galaxy-announce August 2014

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September 2014 Galaxy News
by Dave Clements 29 Aug '14

29 Aug '14

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Galaxy Events in Europe This Fall - Lots of them.
by Dave Clements 26 Aug '14

26 Aug '14

Hello all, There are several Galaxy related events in Europe this fall. These events are a great way to meet other Galaxy users and developers and learn and share best practices. Events start with ECCB and then wander the continent ending in Italy in November. If you are interested in learning more about Galaxy and/or the community, then please give these a look. Date Topic/Event Venue/Location Contact September 6-10 At least one tutorial, a panel of European Public Galaxy Instances, and 5 posters <https://wiki.galaxyproject.org/Events/ECCB2014> *European Conference on Computational Biology (ECCB'14) <https://wiki.galaxyproject.org/Events/ECCB2014>*, Strasbourg, France Presenters <https://wiki.galaxyproject.org/Events/ECCB2014> September 11 *Tools integration on Galaxy <http://go4bioinformatics.genouest.org/integration-doutils-dans-la-plateform…>* This event is now full. Galaxy User Group Grand Ouest <https://www.e-biogenouest.org/groups/guggo>, Rennes, France Cyril Monjeaud <https://www.e-biogenouest.org/members/1005>, Yvan Le Bras <https://www.e-biogenouest.org/members/1003> September 15 *Fourth GUGGO meeting <http://www.biogenouest.org/agenda/evenement/groupe-de-travail-des-utilisate…>* Galaxy User Group Grand Ouest <https://www.e-biogenouest.org/groups/guggo>, Rennes, France Cyril Monjeaud <https://www.e-biogenouest.org/members/1005>, Yvan Le Bras <https://www.e-biogenouest.org/members/1003> September 23-25 *Analisi dati Next Generation Sequencing con Galaxy <http://www.bioinformatica.crs4.it/next_generation_sequencing_course_with_ga…>* Cagliari, Italy CRS4 <ngs-courses(a)crs4.it> September 24 *Introduction to Galaxy - Data Manipulation and Visualisation <http://training.csx.cam.ac.uk/event/1222231>* University of Cambridge, United Kingdom Anne Pajon, Jing Su September 25 *RADseq analysis using STACKS on Galaxy <http://go4bioinformatics.genouest.org/analyse-de-donnees-de-type-rad-par-le…>* Galaxy User Group Grand Ouest <https://www.e-biogenouest.org/groups/guggo>, Rennes, France Yvan Le Bras <https://www.e-biogenouest.org/members/1003>, Cyril Monjeaud <https://www.e-biogenouest.org/members/1005> September 30 - October 2 *RNA-Seq & ChIP-Seq analysis course using Galaxy <http://www.fc3bio.fr/Analyse-des-donnees-RNA-seq-et-ChIP-seq-sequencage-hau…>* PRABI <http://www.prabi.fr/>, Lyon, France Navratil V <navratil(a)prabi.fr>., Oger C. <oger(a)prabi.fr>, Veber P. <veber(a)prabi.fr>, Deschamps C. <deschamps(a)prabi.fr>, Perriere G. <perriere(a)prabi.fr> September 30 - October 2 Galaxy Training and Demo Day <https://wiki.galaxyproject.org/Events/Switzerland2014/trainingday> Bern (Switzerland) Hans-Rudolf Hotz <https://wiki.galaxyproject.org/HansrudolfHotz> and Bjoern Gruening <https://wiki.galaxyproject.org/BjoernGruening> *(second Swiss) Galaxy Workshop <https://wiki.galaxyproject.org/Events/Switzerland2014>* SyBIT Tech Day, Bern (Switzerland) *German Galaxy Developers Day <https://wiki.galaxyproject.org/Events/Germany2014>* Freiburg (Germany) November 18-20 *Analisi dati Next Generation Sequencing con Galaxy <http://www.bioinformatica.crs4.it/training>* Cagliari, Italy CRS4 <ngs-courses(a)crs4.it> Europe does not have a monopoly on events in the coming months. There are also events in Australia and North America, See the Galaxy Events Page <https://wiki.galaxyproject.org/Events> for a complete list. Cheers / Au revoir / Ciao / Auf Wiedersehen, Dave C -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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August 11, 2014 Galaxy Distribution
by Jennifer Jackson 15 Aug '14

15 Aug '14

August 11, 2014 Galaxy Distribution <http://wiki.galaxyproject.org/News/2014_08_11_Galaxy_Distribution> / <https://www.docker.com/>/ _Complete News Brief <http://wiki.galaxyproject.org/DevNewsBriefs/2014_08_11>___ /Highlights:/// .Security alert <http://tinyurl.com/nhgmbc5>from July 31st, upgrade now .Citations <http://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Ccitations.3E…>: DOIs, bibtex, and much much more . Docker, docker,DOCKER <http://wiki.galaxyproject.org/Admin/Tools/Docker>. You voted, we've/got it/, with a little help from our friends (you!) . Significant Workflow, API, Job, Tool Shed, and Dataset management updates . Fixes, tunings, plus just a drop of ? Gossip *getgalaxy.org <http://wiki.galaxyproject.org/Admin/Get%20Galaxy>* *galaxy-dist.readthedocs.org <http://galaxy-dist.readthedocs.org/>* *bitbucket.org/galaxy/galaxy-dist <http://bitbucket.org/galaxy/galaxy-dist>* *new*: $ hg clone https://bitbucket.org/galaxy/galaxy-dist#stable *upgrade*: $ hg pull $ hg update latest_2014.06.02 /Thanks for using Galaxy!/ The Galaxy Team <https://wiki.galaxyproject.org/GalaxyTeam>

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Announcing the UK Galaxy Community
by Dave Clements 14 Aug '14

14 Aug '14

Dear UK Galaxy-devs, We're delighted to announce the launch of the UK Galaxy Community. Please visit the site and have a look around: http://galaxy-community.org.uk/ The aims of Galaxy-UK are: - To bring the Galaxy community in the United Kingdom closer together - Identify and address the needs of the community - Encourage interaction and collaboration. Galaxy-UK is also an information hub for events such as: - UK based Galaxy training courses - UK based talks involving Galaxy - Information on the location of UK Galaxy servers - Anything else that might be pertinent to bring the UK Galaxy users/admins together as a community We will be organising both online meetings and physical meetings, so keep an eye on the site for these events. Best wishes, The Galaxy-UK Team. -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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August 2014 Galaxy Newsletter
by Dave Clements 02 Aug '14

02 Aug '14

Hello all, The August 2014 Galaxy Update Newsletter <https://wiki.galaxyproject.org/GalaxyUpdates/2014_08> is out. Here's a preview of what's inside: - GCC2015 will be held in Norwich, United Kingdom, 6-8 July 2015 <https://wiki.galaxyproject.org/GalaxyUpdates/2014_08#GCC2015:_Norwich.2C_Un…> - GCC2014 was a tremendous success <https://wiki.galaxyproject.org/GalaxyUpdates/2014_08#GCC2014_Report>. Watch the talks, review the slides, posters, and BoF writeups. - ISMB and BOSC 2014 slides, posters and videos <https://wiki.galaxyproject.org/GalaxyUpdates/2014_08#Galaxy_.40_ISMB_and_BO…> too. - 53 new papers <https://wiki.galaxyproject.org/GalaxyUpdates/2014_08#New_Papers> - One new public server (IM-PET) <https://wiki.galaxyproject.org/GalaxyUpdates/2014_08#New_Public_Servers> - Who's hiring? <https://wiki.galaxyproject.org/GalaxyUpdates/2014_08#Who.27s_Hiring> It turns out that lots of places are. Happy August, Dave Clements and the Galaxy Team <https://wiki.galaxyproject.org/GalaxyTeam> -- http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ https://wiki.galaxyproject.org/

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galaxy-announce August 2014