galaxy-announce January 2012

galaxy-announce@lists.galaxyproject.org

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4 discussions

February 2012 Galaxy Update
by Dave Clements 31 Jan '12

31 Jan '12

Hello all, The inaugural edition <http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02> of *Galaxy Update <http://wiki.g2.bx.psu.edu/GalaxyUpdates>* is now available. *Galaxy Update <http://wiki.g2.bx.psu.edu/GalaxyUpdates>* is a (mostly) monthly summary of what is going on in the Galaxy community. *Galaxy Updates* will complement the *Galaxy Development News Briefs<http://wiki.g2.bx.psu.edu/DevNewsBriefs> * which accompany new Galaxy releases and focus on Galaxy code updates. *Highlights:* - New Papers <http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02#New_Papers> - New Public Server: MGTAXA<http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02#New_Public_Server:_MGTAXA> - Open Positions<http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02#Who.27s_Hiring> - Upcoming Events and Deadlines<http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02#Upcoming_Events_and_Deadlin…> - GCC2012 Sponsors<http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02#GCC2012_Sponsors> - New Distributions<http://wiki.g2.bx.psu.edu/GalaxyUpdates/2012_02#New_Distributions> If you have anything you would like to see in the March *Galaxy Update*, please let me know. Dave Clements Link: http://galaxyproject.org/wiki/GalaxyUpdates/2012_02 -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://galaxyproject.org/wiki/

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January 27, 2012 Galaxy Distribution & News Brief
by Jennifer Jackson 27 Jan '12

27 Jan '12

January 27, 2012 Galaxy Distribution & News Brief Complete News Brief * http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_01_27 Highlights: * Important metadata and Python 2.5 support corrections * SAMtools upgraded for version 0.1.18. Mpileup added. * Dynamic filtering, easy color options, and quicker indexing enhance Trackster * Set up your Galaxy instance to run cluster jobs as the real user, not the Galaxy owner * Improvements to metadata handling and searching in the Tool Shed * Improved solutions for schema access, jobs management, & workflow imports and inputs. * New datatypes (Eland, XML), multiple tool enhancements, and bug fixes. Get Galaxy! * http://getgalaxy.org new: % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist upgrade: % hg pull -u -r 26920e20157f Read the release announcement and see the prior release history * http://wiki.g2.bx.psu.edu/DevNewsBriefs/ Need help with a local instance? Search with our custom google tools! * http://wiki.g2.bx.psu.edu/Mailing%20Lists#Searching And consider subscribing to the galaxy-dev mailing list! * http://wiki.g2.bx.psu.edu/Mailing%20Lists#Subscribing_and_Unsubscribing -- Jennifer Jackson Galaxy Team http://usegalaxy.org http://galaxyproject.org http://galaxyproject.org/wiki/Support

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January 20, 2012 Galaxy Development News Brief
by Jennifer Jackson 20 Jan '12

20 Jan '12

January 20, 2012 Galaxy Development News Brief Highlights: * New Object Store data integration layer introduced * RNA-seq updates: TopHat to 1.4.0 and Cufflinks, CuffDiff, CuffCompare to 1.3.0. * Tool Shed installation features and community tool additions * Trackster performance upgrades and new drag & drop composite track creation Mercurial pull: hg pull -u -r 63bc46cc73b7 Complete News Brief http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_01_20 Release history http://wiki.g2.bx.psu.edu/DevNewsBriefs/ Install/Administration Help http://getgalaxy.org Support http://galaxyproject.org/wiki/Support Thanks for using Galaxy!

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Galaxy @ PAG 2012
by Dave Clements 06 Jan '12

06 Jan '12

Hello all, Plant and Animal Genome XX (PAG2012) starts in San Diego on January 14. If you are attending PAG then you will have (at least) a half-dozen opportunities to learn more about Galaxy and how it is being used to support research. There will be workshops introducing Galaxy, and on deploying Galaxy in the cloud, and talks and posters on using Galaxy and several local Galaxy deployments. See the Galaxy @ PAG2012 page (http://wiki.g2.bx.psu.edu/Events/PAG2012) and the conference website (http://www.intlpag.org/) for more information. Dannon Baker and Dave Clements from the Galaxy Team ( http://wiki.g2.bx.psu.edu/Galaxy%20Team) will also be there throughout the meeting. Please feel free to ask us questions, or just introduce yourself. Hope to see you in San Diego, Dave Clements and Dannon Baker -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://galaxyproject.org/wiki/

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galaxy-announce January 2012