galaxy-announce February 2019

galaxy-announce@lists.galaxyproject.org

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by Dave Clements

We are pleased to announce the *release of Galaxy 19.01 <https://docs.galaxyproject.org/en/release_19.01/releases/19.01_announce.html>*. A few release highlights are: <https://galaxyproject.org/news/2019-1-galaxy-release/#revised-ui-style> Revised UI Style The Galaxy stylesheet has been substantially reworked resulting in the largest visual refresh to Galaxy in years. <https://galaxyproject.org/news/2019-1-galaxy-release/#more-colorful-tags> More Colorful Tags Use consistently hashed randomized colors for history dataset name tags to increase visual distinction between tags, making it easier to track data flow in complex histories. Thanks to @erasche <https://github.com/erasche>. <https://galaxyproject.org/news/2019-1-galaxy-release/#extensive-workflow-...> Extensive Workflow Enhancements (continued) Galaxy 18.09 featured a bunch of important and diverse fixes and enhancements to workflows on both the frontend and backend. That progress continues in release 19.01. The workflow editor now features explicit step parameter nodes for non-file data (integers, strings, booleans, etc) and the ability to connect these to all tool inputs - not just files. The YAML-based Galaxy Format 2 workflow language is now included in Galaxy as a beta option and allows import and export of human readable workflows as well as extensions to allow Galaxy to serve as a file editor for such workflows. The workflow editor features more helpful labels on inputs and outputs and important fixes including logic for connecting collections and dealing with missing tools. The workflow run form now deals with default values more correctly. <https://galaxyproject.org/news/2019-1-galaxy-release/#enhanced-support-fo...> Enhanced Support for Singularity Singularity <https://singularity.lbl.gov/> container support in Galaxy has been brought to parity with Docker container support. Specifically, Galaxy can now be configured to fetch Biocontainers <https://biocontainers.pro/> automatically for enabled job destinations. Moreover, explicitly annotated Docker containers (either in tools or job destinations) can be used with Singularity. Thanks to @mvdbeek <https://github.com/mvdbeek> Please see the full release notes <https://docs.galaxyproject.org/en/release_19.01/releases/19.01_announce.html> for more information, including how to upgrade today! *Thanks for using Galaxy!* -- https://galaxyproject.org/ https://usegalaxy.org/

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February 2019 Galaxy News: VOTE RIGHT NOW, and other stuff too.

by Dave Clements

Hello all, The *February 2019 Galactic News* <https://galaxyproject.org/news/2019-02-galaxy-update/> is here! - Event News <https://galaxyproject.org/news/2019-02-galaxy-update/#event-news> - *Voting on GCC2019 training topics open through February 4th! <https://galaxyproject.org/news/2019-02-galaxy-update/#gcc2019-training-to...>* . - *ELIXIR Galaxy Community Workshop <https://galaxyproject.org/news/2019-02-galaxy-update/#elixir-galaxy-commu...>* pre-registration is open! - GalaxyAdmins needs your topic suggestions <https://galaxyproject.org/news/2019-02-galaxy-update/#galaxyadmins-needs-...> . - 160 new publications <https://galaxyproject.org/news/2019-02-galaxy-update/#publications>, great resources lead to great insight. - Some most excellent Galaxy Platform News <https://galaxyproject.org/news/2019-02-galaxy-update/#galaxy-platforms-news>, including proteo-transcriptomics, RNA analyis tools, Genome Browsers, and more! - The Tutorial of the Month is ... Genome annotation with Prokka <https://galaxyproject.org/news/2019-02-galaxy-update/#new-galactic-blog-p...> ! - At least 23 Open positions <https://galaxyproject.org/news/2019-02-galaxy-update/#whos-hiring> in 6 countries on 2 continents. - Doc, Hub, and Training Updates <https://galaxyproject.org/news/2019-02-galaxy-update/#doc-hub-and-trainin...>, including *GO enrichment analysis* and *Age prediction using machine learning*. - ToolShed contributions <https://galaxyproject.org/news/2019-02-galaxy-update/#toolshed-contributions> . - New releases <https://galaxyproject.org/news/2019-02-galaxy-update/#releases> of galaxy-lib and Planemo. - And a bunch of other news <https://galaxyproject.org/news/2019-02-galaxy-update/#other-news> too. If you have anything to add to next month's newsletter, then please send it to outreach(a)galaxyproject.org. Thanks, Dave C on behalf of, well, everyone -- https://galaxyproject.org/ https://usegalaxy.org/

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galaxy-announce February 2019