Hi Simon,

we use slurm via drmaa. Find configurations here:

https://github.com/mpg-age-bioinformatics/galaxy-admin/tree/master/server/co... https://github.com/mpg-age-bioinformatics/galaxy-admin/tree/master/system

Best, Sven

On 15 Oct 2015, at 08:38, Björn Grüning bjoern.gruening@gmail.com wrote:

Hi Simon,

the Galaxy Docker Image is using Slurm you can look at it here:

https://github.com/bgruening/docker-galaxy-stable

Hope this helps, Bjoern

Am 15.10.2015 um 06:38 schrieb Simon Gladman:

...

Hi there all,

Has anyone had success setting up job_conf.xml for slurm based clusters? I am having trouble getting the GALAXY_SLOTS env var set for any jobs. I've tried looking at destinations in the job_conf.xml but can't get SLURM_NTASKS to be set correctly so the slurm run script can translate that into GALAXY_SLOTS..

Does anyone have a toy example of a job_conf.xml for slurm that they wouldn't mind sharing?

Cheers,

Simon.

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