*Galaxy October 5, 2012 Distribution & News Brief* /http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05/

/* Highlights:* http://wiki.g2.bx.psu.edu/News

/

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*BWA http://bio-bwa.sourceforge.net/* tool wrappers /migrated http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#BWA_Migration_to_Tool_Shed/ to the *Galaxy Main Tool Shed http://toolshed.g2.bx.psu.edu/*.

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*Tool Factory* paper has been /E Published http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Galaxy_Tool_Factory_Paper_E_Published/ in PubMed http://www.ncbi.nlm.nih.gov/pubmed at *PMID: 23024011 http://www.ncbi.nlm.nih.gov/pubmed/23024011*.

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The *Tool Shed Wiki http://wiki.g2.bx.psu.edu/Tool%20Shed* wiki has been re-written with a new, cleaner presentation. And check out all the /new features http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Tool_Shed/!

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Accessible *tool versions* in the UI and *new exit code features* enable /clearer experimental tracking and ease reproducibility http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Tools/.

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Release also includes *Visualization http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Visualization_framework* updates, a new admin tool for /PostgreSQL http://www.postgresql.org/ *Dataset cleanup http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Dataset_Cleanup*, and improvements in *API http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#AP* , *Workflow http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Workflows*, and *Security http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_10_05#Security_Fixes* components.

http://getgalaxy.org http://bitbucket.org/galaxy/galaxy-dist

* new: * $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist * upgrade:* $ hg pull -u -r b5bda7a5c345

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* Thanks for using Galaxy!*

Jennifer Jackson & Galaxy Team

http://galaxyproject.org