGTCAGGTCTTTAGTTAATTCAACCAAACTTGACCTGGCT--CTAGGAGCACCCA---TAGCATAGGTACC----ATTGCTTCATAATTACACCAAGAGGCTACC + +>hg18.chr12(+):101320163-101320662 +TTTTCTATAGAACATTATTGATAAAAGATCAACAGCAATCTACCAACTCCAGGACCATTTTTGCAAGGTGCAAATCACTCCTAAAGACAATGTTGGAATGTTTACTTGTGTATTTCATTGGGGGAAACGCCCATCTTTTAAATGTTATCAAACTTATTTTTTGGTAGGTGTTCCAAAGTTTAACAGGTAACTCGTGCAGAGCAAAGGATCCTGCGGTGGCATGTCACTCTTCACTCCTCAGGAGGGTCTTCCTACATCCTGTAGTTCTTGTTTCCTGCACTCCCTCTACTTGCGTTCTTCAAATGTACTTCCTATAAATAAAGGAGAAAAAGTGACATTAACTTGATGAAGTTTTATGTATCCATCTATTTCTAACATTGGGCCTCAACCTTCCATGTCTTACGCCTTACCAGTTGAGCTAATAGAGAGCTTGAACCTTGGTTTTCCTGAGAAGGGCATGTATAGGTGGACAGGCCCTTAGTACTTTTGCCAAACCTCA +>mm8 +TTCTCTATAGAATGTTATTGATAAAGGACCAACAGCAATCTACCCACGCCAGGACCACTTTTGCAAGGTGCAAAGCACTCCTAAAGACGATGTTGGAATGTTTACTTGTATATTTCATTGGGGGAAATGCCCATCTTTGTAATGTTATTGGACTTATTATTTGGTAGGTGTTTCGATGTTTTGCAGGTTGCTCAAGC--AGCAAAGGATCCTGCGGTGATGTGGCATTTTCTGCTCCGTGGGAGGCTCCTCCTACATTCTGTAGGTCTTGTTTCCTGCACTTCCTCTACTTGTGTTCTTCAAATGTACTTCCTGCAAATAAGAAAGATAAGCGGCCATTAAGTTGTTGTGGTTTTCTATATCCAT----TTCTAACACTGGCCCTCAGCCTTTTGTATCTTATGCCTCACCAACCTATCTTAAGGAGGGTTTGAGTCTTGAATTCTTTGAGAA----ACATACAGATGGTCAGGTCTTTAGTTAATTCAACCAAACTTG + +>hg18.chr12(+):101313809-101314308 +ATTACTAAAGAAAGATATACCATTTTATTATGACACTCTAGCCATACATTTTCAAAATATGCTTATTAAACAGTAAATGTAAGATAATGATTCAATTAGTTACATTTTTAGAAGTCATTAGGATTGATATTCCTCTGCCATAAGTGAATTGAATAATAATTTCAAATACAATCAGaattaatttaataaaaaatatGCTTTTCAACTAAGACAGATGTAACGAATGGCCAGTCATTATTTTCTGGTTTCAAAGTAGCAGGGGAAATTAATTCAGTGTCTGTAAGTTTATTTATCACACTTGGCCTATAAGTGTGATAAAAATACATGAGGCAAAATACATGATGTAATCCCAATTCTCATAGTTCATTAACTCTTTTACCAAAAAGATCTGACATGGTATTTGGGGCCTTTATGTAAACTGAATATAAGCTGCGTGATATTTGAAAGGTTTTGATATTTTGAATAGACATTTTCATGATACACAGACACAGATAAAAGA +>mm8 +ATTACTAAAGAAAGATATACCATTTTATTATGACACTCTAGCCATACAATTTCAAAATATGCTTACTAAACAGTAAATGTAAGATAATGATTCAGTTAGTTACATTTTTAAGAGTCATTAGGACAGATATTGCTCTGCCATAAATGAATTGAATAACCACTTCAAATACAATCAGGAGTAATTTGATAGAAGATTTTTTTTTGTG-TAAAACACATACAATGAATGACCAAATATTACTTTCAGGTTTC-----AGTAGGG-AAATCAATTCAGTGTCTGTAAGT-TAATCATCACCCTTGGCCTTTAAGTGTGATAAAAATAAATGAAGCAAAATGTGCGTTGTAATCCAGATTCCCATAGCTCCTTAAATCT-TTAACAAAGAGATCTGATATGCTATTTGGAGCTTTCCTGTAAACTTAATATACACTGTATGATGTTTGCAAG----------------------GTTTAAGGATACAGAGACACCGATAGGAGA + +>hg18.chr7(+):99282701-99283200 +TTCTGCTTTGCACAACCCTGGAGGAGTTGCTAGGTCTTGTTCCCATCTATTCTACTGGAAGAACTGGTTCTCTTCCACGTGGAAACCATGCATTTAAAAGGAAACTGGGATATAGTGACTGGAAACCACACCATTTGCCTTGATTCCACCATCCCCCTTCCATATGCTTACAGGAGGCTACACATTCAAGATAAATCTTTATTGagcatctagtatagagcctgccacccagtagatagttactaaatatttgttaaattcatgaTGCCTGTTTAACACATTTTCTACAACTATGGAGATCTCTAAAACTTACGTAGGACAAACTGCTTCTGCTTTGAACTCAAGCCTTTAGGTCCAATGGGATTTCTGAAAAGTGCCTTAAGTTTTGCTGAAGATGAAGAATGGAAGAGAATACGAACATTGCTATCTCCAGCTTTCACCAGTGTAAAATTCAAGGAAGTAAGAAAATAAGGTGATTTATAATTAGAAACTTAAAGGA +>mm8 +TCTTTTTTTGCAAATGCTTGAAAGACACTGCAGGGCTGG--CCTAT----TCTCATGGA-------------TTCTGCAAGGGCGATTTTCATTTAAAGTGAGATGGTCATAGAAAGATGTGAAGCTGTGCCAGATGGATAGATATCACCTTCA----TTTATAGGATTACAGAAATTTTCA--------GTAGAAGATTGTTGAACATCTAGTA-AGATCCAGAAAATT-----ATAGT-----AATGTTTGTTAAATAAATGATGCTTGTTTAATATACTTTCTAAAATTGTGAAGATTATCATAATTTTAATATGATAACCTTCTTTCCATTTGAACCTTAGTTTTTTGGGCCAGTGGGATTCATGAAAAAGGCCATTACCATATCTGAGGATGAAGAATGGAAGAGACTTAGAACACTCCTGTCTCCAACCTTCACCAGTGGCAAACTCAAGGAGGTGATTAGAGAGGGTGTTC-----------ACTTAAGGAA + +>hg18.chr7(+):99263073-99263572 +gctttctaaaaagaattatttttatttgggaataaagcattgcaatgggaatatgcgtgccaaggtaaactatgtgcttattcaggtaggtaaagtaagacaaagtttaaaaaaataatgagaaggattacatatttgttttggaatgattatccttggctataaagatcaataacaagactgacatcagtttgaggttggacaggcagttgctgggcagatgttcttgcagaagtatttttctttaggttCCTGAGAATCTATAACCTTTGGGCTTACCAATAGCAGTGACTGATTTGTTTACTGATTGTTCACAGAATAGGAAATCAAAGGAGGCCAAAATAAGGACAGCCATAATTATTTGCCAATTGTCAATTTGAAAAGGGTACCCAAATCCCTCCATATGAGGAGTAGCATAAGTGGCTTTTCTACTGGCTGCCGCTGTAGACCCACCTCCTTCTCCAGCACATAAATATCGCTGTTAACATTAACTAAATCA +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGAATATAAGCTCAAAGG---TCAGAGTAAGAAAATGCATGACCCTTTGACAAATGCCAGGTGAGAAGCCACACCAGACCTACAAGTT--CGAGCATTGTGCAAGTGGCCCTTGTACTGGCTGAATCCCTGTAACCTCCTCCTTTCCCAGCAAATAA-----ATAGACTGGCCTCACTAGATGC + +>hg18.chr19(+):38013262-38013761 +ACATCTGAGTATATTTTATTCGTAAGAAAAAAAGGAAGAAATAACCACAAATATTGCTTAAGAAAATAAATTCAGCTGACTTGGCTACAAGAGACGGAGCTTGTTACTCAGGGTCTTCCTCCGGTGGGACCACTTCCATTAGCATCTGAAGGTGCATGGTAATCGGCTCTGAAATAAGAGTCAAAAATGAGTACAGTTAGTTAGACTGAAATTCGAAAGTTTCACTGGAGTTGTTGTGGGTGAGGGTGACATTGTTTTCAGTCTTTGGTGATGCGTCACCTAGACCCTGTGCTCAGGATGGCCAGCTTTCCTGCCTTCTGGTTGGATTTCACACTTTCCTGGCTTCTGTCTTCTCCCAGAATTGCAGGAATAGAAATAAAAACCTCCTAGGAGTGTCCGGAGGGACGACTGCACTTTCCAGTTCAGATGAGCTGAACAGGAGAAACAGGCAGGCTTTTAATCACATTCACTTAATAAATCTTAACTGGCTGTTACAGGC +>mm8 +ATATCTGAATACATGTTTTCATTAAGAAAAACAGGAAGAAATAACCACAAATATTGCTTACAAAAATAAATTCAGCTG----GGCTACGAGTGATGGA-CCTTTTACTCTGGGTCCTTTTCTGGTGGGACGACTTCCATGAGCATCTGCAGGTGCTTTGTGACCGGCCCTGGAACAGAAGCGAGGCATAGGTGCAGTTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTAACCACAGTCACTCAGTTAACACTAAGTGGCTGTAGTGCAC + +>hg18.chr3(+):52206685-52207184 +CAGGACCACTCCATTTGTGGGCGATATAGCCAGCTCCACCTCCTCCGGGAAGCCCTTGTTCACAGTTTCCAAAGCAAGCCGCAGGCGGGATGGATCCTGCTTAACACCCCGGCCCAGAACCCCTTGGATCTCCTTCTTCCTCCATGTCCAAGACACCCAGCTTAACAACCCTGTAGCCCCCAACTTGGCCCTAGCGGCACCTCGCCTCGACCTTGCCATTTTATACTCAATTGGGGCGTAGGGTTCTGAAGCCCAGGGTAGTTGGTGGGGAGGCAGCACGAGGGTGCAGGATGAGGTCGGGAAAAGAGACCTCGTCCGCCCACCGCCTAGCGCTTCCTCCTCCCTGCAGGCGAGCCGGGGAATCCCCGGCAGCACCGATATCCGCAGAGCCCAAGAAGTGGGCCTCTCTGCCCCGCCCCCCCGGCTCGCCGAGGGCTACGCGGCGCGCCTGCGCAGAAGAAGGCAGCGCCCAAGGCGCATGCGCAGCGGTCACTCCCGC +>mm8 +CTGGGCCATTATATTCTTGGGCCATCCATCCA-------TGCAGCAAAGAAG--GTCTGTCATCGAAGCAAAGGCAAGCCCTTCGTTGATCGGAT----CTTAAGACCCTGGCCCGAAA-CCC------------CTTCCTATATGCCCAATAAACCCA-TTT-------TTTTAGCCTGTAG-ATTTCCCCGGGTGGGGTTGGTTTCGACCT--------------CAGCGGGGGCGCAGGAGTCTGACGCATAGGGCTGTTCG-TAGAAGGAGACAAGGGACGAAGGGAAGGGATCCAAA-AAGGGACTTGCCCCGTCCACCGCCCTGCGCTCTTGGCTCC------GGCAGCGTAGG-----CCTGAGACATAGTCAGTTGGAGAGGAACAGAGAGGGACCCTGGCACCTTGCCGGGCCGGCTTC-----GG------CGCGCGCGTGCGC-GCGGCAGGCCGCACCCAAGGCGCATGCGCGGCGGTCACTCCGGC + +>hg18.chr3(+):52206657-52207156 +TGAGTGTCCCGCTTCTTCCGCATCCTGCCAGGACCACTCCATTTGTGGGCGATATAGCCAGCTCCACCTCCTCCGGGAAGCCCTTGTTCACAGTTTCCAAAGCAAGCCGCAGGCGGGATGGATCCTGCTTAACACCCCGGCCCAGAACCCCTTGGATCTCCTTCTTCCTCCATGTCCAAGACACCCAGCTTAACAACCCTGTAGCCCCCAACTTGGCCCTAGCGGCACCTCGCCTCGACCTTGCCATTTTATACTCAATTGGGGCGTAGGGTTCTGAAGCCCAGGGTAGTTGGTGGGGAGGCAGCACGAGGGTGCAGGATGAGGTCGGGAAAAGAGACCTCGTCCGCCCACCGCCTAGCGCTTCCTCCTCCCTGCAGGCGAGCCGGGGAATCCCCGGCAGCACCGATATCCGCAGAGCCCAAGAAGTGGGCCTCTCTGCCCCGCCCCCCCGGCTCGCCGAGGGCTACGCGGCGCGCCTGCGCAGAAGAAGGCAGCGCCC +>mm8 +TGGGCTCCCTTCTTCCGCAGCCTCTCTCCTGGGCCATTATATTCTTGGGCCATCCATCCA-------TGCAGCAAAGAAG--GTCTGTCATCGAAGCAAAGGCAAGCCCTTCGTTGATCGGAT----CTTAAGACCCTGGCCCGAAA-CCC------------CTTCCTATATGCCCAATAAACCCA-TTT-------TTTTAGCCTGTAG-ATTTCCCCGGGTGGGGTTGGTTTCGACCT--------------CAGCGGGGGCGCAGGAGTCTGACGCATAGGGCTGTTCG-TAGAAGGAGACAAGGGACGAAGGGAAGGGATCCAAA-AAGGGACTTGCCCCGTCCACCGCCCTGCGCTCTTGGCTCC------GGCAGCGTAGG-----CCTGAGACATAGTCAGTTGGAGAGGAACAGAGAGGGACCCTGGCACCTTGCCGGGCCGGCTTC-----GG------CGCGCGCGTGCGC-GCGGCAGGCCGCACCC + +>hg18.chr10(+):101532011-101532510 +TATATAACATATAGGCTCACACTGGATAAGCTATTTTATAACCTGACTTCTTCAAAGAAAGTTTACATCATGTTTAAACCATGTTTTAGATTCTATATTTTTAATTAAAAATCTAAGGAAGAAGGATATTTCACATTTCTATAAACTCTAAGATCTTGCAGCAGAAGCGAAACTGCACATTTAGGGGTGCCTGCCCCTCTACTGATGCTGCCCTTTGTGGGTCATATGTCCTTAGGAAAATGAAAGACTGTGCACTCTTGATTTGTTGGCCAGCTCTGTTGACATCTTTCAGTGGTTCCTTTTATGTATGGCCACTCCTACAGAGGCCTCTTGTACTTTGGGAACTGGTGAGTCTCCCTGTCCCTAGGGCTTTTTAGTCACATGTCCATCCACTGTTTCAATGTAACATGCATCTAGGCAAGGTTAACGATTAAATGGTTGGGATGAAAGGTCATCCTTTACGGAGAACATCAGAATGGTAGATAATTCCTGTTCCACT +>mm8 +T-------TCATTGATCCACAATGCTTTCGCTCTTTTATAACTTGACTTTTTCAAACAAAGTTTATATTAC-TTTAAACCGTGTTTTATGTTTTAAGTTCTTAATCAAAA----AACTCAGAGGGGTATTTAACATCTCTGTGAACTCTTAGAGTTC-AAACTGAAGTAAAACCCCACATGCAGGGATGCATAGGTTGTGTACTGGACT-TCCGACCT--------------------------------------------------GCCAACTGCATTAATGTCTCTGATTGGTTCTTTCTAGATTTGGTCACA-CTACAGGGGC----AGGGCTTTGAGAAGTGATAAGCCTCCCAGTATCTGGTGATTCCCAGTCACATGTCTGCTCACTGGGATGACATAGCATTCATC-TAGCAAAGTTAACTATTAAGTTGTCAGGATGAAAGGTCAGCCTTTAATCAG----TGAGGATGGAAAGCAATTGCTCATCTGCT + +>hg18.chr10(+):101531994-101532493 +TGAAAGCCTGTATTATGTATATAACATATAGGCTCACACTGGATAAGCTATTTTATAACCTGACTTCTTCAAAGAAAGTTTACATCATGTTTAAACCATGTTTTAGATTCTATATTTTTAATTAAAAATCTAAGGAAGAAGGATATTTCACATTTCTATAAACTCTAAGATCTTGCAGCAGAAGCGAAACTGCACATTTAGGGGTGCCTGCCCCTCTACTGATGCTGCCCTTTGTGGGTCATATGTCCTTAGGAAAATGAAAGACTGTGCACTCTTGATTTGTTGGCCAGCTCTGTTGACATCTTTCAGTGGTTCCTTTTATGTATGGCCACTCCTACAGAGGCCTCTTGTACTTTGGGAACTGGTGAGTCTCCCTGTCCCTAGGGCTTTTTAGTCACATGTCCATCCACTGTTTCAATGTAACATGCATCTAGGCAAGGTTAACGATTAAATGGTTGGGATGAAAGGTCATCCTTTACGGAGAACATCAGAATGGTAG +>mm8 +--------CAAATTATGT-------TCATTGATCCACAATGCTTTCGCTCTTTTATAACTTGACTTTTTCAAACAAAGTTTATATTAC-TTTAAACCGTGTTTTATGTTTTAAGTTCTTAATCAAAA----AACTCAGAGGGGTATTTAACATCTCTGTGAACTCTTAGAGTTC-AAACTGAAGTAAAACCCCACATGCAGGGATGCATAGGTTGTGTACTGGACT-TCCGACCT--------------------------------------------------GCCAACTGCATTAATGTCTCTGATTGGTTCTTTCTAGATTTGGTCACA-CTACAGGGGC----AGGGCTTTGAGAAGTGATAAGCCTCCCAGTATCTGGTGATTCCCAGTCACATGTCTGCTCACTGGGATGACATAGCATTCATC-TAGCAAAGTTAACTATTAAGTTGTCAGGATGAAAGGTCAGCCTTTAATCAG----TGAGGATGGAAA + +>hg18.chr5(+):71651457-71651956 +CCACCCCAACACATAAATCTGGCGAATCATACGCAAATTCCCTCATGCTATATAACCTTCCACTGCTCTTCGTACCTTTGGACAGGAACATACTGTTATTTTAGGGAAGGAAATGGATCAGATACCTTGTCTCCTTCTTCTGCACTACCAAACACCCCAAATGGCGTCCCTAGCAATCAGATTCCAGAAACGTTTCCTCTCCTCTTGAAAGCCCACCGCTCCCTTCACCCAAAAAACAGAATAATCAGGGGCCTAATGAAGCTGTCCGGCCAACCTGCAGGAGAGAGCTGAGGAAGAACCACTTGCCGCGCCAGGAGCATCCCGCGCCGCACTATGGAGGCAGCCATCTTGGAGCGTACCAAAAGGAACAGCCAACGGGTTACGGACAGAGGAAGGGGCGGGGTTACAGCTCGACCTCTCGGGGCGCCCAGAATTGGACGAATCCCTTTTGTCGCTCTCGACGACAGGACCGACGCTCCGCCTCCTCGCCCCGGTTCCA +>mm8 +CTAATTTAATACATTAAACTTGCAAGACATACGCAGA--ACCTCATGC--TACAGCCTTCCCCTACTTTTCAAAAGTTTGGAATGGCGGGTACTAGCCTT-----AAAGAAGAGGGA---------TTATTTTTCCTTTCTGGGTT-ACCAATACCCTAAACGGCTTCTCTAGCAACCGGATCCCAGACGCACTTATGCGCTTCCTGGAAGCCCATCACCCCCTTCCTTCAATAAACAGCGTGCTGGGAGGCCTAATGGAGCTGCACCACCAACCTGCGAGGCAAAGGCGAGACGCGTCTAGTCGCCGAGCCAGGAGCATCCCACACCGCACCATGGGAGCCGCCATCTTGGAGCGCACCAAGTGGA----------AGGCGGGCGTGGG----GGGACAGGCACAGAGCCCGCCTCCGC--------CGGAAGTGGTCCTAC---------CACCTCAGA-G----------------GTCCCCCCTGCCCGGGTCCC + +>hg18.chr3(+):52796382-52796881 +TCCGTCCCCTGAGCCGCCCTTCTCCACATCACCGCGAACTCCCTGCTGCGCTTTGTGAGCTTTTGTGCAGGCTGAACCCCCAGCAGCCTCCACTGGTCCCCTCTTGGTGTGAGTGTATGTCTGTGAGGAGGCAGGACCCCAGGGGAGGGCTGAGACCCCCAGAGGGACGGCTGGGCCCAGGCCTGTTGTGGACAGAGCTGCATGCCTTTCGTGTGGGGCACCGTGGGTGACACTGTCTTCGATAATATGTCCTTGTCTTCTACAGAGATGCTGGGACCCAGAAGGAGTAAGTGGCAGCCATCCTGGCCATTCACATCTCTACCCCTCCTTGATGATCACCCCGTTGGCTTTCTTCCTCCGTTCTAGCTGTCTTCACTGCTTGTCACTGGGAATCTTTAGAACAGACCTCTGAACAGCCTGGCCTCCCCAGCCTGAGGTCCCTGGGGGAGGAGACAGAGAGGGGGCCAGCTAAACATGCCAGGCCAAGCTTCTGTCCCCG +>mm8 +TCTG-------------------------------AATCTCAGGGCTGTGCATCACGAGCCTTT-----GCCTTCCCTCG----GGTCTCCATCAAGCCCCTCTCCCCG---GTGTCTATCTGAG-GAAGTCGAGGGCATTTGAGAGGGCTGAG-CCTACAGTAGTTCATCT----CTCACCCTGTTGAGGAGTGAGCTACATGCCCTGGAGGTGGGGTATC-AGAGTAACAGTGTTT-----------TCCTTGTCTTTTGCAGAGATGGTGGGACCCAGAAGAAGTAAGTGGTAGCCATCTTGGGGACCCCCTTCTTCACCCCTTCCTCCTACTTACCCTGTTGGCTAGCTAGCTCTGCCCTGGCTATCACTAGCTCTGGTTCCTGGGATTCCTTAGGACAAGCCTCCGTACAGCTTGGCTTTCCCAG-----GGTCCCCATTATAAAAGACATA--GGAGGCCAGGTCATCTCCTAGGACCAAACTTTTGTACCCA + +>hg18.chr3(+):52786149-52786648 +atcccagctactcgggaggctgaggcaggagaatcacttgaacccaggaggtggaggttgcactgagccaagatcctgccactgcactctagcactcaagaccaaaactccatctcaaaaaaaaaaaagtaaaGCCTAATGAAGTTTAGAAATCCATTTTTAACTGTTGCTTCTTGCCACATGTCACCGTGTCACTGGTGCTGCCTTGTGCCAGCCCGAGGATGAGATGAGCCATCCGGGGATCCTCACAGTTCACATAGGCTAAGCGCAGTTCTACACAGAGGGACATGGTCTGGAGCCCCATCAGTAGTTTAACCACCCAGAGCTGGGAACCCCCCTGAGGCAAAAAGCTTCCACTGCCAAATTTTGATTCCTCTAAATGTGttaggttgatgcaaaagtcattgcggtttttgtcattaaTATTTGCCTGCACCTTGTCTAATGTTTAATCCATGTTTATCCAGCACTGTATTGATTACTGGTCTGACTGAGGTGA +>mm8 +---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTGCCTCCGCTGTGTCTAATGTTTAAACTGTGTTTGTCCAGCACAGTATTAACTAACAGTCTGAGGGAAGTGA + +>hg18.chr6(+):166698400-166698899 +ACAAATATTTAAATCATTTATTGCCATTAAGTTACAGCATCTCAATATATACACTGCATGGAAATACACAGGTAACATTTTTAAACAGTGGGGACAAAATTTTAAGTACGTGGCCAGCTGTTGGTTGTCTTGTGGTCATTAAAGACAATGTTAAGAATCAGGAGTACTTAAGTGCTAGTGGTTACAAATTTTGTTCTCTTCAGTTTTTCATTAAGTAAATTCTAATAGATGATATACATATTACTGCAGATAAAACCATCATCAGAAATTATTAAATTAATTGCATATTTTGAGCTACTCTTTATGGAAAGAAGTAAAATATTTAATACTTGTAAGGCAGCAGAGAGTTGGTTTAGAAACTCTCAGCTATTTCTATAAAAATAGAATGGTTAGTAAAAATAGCATTCAGTGTATTTTCCTTAGGGAGGCTATTTATAATGAAATCTGTGACTCAGCAGCAGCTGGCAATGCTGTCCCTTCAAGACCTTGTTCTTCCTTT +>mm8 +GCAAATATTTAAACCATTTATTGCCATTAAGTTACAG-ATCTGAGT-TACA-----TATGGAAA-ACACCGAT---ACTTGTTATCACTGGAAATTATG-TGTAGACATGTGACCAACTGAGGGTT-TACTATTGTCATTAAAGAAAAAGTCAAGAATTTTGAGTACTTAAGTGCTTGTAGTTATAAATTTTGTTCCCTTAGATTTTTTATTACACAAATCCCAATAGATAATATACATATTACTACAGATAAAACCATCATTCAAAATTATTAAATTAGTTGCATATTTTGAACTACTCTTGATGAAGACAAATAAG--GTTTAGCATTGATAAGGCAGCAGAGAGTGGGTTTAGGGACTCTCGGCTAT-TCAATAATGTTGGCATGGTCATT-AAGATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGAGATCTGTGGCTCAGCAGTGGCTGG-AGCACTGTCTCTTCAAGAGCTGGTCC------T + +>hg18.chr6(+):166698708-166699207 +AAGAAGTAAAATATTTAATACTTGTAAGGCAGCAGAGAGTTGGTTTAGAAACTCTCAGCTATTTCTATAAAAATAGAATGGTTAGTAAAAATAGCATTCAGTGTATTTTCCTTAGGGAGGCTATTTATAATGAAATCTGTGACTCAGCAGCAGCTGGCAATGCTGTCCCTTCAAGACCTTGTTCTTCCTTTTCCATTGTTATGCAGATGCCGTTTTAGTCATCCTGGAAAGAAACAAAAAGAAAAATTCAATGAGAAACAAAATTTCAATGCCAATCGCAAGGGCTTTGGATGGCTTTTAAAAGACACCTTTACATAACATTTATTTCAACTTACAACTTATAAAAACAATAATATaggttgggtatccctcatctgaaatgcttaggcccagacatgtttcagattttttcagatttcggaataactggattataccagttgaacatccctaaactgaaaatccaaaatccaaaatgctccaatgagcacttcctttg +>mm8 +GACAAATAAG--GTTTAGCATTGATAAGGCAGCAGAGAGTGGGTTTAGGGACTCTCGGCTAT-TCAATAATGTTGGCATGGTCATT-AAGATAGCATTCTGTGTTTTCCCTTCAGCACGACTACTCATGCTGAGATCTGTGGCTCAGCAGTGGCTGG-AGCACTGTCTCTTCAAGAGCTGGTCC------TTGTACCGCTATGCAGATGGCCGCTTACTCATCCTGGAAATAATT--GGAGACAATTTCAATGAGACACAAAGTCTA-CCGCCAGTCCCAGAGGCTCTGCATGGCTTTAGAA-GACAAGTTTCTATAACATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr16(+):2029817-2030316 +CATCTGCAAACACACCAAAGCTTTATTCAACAGGCGTGGCTTCCTGAAGCGTAAAGCCACTTCACAGACGGTGGCCACAGCGGCACCTCGGCCAGAGCCATGCGGCCATCAGAGACCCTGGGCGGCCGGGCAGAGGGCTTGGTTGAGGCAGGCGTGGCAGCGAGGGTGCACAGGCAGACAGGTCTGCTGGCCGAAGCCCACCAAGAGTCCATTGATCTCGTGCCACAGCTCCCTGTGGGGGTGGGGGCTGGGTCAGTGCTGACAGAGGGCGGGCGGGGTGAGCTCTTCTCCCTAGGAAGCCCCCCACATACTCATACCTAGGCAGCCACTCCTCCAGGGCGGCGCGGGTCTCCTCTGGGGACTTGGTTGCCTTCTTGGTCCACCTCAGCCTGTTGGCGATTCTGTGCACATGCGTGTCCACTGCTGCTGGGAGGCCAAGCGGGGTGAACAGGGGCACACTCCACCAGCCTAGCCCGTGCCCCTCCCCGCCCAGAGGCGA +>mm8 +CAGGTGCAAACACCCCCAAAGTTTACCACCCCGCC---------------------------------------CCACAAAGGCACCTCAGAGGAAGCCCTATGGCCCTTAGAGATCCTGGGCAGCAGGGCACAGGGCCTTGTTGAGGCAAGCCTGACATCGAGGATGGACAGGAAGACAGATCTGTTGGCCGAAGCCTACCAGTAGTCCGTTGACCTCACTCCACAGCACCCTGTGAGGGTAAGAGAAAGGTCAGT-------GTGGATGACAGCAGGACACCTCCCTCCCCCAAGCTCACCAAGCTACACTGTACCTGGGTAGCCACTCTTCCAAGTTCTTACGTGTCTCTTCTGGGGTCTTGGTCATCTTCTTGGTCCACCTCAGTCGGTTGGCTATTCTGTGCACATGTGTGTCCACTGCTGCTTGGAGACAAGGCAGGCTGACC--AAGGGCACTCTGCCAG-CTGGGCTGTGTCCCCCCCGGTCCTAAGGTGT + +>hg18.chr10(+):126075862-126076361 +ACATTTGAAATATAAGCTTTATTTTAAATTTAAAGAAGTATTGAAAATAAACATTTTTTACAAATTATAATCAAGCACTCAAAACAATTTAGGAATGTTAAACACTAATTCTTAATTCAAAATAATGACATCCATAGAATACAACCCTGGTGTTGGCCAATATGAAGTTTACTTAATATTAGTATTTTATATACACTTAACCATTAATCCTTCCTAAAATTCAATAACAATGATTTCACTTTATAAGATGAAGCCTTTTATGCAATACCCAGAGATAACTTTTTCAAATATGAAACACTTATACCAGTGAGGAAATTATAAAAACATATATCAATTATACTGAAGGACTTGATTTAGAGGCTGTCTGTATATAGATGCATTTCACCTTAGGAAGTACACATGCACATCAAAACACTTCAACTGAATATAGATGCCATTACATTATTTAGTTACGTTACAAAGCAAACGGCAGGTTCATAAACGTTGTTCTATTATGTAT +>mm8 +-AAAAGAAACATTAAGCTTTATT-------CAAAGAAATACTGAAAATAAA--TGTTTTACAAATTGCAATCAAGC----AAAGTGATTTAGTAATG---------AATTCTCAGA-------------ATCTATATAATAC-ATTCTGGTGTTGGCCAATGAAAAGTTTACTTTAAACTAGTATTTTACATATGCTTAACCTTCAATCA-ACTTAACATTCATTGATAATGATTTAAC------------TGTTC----TGTAGTACTCAGAAATAACTTCT--AAATACAAACCATTCACATCAGCAAGGAAACTGTAAAGACGCACGTAAAT--GACTGCAGGCCTCCATCTGCAGGCTGTACGCAGATGGGTCCGTTTCTCCTTAGAAAGTTCCCA----CACAGTCAAACCTCAACAA---AGAGACGCC-TCTCGCTCTACTTTTCTGTCACGCAGCCACCTGCAGGTTCCTAGGTGTCACTCTATTATGCAT + +>hg18.chr10(+):126075869-126076368 +AAATATAAGCTTTATTTTAAATTTAAAGAAGTATTGAAAATAAACATTTTTTACAAATTATAATCAAGCACTCAAAACAATTTAGGAATGTTAAACACTAATTCTTAATTCAAAATAATGACATCCATAGAATACAACCCTGGTGTTGGCCAATATGAAGTTTACTTAATATTAGTATTTTATATACACTTAACCATTAATCCTTCCTAAAATTCAATAACAATGATTTCACTTTATAAGATGAAGCCTTTTATGCAATACCCAGAGATAACTTTTTCAAATATGAAACACTTATACCAGTGAGGAAATTATAAAAACATATATCAATTATACTGAAGGACTTGATTTAGAGGCTGTCTGTATATAGATGCATTTCACCTTAGGAAGTACACATGCACATCAAAACACTTCAACTGAATATAGATGCCATTACATTATTTAGTTACGTTACAAAGCAAACGGCAGGTTCATAAACGTTGTTCTATTATGTATCAACTGA +>mm8 +AACATTAAGCTTTATT-------CAAAGAAATACTGAAAATAAA--TGTTTTACAAATTGCAATCAAGC----AAAGTGATTTAGTAATG---------AATTCTCAGA-------------ATCTATATAATAC-ATTCTGGTGTTGGCCAATGAAAAGTTTACTTTAAACTAGTATTTTACATATGCTTAACCTTCAATCA-ACTTAACATTCATTGATAATGATTTAAC------------TGTTC----TGTAGTACTCAGAAATAACTTCT--AAATACAAACCATTCACATCAGCAAGGAAACTGTAAAGACGCACGTAAAT--GACTGCAGGCCTCCATCTGCAGGCTGTACGCAGATGGGTCCGTTTCTCCTTAGAAAGTTCCCA----CACAGTCAAACCTCAACAA---AGAGACGCC-TCTCGCTCTACTTTTCTGTCACGCAGCCACCTGCAGGTTCCTAGGTGTCACTCTATTATGCATCAACTGA + +>hg18.chr10(+):123223889-123224388 +AATTTATAAATCTGTAAGTGTCCTCTGTCCCTTTCAAAGAACCTCATGCTATGGATTTTAACTAGTAAGAGACACCAGCAAGCGTCAGTTAAGTGTCCTCTGTCCCTTTCAAAGCACCTCATGCTATGGATTTTAACTAGTAAGAGACACCAGCAAGCATCAGTTAAGTGTCCTCAAAAGAGAATTAgaggctgggagcagtggaatggcttgaacccaggaggcggaagttgcagtgagcctagatcatgccattgcactccagcctAAAAAAGAATTAGAAGAGGAAAAGAAACCTAAAAGGAGTGCAGCCCAAAAGGAGGCAGTGTTCTGAGCTGCAGAAGGAAAAAATCACCTACCCATATGTGCACGGTAAGCTGAATTCAGTCACTGAACAGCTTCATGTGCTGAGGTATCCCTTTGTAAATTGTATTTCAAAGGTCCGGAGCGGATGGTTCCCCAGTGCCGGACATTGAATGCCCTCCCATCCACTGACTTC +>mm8 +-----------------------------------------------------------------------------------------------------------TTCCAAGTCCATCATGCTATAGAGTTTGACTTACAACTGATACAGGCAAAATTCACTCAAGTACTCCCA--------------------------------------------------------------------------------------------ACAAAGGAACTGCAAGAGGACCAAGAACCTGAATAGA---CAACCCAGGAGGACACAGGGTTCTTTG-TGGAGAAG--CAAAGTCACTTGTCCACATATATATTTTAAACTAAACTTTATCTCTGAACTACTCCGTGGCCTAAGGCTCCACTTAGGTAA---TATT----TGGC-----------ACTGTCTGTATG-------TCCACTG----TCTGTACTGTGCCTCT + +>hg18.chr10(+):123227846-123228345 +AGTTGCGTGACATTTATTTTGTCTTGTTAACATTAATATCTGTAGAAACATTTTTATTGTCAGTATAAAAATTAACAGGTTTTATTAAATACTTTCTCCAATTTTGTAACACATAAGATCAGTGTAATCTGCATTCATCTTGCACGGCTATTGCAAAGTGAGTGGGTGTTTCCAAAGCAAAACACAATACTTTAGTACAGAAGGAACAACGGCGATATTTTGTCTGATGTAGGTATGAGGCTGGATCTTTTGGTGAGGTCCTGCCAGAATTAGATGAAAGCAATCCCTTAAAAAGATGGACGTATCCCCAAAACTATCAGCAGAACAACTCTGTGTTTCAATTTTCTATGATGGGACTTGAAGATCCTAACAGGCGTCTCCAACGCCAAAGAGTCTGGAAGCCATTATCAAAATTCACTGAAGAGAATACAGGCTAATCTGATTAATGTGCAACTCAGAAGCAGAAGGCCAGCTGCCAGAGAGAAGCACATTCTGCTAT +>mm8 +AGCTGCGTGACATTTATTTTGTCTTGTTAACATTAATATCTGTAGAAACATTTTTATTGTCAGTATAAAAATTAACAGGTTTTATTAAATACTTTCTCCAATTCCAAAACACATAAAATCAGTGTAATCTGCATACATGTCGCATGACTGTAGCAAAGTGAGTGGGCGTATCCAAAGCAAA--ACAATACTTGAATACGAAATCAACAAAAGCGTTATCTTGTCGGATGTAGCTATTAGGCCAGATCTTTTGGTGAGGTCTTGTCAGAAGTAGCCAGAAGCAAACCCTTAAGAAGATGGAAGGAGGTCCCAGACTCTCAACCGAATGATGCTGTTTTGCCATCCTTCGAGAGGA----TGGAGATTCCCCAAAGGGCTCTTGGTGCTGAAGAATCT-GAAGCTGTTATTAAAACTCACTGAGA---AGCAAGGCAAACGTGATGAATGTGTAACCC--GGGCAGAAGGCCAGCTGCCGGACG-AGA-GGACCCTGCTAT + +>hg18.chr10(+):123229123-123229622 +GTTACATGGTGGCTTGTGGCAGTCCACTGCTCCAGAAACCTTCTTCTCCTCCTGGGGAAGATTACAAGTTTTCAACTGTATAAATCTTTACACATATGCTGATTACTTTTCCAATTATTTACTCCTCTGATCCATATATACAAGTGGAGACAACAAGCTCTGGGAGGCATGGTCTCCCTGCTCAGTGTAGCTAGGTTCCCAGTGCTGTCCTGTTTGGGGACAGGCAGACACAGTCATTCATGTTTTAACACTGCCGTTTATGTGTGGATACTGAGGAAGGCATGGTTCGTAAGGCATGGGGTCTGGAGAAAAAACAGAATCATCTCCTGAAGAACAAGAACTTCTTGTGTCAGGGTAACTAGGTGAATACTGTTCGAGAGGTTGGCTGAGGTCCAAGTATTCCTGAAAGAAGGGAAGAGAGACGTTTTATTTCATCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGAA +>mm8 +GTGGCATGGTGGCTTGCGGCTGTCCACTTATCAGGAAACAGTCTTCCTTTCCTGGTTAGG-TAACATGTTTCCAACTGTATAAATCTTTACACACGTGACAAATATGCTTCCCACTATTTACTCCTCTGATCCATATATACAAGTGGAGGCGACAGGCTCT-GGAGGCACAGCCTCTCTGCTCAGTGTAAGTAGGTTCCTGGTGCTGTCCTGTTTGGGGACAGGAAGACACATTCACTCATGTTTTAACACTGCCGTTTATGTGTGGATACTGAGGCAGACAGGGTTCATAAGGCATGGGGTCTGGAGAAAACACAGAATCGTCCCCTGAAGAACAAGAGCTCCTTGTGTCGGGGTAACTAGGAGAATACTGTTCGAGAGGCTGGGTGAGATCCAAGTATTCCTGCAAGAAGGGAAGAGAGACGTTTTATTTCACCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGCA + +>hg18.chr10(+):123229361-123229860 +CATGTTTTAACACTGCCGTTTATGTGTGGATACTGAGGAAGGCATGGTTCGTAAGGCATGGGGTCTGGAGAAAAAACAGAATCATCTCCTGAAGAACAAGAACTTCTTGTGTCAGGGTAACTAGGTGAATACTGTTCGAGAGGTTGGCTGAGGTCCAAGTATTCCTGAAAGAAGGGAAGAGAGACGTTTTATTTCATCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGAAAGAAGGGAAGAGAAGAGTTTTATTTCAAACACAAACTCTTGAGATGTGGGTATTGGACGTGGGACAGGACAGGAGACCCCTAGAAGGTGAACAGAGACCCAGCCCACCTGACTTCCACGAAGACCTCCCTGAGACCACGTCTGATGTACCCCAGGCTGTCCTTAGCTTTTCTCTTGGAATCCATCATAAATCAACTATTGACAGGTAGAGAACAATAAAACCTAGTTGAGCTATAGGT +>mm8 +CATGTTTTAACACTGCCGTTTATGTGTGGATACTGAGGCAGACAGGGTTCATAAGGCATGGGGTCTGGAGAAAACACAGAATCGTCCCCTGAAGAACAAGAGCTCCTTGTGTCGGGGTAACTAGGAGAATACTGTTCGAGAGGCTGGGTGAGATCCAAGTATTCCTGCAAGAAGGGAAGAGAGACGTTTTATTTCACCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGCAAGAAGGGAAGAGAAGAATCTCATTTTAAACAGAAGCTCCTGAAAAATCTCTATCAGATTTGGGAAGGGACGGGGAACCCCCGGAAGCTTTCCAGAGGCCTAGCTCACCCCAGTG-TACAAAGACCTCCCTGATACCCCACTCCATTCACTCCAGGCTACCCTGAACTTTTCTCTTACGACACAGCATCTATAAACCACCAGCAGGCAGCAGACCATAAAACATAG-TGAACTGCTGGT + +>hg18.chr10(+):123229555-123230054 +CATCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGAAAGAAGGGAAGAGAAGAGTTTTATTTCAAACACAAACTCTTGAGATGTGGGTATTGGACGTGGGACAGGACAGGAGACCCCTAGAAGGTGAACAGAGACCCAGCCCACCTGACTTCCACGAAGACCTCCCTGAGACCACGTCTGATGTACCCCAGGCTGTCCTTAGCTTTTCTCTTGGAATCCATCATAAATCAACTATTGACAGGTAGAGAACAATAAAACCTAGTTGAGCTATAGGTGCTGGGCAGGCAACTCGGCTTCACACGGACCTAAATAACCCGCTGAGTCTACACCACCTCCTCACTAGAGCCCTTGCTTCAAATGCGAGCCCCAGCAAAATGAAAACCGGTAACATGTTGTGGGTCCCCAGACCCCCTTTAAGTAGTTGAGACTATGAATATTTATTTTCTGAATTACATTTTACTATTGTAGT +>mm8 +CACCTTGGGTCAGGATAACAAGGTGAATACGGTTCGAGAGGCTGACTGAGGTCCAAGTATTCCTGCAAGAAGGGAAGAGAAGAATCTCATTTTAAACAGAAGCTCCTGAAAAATCTCTATCAGATTTGGGAAGGGACGGGGAACCCCCGGAAGCTTTCCAGAGGCCTAGCTCACCCCAGTG-TACAAAGACCTCCCTGATACCCCACTCCATTCACTCCAGGCTACCCTGAACTTTTCTCTTACGACACAGCATCTATAAACCACCAGCAGGCAGCAGACCATAAAACATAG-TGAACTGCTGGTAGCAGGTTGCCCACTCTGCTACA---GGACCTCGGTGACCCACTATAT--ACAGC-CCTCTTCACTACGGCTCACAATCGGAGTTTAAGACCCAGTGAAGT--AAACCCAG-----------------CAGGA-CCCTTTACAAAGCCAGGAC-ATGAATATGTATTTTCGGAATCACATTCTACAGTTGTCAT + +>hg18.chr10(+):123231339-123231838 +ttttattttttttttttttgagacggagtctcgctctgtcgccaaggctggaatgcaatggcatgatctcggctcactgcaacctccgcctccccggttcaagtgactctcctgcctcagcctcccggagtagctgggattacaggtgcacaccaacacgcccggctaattttttgtatctttagtagagacagggtttcaccatgttggccaggctggtctggaactcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgcctgaccAACTTTTCCCAGTTTCTCAATGAAGCCATAAACTTTCAGATCTGATAGGAAAAAAACAGGGATATCAGTAGATTCCAAGTCTACAGTTAAAGGAACTTATACTAGAAACAACAATTTTGGCAGAAGAAGAAAGTTGGTTTCTTCCCCCCCTTGAACCGTTCCTTTCCTTTCAACTTCTGAAGGTCAGCTGTATTCATT +>mm8 +---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTTTCTAAATGAAGCTGT-AACCTTCAGATCTGACTGGGGGT--GGGGGGCTATCACTGGATTCCAAGCCTAGGGTTAAAGGAACTTAGGCTAGAAACAACAGTTTTGGCAGGAGAAGAAAGTTGGCTTTTTTTCCCCCTTGAACTATTCCTTTCCTTTCAACTTCTGAAGGTCAGCTGTGTTCATT + +>hg18.chr10(+):123231360-123231859 +gacggagtctcgctctgtcgccaaggctggaatgcaatggcatgatctcggctcactgcaacctccgcctccccggttcaagtgactctcctgcctcagcctcccggagtagctgggattacaggtgcacaccaacacgcccggctaattttttgtatctttagtagagacagggtttcaccatgttggccaggctggtctggaactcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcatgagccactgcgcctgaccAACTTTTCCCAGTTTCTCAATGAAGCCATAAACTTTCAGATCTGATAGGAAAAAAACAGGGATATCAGTAGATTCCAAGTCTACAGTTAAAGGAACTTATACTAGAAACAACAATTTTGGCAGAAGAAGAAAGTTGGTTTCTTCCCCCCCTTGAACCGTTCCTTTCCTTTCAACTTCTGAAGGTCAGCTGTATTCATTTAAGTGCAATCTCTTCCTTTA +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTTTCTAAATGAAGCTGT-AACCTTCAGATCTGACTGGGGGT--GGGGGGCTATCACTGGATTCCAAGCCTAGGGTTAAAGGAACTTAGGCTAGAAACAACAGTTTTGGCAGGAGAAGAAAGTTGGCTTTTTTTCCCCCTTGAACTATTCCTTTCCTTTCAACTTCTGAAGGTCAGCTGTGTTCATTTAAATGCAAGCTCTCCCTTTA + +>hg18.chr10(+):123287470-123287969 +GTCTTCAATGTTTAATTAAAATGGCCTACTTATCTGTGCACTCTGACAAAAATGTATTTATAAGCTCATATACATGGTTCCCTTTGCACAGAGGAAATAGATGCCAGGAACAGACACTGAATTGGTACCGTCTAATGACTTTCTTGTGATGGAAGTGAAGGGCCCTCAACATTCACCTTTTTCCAGCCAGCCACAGGCTCAGTCCTCAGACCTTTTCCTTTACTCTTCAGCTGGCCTTCTACAGTTGCCCTGTTGGGGAAATGATGCTTCTCTTTTAAAACCAAAGGTCTGCTACAGCACATCTGTACCCTTTTCACCTGCCCAATTAACATTTTCAGAGTAATCTCAGCTTCCAAAATGTCAGACATTTCATACCACGTCCACTTTACACAGATGACGCTTGGGAACCATGAGGATCATGCAAAGCTCATAAACCCTGGCTGCCTGGAAAACAGAATATTGTCAGATGACAGAAGCAGCCTTGTAAAATGATAGTAGA +>mm8 +ACCTTAAATGGGAAATGAAAATGATCCGCTTATGGGTGCACTGTGACAAAAACCTATTTGTGAGCTCAAACATGTGGTTCCTTTGGCTCAGA-GAAATGTCTTCCAGGAATAAGCATTGAGCTAATTTCTGACATTGACTTTTTTC----------------------------------TTCCAGCCAGACAGGGACTCAGTCATTAAAT-----CTGTTTCTTTACTCTTTGTATGATA-AGTTGCCCTTCTTTAACCTTGTTGCCTCTCTTTTAAAAACAA-----------------------------CCCTTGCACGTACCAAGAATTTCAACATAATCTTAACTTCCAAAA--TGAAATGTTTTATACCACATCTACCTGATAAAAATAATGCTTAGGGGCCAAGAAGACTCCCCCAAGCCCATAAAACCTGGCTACCCAGGAAACAGAACACAGTCATACGACAGACGAGACCTTCTCAGATGACATTGGA + +>hg18.chr1(+):92746841-92747340 +TCTTATAAAATGGAAAACTTTAATTGTTTAAAGAAAAGGCACAAGTAAACATTTCAGGTTATCATACAATGTTACAATAAAAAATTCCAATAGCAAAATGAAACACATTATAACTTTGCTTCTTGGTAGTATACTGAATGTATTATTCTATCATCTCCTCTTTGGAGTAAAAAGAAGGGATAGGCAGATCAATGGATGTGATGTAAAAACTTGGATCATAAATAGCATCCACTATACCTTTAACCAGAAATTAAACTTCAGTAGaattaaaattaatttttaaaaCTTAGTTTTGTTAATAATAGAGCAGCAGTAACTTTCAAGCTAAAACTCATTGTTTTGGTAAGTAAATAACTGATTTCATGAAATGTTCGCTGTCAATGTCTGGTATGTTAATATACATTAATCAAGCTGGTCATGAAACAGTTTTACCAAAATATAATTCATATACTTATTTTACTTTAAACCTGAATATTACAGTACATTATATAAAAGATAA +>mm8 +TCTTGTAAAATGAGAAACTTTAATTATTTAAAGCAAAGGCACAAGTAGACATTTTAGGTT---ATACAGTGTTACAATAAGAAAACCCCGCAGGACAATGAAATACGTTGTAACTTTGCATGTCC-----------AATGGATTACCATGTCAGCTCTTCTCTGGAGGGAAGGGG-----TATGTAGACCCACAGATGT------AAAAGTTGGATGTTAAATAGCATCTACCCTATTGCCAATAAGaaatttaatt--aatagaattaataagaaattttaaaaattGTT--TGCTAAT-CTAGAGCAGCAATAACTTTCAAGCTAAAACTCATTACTTTAGTAAGTAAGTTACGGATTCTAC-AAATGTTGGCCATCGATGTCT----TGGTATTGTGCAATATCCATGCTGGCCATGAA--AAGCTTACCAAAACATAATTGATATCCTTAACT---TTTAAAACTGAATATTACAGTGCATTATGCAA------A + +>hg18.chr1(+):92860438-92860937 +tacgcattaaaaaatattattttaagaaggggtccacaggttccagactgccaacagtgttgatagcagacacaaacacaaaaacggtaagaacctttgTACTTAagaaactcttgaagatatacacaaggaaacataagcaagaatgttcagagtagcactgtttgcaagagcaaaaaggagagtggatcaataaattgaggtatagtcactgacagacttttctaaaagtccttaaaatgacagaactggagttacatgtataaacatggacaaatttcTTAATCTAAATACATGGGTGTTTGATACAATAATCTTTAGATTACTACACACCACCACCATTACCCTATACtatttttatttatttatttttCATTTATCAATGTAAAAATTTCATGGATTACCACCAGTCCAAATACTGGCATTTAGGAACCAGTGCCTATTACCATCCTGCTTCCAGCAAAATCCATCCAAAATCACACTTATTAGTCAGCAATGG +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr3(+):151165384-151165883 +GTTGGAATAAATTTATTTCATCTGTCTGTAAACAAGGTGTTTAATAGTTATGGCATTTTTTTAAATGCATATTAAATCAGATGAGTTAGACTGTATCCCAGATGTAACAAAGTGCAGGGAAAGAAATGGACAAATCAGCAACAAGATTTGTTTTTAAATCTGTACATTATCCACAAGGCCCAAACAATAGAAGCAAATACTAGAATGTCCCTAAAGTAGTGCCATTCGAAAGAAACCCTTAATAGGTCAGTTAAAATCCATCTCACAATAGCAACAGTTCATTTTAACAATAGTATGGCACAGAATACATATGAAAAAAATTCATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACTCAAGCTGCAAATAAAAATTGGTCCTATGAAGAACAAACTGGACACACTCCAGATGGTTATGTTGGGATACCTAATGTCCATAATGGCAGCCTTTTACAATTTTACTAAAGAGTAGAGCTGGTGTGCAAA +>mm8 +GTTGGAATAAATTTATTTCATCTGTCTGTAAACAAGGTGTTTAATAGTTATGGCATTTTTTTAAATGCATATTAAGTCAGATGAGTTAGACTGTATCCCAGATGTAACAAAGTGCAGGGAAAGAAATGGACAAATCAGCAACAAGATTTGTTTTTAAATCTGTACATTATCCACAATGCCCAAACAATAGAAGC-AATACTAGAATGTCCCTAAGGTAGTGCCATTCGAAAG--------------------GAAATCCATCTCACAATAGCAACAGTTCATTTTAACAATAGTATGGCACAGGATACATATGAAAAAAATACATCACAAGACAGCCAAGTCCACAATAATGCAACTTCATATAAAAACCTAAGCTGCAAATAAAAATTGGTCCTATGAAAAATAAACTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCC-TTTACA--TTTTCTCAAGAGCACAGCTGGTGTGC-AA + +>hg18.chr16(+):56546748-56547247 +CAGAGACCTCCAGCTCCCATCACCCCTGAAACAAAGGAGAAGACAGGGTGGGTGGCTGGGTGGACAGGCGgagggaatgagtgagtgagtgagtgagtggatgagtgaatgaatgGGGAAGGTAAGGGACACATATCCCCCAGCCTCTCAGAGTCTCCCCATGACATGGGACGtgagtggaatggtgtctcccaaaaagataattgcaagtcctaaccccattacttgtgaatgtgaccttatttggaaatagcttctttgcaggtgtgattaagttaaggatctcaaagtgagatcatcccggattgagggtgggccctaaatccagtgactgatgtcctttttaaagaacggagagggaggcttgacacacacagacacagaggtaaaggctgtgtagagacggaggcgggcactggaggacagccagaagccaaggtttgccaaggaccgcaagtggccaccaggagcaaggagagcagcatgggcatgtctcgct +>mm8 +CAGAGGCCTCCAGCTGCTGTCGCCCCTGAAACAAAGGAGGTGACAGAGTAGGAGGATGGATGGATAGACAGATGGAAtggatggatgagtggatgagtggatgagtggatggatgggAGAGGAAGTGAACATGTAT-CCCCAGACCCTC--AGTCACCCCAT-------GTAGCGGATTAAAAAGTGTC-CCTGAAAAGACATGCCTAGGTCCT-ATTCTATCCTATATAAATGTGACTTTATTTGAAAATACAGTCTTTGAGAATATTATTGTCCTCAGAATCTCAAAGCAAAAGACTTCTGAATTTAGGGCAGGCCTTCCCCC-AGTGACAGTCA----------------------------------AG---GACACAGGGAGTAA------------------------ATAGAAGGACAGCTGGAAGCCAAGGAGGCTCAAG------------------GGAATCAGGAGAGCGGCAAGGACATTCCACACC + +>hg18.chr16(+):56475004-56475503 +tttgagatgaggtctcgctatgttgcccagtctgctctccaactcttggcctccagtgatcctcctgcttcggcttcccaaagcactgggattataggcatgagccaccatgcccggcAGTGAAGTATTTTCTATCCTTGAAATGTGTTAGACAAATTCCTGAGGGGAAACCCCACACATTCAATAACACTTTACTTTTTCAGCAAAGCTTCCCATGTATTGGAGCCTCATTTTATCCCTCACCCATGAACTTTAAAAGTGGAAAATCATTTTGTTCTTAAAAAGAGGAACAGTCAGGAAAAGGTAGGGCTCTCAAATGATAGTGAGAGCTCAGGGACTCGAACACTTGATGCAACTTGTCGAGCTCAGGCCCAGCCCCGCGAGGAGCTGAGTCGGGGCTGGCGTGCTGGCGGGACGGTCAGAGCTGCAGCCACTGAGGTCACGACTACGGAAAAGCATCTTCTCTTGAGCCGTGGGGGAAGGTGGGGCGCTGGGGCGC +>mm8 +---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGGACCCTACCAAGTCATCAACCCTTGATTTGTCTAGTAGAGTTCTCCTTGTGTTGGAGCCCTCTTCTAGTCTCTCCTCAAATCTTTGAGAAGTACAAGGCGGTTTTCTTCTTGAAAATAGCAACCTCAGGAAGGGAGCAGGGTGCTCAGGGAATGGCAGGAGCTCGAGGGCACTACCACCTGGTGAAATTTG---AGCGTTTCTACAAGCCTGTGAGAAGGCGCCCTTAGGCTGGGACGCT-----------------------------------------------------------------TGGCGAG---------GCGGGGGTTC + +>hg18.chr8(+):145589254-145589753 +CAAGCAAAAAATGTTTTTCCTTGTGTTTTGTACAAAAAGGGGGTGGGAGGTAGTTCCGTGTGCTGGTGGTGACGGCATCCACGGGGCTAGAAGTGGGCGGTGACGCGGTCCGTCTCCAGCAAGTCGTCCAGGATCTGCAGGGGATGGAAgggtgggtgggtgggtgggtgggGATGCACACGGAggggcggggcgcgcggggggcggggcgcgcACTCACTATGTCTGGTGTGGTGCCGATCTTCTTGGCTAGCTCGCTGCGCTCCATGGTGCTCAGGTACAGGTAGCGGTTGAGCAGCTCCCCATCCAGCACGTTGCGCACGGCATTCTGGAGGGTGCGGCGGTCCACGTGCAGCATCCTGGGGCGTACAGGCACAGGTGTCAGGGCAGGCTGGGGTGGAGGGGGTGCTGCACGCGGGCGGGGCCGGGGCTCACCGGAAGGCGCGGGGGTTGAGGCCGGCGTGGTGTGGCAGCATGGTGGTCAGCGCGTTCTGCAGCA +>mm8 +GAA---AGAAATCGTTTTCTTTGTGTTTTATACAAAATGGTAGAGGGAAGT------GTACAACACCAGA-GCAGCATCC-TAGAGTTAGAAGTGAGCCGTGACCCGGTCTGTCTCCAGCAAGTCATCCAGGATCTGTGGGTGATGGA----GAGGTAAAGGTGTAGACAGGAA---GGGTGGTGAGGGCGA--GGCCGAGGGCGAGGGCGT-TACTCACAATGTCAGGCGTGGTACCTATCTTCTTGGCCAGCTCACTGCGCTCCATGGTGCTGAGGTATAGGTAGCGGTTTAGCAGTTCCCCATCAAGGACGTTGCGCACAGCATTCTGCAAGATGCGCCGGTCTACGTGCAACATTCTGGGGTG-GTAGACATAAAGGTCAGGGCAATGTGGAGTACAGGGTGAGAC---CGGGGAAGGGGC--GCACTCACCGGAAGGCGCGGGGGTTGAGGCCAGCGTGGTGGGGTAGCATGGTCGTCAGTGCATTCTGCAGCA + +>hg18.chr1(+):159899157-159899656 +TGGTAGGTGGCCTGGAGTCCCCATGCTCAATTTCAAGAAGCATCCAGATTCCAGGGCCTGGGTCTCCAAATGGAAGTAGAAGTACTAGAAGATTGCTGGTGCACGCTGTCCTGCATCACCCTTTCTCAGGAGGATAGAGACTGAAACAGGAGGTTCTGAGCTGAGTTTTGGTGACCATTTCCCTCTTTCTCCCAGAGGCCCAGGCCAGCTGTGGCCTCAGAGGAAGAAGAAGGGAGTTGTTTCCCTAGTTTCTAAAATTTCTGTGAATTTGAACATGGGCTACACCAGATTTATTCTGGGAAGCTCTGAATCTTCTAGGAGGGAAAGACTGAGAGGAAAGAGGGTGGAAAGGGAGGAGCCTGTGATAAAACAGAACATTTCTTTTTCACTTCCCCTTTCAGACTCCAGAATTTGTTTGCCCTCTAGGGTAGAATCCGCCAAGCTTTGAGAGAAGGCTGTGACTGCTGTGCTCTGGGCGCCAGCTCGCTCCAGGGAGTGA +>mm8 +TGGTAAGTGGTTGTGGGTACCTTTATTCAGTTTCTGGAGGAGTCCAGATCCCACAGACTGGACCTTC---------------------AAGACTCTTG-------CCATCCTCCAT------------------CACAGACTGAGGCAAATGACTCTGAGCTGCGTTGGGGTGAAGTTTTCCCTCTCTGTACCAGACGTCCAGGTCAGCTACGGCTCCAGCAGAACATGAAGGGAGTTGTTTCTC-AGTGTCTAAA--------AAATTGTGATTTGAGCTGAATCCAGTTTATTCTGGTAAGTCCTGAGTCTTCTAATAGAGAACGGATGAAAGGAAAGAGGGTGGAAGGGGAGGAGCCCAGGATTAAACAGACCGTTTC-TTTTCACTTCCCCATTTGGACTTCACAATTTGTCTGTTCTC-TGGGTACTATCTGCCAAGCCGGGAGGGAAGCCTGTGCCTGCAG-----------CTGACTCGCTCCAG-AGCTGA + +>hg18.chr1(+):159899076-159899575 +GCCATCCTGACATACCTCCTTGTCCTTGTTCCACAACTCAGCAGTGAGTCTGGGATTATGACAATAGAGAAAATTAAATGATGGTAGGTGGCCTGGAGTCCCCATGCTCAATTTCAAGAAGCATCCAGATTCCAGGGCCTGGGTCTCCAAATGGAAGTAGAAGTACTAGAAGATTGCTGGTGCACGCTGTCCTGCATCACCCTTTCTCAGGAGGATAGAGACTGAAACAGGAGGTTCTGAGCTGAGTTTTGGTGACCATTTCCCTCTTTCTCCCAGAGGCCCAGGCCAGCTGTGGCCTCAGAGGAAGAAGAAGGGAGTTGTTTCCCTAGTTTCTAAAATTTCTGTGAATTTGAACATGGGCTACACCAGATTTATTCTGGGAAGCTCTGAATCTTCTAGGAGGGAAAGACTGAGAGGAAAGAGGGTGGAAAGGGAGGAGCCTGTGATAAAACAGAACATTTCTTTTTCACTTCCCCTTTCAGACTCCAGAATTTGTTTG +>mm8 +GCTGTTCTCACATATGGCCTAGCTTTTGGTCTACAATCCAACAGTGAGCTGGGGATTGTGATAACAGAGAAACCCAGATGGTGGTAAGTGGTTGTGGGTACCTTTATTCAGTTTCTGGAGGAGTCCAGATCCCACAGACTGGACCTTC---------------------AAGACTCTTG-------CCATCCTCCAT------------------CACAGACTGAGGCAAATGACTCTGAGCTGCGTTGGGGTGAAGTTTTCCCTCTCTGTACCAGACGTCCAGGTCAGCTACGGCTCCAGCAGAACATGAAGGGAGTTGTTTCTC-AGTGTCTAAA--------AAATTGTGATTTGAGCTGAATCCAGTTTATTCTGGTAAGTCCTGAGTCTTCTAATAGAGAACGGATGAAAGGAAAGAGGGTGGAAGGGGAGGAGCCCAGGATTAAACAGACCGTTTC-TTTTCACTTCCCCATTTGGACTTCACAATTTGTCTG + +>hg18.chr4(+):5763326-5763825 +CGTCTCAGTGGGGTCTGGGTGTAAGGATCCCTTTACCCATCCTCCTAGTGGAGACTGAGTGTAACGGTGTCTCCACCCATTGTCTCGACCTTCCCTGGGACAAAATAAGATTAAAACAGGAGTCTTCGCGTGAGCAAGTTCAGAGGCGTGGAGGGCGGTGTGTTCCCGGGAAGGTTGATGGGTAGAGGTTAGGGGCAAGGGCAGGGGGTTGGAATTGCATtgatcccagcgtcttcatcaggaggatgggcggagcacccaccgcagagggttattgagaaagttaatgagatcattaagctaaatgcgtagcatattctaagcctcaaaaaaCTTAAAGGAGCCTTCTAAGCCTCAGTAAAGTTAAAGGGGTGGAAACCGGGCCCCCCTCCGGAAGGGTCCGGGGCTGGGAGGCGCGTCTGTCTCTGGGCATGCTCAGTGCAGGGGCAGGGCTGGGGCGGGGGTGGCTGAAAGTTTTGAGCGGTGATCCAGGCTCCTC +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCCTCGGGCTGAAAGGCGCGCCCCG-GCTGCGCATGCTCAGTGCA-CTGTAGGGATGGCCCGGAAA-GGCTGAAAGTTTGGGGCGGCGGTCCAAGCTCCTC + +>hg18.chr2(+):70753968-70754467 +GAAGAGAACCAGCCAGGAGCTTTGTGTCGTGAGCACAGAGCACATCAACGGGTAAGAGGTGGACCCACAACCACCAACTCCCCTTATTTTATTTTTTGCTGACTCCCCTTAAAAACACCCATGATTTCTTTGCATGTAACTATTGTTTAATTCATCAAATTTACATTTTCTGTCCAAACAATCCCTAGGGATAAAAAGTGCCATGTTCCTCTATTTGCTTTTCAATTGGCACATTAGAGCTCCAAGCAAGCCAGCAAGGGttttttggtttttgctgttgttgtttgagatgaagtctccctctgtcacccaggctggagtgcagtggtgtgacctcagctcactgtaacctccgccttctgggttcaagcaattctcctgccacagcctcctgagtatctgagatttttggcgtgtaccaccatgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggccagactggtctcgaactgctgac +>mm8 +---------TGGACAAGAC-CTGGTGCTGCAA--------CACAAGCACAGAT-GGAGGCAGAGTCCCCACC-------------------------GCTGGCTCTCCAGAGGGTCACCTGGGGCTTGTTCTCAGGGGATTACCAGTTAACTCAGCTAGCTTACAACTTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr2(+):70744123-70744622 +TCTTTTTCTTCTTTGAGGGAGACTTGGAAGGTGAGCCCTCTGGGGACATGGGGCCGCTGGTGACCGACTCGGTTTTGTCCTTAGAGGTATCAACATCCGTGTCAGCACTGGTGGTCATCTGGCTCAGGCCTTTGCTGAGGATTTCCTCTGCCGTCTGCTCCTCCTCCCTCCCGTTGACCACCACCCCTTCCGGCTGGGTTGTTTCGGGCTCTGTGGTGGCGGCTTTGCTTGTTTCTGTCTTCTTAGTACCTTCTAGAAAAAGATCAAAAGATATGACCTGTAAGATTTCATTCAGGTGACAGCTTCCACCTGGGGCTAACAGAACCATTTCTAGGGAATTCTATAAAATCAATCCAGAGCGAGGGGAGGGCCAGCCTGATGTTGAGGGATGGCTACCAGAGACAGATGGAAGGACTGGGTTCTGATCTGCACCTTCCATGTGGCCTGTCCTGGGAACACCCCCTTGCAGGCTGGCAGCTCTGGGCTCTTGTCTATGAAT +>mm8 +TCTTTTTCTTTTTGGAGGGTGACTTAGAGGGCGAGCCCTCTGGGGACAAGGGGCCACTGGTAACTGACTCGGTTTTGTCCTTGTAGCTGTCGCCATCAGTGTCAGCGTTGGTGGTCATCTGGCCCAGTCCTTTGCTGAGGGCCTCTTCTACGCTCGGCTCCTCCTCCTTCCCATTCACCACCAGCCCTTCTGGTTTCACTGGCTCAGGCTCTGTGTT---GGCTTCGCTGACTTCTGTCTTCTTGGTA---TCTAGGAAAAGACCAGAAGACCCAACCTGTAAGATTTCATGAAGGCG--AGTGT----------TCAACAGAACCACTTCTAGGGAGGTCTGGAG-------CCAGG--GAAGTGCAGGCTGGCATGGGGTGGGAGAAGGATCCTGGAACAGAGGAGGGGTGGCGT---------TCTCACCTCTCACTA--CCTGCCTGGGGAACACCCATTGCGCAGGTGGTAACTCTGGGTCCTTGTCTACATTT + +>hg18.chr2(+):70744138-70744637 +AGGGAGACTTGGAAGGTGAGCCCTCTGGGGACATGGGGCCGCTGGTGACCGACTCGGTTTTGTCCTTAGAGGTATCAACATCCGTGTCAGCACTGGTGGTCATCTGGCTCAGGCCTTTGCTGAGGATTTCCTCTGCCGTCTGCTCCTCCTCCCTCCCGTTGACCACCACCCCTTCCGGCTGGGTTGTTTCGGGCTCTGTGGTGGCGGCTTTGCTTGTTTCTGTCTTCTTAGTACCTTCTAGAAAAAGATCAAAAGATATGACCTGTAAGATTTCATTCAGGTGACAGCTTCCACCTGGGGCTAACAGAACCATTTCTAGGGAATTCTATAAAATCAATCCAGAGCGAGGGGAGGGCCAGCCTGATGTTGAGGGATGGCTACCAGAGACAGATGGAAGGACTGGGTTCTGATCTGCACCTTCCATGTGGCCTGTCCTGGGAACACCCCCTTGCAGGCTGGCAGCTCTGGGCTCTTGTCTATGAATTTAGATGGATATTAA +>mm8 +AGGGTGACTTAGAGGGCGAGCCCTCTGGGGACAAGGGGCCACTGGTAACTGACTCGGTTTTGTCCTTGTAGCTGTCGCCATCAGTGTCAGCGTTGGTGGTCATCTGGCCCAGTCCTTTGCTGAGGGCCTCTTCTACGCTCGGCTCCTCCTCCTTCCCATTCACCACCAGCCCTTCTGGTTTCACTGGCTCAGGCTCTGTGTT---GGCTTCGCTGACTTCTGTCTTCTTGGTA---TCTAGGAAAAGACCAGAAGACCCAACCTGTAAGATTTCATGAAGGCG--AGTGT----------TCAACAGAACCACTTCTAGGGAGGTCTGGAG-------CCAGG--GAAGTGCAGGCTGGCATGGGGTGGGAGAAGGATCCTGGAACAGAGGAGGGGTGGCGT---------TCTCACCTCTCACTA--CCTGCCTGGGGAACACCCATTGCGCAGGTGGTAACTCTGGGTCCTTGTCTACATTTTGAAATATATGTTGG + +>hg18.chr2(+):70742773-70743272 +AAGAGAATGGATTGTCTAATTTTTAGGAGCCAACAAATGCTCATTAATCAATGCCCCACGGAAGAACATGAGAAGACAGTGTTGGCATTTAAAACAATAACTGTGGCCATTACCAGGCCCCAGGATGGACAGATAGGGACAAGGACAGGGATACCCAGCATTTCTCTGAGAGCTGGTGCAAGAGGATTAATCCTGAAGGGCTCATTTCTGATTCTCCTCTGCTGGACAAAGAATGACTGAGTTGGAACCTCAGAGGGTGCAAGTCAAGGTGCCAAGAGTAAGATGCCAGTTTCGGTCTGTAAGCAAGTGTTTCTGGGGGTGAGGGAAGGTCAGGGGAAACCTGACCACTGGACAGGAGTGAGGCAGGTACAGTGCATTGCTCCAGGTGTCATGCAAAGCTAGAAAGTCAGCATTTCCTCTGTTGTTTTGATCCTCCTTATACAACCCAAAGCCAACAGAGGATTTCAACTTCCCCAAATTTCTGCCCTGAGCATTAAAC +>mm8 +AGGAAGATGGATTGTC-------TTGGAGCCAGA-AGTGTTCACTAACCAATCCTCCTTAGGAGGATATGGGAAACCAGTGTTGGCGTTTAAAATAACAGCTCTGCCTATTGCCAAGCTTCAGGATGCA-AGAGAGTGATGGGCTTGGGAATGCCAGCCGTGTCTTTAAGAGTTGGTGAGAGAGAATTAACCCCAAAGGACTCATTTCTGACCATCCTCTCCTGTACCC--TCTGACTGAGTTGGGACC-CAAAAAGCCAAGGTCAAGATGCCAAGAGCAAGAT----TTTCTGGTCTGTGGGCAAGAGCCCTTGGGGATGTGGGAAGGCCAAGGGACACCTGGCTGCCAGGCAAGAGTGAGGCAGATACA-------GCCCTGCATAGCATGCAAAGCCAAAGGGGTA----------------TCTGA-CCTCCTCACACAACTCAATGCCAGCAACAGATTTGGATGTCCCAGAATTTCTTCCCTGAGCATGAGAC + +>hg18.chr2(+):70744065-70744564 +CAGGACTCCACTTTCTCCTTCTTTTTGCTCTTTTTCAGGAAGGAGGGGGTTCGGAATTTCTTTTTCTTCTTTGAGGGAGACTTGGAAGGTGAGCCCTCTGGGGACATGGGGCCGCTGGTGACCGACTCGGTTTTGTCCTTAGAGGTATCAACATCCGTGTCAGCACTGGTGGTCATCTGGCTCAGGCCTTTGCTGAGGATTTCCTCTGCCGTCTGCTCCTCCTCCCTCCCGTTGACCACCACCCCTTCCGGCTGGGTTGTTTCGGGCTCTGTGGTGGCGGCTTTGCTTGTTTCTGTCTTCTTAGTACCTTCTAGAAAAAGATCAAAAGATATGACCTGTAAGATTTCATTCAGGTGACAGCTTCCACCTGGGGCTAACAGAACCATTTCTAGGGAATTCTATAAAATCAATCCAGAGCGAGGGGAGGGCCAGCCTGATGTTGAGGGATGGCTACCAGAGACAGATGGAAGGACTGGGTTCTGATCTGCACCTTCCATGT +>mm8 +CAGGATTCCACCTTCTCCTTCTTCTTGCTTTTCTTCAGGAACGAGGGGGTTCGGAATTTCTTTTTCTTTTTGGAGGGTGACTTAGAGGGCGAGCCCTCTGGGGACAAGGGGCCACTGGTAACTGACTCGGTTTTGTCCTTGTAGCTGTCGCCATCAGTGTCAGCGTTGGTGGTCATCTGGCCCAGTCCTTTGCTGAGGGCCTCTTCTACGCTCGGCTCCTCCTCCTTCCCATTCACCACCAGCCCTTCTGGTTTCACTGGCTCAGGCTCTGTGTT---GGCTTCGCTGACTTCTGTCTTCTTGGTA---TCTAGGAAAAGACCAGAAGACCCAACCTGTAAGATTTCATGAAGGCG--AGTGT----------TCAACAGAACCACTTCTAGGGAGGTCTGGAG-------CCAGG--GAAGTGCAGGCTGGCATGGGGTGGGAGAAGGATCCTGGAACAGAGGAGGGGTGGCGT---------TCTCACCTCTCACTA + +>hg18.chr3(+):172801314-172801813 +ATTTCATTAGCTCTCTCCTTCACCTTGtttattaattctacaagcatttattgccatctcctatgtgccaagcactggtccaggctctggggatacactatgaacaaaatacagtgaagtccctgccccatggagcttacattctagtagggggagacagacaaacacataaatacaaaatatcagagggtTCAAAACAGCTTAGAGGTATCTTGCCTGAATTCTGTTTACTGCATATCCTCATTCTTGGGCAATGATAAAGTGAAGAGAGAGGCCAACAATGGGCTGCAGCAATGTTGctagtcccagctctaccatctacacattgagtggatttaagtgagttctcatctgatctgagcctcagtttcctcatctataaaatggggagaaattggattaaattacttataagggaaagggtcctttcaggctttTTTCATGAGAGTAGGGTGCTGAAAATCAAGAGCCAGTTTGTTGACTCCTCTAAGGtttaaaa +>mm8 +AGCTCATCAGCTCCCTCTCCTGTATAATATTttcactccacaaacatttacccacatgtcctttgtactaggcactgtttcagagtctgaagacaaac-----taaacaacctatgaagtctctgccgtgtccaggtaccattctagtagtgg-----agacaaagaaacaCAG-------ATTACAGGATTCGAAAGAGC--AGAAGACGCCCT------GTCTGAAACCTCCATGTCCTTCGTCTGGGGTAATAATGAAGTGAGGAGAGA---CTAACACTGGGTGCAGGAGT-CTGTT---------------GTACATCTGATGGGCAGGTCTACATCATTACTCCTCCAATGTAACCCTCT---------GCTGTACCATGGGGAGGG-TTAAAGTAAATGATTTATTATAGGTC----TGTGCCAGACCTTTCTAATGAGAACATTTTGTACAAAATCAAGAACCATTTTTTTTACTGCTTTAAGGtt----- + +>hg18.chr3(+):172812085-172812584 +CAGGGATCTTCGACACCTGGAGTCATTTTAGACCTGAAAACAGAAGTTTCCACATTTAAATTTTACACCAGCAGTCACTGGCATACCCCTTCAATAATTTTTATTATATCCTTGTATTACTGGAATTAATTTGATTTTAAAAACTTAAATGGAAGCTGGAGGGTTTGACCTGGTCTAGTCCTAATTCAGTTAAGGACTAGTATTTAATtggctcacgtctgtaatcccagtgctttgagaggccaaggcaggaggatcacttaaagccaggagtttgagaccagcctgggcagcacagcgagacacggtatctacaaaaaatttttaaaaattagctgggtgtggtgacacgggcctgtagtcccagctactcggaatgctgagccaggaggattgcttgagcctaggaattcaaggatgcaatgagctgtaactgcaccactgcaGTTTTTTCTACTGCACGTGACAGTAATAAAAAGCTATTAAAATAAAAAATAtt +>mm8 +CAGAGA--------------AGTCCTTTTAAACCATGGAAGTGTGATACTCACACTTAAATCTGAGACCAGCAACTACGGGA--GTTCTTTGGGTCATATCCCTGTAAT-------AAAGTGAAATTAC-----TTTTAAAATCTTACACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGAT---AGACTATTAAAATACtatgtatg + +>hg18.chr4(+):74565827-74566326 +ttttttatatgttgactgacaggttgttttcatattttggctattgtgaataatgaggtaataaacaccgaagtgcaggtatatcttcTTAATTTTTTAtttttaatttttgtgagtacatagtaggcgtacatatttatatatctttgagatactgatttcacttcctttggatatatatgcataagagagattgcttgattatatCTGTTCTGGCCCTTTGTTCCTTTAACATTTGCAGTATTTTAAGTTTTTTTTTGGTTGTCTATTTGATTAAGTATTGTGCATACTTAGCCTGTGGACTTTTGTTCCAACTCAGTAGATTTTTTCCAGCGAAACACAAAGGTAATTTTTTTTTCTGGTTAATATTTAGCAAGAATTCTGCAGAGTGATCAAAAAAATCAAATACTCAGTATTTCAGAAATAGATTAAATAGGTTACTTTTTTACTGATAATGTGAAAGAATGATATAAAAACTTGATTTTCCTCAACAACATTA +>mm8 +--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTCTTTTC-TTCTTTAACATTTGGAGTATGTTA--------------CAACTTTTGGAAGGAGGATTATTCTTAC----CCTGTGGGCTTTTATTCCAATTCAGCAGATTTTTTTCAGTGAAACACAGCATAAT--TTTTCCCCTAGTTAATAATTACCTAGAATT-TGCACCAGGACCAAAAAA---AAAGCCTATGTATTTCAGAAATAGATTAACTAAGTTACTTTTTAACAAGTTAGGTCAAAGAATACTATAAAAAGTTGTTTTTCCCCAGTCACATTG + +>hg18.chr19(+):10684644-10685143 +CTGCACGCACTGCTGCACAGTGACAACACGGCCGCGCTGCACCACCTCACGGTCCACAACATCGCCTACCAGGTGAGCCAGTGCCCGGGGCAAGGTGGGCGGGGGTGTCCTAGGTGCGTATGCCCCACGCTGACCTCCCCTCCCCGCAGCTGCAGCTCATGAGCGCCGTCCGCACCAGCATCGTGGAGAAGCGCTTCCCGGACTTCGTGCGGGACTTCATGGGCGCCATGTACGGGGATCCCACCCTCTGTCCCACCTGGGCCACTGACGCTCTGGCCTCTGTGGGAATCACACTGGGCTGACCTGGCATTGGGAgagggagggaggaaggaagggagggagggGCTGGAAGATACTGAAGGATTCCTTTTTGAAAGGTTTTTTTTATTGTAACTTACAGAGTGTGTCTGTGTCTTCTTGAGGAAGTGGCCTGTCTGGGTCCCCCTCCCAGTCTGAGCGTCATTGCAGTGGAATATCTCCCCTTCTCACCAATCATAAC +>mm8 +CTGCATGCCCTGCTACACAGTGACAACACTACAGCACTACACCACCTAACCGTGCACAACATTGCCTATCAGGTGACCTGGAGGGCAGGGCGGGTGGGGCGGGGACACTCTTGGTGCTGGTGGCTCACACTGATGCTTCTGCCCTGCAGCTGCAGCTCCTGAGTGCCGTGCGCAGCAGTATCTTGGAACAGCGCTTTCCTGACTTTGTACGAAACTTCATGCGCACTATGTATGGTGACCACAGCCTCTGTCCTGCCTGGGCCGTTGAAGCACTGGCCTCTGTGGGAATCATGCTCACATGACCTGGTTGCT-GGGAAGGACACTGGGGTATGGGGA---------------ATTCTGAAGGATTCTTTTTTAAAAAGATTTTGTTACTATTGTTTTCATCTTGTGTCTGTC--TTCTT-------------------------------------------------------------------------------- + +>hg18.chr19(+):10689340-10689839 +GCAACGAAGTGATATTTATATGAACCAATGGGAAATTCTTAGGGAACGAGGTAGTAGCTCAATCCCCAACACCATTGGTCCACATTGTCTACTGGCACGTCTGCCTGCCAATAAGATGGTGGAACTTCGCCAATGGGCAGAGCCAACGTGCCTTTTTCGGAAACACCCCCTTCCTCTCTTGACAACTTGCTTTCTGCCGCTATTGGCTGTTGCACAACAGTGACGGTTCTTTTGTCCAATAAGTCAGCAAGACGGTCCCCAGGGGGAAGGTTTACTCAACCATAGGCCCGTGCCTAGTTTTTATTGGCTAGTGTATCCGAGTGGCGGTGCAGCAGGCCAGTCGCGTGCGGCGCGAGTGCTTTGGGCGCAGCCCCCGGGGCCGGGGCGGGAGGTCGCTCGGGTCGGGTGTCGCCTGAGAACCGGATGAGGCGGCGACCGTGAGGCCGAGCCGGGAGCGGGCGTCTTGCCGAGGCCCGGGCGGGCGGGGAGCAACGGCTAC +>mm8 +GTAGAGAAGTGATATTTATATCAGCCAATGAGAAATTTTTACGGAATTAACTAGTGTCTGGATCCCTTACACCCTTGG--CAGGTT-------GACGTTTC-TGCGACCAATAAGCCAACCCGAATCACCTAGTGAGCGAGGCCTCAGTGTCTTTTCCAGAGACCCCGCCTTCCCGGTCTGACAACCCG-GTTTGACTTCTATTGGCTTTCACTTAAGAGTGACAGTTTTATTACCCAGTGAATTTGTGAGAT--------------TAGCCCTTC----------CTCGTGCCTT--TTTTATTGGCTCACGTTCTTGAGTGGCAGTGCTTTGAACCAATTGGATATAGCAGTAGGGTTGCGGACTCCGCCCCGGAGGCCGGGAGGGTTGTTCGCTCGGGTCGGGTGTCGCCTGAGAACCGGATGAGGCGGCGACTCTGAGGCCGAGCCGGGAGCGGGCGTCGCGGCGGAGACCGGGCGGGCAGGAAGCAACGGCCAC + +>hg18.chr19(+):10689256-10689755 +GTTTTTCTGATTGACAGATATGGTTCTCAATGATAGTCAAGATTCGGATGTTAAAGCCCGCCCTCTTTTGCCTGGTTGGCTGGAGCAACGAAGTGATATTTATATGAACCAATGGGAAATTCTTAGGGAACGAGGTAGTAGCTCAATCCCCAACACCATTGGTCCACATTGTCTACTGGCACGTCTGCCTGCCAATAAGATGGTGGAACTTCGCCAATGGGCAGAGCCAACGTGCCTTTTTCGGAAACACCCCCTTCCTCTCTTGACAACTTGCTTTCTGCCGCTATTGGCTGTTGCACAACAGTGACGGTTCTTTTGTCCAATAAGTCAGCAAGACGGTCCCCAGGGGGAAGGTTTACTCAACCATAGGCCCGTGCCTAGTTTTTATTGGCTAGTGTATCCGAGTGGCGGTGCAGCAGGCCAGTCGCGTGCGGCGCGAGTGCTTTGGGCGCAGCCCCCGGGGCCGGGGCGGGAGGTCGCTCGGGTCGGGTGTCGCCTG +>mm8 +-----------------------------------------------------------GCTCTCTTTCCTCTTACTGGTTGGAGTAGAGAAGTGATATTTATATCAGCCAATGAGAAATTTTTACGGAATTAACTAGTGTCTGGATCCCTTACACCCTTGG--CAGGTT-------GACGTTTC-TGCGACCAATAAGCCAACCCGAATCACCTAGTGAGCGAGGCCTCAGTGTCTTTTCCAGAGACCCCGCCTTCCCGGTCTGACAACCCG-GTTTGACTTCTATTGGCTTTCACTTAAGAGTGACAGTTTTATTACCCAGTGAATTTGTGAGAT--------------TAGCCCTTC----------CTCGTGCCTT--TTTTATTGGCTCACGTTCTTGAGTGGCAGTGCTTTGAACCAATTGGATATAGCAGTAGGGTTGCGGACTCCGCCCCGGAGGCCGGGAGGGTTGTTCGCTCGGGTCGGGTGTCGCCTG + +>hg18.chr13(+):93889844-93890343 +AATGCTTTCAGAAAAGGAGGAGGCTTAATCAATATTGGGGGGGGGGTTATTATTAGATATCACAAATTGTCAGGTCTATCTTTATTTGAAGGTAGAGGTAGCCTCAAGCACTTTAGTTGGGTTTGTTAAACAAGCAAGCAAAGCGGAAACTACAGCTAAGCATCTTCTGAATGAGATCATCATCACTATAGAAGAACCTATGTCAAAGATCTTCAACTCAAGAAGGAACAGTGAGGATTAGTTCCTTTATTGTCAGCGTCAGAACTGTGGCTTGGCCAGCCTCTTCTCTTAGGTAAGGCATGAGCA--CTAGGCTTCTTCTGTGTATCTCTTGCTGCTTAAATGTGTCTCCATTAGGGGTGTATATCCTTTTCGAAGTCTTCTATATTGAAGAAAAGCCAACAGCACAAAAAGACCAACCAAAGCCACCAGTGTTCCCATGACTACTAAGAGAGTTGTGGGCCAACCTGGAGTTTCTTCAACTGAAACTAAAGCAGAAG +>mm8 +--TGCTTATAGAATAGAAAGAGGCTTATTCAATAT-----AAGGACTTTTAATCAAAGGTCACATATAACTAGCCACACCTTACTTTGACCGTGGTGAATGACCCAAGCATTTTGTCTGTGT-------ACAA-TAAGCAAAGCAGCAACTAGAGATAATTGTCTGCTAAGGCATATCATCATCACTACTAAAGAGCACACGCTGAAGAGTTCCACCTCAAGAAGCGACGGTG-TAATTAGTTACT-----------------ACCCAGGTCAGGCC------------------AGGTAGGAGCA--CTAGGCTTCCTCCGTGTATCTCTTGCTGCTGAGACCTGTCTCCATTAAGGGCGCATAGCCTTTGCGAAGCCTTCTGTATTGAAGAAAAGCCAGCAACCCCAAGAGCAAGACGAAAGCTCCCAGGATTCCAATGACCACTGAGAGAGTTGTGGACCAAACTGGAGCTTCTTCCTCTGCAATGAGAGCAGACA + +>hg18.chr2(+):151974175-151974674 +tttgtatttttgttttttttaagtagagacggggtttcaccatgtgttggccaggctggtctcgaactcctgacctcagactcggcctcccaaagtgcttggattacaaggtgtgagtcaccgcgcccggccAGCTCTTAGTCTTAAACCCAACAGTACGTTATCTCCTTTTGCTAACTGATTTGTTGCTAAAACTTCAACAAGCACTGGACTTGGAGTTTGAACACTTAGTCTGAGGGCCCACTATGTTCAGTCTAGTGAGTCTGAGCAATTAACTCACATTTTGAATTTCAAGTCTCTCGCCTTAGGCAAAACACCACCACCTGATGCTCACCAGAGGGGCGTGACGCGGCAGCTgggcagggaagggatgggaagggatgggaagggaGGCGATCGATAACTCCGGTGTGCCGCTGACTGTTGGATTGGCTCGAACTTCTCCCGCCAGGCCTAACCTACTCCCGCGCACTCCTGGGCCCGCCCAGCCGCCATCTTG +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------CAAGCCCAACAGCCTGCCATTCACTCTCAATAAATGGTTTTGTG-GGCTCCTTTGGGAAGCACTGGAGT-----TTTGCAAACTTGGTCGGCTGAGCAAGTAGCTGGAGTCAGGTGGAGTGGGGC-ACTAATTTACATCACCCATCTCTAGCCCCGGGCTGGAGGCGATACACACCCCCC--GAGGTGCTCcgggggcgggg--gcgggggcgggggcgggCAGCA---------------------GGCCATCGAGCAGCCCGGCGCGCCACCGCCCGTTGGATTGGCTCGAGCCTCTCCCGCCAGGCCTgcccggctcccgcgcgccgctgggcccgccccgccgccATCTTG + +>hg18.chr2(+):151974202-151974701 +gacggggtttcaccatgtgttggccaggctggtctcgaactcctgacctcagactcggcctcccaaagtgcttggattacaaggtgtgagtcaccgcgcccggccAGCTCTTAGTCTTAAACCCAACAGTACGTTATCTCCTTTTGCTAACTGATTTGTTGCTAAAACTTCAACAAGCACTGGACTTGGAGTTTGAACACTTAGTCTGAGGGCCCACTATGTTCAGTCTAGTGAGTCTGAGCAATTAACTCACATTTTGAATTTCAAGTCTCTCGCCTTAGGCAAAACACCACCACCTGATGCTCACCAGAGGGGCGTGACGCGGCAGCTgggcagggaagggatgggaagggatgggaagggaGGCGATCGATAACTCCGGTGTGCCGCTGACTGTTGGATTGGCTCGAACTTCTCCCGCCAGGCCTAACCTACTCCCGCGCACTCCTGGGCCCGCCCAGCCGCCATCTTGGTCTAGGAGGGAGCGCGCCGCACGCGT +>mm8 +---------------------------------------------------------------------------------------------------------------------CAAGCCCAACAGCCTGCCATTCACTCTCAATAAATGGTTTTGTG-GGCTCCTTTGGGAAGCACTGGAGT-----TTTGCAAACTTGGTCGGCTGAGCAAGTAGCTGGAGTCAGGTGGAGTGGGGC-ACTAATTTACATCACCCATCTCTAGCCCCGGGCTGGAGGCGATACACACCCCCC--GAGGTGCTCcgggggcgggg--gcgggggcgggggcgggCAGCA---------------------GGCCATCGAGCAGCCCGGCGCGCCACCGCCCGTTGGATTGGCTCGAGCCTCTCCCGCCAGGCCTgcccggctcccgcgcgccgctgggcccgccccgccgccATCTTGGTCGTGGAG-GAGCGGGCTGCACGCGT + +>hg18.chr5(+):113796627-113797126 +agtcccatcgaccacccaagggctgagtagtgcgggcgcacagcacgggactggcaggcagctccacctgcagcccctgtgcaggatccactgggtgaagccagctgggctcctgagtctggtggggccttggagaacctttatgtctagcccagggattgtaaatacaccaattggcattctgtatctagctcaaggtttgtaaatacaccaatcagcaccctgtgtctagctcagggtttgtgaatgcaccaatcgacactgtatctagctactctggtggggccttggagaacctttgtgtggacactctgtatctgtctaatctggtggggacgtggagaacctttgtgtctagctcagggattgtaaacacaccaatcagtgccctgtcaaaacagaccactcggctctaccaatcagcaggatgtgggtggggccagataagagaataaaagcaggctactggagccagcagtggcaacccgctcgggtcctc +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr5(+):113725416-113725915 +AGGCGGAATCCCTGCCCTGGAGCGCCCTGGCTCTGGACTGCACCCCCCTAGGGTTTGTCCTGCAGATTCCCCTCCCCATCTTTCTCTGCCACACACGCTTCCCTAAGCCGCGCGCGCCGCAAACTCAGTCTCGGTCCCCGCAGGTGATGTCATGCCCATTGTTTTGGTGCGCCCAACCAATCGGACTCGCCGCCTGGATTCTACCGGAGCCGGCATGGGCCCTTCCTCGCACCAGCAGCAGGAGTCCCCGCTCCCGACCATAACGCATTGCGCAGGGTGCACCACCGCTTGGTCTCCCTGCAGCTTTAACAGCCCTGACATGGAAACCCCATTGCAGTTCCAGCGCGGCTTCTTCCCAGAGCAGCCGCCGCCGCCGCCGCGCTCCTCACACCTGCATTGCCAGCAGCAGCAACAGAGCCAGGACAAGCCGTGCCCGCCCTTCGCGCCCCTCCCGCACCCTCACCACCACCCGCACCTCGCGCACCAGCAGCCGGCCAGC +>mm8 +AGATGGAATTCCTGCCTTGGAGTGCCCTGACCCCGGCCTAAGCCCCCAGGGGTTTCATTCTGCAGGTTCCCCTCCCAACCTCTCTC--ACACACATGCTCCCCTAAGCCGCGCGCGCCGCAAACTCAGTCTTGGTCCCTGCAGGTGATGTCATGCCCATTGTTTTGGTGCGCCCAACCAATCGGACTCGCCGCCTGGATTCTACCGGAGCCGGCATGGGCCCTTCCTCGCACCAGCAGCAGGAGTCCCCGCTCCCGACCATAACGCATTGCGCAGGGTGCACCACCGCCTGGTCTCCCTGCAGCTTTAACAGCTCTGACATGGAAACCCCATTGCAGTTCCAGCGCGGCTTCTTCCCAGAGCAGCCGCCGCCACCGCCGCGCTCCTCACACCTGCATTGCCAGCAGCAGCAACAGAGCCAGGACAAGCCGTGCGCGCCCTTCGCGCCCCTCCCGCACCCTCACCACCACCCGCACCTCGCGCACCAGCAGCCGGGCAGC + +>hg18.chr5(+):113725066-113725565 +AAACTTTTTCTCCCCAAAGCCAGTGCCCCCGCAGTTACTTGGCGGGCAGCCGGCAGCCCACTCTCGGCGGGATGATCTGGGAGAAGCGGGCGTGGGACGAGGGGGCTGCTGTTTTGCAGCCCTGCGAGGCGTGCAGTCGGAGAAGTGGTCGGGGTTCCACACCGTCCCTGAGCCTGCCCCCGGCCAAGGTGGCCCGACGTGCTGCAGTGGCTGGCGCAGGTGATCCGGGCAGCGCGTCCGGCACTAGTCAAGGGGGCAGCGGCACGGGAGGGAGGGGCGCCTTTCTCTTTTCTCCTCCCCCTGCAGCCCAGCTGCACTGCGTGGGGGCTCTCCATCTCCACGCAATCAGCAGGCGGAATCCCTGCCCTGGAGCGCCCTGGCTCTGGACTGCACCCCCCTAGGGTTTGTCCTGCAGATTCCCCTCCCCATCTTTCTCTGCCACACACGCTTCCCTAAGCCGCGCGCGCCGCAAACTCAGTCTCGGTCCCCGCAGGTGATG +>mm8 +AAACTTCTTCTCCCCAAAGCCGGTGCCCCCGCAGTTACTTGGCTAGCAGCCTGCAGCCCACTCTCGGCAGGACGATGCGGGAGAGAGA---GTGGGGCGAGCAGG-TGCTGCCTTGCAGCCCTACAAGGCTAGAGGGCGGGAGAGTAGCTCGGGTTTCTCCCTGCCTTGGCGCCTGCCCCAGACCAGGGTGGCCAGACATGCTGCAGTGTCCCAGGCAGGTCATTCGGGCAGCATGTTCCGCACCAGTCA-GGGGGCCGCGGCAGTAGAGCAAGAGCAATCGCTCTC---TCTCCCACCTCTGCAGCCCGCCTGCATGGGGTGGGGGCTCAGTCTTCCCACGCGATCCGCAGATGGAATTCCTGCCTTGGAGTGCCCTGACCCCGGCCTAAGCCCCCAGGGGTTTCATTCTGCAGGTTCCCCTCCCAACCTCTCTC--ACACACATGCTCCCCTAAGCCGCGCGCGCCGCAAACTCAGTCTTGGTCCCTGCAGGTGATG + +>hg18.chr2(+):165249579-165250078 +GTTTTAGTGAAAACAAATTTAATATCATCTTGTTTGAACAAAGCTTTCAGAATAAGTGAGCAATTAAATTCTTAAAGTAGGGACAGAACACCAACAGGCTCTAGACTCCGGAAGAGCTGTAAGCCGACAAATGGGCATTGTTTTGCTTAACAGTTTTAGCTTCAATGTAAATATATATTATTACTTAGAATATTAGCATCTGAACTATATAATGACTATTTTATCATTTTACTTGAATTAAAACCAGAATTTCTGGAACTTCCAAATAGTCTTTAAAGTTTTTCAATATAAACATAAACTAACCCCTATTCCTCTCTACATATCAAATGTGAAATAACTGTCACAATATATCAGCATTTTCACAGAAAGATGTTTAAGGCTTCTGGCACATAAAATGTGTAATTTCTGTGTGACAATGTCATAATTATATACAGAAAATATTTAAAATTCTTGTAGAATTTAAGTTCTAAAGATTAAAAAAACAAGAGTTCCATGTTAA +>mm8 +GCTTTA--GGAAA-AAGTTCAGTGTCAGG-TGTCTGAGC--AGTCTTTTGAATAAAAGAGGAATAAAATTAT-TAAGGAAGTCCAGGACACTAACACGTTCTAAACTTCTGGGCCACTGGAAGCCGACAATCAAGTACTGTTTCTCTCAACGATTTTGGCTTTCAGGAAAATATATATTATTATTTAGATGGCTAGCATCTGAGATACATAATGACTAACTTAGCATTTTCTTTAAAAAAAAATCAGGATTTTGCAAATGTCTGA------CTTCAAAGTTTTGAATGTGGACATAAACTAACC-CTATTCCTCCTTATAG--CAAAAGTGAAATAACTGCCACAATGTATCAACATTTTCACAGGGATA-TTTTAAGGCCTCTGGCATAGAAAATATGCAATATCTGTGTAACAACATCATAATTATATACAGAAAATATCTTAAATTCTTGTGCAATTTTACTTCTAAAGGTTAAA---------GTGTTCTATTTA + +>hg18.chr2(+):165249502-165250001 +TTTAAAAAGCACCCCAAATATACAACTTGCTTTTATTAAATTGAAAAAAAAATCCCCAAGAGGCAGATATCCCAGTAGTTTTAGTGAAAACAAATTTAATATCATCTTGTTTGAACAAAGCTTTCAGAATAAGTGAGCAATTAAATTCTTAAAGTAGGGACAGAACACCAACAGGCTCTAGACTCCGGAAGAGCTGTAAGCCGACAAATGGGCATTGTTTTGCTTAACAGTTTTAGCTTCAATGTAAATATATATTATTACTTAGAATATTAGCATCTGAACTATATAATGACTATTTTATCATTTTACTTGAATTAAAACCAGAATTTCTGGAACTTCCAAATAGTCTTTAAAGTTTTTCAATATAAACATAAACTAACCCCTATTCCTCTCTACATATCAAATGTGAAATAACTGTCACAATATATCAGCATTTTCACAGAAAGATGTTTAAGGCTTCTGGCACATAAAATGTGTAATTTCTGTGTGACAATGTCAT +>mm8 +GAAACAACAGACTGTAAATATATAACTTGCTTTTATTAAACGGAAAAAGGTTTGTCAGGATGACAGATACTCCAGTAGCTTTA--GGAAA-AAGTTCAGTGTCAGG-TGTCTGAGC--AGTCTTTTGAATAAAAGAGGAATAAAATTAT-TAAGGAAGTCCAGGACACTAACACGTTCTAAACTTCTGGGCCACTGGAAGCCGACAATCAAGTACTGTTTCTCTCAACGATTTTGGCTTTCAGGAAAATATATATTATTATTTAGATGGCTAGCATCTGAGATACATAATGACTAACTTAGCATTTTCTTTAAAAAAAAATCAGGATTTTGCAAATGTCTGA------CTTCAAAGTTTTGAATGTGGACATAAACTAACC-CTATTCCTCCTTATAG--CAAAAGTGAAATAACTGCCACAATGTATCAACATTTTCACAGGGATA-TTTTAAGGCCTCTGGCATAGAAAATATGCAATATCTGTGTAACAACATCAT + +>hg18.chr4(+):187745932-187746431 +AAGCTCAAGTATTTTATTAATAATTTATTGTCAGTAAGAAAGACTGGCTAATGGTAGTTTTCATTAAAAACCTTTACAAGACCATTGCATCACAAATATACAGACACTATAAAAACTGTGTCATGGTGGTTTTGGTTCTAAACAGGTATGCAGAAGGTCCCCGTTACACTTTCCAATAATGAAAAATGTTTATAATTCTAAATACAGCAACCCATGTAAGACATGTTCATGTATCTGATCTCTCCTTCATCCTATGTACAGCTAGAAATGAATGACTACACTGAAATGTACTAACAAAATGTCACACTTCAGTGGAAAAAGACAGAATGAAACCCTGGTTATAGTAAAAAAAAAAAAATCAGGGTGCTAGATAATGGCACTGACACCACCAAAATTCAGTTGAAACAAATGCACAAAATATCTTGGAAATCTAGTTAAAACTATGAAAAATCAAATCTGTACATAAAATTTACAAAAAAAAGAGACAGGAAAATTAAAA +>mm8 +AAGCTAAAGTATTTTATTAATAATTTATTGTCAGTAAGAAAGGCTGGCTAATGATAGTTTTCAGTAAAAACCTTTACAAGACCATTGCATCACAAATATACAGACACTATAAAAACCGTGTCGTGGTGGTTTTGGTTCTAAACAGGTATGCAGAAGGTCCCCTTCACACTTTCCAATAATGAAAAATGTTTATAATCCT-AATACAGCAACCCATTTAAGACATGTCCA-GTAACAGGTC--GTCCACACCCTATGTACAGCTA---------CACTGGACCGAAATGTGTCAATGAAATGTCATACTTCAGAGGAAAAGAACAGCGTGAAACCCTGGTTACATCAGAAAA-------TCA-GATGCTAGGCAACGACGCTAACACCACACAGATCCAGCAGAAACAAAAACACGAGGCGTCCTGAAAACCTAGGTAAAACTAGGAaaaatcaaaTCTGTACATAAAATTTACACAAAGAAGC-----AAAAATTAAAA + +>hg18.chr2(+):27572711-27573210 +TTTTTCCCGCTGTAATATCCAGTACAGTGTGTGCACACTTGGGGCTCAGAAGCTTCTACTGCCTTCCTTTCTGAGAGGAGAGGATAAAATGGGACCAGTGGGACTGACTGTGTGTGCTGAGCATGTGATCAAGCCATGGGCCAGGTCCTCTGACTTGTGCTGACTTGGTGACCCTGATCTCTGGCCTCGGAGGACACTTGCCCAGGGATTCTCACTGCCGTGGGTGTTGTCCTGCACTCCCAGGCTCCAGGTCCTCTGTAGAAGAGGGCATTGTCCCGGTAGGGCAAGAGTCCCGAGCCTCAGGTCTTCCTCTTCAGGGGCCAAAGCAGAGGCTGGCGAGTCAGGGTGCTTGCAAAGAGGAAGCCCAGGAGTTTCCCTGGGGTTACCAGAGGGCTGGGGGCCTAGTGACCAGGAAAGGGTGGTGCTCTGAGAGCCCAGGGTGCTTGGGTTAATCATCACTGGGGCTCAGATAAGGCCCTGCCAACTGGAAGCAGAGTCA +>mm8 +-CATCTCCTCTGTGATATCCAGTTCAGTGTTCGCACACCTGGGGTCCAGAAGCGTCTATTGCTTTTCTTTCAGAGAGGAGCAGATAAAATGAG-CCAGTGGGGC------TGCATGCTGA-CATGTGATCAAGCCATGACCTGAGTCCTCTGACTTCTACT--------GACCCTGATCTCTGGCCTTTGGAGGCATTTGTTCAGGGATTCTTTCTGACCTGGG---TGTTCTGCAAGGGCAAAA----------GCAAAGAACGT----CTGGTCCTCTTCTCCAAGGGCAG------------------------------------AGGCTGGCAAGCCAGAGTATACGCAAAGAGGACCCTCAGGAGCTCCTGTGGGCTGGCCGGCGACAGGAACGGGTGTTGA--AGAGAGGGGTGGTGTTTTGAGAGGC-AGGGTTCTTAGGTTAATCATCTCCATGGCTCAGATAAGACCCTGCCAACTGGAAGCA-AATTA + +>hg18.chr1(+):111758461-111758960 +GGTTCTTGTGTTTACAGTTTATTTAATGGAAAAGAGATTGGCCTATTCTGGTTTTGATGCCTGCTTTGCCCCGGGATGAGAAGGCTTCCAACATGTCACTTAGAAGAAAAGACAAGGGTTTTCCCTGGTTTCTGACACCAGAGGGGCTTAGGCTTCTTCATCCACAGCAGAGTTTTCTGGGATTTCTTTTTTTAGAGAAAGAGGACTTGTTTGAGGGGTTACTGAGTTGACAGAGGAATGGTTTCCATAGATGGGAACAAAGCGGTTGTCAAAAGCTAGAGGAGTTTGTTCCGGGAGCTGGATGACGGGGCTGGAGGACAGCATCATCCTGTTTTCAGCTTCCATCTGAAGACCCAAGTTACCCATCCTGGGGTGAGTGCCCACCTCAGAAGTCAAATTCTCCCCTCTTAAAGGCATAGTCTGCCCTTCAGGGGTGACTGATATGTTTCTGGAGGGGACAGTCACCTTTTCACGGGCCACAGCCTTCCTTCTAGGGGCC +>mm8 +GATTCTCATGCTTCCAGTTTATTCAATAGAAAGGAGATTAGCCCATGGTGACTTTGGTGCCAGCTTTGCCCCAACATGAGGTAACGTCTGTTGTATCACATAGAAGAAAGGACAAGTGTTTTCCCTCGGATTTGCCACCAATGGAGCTCATGATCTTTGATTCATAACAGAGTTTTCTAGGTTTTCTTTTTTTTAAGAGAAAGA-TTTGTTAGAAGGGCAATTGAATTGACA----AATGGTTCCTATCAGTAAGAGTGAAGCATTTTTCAAAAATGAAAGAAGTATATCATAGGAACAAGACAATAGAGCTGGAAGA----------------------------------CCAATTTCACCCATCTTGGAGTACGTTTCTACCTCAGTAATCAAACTTGCCCATTTTAGAGTTTTACTCTGTCCATTAGGGGTAGCTGACATCTCTCTAGGGGAAACAGTGGCCTTTTCAAGTACCATAGTCTTCTTCCTGGGAGTC + +>hg18.chr11(+):49124766-49125265 +TATAATATTCAACTTTATTTCAAATATACCAATTTTAAAATTTATCAATATACCCATTACGATTCTTTCTGAGTGACATACCACACAAATTCAATACGGATTCTCTAAAGAATCCTCTTAGGCTACTTCACTCAAAGTCTCTGCAGCTGCCTGCACTGTGAAGGCTGCAACATAAATCTGTCTCTTCACTTCTCCCCAGGCCTTGGAAGGGTCCACTTTGCTTTCAATATCAAACAGAGCATCATAAATTCCTGGGAATGACTCCCCTGCATACTTGTTGTGGCTGCTTGGAGCATAGATGACATGCCTGTTGATAAAATCGTTTGCTGTTTATTAGGTGCCCAAATGATATACAAGAGAAACACAAGAGCACTCTGCAATTCCTGGATTGCATATTCCTATAACAATTTGAACAAGCCACTTGTCAACTGAACTTCCAAGTTCAATCATCTCTGAAGACTATTATATGAAATCTATAGtaattaattatatttttatt +>mm8 +---attatCCACTTTTGTTTTGAatgtatgcatgtgtatatatatatatataAGCTCCATAGTTCCATAGGGAT--------------------TTTGTG-ATTCTGTAGAATGTGTTTAAGCTACTTCCCTCAGAGTCTCTGCTGCAGCTTGCACTGTAAAGGTTGCAATAGAAATCTGTCTCTTCACTTCGTTCCAGGCCTTAGAAGCATTGACTTTGCTACTTATATCAAAAAGGGCATCATAAATCCCAGGGAATGATTCTCCTGCATACTTGTTGTGGCTGCTTGGAGCATAGATGATATGCCTGTTGATGAAACATATCTTTGTCCATTAATTGCACAAGCAACATACAAGAGAATAAAGGCA-----CTATA---CACACATGTCATACTCCTGTCCTGGCTTGAATAAGTCACTTGTTACCTGAGTTT-AAAATGCAATAATATCCAGGCAC------------------ATAAATACATATAATTTTTGC + +>hg18.chr11(+):49124879-49125378 +CCTCTTAGGCTACTTCACTCAAAGTCTCTGCAGCTGCCTGCACTGTGAAGGCTGCAACATAAATCTGTCTCTTCACTTCTCCCCAGGCCTTGGAAGGGTCCACTTTGCTTTCAATATCAAACAGAGCATCATAAATTCCTGGGAATGACTCCCCTGCATACTTGTTGTGGCTGCTTGGAGCATAGATGACATGCCTGTTGATAAAATCGTTTGCTGTTTATTAGGTGCCCAAATGATATACAAGAGAAACACAAGAGCACTCTGCAATTCCTGGATTGCATATTCCTATAACAATTTGAACAAGCCACTTGTCAACTGAACTTCCAAGTTCAATCATCTCTGAAGACTATTATATGAAATCTATAGtaattaattatatttttatttcaaacaaataaattaaaGTGGTTCAGTGCTACAAAACTAACAATGATGATAGTAACCACAGCAATCATTCTTGGTATTTAATGtttacttgcaatttttctgatgtttagaa +>mm8 +GTGTTTAAGCTACTTCCCTCAGAGTCTCTGCTGCAGCTTGCACTGTAAAGGTTGCAATAGAAATCTGTCTCTTCACTTCGTTCCAGGCCTTAGAAGCATTGACTTTGCTACTTATATCAAAAAGGGCATCATAAATCCCAGGGAATGATTCTCCTGCATACTTGTTGTGGCTGCTTGGAGCATAGATGATATGCCTGTTGATGAAACATATCTTTGTCCATTAATTGCACAAGCAACATACAAGAGAATAAAGGCA-----CTATA---CACACATGTCATACTCCTGTCCTGGCTTGAATAAGTCACTTGTTACCTGAGTTT-AAAATGCAATAATATCCAGGCAC------------------ATAAATACATATAATTTTTGCTTTAATGAATAACTCAAAGTGGTTCAGATAAATAAAAATAACAGTAAGGACAGT--TGATGTTAATTGTGCTTAATACTTAAAAACAACTTATA-TTTTTATAGTTACTAAAA + +>hg18.chr7(+):26298700-26299199 +GAGAAGGCCCAGGGGAAAATCCATATAATTGACTGATTATCAGATTTGGTGACCAGGAAAGCAACAGCCTGTTTTTCAGTTCCGATGCATCATACTTTTCTCAAATTACACGGATTATTGAGGGGGATCGTCACGGAATGGGGAGCAACATGTCCTGCTGAAAGGAAGGGCTTCTATCTCTACAAGACACGTTAAAaatgatggtatcagaaaattagaacggggaggaggcttgcacatgatctccatcaaacctttcattttacagacagggaggctaaggccgagggacgctgagtgttgggaccaggatcattcagccagatgggagcagaaccaggcctacaacctggcaggcttctgacttccaccccgGAGTTATGTCCACCTCTGGGGCCTGGGAACTGGGTTTGGATTGCATAAGCTCCCCCTCCTCTCCCAGGAGGGGGCTGGGCTGGAGGCTGAGGCCTTCGCCAGGAAGAAGCAGGGACTGCTTGGA +>mm8 +GAAAAGGCCGCGGAGGAAACCCACGCTGTGAGCTGATGATCGGGTTTGCTGAGTTGGGAAGCAACAGCCTGTTTATCGGTTCTGACACATCACACTTTGCTAAAATTACAAGTATTGTTAA-GGGGATGGTCACGGGATG-------------TCTGCT-------------------TCCGCAAAGCACATGGAGAGCGATGG-ATCAGAAATTGAGAACACTGA------TCTTTCGTGATCTCCATCAACCCTTTTAGTTTGCGACAGGGGAAACCAAGGTCTGCAAGGGTGGAGC------------AGCATGCA-CCCGGTGGGAG-------------------------------------------GGGTGTGTGAAAATCCCTCTCGTCCGGGGAGTGGGCTTGT---------------------------GGGAGTGGCCGGAAGTG-GGCTGGGGGTATT------------ATGGAACTCCTTCAA + +>hg18.chr7(+):26297541-26298040 +CAGTTTAAGTGATGATTGTGGTTTCCCATGCAAACAGGTGTGGGGACCCAGCCTCAGGTGCCATTTGGGAAATGCTTTCCTCAGTCAGGTCCCTTGGCAGATCTCATTAGCTTTCCCCCCAAATGTTTTATTGAGACATTTCAAACATAGACAAAAACTGAAATAATTTTATATAAACACCATAGCCCACCACCTAGATGCTATGAACATTCTGCCATTCTTGTTTATCACGTTATTTATCCGTCCTCCTCCCCATCGGCAATCCTCCCCATAACTGTGGGGTCAGGGTTAGGAAGCTTAAGGTGACTCAGGTGGCGAATTCCGAAGGGTGCCGCTGGAGCACCTCCAGCCTCAACGTCCGGACTAATGGGGGCATTTCCTCCCTAACTCAATTTCAGGAAGCAGGAGGCTAGCTCTGCAGGGTGGGGGCGCACCTGGGCTGGGCTGCGCGGAGGCGGCGGAAGCACTAGGCGCGGCGCCCACAGGCGGACGGCTGGCG +>mm8 +-----------------------------GCACACAGGTGGTGAGAGCCAGCTCAGATGATC-TATAGGAA---------CCGGACATAT-CTTTGGCAGATCTCA-TAGCTTTCTCCTCATCTTTTTTAAAGGGAGATATTAAA--------AATATTG--------TTATACAAAAGTAAT-GCCCTCCATCGAGATCCTGCTAACATCTAGTCATGCTTGTTTGTTATTGGCTTCTCTCATCTTGATTCC------------------TCACTGCTGGGT--------------------------AGGGAGAAAGACCCGCTAGCTA-------------------------------------GGTGGCCTTTCCTACGTT-------------------AAGGCTGGCA----------------------------GTggcg-------ggtgggggtggggggc----------------ggcggcgggcg + +>hg18.chr16(+):80625865-80626364 +AATATCTTCCTCTACTTTCATATCCCTCTCCATCCAACCCTTCAGCCTGCCTCAGTTGGGATTTGTAGGAGTCCTGAAGCTATGGACCAGATCAGAGGTGCCTTCCCTTCCAGAATCTATTTTCCAAACTTCATCGATTGCCTATATTTATATGCATGCATGcacacacacgcacacacacacacacacTCTCACTCACTCCCGAGTCAGAAAAAGGACTCAGCACCCAGACATACTGCAGGCTCTTGAAGAAGACAGTATTTTCCTGTGAGCTAGAGGATCTTCCTGTTATTCTCCATGCAGTTCAAATTCTGTCAATTATTATCCAGTTAGTCATCGCTCCAGAGGTGGACTGTCATTAAAAAAAAATAGAAGGTGTGTGTTTGTGGGTGAGTATGTGCATGTGTTGTGTATGCAGGGGGTGGGGAGGGGCGAGAGCGGTCAAATAGGAAGTGCCTTGGTATTTATGTTGAAGTGCACACTGGTTTAAATTACCCAC +>mm8 +AGAGCCTTTTTTTGGCT-------------CATTGAGCCCTTAA-CCTGTCTCAG------TTGGCAGTAGTCCTCCAGATACAGGCCAGATCGGGGATGCTCTCTCTT--AGAATCCACTTTCCAAGCTTCACTGATTACCTGGAT-------------AacacacacacacacacacacacacacactcacacatacagatcacTCGGAAAAAGAACTCAAC------CAACACAGGAGGCATCCAAAGGAGA---------------------------------TTGTCTTCTT-----TTCCAAGTCTGTCAATCATTATCTGAGTAAACATCTGTC---AGGTGGGA------------------gtaggtgtgtgtgtgtatgtgtgtgtgtacgtgtgttgtgtgtgtATGTGTAAGTGTTGAG-------TGCCTTAGGGGAATGAGC-AGGTATTTATATCACAGTGCACA---GTTTAAATTACATCC + +>hg18.chr19(+):54159879-54160378 +AAGGATCCGGAGACTCCTTATCTCGCAGCGCAAACCTCAGGCAACTACAGGTCCTCCCTGCACCTTTGAGGTGCCCCTCCCCCCACTCAAGGTTCCAGAAAAATCCATGCCCTCGGAAACCCCAGAATCTTACTTTCCCGAGGCACCCCAGGACCCCAGGGTCATCAGTTCACAGGGCTGTTAGTGCTCCCATAAAACTCTAGCCTCCCAGAGGGACCCCAGCCCCCACCCTCCCGCCCACGAACCCCTGCATTTCCAGAATCAGCCCCAGGGCCCCAACCCCCCCAAGCCCCCATTTCACAACACGCTGGCGCTACAGGCGCGTGACTTCCCCTTGCTTTGGGGCGGGGGGCTGAGACTCCTATGTGCTCCGGATTGGTCAGGCACGGCCTTCGGCCCCGCCTCCTGCCACCGCAGATTGGCCGCTAGCCCTCCCCGAGCGCCCTGCCTCCGAGGGCCGGCGCACCATAAAAGAAGCCGCCCTAGCCACGTCCCCTCG +>mm8 +ATGACGTGACATATCCCTT------CATTGTGTGCATTGGACATATGGAGGTTCCCTTTGCATTACAGAATTACCCCACACTCAGCCCA--TCCCCAG----ATCCATGTTCTC--AGGCCCCAAAA-TTCTCTTTTGTGAGACACCAAAGGACCTCGAAGTCATCCCCTCCCCAGGGTCTCAGTGACCCGGAG-----------------------CCCAG----AACCCT-------GCGACCCC-------TCCAGGTTGCGCCTCCGGATCCGGACCCCCCCAAGCCTCCATTTCACAA-GGCCTCGCGCTCCAGTCCCGTGACTTCATCTCACTGGGTGGGTGGGGAGCGAGGTTCCCCTCAGCTCCGGATTGGTCAAGTATACTTTTCGTCTCCGCCTCACGCCACCGCCGATTGGTTAGTCTCGGGCCTGGGGCACCCCTCCTCCGGAGGTCAACATGCTATAAAAGGAGCGCTCCTTGCCGGGACTTAGAG + +>hg18.chr16(+):55552764-55553263 +AAAGTCTACATAGAGGACTGTTTCTGGggtacccagatgcagcgtcaaatgccatggaatactacagtgaggacattatcctttcaagctttcaaatcagagcaagggaaaggtcgatgctagagtttctctagcacccatgaagccctctccctttttctactgagttttactttacaggcaacagcaggcttcaagcttggggtcattgtcgggcaacagtatctggcaagaattcaatgtctttttctcatagtcattgtattttggcctctttctatttatggcaactgagagagaaagcttattcctagatatatgtatttaagtaaaaaataaatgaattcatggaaacatattaagcaattatccagataacataagggatggcaaaaatggtgcagatggtGGAGGGGAGACAAGTAGAAGTTGGGGTGCTCTTGTTGAATGTCTGGCTCTGAACTCTAGAGGAGGCCGCAGGGGCTGGGCAGGAAGGAGG +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr3(+):187840344-187840843 +CATTGTTTAAAAATAACTTAAATGATGATAAGTAGAACATTTTCCACCCAGATGGCCAAAGTGCTTAAGGAATCTCAACTGTGCTTCTGGCAGATGACTGTGGGGTTCAACTACCTCCCTGATCTAACAAGGGCTTTGCACACAGAGTGTCAGCCAGGAAGTCTGAATTCACCAAGCACCACTGGGACATAAGATAACTATTAGAGTGGCCAAGGAGACCTCCACAGCAAAGGTGTTAGGGGAGAGGGGGAGAATGGGACAGTCCTCCATATTCCTATTCAGGAGGGGACCTGCAAATCAGAATCTAATCATAAGAGCCTTGAACAAATGTTATGATTTCTCAGGAAACAGTTGGGAAACTTAAATTCATTTGTATGTACAGGTGGATATGAGGTTGCTCAAGGGTCTAAGGTTAGAATCATTGGGAAATGCTATCCAAAGTACTGACTTAGGAAAATCCAAGTTCAGAATTCAAGGTGAACTTGGTTAGCCCTTCCAG +>mm8 +T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTGATCAAACATTATAATTCCT-GGGAAAGGGTTAGGAAACTTGGATTTATTTACA--------CGAAA---GGCATGCTC-CGGATCCAAGGTTAGAA-CACTGACAAATCCAATCCAAAATATTGACTCA-AAAACTGCTTGTTTGGACCTCAGGGCAAGTCCTAGTAGGCTATTCTG + +>hg18.chr3(+):187840445-187840944 +GGGGTTCAACTACCTCCCTGATCTAACAAGGGCTTTGCACACAGAGTGTCAGCCAGGAAGTCTGAATTCACCAAGCACCACTGGGACATAAGATAACTATTAGAGTGGCCAAGGAGACCTCCACAGCAAAGGTGTTAGGGGAGAGGGGGAGAATGGGACAGTCCTCCATATTCCTATTCAGGAGGGGACCTGCAAATCAGAATCTAATCATAAGAGCCTTGAACAAATGTTATGATTTCTCAGGAAACAGTTGGGAAACTTAAATTCATTTGTATGTACAGGTGGATATGAGGTTGCTCAAGGGTCTAAGGTTAGAATCATTGGGAAATGCTATCCAAAGTACTGACTTAGGAAAATCCAAGTTCAGAATTCAAGGTGAACTTGGTTAGCCCTTCCAGTTGTAACAAAACCGCTCAAGTCTGCCTTAAAGAGCCTTACAAGCCAGCCAGTCCCTGCAGCTCCACAAACTGACCCATCCTGGGCCTTGTTCTCCACAGAA +>mm8 +-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTGATCAAACATTATAATTCCT-GGGAAAGGGTTAGGAAACTTGGATTTATTTACA--------CGAAA---GGCATGCTC-CGGATCCAAGGTTAGAA-CACTGACAAATCCAATCCAAAATATTGACTCA-AAAACTGCTTGTTTGGACCTCAGGGCAAGTCCTAGTAGGCTATTCTGTTGCAGTAAAGCTGCTCAAGTGAACCTTGAG--GCCCCACGGCAGGGCTCGTCCTGGCAGCTCTAT--ACTGACACATCCTGGATCTTGTTCCCCACAGAA + +>hg18.chr4(+):25358148-25358647 +GTAGTCAATTGTATAAAAATAATTTTATTTACTACTGTAAATAAAGTAGTGCAAAGAGTAGTTTGGACCCACAATATTGCATTACTGATTTATTCACTACCTTAGCAGCATGTAGTATACAGACATTCTGCTCTTCCTCTTCCTCTCTAacacacacacacacacacacacacacaTATCCCTGTACAGACTCACGCAGGCATGAGGGGTAGGGATGAAACTATAAGCTAGAGGCTTACTTGCTGCATATTCCGTTGCTGCCAGTCTATTCTAACGTGTAATTCATGGAGAAGACTACAGTTAAGTACTAAGAATCTTCTAAATGTAATTTCATGGATTGCAATTGAAATGTAAAAGATATCCGACAATGCCATTAAATGATTCGGAAGCACTAGGACCCTAGAAAAATTCAAGGAGAAAAATGTAAACCAATTTACAAAGCTATTGCCCTCCCTGCATTTCCAGGCACAAACAATTTATTTCAAGGTGCCTTATAACT +>mm8 +GTAGTCAACTGTAGAAAAATAATTTTATTTACTACTGTAAATAAAGTAGTGCAAAGA-TAGTTTGAACCCACAGTATTGCGTTACTGATTTATTTACTACTGTAGCAGCATACAGTGCACAGACACTCTGTTCTTTTTTTGTCC-TCTTACACAC----ACTCTCTCTCACACACACACACCTATACAGACACAGGCAGGCATAAGGGGTGGTGATGAACCTATGAACTAACAGCTTGTTTTCTGCGTATTCCATTGCTGCCAGTCTATTCTAAT-GGTGACTCATGAAGCAGACTACACTTAAACGGTAAAGATTTCCTAGATGTTATTGCATGTGTTATGATGGAAACATAAACGATACCCAATAATGTCATCAAATGATTTGGAAGCACTATGACCCTAGAAAAATCCAGGGGAAAAAATGTAAACCAATGTACAATGTTATCGCCTTCCCTGTGTGTGGAGT--------GTTTGTCTCAAGGCTCCTTCTAGCT + +>hg18.chr3(+):113535219-113535718 +TTCCAGGCTCGCTTTCTCCGGGAGAGCTCCTGCGTCTCCTCTTTGTTATGCAGCCCCTTTCTCCCTCCTAGCCCTTGCCTGGGGGAAGCCATGAAGGATCAGTTAAAGCTGAAGCTACACTTGAGAGAGCTGAAATGCTCTGTGATCATAATGCTTTGAAGGGTTAACCCCGGGTATCTAGAGAAACAGACATTTTGTTTATTCGGAACCAGCTTACAAGACAAAAAACGGAGAAGGTTTTCATATATCCCATTGGTATATGAAATCCAAATACAATGGTATTGGTATAAGAATCCAAATACAGTGAATGCCTCAAGATAATTTTTTCATGTATGGTTTGTTGGCAAGACCACATAGCCAATGATTTCACTGTCTTTCTTAACAAAGGAGAATGGTGGTCTGTGAGCTACGGTCTACTGCAAGCTAGATGCTGTTAATCTTCTTTGTAACTATCCTTCTAAAAATGAATTATTACCTCGTTTTACACATAAACAGGCGG +>mm8 +TCTCG--CTTGCTC-------------------------TCTTTCTCA----CCCCCTCTCTTGCTGCTGCTCCTTGCCT--AGGAAACCATGAAGCATCTAGCAGTACTGCAGC-------GAGCAAGCC--ACAGCTTAGTGGTCTT-------------GTTATGCCAAGGTATTTAGAGAGGCCGACATTTTGAGTCTTTGGTACT-GTTTACAAGGCAGAAAAAAGGAAGGGTGGTCATACGCCTTATT----------CTTTATACACACGGA-ATTGGTATGCGAATCTAAACGCAATTAAACCC--CAGGTACCCTTTTCATCAG------GCTGACAAGACC----GAC------TTGTGTTACCTTTCTTAACAAAGAGGAATGTGG-----------------ATCTGTCAGCTAGATGCTCTTAATGTTC-AAACA---------------AGGAATTGCTTTC-TGTTTTACAAAGAATCGGAGAG + +>hg18.chr3(+):113534107-113534606 +-----------------------agaagaagaagaaggagaagaaggagaaggagaaggGAAAAAAGAATCCTCATCATTAATGCAAGTGGAAGGAAACTCTTCACCAAAGAATTGATCACATCATGAAAGGTGAAATCATTACGGAATTGCTTAAATATATAATTTGAATCTGGatttaaaaataataaatgtaagttttttctttaaaaaaaaaaaaaaGTCCATTGGTTAAATTCAGCTTGAATCCTTTGCCACTACATCAAGAGCTAACAGGTCAACAACTGATCTCCACAACCTCCCACCTCATTTCCTTTCTCAGTCCAGGTAGCAGGAAAATGGAAAAAAAAAAATGATTTTTTTTTTCCAAACACTTTGTCAGTTTCCCCAGCGGTCACCTTTGAAAAGGGAAAAATGTCTGAAAATAGACAAAGCTGAATATAAACATCATTTAATTCCCCCCACACAGACAGCCTCCGCTCCTGTGAGGGCGTGGGGAA +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr15(+):40483770-40484269 +gcttcatcaatgaggtgatgtatgtgaagtgtctggcacagcatgggcactcaaACAGAGGTGCTTTTTCACACTTTAcaccttacaaggtacttttcacatgtgtcatcgcgatacttgcaaggttgctgagaggtagatggggttataatccctggtgttcaagaaaggaagcagaggctcaatggggttgaatgacttctctgagttcacagagctcagtaagtggcagggttggaactcacattcagactctctgactccagacttaggtttttccgcacctccacgctgAGGCCAGCCCCAGGCAGTGAGAAGCCCAAAGTCCGAAGCACAGAGTGCTGTGTGTTGGGCTCTGTGTGTTGAGGAGTCTTGTGACTGCCTTGGGGCTTTGGGCTGTAGTCAGCTGACAGTCCTTTGTGCTCTGTGGGGATGACGTAGGCCAATGGGAGGACAAATGCCCCTCTGAACTGTCTTCTGGGCAGTGACAGTCATGGTC +>mm8 +gtttaatctataagctcacacatgtgaaatgTCAGGTGTAGCATGTGCAT-CACAAGGG-----------------TA----TTTCTAGATATCCTTCATGACTGTTACATCATTTCTT-CAAACATTTGGAGAAGtggataaggttgtcatcccagcttttcactcgagaaggtggtggctcagtggggttaaatggcttccttgcactcctggag-gcaggaagtggcagGTAGGG-----AAGTTTAGAGTCTC--------------------------------------------------------------------------------------------TCGGTGTAATG----GAGGAGACTCAGGTCTGCCATGGACCTTGTGGCTGTAGTGACTTGACCC-------------------------------------AGGACAAACGCCCCACTGAGTGTCTTTC-AGGTAGTGACTCC-ATGATC + +>hg18.chr15(+):40427094-40427593 +CTGCAGTGAGTGAGGACAAAAGTCATCTGTCCAAACCAAGAAACCACCATCAGTTATACATACACACATACACAGACTTCTGGGCCCACTCACACAGACAGAAAACTTCACTCTTCAGCAGGGTTCTGGAAATAAGCATGTATATACTACACTGATAGGAAAATTTAAAATACAAAATAGGAAAAGCCACTTATAGGATGGGCAGAAAGGAATTCATCACTTAAGAGGAAAAAACAGCAAAGACAGGTATAGATAACAAACCAATGAAGGGTGGGAAGTTTCCCTAATAATTAAAAAGTGGACCATTCTTCAGCGTTAGAGCTCTTTTCCTTTTAATGCCAGGACCCCCATATTTGCCATCTCTGTGCCCCAAAATTTATTTTGCCTACAAATCCGTACTTGTAGACTGTGaattttataaaatgaaatatttttaaattCTACCTTGAAATTTTCTTATATGAATACTGCTTCCCTGAGCGTGCTGCTCTGTTACAGA +>mm8 +--------------GGCAGAAGTCATCTCCACAGACAGACAAACC---CTTTGTTCCACAAGT-CCCAT-----------TGCACCTACTTACATAAACAGAAAAATCCACTCTGTAGCAAGTCTCTAGAGTAACATGCTTGC-TATTTTATTGAC----AAGTTGAAAATAAGTCTTTAGAGGGGCCTCTAACAAGATGAGTAGAATAAAATTCATTGTGTCAGTGAAAAA-GTGGCAAAGACAGGTAGAGATAATAAG----TGGGGGGTAGGTAATTGCCCAAAT-ACCAAGAGATGGACTATTTTTAATTTTTTCAGTTCATTTTCTTTTCATCTCACAGTCCCCATGCTTGCCACTGCTCTTGCCACAGATATTCTTTGCTT--GAGTTTATATCTGTAAAGAGTGGATCTCATATCGTGAAATAC-----------ACTTGAAAAGTTGTCCATAT-AGCATGTCATTCCTGAGAGTGCTGCTGTGTTACAGA + +>hg18.chr15(+):40481381-40481880 +TGGCTTCCTCAATACCCAGTGACCCACAGAGCTCCTGGTATCAGGACCACTTGTGTTTGTAACAAGCAAAAAATACCAGGGGGGGCATTAGAGAGGCAGTGGAGCGGGCCTGGCAGAACAGGTGCCTGGGGGTCAGGCTTCCGCATGCGGGCTGCAGTTGCTGGCATTGCCTTCCGCAGGCTCCTCATCCTCATTCACATCTGAAGCATCTTCCTTTCTGTTTCTTCTCAAGGTTCCCAAAGAGGTATAGCAGCAGCAGCGGCCAGCAGTTGTGTGCAGCACTACCCAGGGGGCCCCGAGTCTGTCTGTGGCTCGTCGAGAAGCTTCCTGGTGGGGTTTGTGGGCAGGACTGTGATAGGAGAGGGCCTTGCCTGTGTTATTTCCACTGCAGAGCAGGTGCCTCAGGGCATTGCATGACCCATGACTACCACCCCCAGGATGTGCACTTTCTCCCTCGCACCAGACACTGCACGTCACACACATGCCTTTGCACACTCAC +>mm8 +TGGTTTTTCGTGTCCCCAGTGACCAACAGGGCTCCTGCTCTCAGGCTCACACATGTCTGTCACCAGT-GTAAATACCA-CAGTTGCA-------GAAGGCAGGACGGAGCTGGCCGGGTGGTAG-CAGGAGTTAGAGCCTACTCATGTGTCT----------GGCATTCCCTTCTGCAGACTCTGTACCCTCATTTACATCAGAGATG-TTCTTTTTCTATTTCGCTTCCAGGTTCCCAAAGAGGTATAGCAGTGGCAGCGGGCAGCCGTGGTGTGCAGCA-TTCCTTGGGGGTCCTAAGTCTGTCTGTGGCCCCCTAAGAAGATTCCTGGTAGGGTTGGTGATCGAGGC--TGATAGGA--------------------------------------------------------------GGGTACCACGCCCAGAATGCACGTTTTCTCCCTCCCACCAGACACCGCACATCAAACACACACCTTCCCACACTTAT + +>hg18.chr15(+):40457707-40458206 +cctgtgggtaattaatctggttgcccccaccccggggggagctatcctgccgtgagtgatcaaaagttagttttaggaccacatgagtaaacaagctctttagataaactcctctacattcctatgtatctgtgccctaagctattaagtggattcggctgccttcagccaaacactttatgcaaacctctaggccttccaagagggtttgtgtttatatcctataaattcatcttaaaatttttgccaccagcctgactgaactcccaaaagtgataacctctccttcatttttaatattagtaatttgtgttttcatttttcttgtttagcatggctaaaggtttatcaattctattgatctttccaaagaaccatttttgttttcattgactttctattgttttcttgttttttatttcattcatttctgctctgattttttattgtttcttttcttctgcttgctttaggcttaagtatctcttctatagtgtac +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr15(+):40438491-40438990 +ATTTTCTCAAATGAGGACTCTGCTGAGTAGCATTTTCCATGCAGACATTTCCAATGAGCGCTGACCCAAGAACATTCTAAAAAAGATACCAAATCTAACATTGAATAATGTTCTGATATCCTAAAATTTTAGGACTAAAAATCATGTTCTCTAAAATTCACAGAATATTTTTGTAGAATTCAGTACCTCCCGTTCACCCTAACTAGCTTTTTTGCAATATTGTTTTCCATTCATTTGATGGCCAGTAGTTGGGTGGTCTGTATAACTGCCTACTCAATAACATGTCAGCAGTTCTCAGCTTCTTTCCAGTGTTCACCTTACTCAGATACTCCCTTTTCATTTTCTGGCAACACCAGCACTTCATGGCAACAGAAATGTCCCTAGCCAGGTTCTCTCTCTACCATGCAGTCTCTCTTGCTCTCATACTCACAGTGTTTCTTCACATCTATTTTTAGTTTTCCTGGCTCAAGCATCTTCAGGCCACTGAAACACAACCCTC +>mm8 +ATTTCCTTGACTGGAAATTCTGCTGAGTGGCATTTTCTACCCA----GTTGGACTGAAAGCCGACTCCAGAACATTCTAGAAAAGATACTGGCTCTAA---------------------------------------------------------------------------------------------------------------------AATACTGTTTTCCATGTATCCAGCGGCTGCTGCTTCAGTAGCCTGCATGACTGCCTAGTCCTTTACACA---------CTTTGCTGATTTCTGGTGTTCAGCTGTCTCAGACA-----CTCTCACTTCTTGACAAGCCGAGTTCTTAATGTCAACAGAAATACCTCCAGCTAGGTCCTTC-GCGACCACTCAGTCTCTGTGGCTTTCATGATCACAACCTCACTTCATGTCTATTTTTAGTTTTCCTGGCTTAAGCTTCTACAGGCCACTGAAACACAACCCTC + +>hg18.chr1(+):120055534-120056033 +tttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccatattttcttaatccagtctatcattgttggacattttctttttgatagtcgaattcccttcaacgtctagcacagtgccttgcacatttacccactcaaaaaaaatttcgtaaggaattaataaatGAATCCTTAGGAGGAAAAGTGAAAATGAAGTTTTTCTCTCAGGATGAGGTGTATTTCTCCGTTCATTTCAGATATGCATCAGCTAGTCAGCGTAAATTGTGCTTTTTATATGCTCACCAGGTGTAGGTAAGAGCTTTGGCTGAGATGGAGAAATTCATCGCGGGAGGATAATAAAGCGGGCAGGGATTTGGCAACCTCAGAGCCGCGAGGAGGAGGCGGAGTCGCGGAGAGTTTGAGTATTTCCGTCCAATCAAAAGGAGACTGTAAGAGG +>mm8 +-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATG-GTCTTTAAGAGGAAAAGTTACTATGAGATTTAATTCCCTCGTGGCAGCGTATTTC--TGTTTATTTCCAATATAAATCAGCCTGCTGGCATAAATCGTGCGTGTTA-AAGCTCACCCGGGGCAGGTAAGGGCTTCA---CTGCTGGA-AGTGTAGTCTGTGTAGGataaaaaaaaaaaaaaaaaTGTGGGAGGCTCTGCCC------GGGGAGGCGGAGT--CAGAGAGTTTAAGCATTTCTGACCAATCAAAAGGAGACTGTTGGCGC + +>hg18.chr1(+):120063274-120063773 +AAATCAGAATACCTCCAGGTGCTCACCTGGTGTTGGCCTCAGCACTGGGGCAGTCAGCACTGAGGTGGCTTCTGTTTGATTCCTCTAAGCCCTGGGTGCCCATGTGACTTGTATACACCCAGGTCATAATCAGTTTAGCATAATGCCAGATACGTACATAGCGGGCATCCGATAAAATGAAGGAAGAAAAGTACAGGGGAGGGGAAGGGAAAGtaggcaggcttaactttgttgggcttcagtttttcctctgtaaaatggagttggaccagatgctggtgaacatttcttcaaatctcccactctgacgttctGCTTCagaacctcagacataaaaggatttggagtgtcttccaggccgcctgcatgtttctctctgctggtaggcacagcccccaagcagtgaggatgtgtgatgcataaacacctccagaggaatcgttctactattgctcttgaacaattcttccagtgtttagaagctcttaaggcttaaata +>mm8 +------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- + +>hg18.chr6(+):159106769-159107268 +CCTTTGCAAAGCTTTTATTTCATGTCTGCGGCATGGAATCCACCTGCACATGGCATCTTAGCTGTGAAGGAGAAAGCAGTGCACGAGAAGGAATGAGTGGGCGGAACCAACGGCCTCCACAAGCTGCCTTCCAGCAGCCTGCCAAGGCCATGGCAGAGAGAGACTGCAAACAAACAAACACAAGCAAACAGAGTCTCTTCACAGCTGGAGTCTGAAAGCTCATAGTGGCATGTGTGAATCTGACAAAATTAAAAGTGTGCATAGTCCATTACATGCATAAAACACTAATAATAATCCTGTTTACACGTGACTGCAGCAGGCAGGTCCAGCTCCACCACTGCCCTCCTGCCACATCACATCAAGTGCCATGGTTTAGAGGGTTTTTCATATGTAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAATCTGTATTATCACTTGTATATAAATAGTATATAG +>mm8 +GCCTTGGAGAGCTTTTATTGTGTGTATCTGGTGCGGAGT-CACCCGCACAGGACATCACAACCAAGGAGGC-----TAGTCCGCGAAAGGAAGGAAG---------------------ACAAACTG-----------------AAAAC--GGGA----ACAAGTTGCTCACAA-----------TAAAGAGCGTCCCTTCAGGGCTGGAGTCTGGATGCTCTCGGTGTCAAATAAGAAACTGACAGAAATGGAAGTGTGCAT-----TTTACGTGCACAAAAC-CCACTAACATTTTTGTACAGTGGTGATTACTGCAGTCA---TCGGTTTCCCGACTGCCCCTGTG-----TCAGATCAAGTGTCTCGG-TTACATGGTTCTTAATGTTGAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAACCCATATTATCGCTTATATATAAATACTATATAG + +>hg18.chr6(+):159106768-159107267 +GCCTTTGCAAAGCTTTTATTTCATGTCTGCGGCATGGAATCCACCTGCACATGGCATCTTAGCTGTGAAGGAGAAAGCAGTGCACGAGAAGGAATGAGTGGGCGGAACCAACGGCCTCCACAAGCTGCCTTCCAGCAGCCTGCCAAGGCCATGGCAGAGAGAGACTGCAAACAAACAAACACAAGCAAACAGAGTCTCTTCACAGCTGGAGTCTGAAAGCTCATAGTGGCATGTGTGAATCTGACAAAATTAAAAGTGTGCATAGTCCATTACATGCATAAAACACTAATAATAATCCTGTTTACACGTGACTGCAGCAGGCAGGTCCAGCTCCACCACTGCCCTCCTGCCACATCACATCAAGTGCCATGGTTTAGAGGGTTTTTCATATGTAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAATCTGTATTATCACTTGTATATAAATAGTATATA +>mm8 +GGCCTTGGAGAGCTTTTATTGTGTGTATCTGGTGCGGAGT-CACCCGCACAGGACATCACAACCAAGGAGGC-----TAGTCCGCGAAAGGAAGGAAG---------------------ACAAACTG-----------------AAAAC--GGGA----ACAAGTTGCTCACAA-----------TAAAGAGCGTCCCTTCAGGGCTGGAGTCTGGATGCTCTCGGTGTCAAATAAGAAACTGACAGAAATGGAAGTGTGCAT-----TTTACGTGCACAAAAC-CCACTAACATTTTTGTACAGTGGTGATTACTGCAGTCA---TCGGTTTCCCGACTGCCCCTGTG-----TCAGATCAAGTGTCTCGG-TTACATGGTTCTTAATGTTGAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAACCCATATTATCGCTTATATATAAATACTATATA + +>hg18.chr6(+):159106766-159107265 +GTGCCTTTGCAAAGCTTTTATTTCATGTCTGCGGCATGGAATCCACCTGCACATGGCATCTTAGCTGTGAAGGAGAAAGCAGTGCACGAGAAGGAATGAGTGGGCGGAACCAACGGCCTCCACAAGCTGCCTTCCAGCAGCCTGCCAAGGCCATGGCAGAGAGAGACTGCAAACAAACAAACACAAGCAAACAGAGTCTCTTCACAGCTGGAGTCTGAAAGCTCATAGTGGCATGTGTGAATCTGACAAAATTAAAAGTGTGCATAGTCCATTACATGCATAAAACACTAATAATAATCCTGTTTACACGTGACTGCAGCAGGCAGGTCCAGCTCCACCACTGCCCTCCTGCCACATCACATCAAGTGCCATGGTTTAGAGGGTTTTTCATATGTAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAATCTGTATTATCACTTGTATATAAATAGTATA +>mm8 +AAGGCCTTGGAGAGCTTTTATTGTGTGTATCTGGTGCGGAGT-CACCCGCACAGGACATCACAACCAAGGAGGC-----TAGTCCGCGAAAGGAAGGAAG---------------------ACAAACTG-----------------AAAAC--GGGA----ACAAGTTGCTCACAA-----------TAAAGAGCGTCCCTTCAGGGCTGGAGTCTGGATGCTCTCGGTGTCAAATAAGAAACTGACAGAAATGGAAGTGTGCAT-----TTTACGTGCACAAAAC-CCACTAACATTTTTGTACAGTGGTGATTACTGCAGTCA---TCGGTTTCCCGACTGCCCCTGTG-----TCAGATCAAGTGTCTCGG-TTACATGGTTCTTAATGTTGAATTCTTTTATTCTGTAAAAGGTAACAAAATATACAGAACAAAACTTTCCCTTTTTAAAACTAATGTTACAAACCCATATTATCGCTTATATATAAATACTATA + +>hg18.chr9(+):111041832-111042331 +ttaagcagagaggtatttattagagggtattatatggcatacacaatttccaggagcccacagataagggtttggatgccttcctgccaggaagagcacaagtagccaggacaaacacgtacctttacaggactattactgaggaaatcccactgccaccactTCTCTCTACTCAGCACCTGTGACAGGCAGGACAACCTTCACCAGAGTTGCCCCAGATGAAGAAAGGCATCAGCTGCTGTGCCTATAAGATCCACTCTTGCCAAGAGCAGCCTCATTCTAGGATGATCTTGCTCCACCCACCTAACTGAATGCTCACCTTCAGACTTCCAAAAGCCAACTGTTCTGTTACCAAGGTCATTCACAAATGAGACTTCTGCATAGCAACAAGAATCAATTTAAAAAAAATGAAGATGGAGTCAAAAAAAAAGCAAGAATAATCTTTATTCCTTGGAAACACATTTGTAAAAATGCTATCAATAAGATGAAAAGATTCAGA +>mm8 +TTAAGCAGAAGG--CTTTGATCGA----------------GGATCATCTTTAAGAAGCCACAGACAGA-----------------GCCAAGAAGAG-GTAAGCAACCACGAGAAGGTGTACCCGTCACAGGACTGTTATCAGGGAACACCCA-------GGTGTCTCTCTGCTCTGCACATGGAACAGGTACTGCAGCCTCTTCCAGAAGCGCATCGG---GAGAATCACCCCAGTCACTGTACCTATA-------------------GGAGCCTCAGTGAAGGATGGTTTTGTCCCAACCACATAACTGAAGGTTCACCTTCGGA-CACCCTGAGTCAACTGTACCATGAGTGAGATCA-----AAGGGAGGCTTCTGTGCAG----AAGAATCAAC------GCAATGAAGATGGAGTCCAAAAAAAAACAAGAATAATCTTTATTACTTGGAGACACA-TTGTAAAAATGTTAGCAGTAAGATGAAGAGACCCAGA + +>hg18.chr9(+):110974075-110974574 +GAAACCATGGAATCCTCTTATTTTACTGGTTAGAGGTGAGCTGCCAAAGGTACTGGGTTTCAAATACAGTAACAGCCAACTTGTTTGTGGTCAGACTTCCAGTGACGTCAACCTTCAGAAACTTCAACATCTGTGAACTCTGGGGGAAGCGGGGAAGAAGCAGGAAGCCCAGAGCCTCCTGGAAACACTGGCCAAAAAGCCCATGCATCCCTTCTTGGAAGCCAAGCAGATCTGACACATAGGAAATACTGGCTTTCCTGGCTTCCCCAAGAAACCTTCAGCTTTGCCCTGGAGGTTTCCATCAGCGAGCAGGAGGTGAAGAGCAGAAGCCTCAGAAAGCAGGTTAGAAGAGGAAGAGGGTGCTGGGTTGGCAAGAAGTGACAGCCCCATATTGTACGGGAACATATTTTGTATCATGTGCACAAGATAAAGAACAGCTAAAGCTGTTTTAAAAGTATAGCCGGGGGACATAGGGGTAAAAGGACCCAAACGCTACAAT +>mm8 +GC---CAC----TCCT---------CTCCTTGGGA-TGAACTGCCTGCGGTTCTGGGTTGCACATACAAGAGCAACCAGCATGTTTGTGCTCAGGTTTGCAGGGATGTCCACCCACTGAGACT------CTTGTGAGCCCAGGGAGAGGTGGGGACAAGGTAGGAGCTTGCAAGCCTCCTGAACGCAGCGGCTAGAACCTCCATGCACACCTACCTAGGAACAAATCAAGTCAGACTCGTGGGATACACAT-GTGGCCCGAAAG-CTCCGGAAACCTTCTGCTGTGTTCTGGAGGCTTCCATCTGAGAGCAAGG-GGGAGGAGTGCACACTGCAGAGAGCAGCTCAGAAGAGGAAGCAGCTGCTGGGTTGGCAGGAGGTGACAACCCTGTGTTCTATAGGAACATGGTTTGTGTCACGTGCACATGATAGAGGACAGCCAAAGCCATTTTGCTAGTA-ATCTAGGGGCTTCGTGAGTAAAAAGACCCAAAAACTCCACT + +>hg18.chr10(+):94822723-94823222 +ccttcctcttataccgtctctttatcctgccaGGGCTAAGGACCCCCTTCCCTGCTGTCCAGCTGGGGCGCCAAGCAGCAGGGCCCTCCGAATAGGCGAGCTGTGCTTGGATCTCAGAGACGGGCACCGACTGCCGAGCCCCAGACGAAGTGCCCCAGGGTCGGGGATCAGGCTTGTGCAGGGTAGCACCTGGGGACCTGAGGGACCTGGAGGCCTTCTTGTATCCTGAAGTAGGACCTTCTAAGACTTCATGAGTCCTGGCCCCCTTGCAGGGGTTGGGGAGCTGGGGATCCCAGATCTGCCTATTGCGCCCGATGCCCCGAGGCTCTCTCTTGGACTCTGGCCCTGAGTTCTTCTGCGCGATCCTTCGGAGACGTCTGGAGGCCTGCTTTATGcatctctcttggacctcagtttccccacacgtgggaggaggcagctggacgattcctgaaaggactttccCTTGCTTCCTCATCACGTGGAAGAGAGCCCACCC +>mm8 +CTCCCTGTATTC-----CTCCCCATTCTGCCTGGACTGGGGGCCCTCTTCCCGGCCGCTTGGCTGAGGTTGCAAGCCCCAGGGCTATAGGAATGGGCCGGCTTGGCGGTATTACTACAGTGGAG-GTTGACTTTGGAGCCTCTGGTACCAGGGCTTAGAGAAGGGAGTCAGGCATGTGCAAGGCTGCACCTGGGGGCCC-AGAGACCTGGAGGCTTCTTTGAACTCGAAAGCAGGATTTTCCAAGTCTTCATGCGC-TGGCTCGCCTGTGGGGCCCTGGAAAGCTAGCG-TCCACGATCCGCCAGTCATACTTGACCTCCGAGACCG---GCTAGGACCCTCGCCCTGGGATCTTCTT-GGGATCCTCCAGA----TCAGGAAGCGT---------------TTGGAATCTCATTTACTCAACCGGTGGGTCAAGTCCATTGGATGATTCTTGAACGC----------GCTTTCCAAGCCAATGGAAAAGAGCCCACGA + +>hg18.chr10(+):94823138-94823637 +ttccccacacgtgggaggaggcagctggacgattcctgaaaggactttccCTTGCTTCCTCATCACGTGGAAGAGAGCCCACCCGGCACCTGGAAATGGAAAGCCAGTGAAGGCTGCTTTGGGCCGGGGCAGCGGGTGGGACCGGGCGGGAGGGATTCCAAAGAGACCGCCGGGAAGGCTAGAGCTTGGAATTCCGGCTCCTCGGAGTCCTGGCCCTCCCCCACCGCCGCCTCGGAGCTCAGCACACCTTGGATGGGGGAGGCGGGCAGCTCCTAGCCCCGCACCCCAGGAGGCGCGCTCGGAGGGAAGCCGCCACCGCGCCGCCTCTGCCTCGGCGCGGAACAAACGGTTAAAGATTTTGGGCAGCGCCTCGCGGGGGGAGGAGCCAGGGGCCCAATCCGCAATTAAAGATGAACTTTGGGTGAACTAATTGTCTGACCAAGGTAACGTGGGCAGCAACCTGGGCCGCCTATAAAGCGGCAGCGCCGTGGGGTTTGAA +>mm8 +TACTCAACCGGTGGGTCAAGTCCATTGGATGATTCTTGAACGC----------GCTTTCCAAGCCAATGGAAAAGAGCCCACGAGGCGCCTGTGAATGGTGAGCTGG----GAAGGCTTCGGGCTCGGGCAGCTGGTTCGACCCGGCTCGAGGGACAGCAGAGAGACAGCTAGGAAACCCAGGACTCCAAATTCCCACTTCTTGGAACCCCGACTCCCCCCCCCCGCCGCCTCGGAGCTCTGCACACCTAGGACAAGGAAAGAGGTG--TTCCTAGTCCCGCACCCCAGGAGGCGCGCTCAGAGGGAAGCCGCCAGTGCGCCGCCTCTGCCTCGGCGCGGAACAAACGGTTAAAGATTTTGGGCAGCGCCTCGAGGGGGGAGGAGCCAGGGGCCCGATCCGCAATTAAAGATGAACTTTGGGTGAACTAATTGTCTGACCAAGGTAACGTGGGCAGTAACCTGGGCGGCCTATAAAGAGGGCGCGCGGCGGGGTTCGGA + +>hg18.chr10(+):29005931-29006430 +CCGCCTCCCCCGGGCTCCCACCCGAACCCTCCTCCGCCACCTGCACAGGCCGGGGCATTGTCACTCGCCCCTGGGGGTTCCAGAAAACGCAGTGCGGCCGGGGAGGACGACCACACGGACCCCCTGCGTGTTTCGGGGGGCACCCAAAAGAAGCCCCGCGCTGGGGAACGCTGACCACCCGAGGCTGAGCCGTCAGGGTCTCGGAGGCGGGTTCCCGAGCCGGTCCCGGGGCTGGGCTCCCCCGGCGCCTCGCGAAGGTCACTGACGCGCAGGCCTCCGCAAGGGGGAGCGCGGGAGACGGCAGCGCACCAGCCGGGCGCCCCAGCCGGGCGCCCCAGACGCCGGCGCCGCTCGGAGCCGCCGGGCAGGTCCCCCAGCGCTCGCGTCTGGGCCCGCCCCCCGCTGCGGGGCGGATTGACAGGAGCCCGGCGGCCAATCGGACGCCGTggggcggggcgaggcggggcggtgcaggccggCTCCCGGCGCGGGGCGCTAT +>mm8 +CTGCCCCTTCTTGACTATCACCCTACTCCTCCTCGGCCA--CGCGCGGGCGGGCGTATTGTTACATGGCCCTGGTGGTTTCGGCAACCGAAGTATGGCCGAGGATGATGACTACTGAGATCCCTTGCAGGTTTCAGGTGGGACAAAAGCGAAGCCACGTGCTGGAGGCCGCTGACCA---GAGACTGAGCAGTGAGGGTCTCGTAGCAAA--CTCCGAACCTATCTAGAAGAGGGGCT-CTGCGACGCATAT--GAGGCTGT--TCGCGCAGGCGTTCGCTAGGGGGAGTGCT-----------------------GCGGCCGTGTCCACAGTGCTACTTGCCAGCGCCAGCGGGAGCCCGGCGGCTTGTCTGCCTTAGCCCGCGTCTGGCCCCGCCCCCTGCGGCTGGGCCCTGGGGCTAGAG-GCGTCCGCCAATCGGAGAGTG-GAGGCGGGGCAGGGCGGGGCCGCGCTGGCCCACTCTGGGCGCCGGGCGCTAT + diff -r 973d6cbeea87 -r 77f8bf51b2ae tools/maf/interval_maf_to_merged_fasta.py --- a/tools/maf/interval_maf_to_merged_fasta.py Thu Aug 21 16:49:16 2008 -0400 +++ b/tools/maf/interval_maf_to_merged_fasta.py Fri Aug 22 10:39:58 2008 -0400 @@ -33,17 +33,23 @@ assert sys.version_info[:2] >= ( 2, 4 ) +def stop_err( msg ): + sys.stderr.write( msg ) + sys.exit() + def __main__(): #Parse Command Line options, args = doc_optparse.parse( __doc__ ) mincols = 0 - - if options.dbkey: primary_species = options.dbkey - else: primary_species = None + strand_col = -1 + + if options.dbkey: + primary_species = options.dbkey + else: + primary_species = None if primary_species in [None, "?", "None"]: - print >>sys.stderr, "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file." - sys.exit() + stop_err( "You must specify a proper build in order to extract alignments. You can specify your genome build by clicking on the pencil icon associated with your interval file." ) include_primary = True if options.species: @@ -52,43 +58,40 @@ secondary_species = None species = None else: - try: secondary_species.remove( primary_species ) - except: include_primary = False + try: + secondary_species.remove( primary_species ) + except: + include_primary = False species = [primary_species] + secondary_species - if options.interval_file: interval_file = options.interval_file + if options.interval_file: + interval_file = options.interval_file else: - print >>sys.stderr, "Input interval file has not been specified." - sys.exit() + stop_err( "Input interval file has not been specified." ) - if options.output_file: output_file = options.output_file + if options.output_file: + output_file = options.output_file else: - print >>sys.stderr, "Output file has not been specified." - sys.exit() + stop_err( "Output file has not been specified." ) if not options.geneBED: if options.chromCol: chr_col = int( options.chromCol ) - 1 else: - print >>sys.stderr, "Chromosome column not set, click the pencil icon in the history item to set the metadata attributes." - sys.exit() + stop_err( "Chromosome column not set, click the pencil icon in the history item to set the metadata attributes." ) if options.startCol: start_col = int( options.startCol ) - 1 else: - print >>sys.stderr, "Start column not set, click the pencil icon in the history item to set the metadata attributes." - sys.exit() + stop_err( "Start column not set, click the pencil icon in the history item to set the metadata attributes." ) if options.endCol: end_col = int( options.endCol ) - 1 else: - print >>sys.stderr, "End column not set, click the pencil icon in the history item to set the metadata attributes." - sys.exit() - + stop_err( "End column not set, click the pencil icon in the history item to set the metadata attributes." ) + if options.strandCol: strand_col = int( options.strandCol ) - 1 - else: - strandCol = -1 mafIndexFile = "%s/maf_index.loc" % options.mafIndexFileDir #Finish parsing command line @@ -99,21 +102,17 @@ if options.mafSourceType.lower() in ["cached"]: index = maf_utilities.maf_index_by_uid( options.mafSource, mafIndexFile ) if index is None: - print >> sys.stderr, "The MAF source specified (%s) appears to be invalid." % ( options.mafSource ) - sys.exit() + stop_err( "The MAF source specified (%s) appears to be invalid." % ( options.mafSource ) ) elif options.mafSourceType.lower() in ["user"]: #index maf for use here, need to remove index_file when finished index, index_filename = maf_utilities.build_maf_index( options.mafSource, species = [primary_species] ) if index is None: - print >> sys.stderr, "Your MAF file appears to be malformed." - sys.exit() + stop_err( "Your MAF file appears to be malformed." ) else: - print >> sys.stderr, "Invalid MAF source type specified." - sys.exit() + stop_err( "Invalid MAF source type specified." ) #open output file output = open( output_file, "w" ) - if options.geneBED: region_enumerator = maf_utilities.line_enumerator( open( interval_file, "r" ).readlines() ) diff -r 973d6cbeea87 -r 77f8bf51b2ae tools/maf/interval_maf_to_merged_fasta.xml --- a/tools/maf/interval_maf_to_merged_fasta.xml Thu Aug 21 16:49:16 2008 -0400 +++ b/tools/maf/interval_maf_to_merged_fasta.xml Fri Aug 22 10:39:58 2008 -0400 @@ -56,6 +56,13 @@ </outputs> <tests> <test> + <param name="input1" value="13.bed" dbkey="hg18" ftype="bed"/> + <param name="maf_source" value="cached"/> + <param name="maf_identifier" value="17_WAY_MULTIZ_hg18"/> + <param name="species" value="hg18,mm8"/> + <output name="out_file1" file="interval_maf_to_merged_fasta_out3.fasta" /> + </test> + <test> <param name="input1" value="1.bed" dbkey="hg17" ftype="bed"/> <param name="maf_source" value="cached"/> <param name="maf_identifier" value="8_WAY_MULTIZ_hg17"/>

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