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Galaxy Newsletter: Unveiling New Features, Events, and More!
by Natalie Whitaker-Allen 24 Jul '24

24 Jul '24

View this email in your browser<https://mailchi.mp/899dde5e65ee/explore-galaxy-the-latest-newsletter-awaits…> [https://mcusercontent.com/099b2f5f23bf0134dceb27c07/images/e7cd8365-a8b8-2f…]<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> July 2024 Hello Galaxy Community! Welcome to the latest Galaxy Project Newsletter! We’re excited to share fresh updates from the Galaxy community. This month, explore highlights from GCC2024, the 2024 Galaxy Community Update Paper, and key features from Galaxy Release 24.1. Plus, don’t miss details on the upcoming Galaxy Training Academy 2024—a global, week-long online event with tailored tracks and expert guidance. We’re also calling for trainers! Thank you for tuning in and for being a part of Galaxy! View the full newsletter on the Galaxy Hub<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Newsletter Highlights GCC2024 and Looking Ahead to GCC2025 [https://mcusercontent.com/099b2f5f23bf0134dceb27c07/images/7c896c1d-141d-2b…] GCC2024 in Brno was a success, uniting researchers, developers, and Galaxy enthusiasts. The conference featured keynotes, presentations, training sessions, and social events, fostering collaboration and innovation. The GCC2024 meeting report, crafted with attending students, is now available and includes detailed summaries. Access the full report below. Finally, mark your calendars! GCC2025 will be in New York. Stay tuned for more details. GCC2024 Meeting Report<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> 2024 Galaxy Community Update Paper We’re excited to share the 2024 Galaxy Community Update Paper, highlighting the latest advancements and future directions of the Galaxy platform. This paper covers improvements in tool accessibility, new features, and community engagement. Read the full paper here to explore how Galaxy continues to support and drive research innovation. [https://mcusercontent.com/099b2f5f23bf0134dceb27c07/images/69322ce1-957c-c3…] Full Paper<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> [https://mcusercontent.com/099b2f5f23bf0134dceb27c07/images/58e4379a-9135-51…] Galaxy 24.1 Release The latest Galaxy release, 24.1, has exciting new features and improvements designed to enhance user experience and streamline workflows. Be sure to check out the User Release Notes for a full recap of the latest updates and additions on Galaxy! Read the User Release Notes<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> [https://mcusercontent.com/099b2f5f23bf0134dceb27c07/images/efcaa1b5-5bf8-42…] Galaxy Training Academy 2024 Join us for the Galaxy Training Academy 2024, a week-long global online event from October 7th to 11th, 2024. This free event offers flexible, self-paced learning across various tracks, including Introduction to Galaxy, Proteomics, BY-COVID, Transcriptomics, and more. Get ready to ngage with experts and enhance your skills from home! We’re also seeking trainers to help make this event a success. If you’re interested in contributing, please see below for more information. Stay tuned for details and registration! Call for Trainers<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Galaxy in Research Explore some of the latest in Galaxy-driven research! Galaxy in Research: Unlocking genetic secrets of Lake Baikal’s endemic sponges Explore the depths of Lake Baikal and discover how cutting-edge genetic research in Galaxy is unraveling the complex relationships between its unique sponge species. Read the full paper →<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Galaxy in Research: Decoding chromatin interactions with asteRIa Find out how Galaxy helps researchers unlock the mysteries of gene expression regulation through chromatin studies. Read the full paper →<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Galaxy in Research: Molecular secrets of minnow adaptation to salinity stress Discover how advanced transcriptomic analyses in Galaxy reveal the intricate molecular adaptations of minnows to freshwater salinization. Read the full paper →<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Galaxy in Research: Investigating Food Safety Threats Learn how Galaxy can be used to detect and analyze drug-resistant bacteria threatening food safety in Egypt. Read the full paper →<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Galaxy in Research: Exploring the Hidden World of Antarctic Toxins with Galaxy Discover how Galaxy is helping to unravel the hidden world of peptide toxins in an Antarctic marine invertebrate. Read the full paper →<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Upcoming Events Save the date: don’t miss the opportunity to learn and meeting fellow Galaxy users! Get Started with Galaxy: A Beginner’s Workshop<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> 07 August 2024 Online, Global A practical introduction to bioinformatics and RNA-seq using Galaxy<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> 10–13 September 2024 Online, Global Gateways 2024<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> 08–10 October 2024 Bozeman, MT, USA EOSC Symposium 2024<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> 21–23 October 2024 Berlin, Germany CSHL Biological Data Science<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> 13–16 November 2024 Cold Spring Harbor, NY Stay up-to-date on Galaxy Events<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Thank you for being a part of Galaxy! Get more timely information by following us on Mastodon<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>, Bluesky<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>, and LinkedIn<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>. [https://mcusercontent.com/099b2f5f23bf0134dceb27c07/images/e7cd8365-a8b8-2f…] This email was sent to nwhitak5(a)jh.edu<mailto:nwhitak5@jh.edu> why did I get this?<https://galaxyproject.us22.list-manage.com/about?u=099b2f5f23bf0134dceb27c0…> unsubscribe from this list<https://galaxyproject.us22.list-manage.com/unsubscribe?u=099b2f5f23bf0134dc…> update subscription preferences<https://galaxyproject.us22.list-manage.com/profile?u=099b2f5f23bf0134dceb27…> Johns Hopkins University · 3400 N Charles St · Baltimore, MD 21218-2608 · USA

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Exciting News: Galaxy 24.1 Release is Here!
by Natalie Whitaker-Allen 20 Jun '24

20 Jun '24

Dear Galaxy Community, We are thrilled to announce the release of Galaxy 24.1! This update brings a host of new features and enhancements designed to improve your workflow experience and boost productivity. Here are a few highlights: * Invocation Graph View:<https://www.youtube.com/watch?v=TlDnoZxWh5E> Visualize workflow runs with a new graph view in the workflow invocation summary. * Undo/Redo in Workflow Editor:<https://www.youtube.com/watch?v=G_X7nJ73Fos> Easily undo and redo changes in the workflow editor, giving you better control over modifications. * Multi-Item Selection in Workflow Editor: Shift-select and box selection tools make managing multiple workflow elements easier. * All-vs-All Collection Analysis: Enhanced dataset mapping with new all-vs-all collection analysis patterns. * File Source Plugins Pagination: Improved navigation with server-side pagination, searching, and sorting. * Zenodo Integration: New Zenodo file source plugin simplifies integration with Invenio and Zenodo. * DOIs for Archived Histories: Display of Document Object Identifiers (DOI) for archived histories. * Activity Bar Enabled by Default: Quick access to essential features with the activity bar now enabled by default. For a detailed look at all the new features, please check out the User Release Notes<https://docs.galaxyproject.org/en/master/releases/24.1_announce_user.html>. We hope you enjoy the new features in Galaxy 24.1, and we look forward to your feedback! Thank you for using Galaxy! The Galaxy Team<https://galaxyproject.org/galaxy-team/>

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Join GCC2024 Virtually + BoF Session Reminder
by Natalie Whitaker-Allen 16 May '24

16 May '24

[logo]<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> GCC2024 Reminders Virtual Attendance Can't make it to Brno? No problem! You can watch the conference talks virtually from the main room. While training sessions, BoFs, and posters/demos won't be streamed, you'll have access to a conference Slack channel for interaction with speakers and other participants. Virtual attendance is a budget-friendly way to stay connected with the Galaxy community! Register Here<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Birds of a Feather Sessions Don’t forget to register your BoF sessions! Bird of a Feather (BoF) sessions offer a unique opportunity to discuss topics of special interest. If you have a topic you'd like to explore with others, submit your proposal using the form below. Sessions can be structured presentations, agenda-driven events, or open discussions. BoF sessions are scheduled for the end of each main conference day, lasting 1.5 hours each. Submit your topics by June 15, 2024! BoF Registration<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Thank you for being a part of Galaxy! Get more timely information by following us on Mastodon<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>, Bluesky<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>, and LinkedIn<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>! View email in browser<https://mailchi.mp/423d61f51b89/gcc2024-deadline-reminder-scholarship-annou…> Johns Hopkins University · 3400 N Charles St · Baltimore, MD 21218-2608 · USA update your preferences<https://galaxyproject.us22.list-manage.com/profile?u=099b2f5f23bf0134dceb27…> or unsubscribe<https://galaxyproject.us22.list-manage.com/unsubscribe?u=099b2f5f23bf0134dc…>

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GCC2024 Deadlines Approaching!
by Natalie Whitaker-Allen 01 May '24

01 May '24

[logo]<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> GCC2024 Announcements Deadlines Approaching Greetings Galaxy community! We want to remind you that important deadlines for GCC2024 are quickly approaching. * Abstract submissions for posters and demos are due by May 15th, 2024 * Regular registration closes May 26th, 2024 Don't miss out on this opportunity to showcase your work and connect with the Galaxy community. Submit your abstracts and register for GCC2024 today! Submit Abstracts<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Register Here<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Thank you for being a part of Galaxy! Get more timely information by following us on Mastodon<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>, Bluesky<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>, and LinkedIn<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>! View email in browser<https://mailchi.mp/b9892208b864/gcc2024-deadlines-approaching?e=95701da9a4> Johns Hopkins University · 3400 N Charles St · Baltimore, MD 21218-2608 · USA update your preferences<https://galaxyproject.us22.list-manage.com/profile?u=099b2f5f23bf0134dceb27…> or unsubscribe<https://galaxyproject.us22.list-manage.com/unsubscribe?u=099b2f5f23bf0134dc…>

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Final call: GCC2024 talk abstracts due today!
by Natalie Whitaker-Allen 15 Apr '24

15 Apr '24

[logo]<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> GCC2024 Announcements Abstracts Due Today! Today, April 15th, 2024, is the final day to submit your abstracts for talks at GCC2024. We look forward to learning about the exciting research and projects you have been working on with Galaxy. Please ensure your abstracts are submitted through the conference website by the end of the day, today! Submit your Abstract<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Thank you for being a part of Galaxy! Get more timely information by following us on Mastodon<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>, Bluesky<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>, and LinkedIn<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>! View email in browser<https://mailchi.mp/4fedf132a2eb/final-call-gcc2024-talk-abstracts-due-today…> Johns Hopkins University · 3400 N Charles St · Baltimore, MD 21218-2608 · USA update your preferences<https://galaxyproject.us22.list-manage.com/profile?u=099b2f5f23bf0134dceb27…> or unsubscribe<https://galaxyproject.us22.list-manage.com/unsubscribe?u=099b2f5f23bf0134dc…>

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🗓️Reminder: 5 days left to submit GCC2024 abstracts
by Natalie Whitaker-Allen 10 Apr '24

10 Apr '24

[logo]<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> GCC2024 Announcements Abstracts for Talks Only 5 days left to submit! This is a friendly reminder that there are only 5 days left to submit abstracts for talks at GCC2024. The deadline for abstract submission is April 15th, 2024. We welcome abstract submissions for oral presentations on a wide range of topics related to Galaxy, including methods and pipelines, new Galaxy features, and data science education with Galaxy. Don't miss this chance to be a part of GCC2024 and contribute to the vibrant Galaxy community; submit your abstract today! Submit your Abstract<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…> Thank you for being a part of Galaxy! Get more timely information by following us on Mastodon<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>, Bluesky<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>, and LinkedIn<https://galaxyproject.us22.list-manage.com/track/click?u=099b2f5f23bf0134dc…>! View email in browser<https://mailchi.mp/6f812309cd3b/reminder-5-days-left-to-submit-gcc2024-abst…> Johns Hopkins University · 3400 N Charles St · Baltimore, MD 21218-2608 · USA update your preferences<https://galaxyproject.us22.list-manage.com/profile?u=099b2f5f23bf0134dceb27…> or unsubscribe<https://galaxyproject.us22.list-manage.com/unsubscribe?u=099b2f5f23bf0134dc…>

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Invitation from Wendi Bacon: Join the Galaxy Community Board!
by Natalie Whitaker-Allen 05 Apr '24

05 Apr '24

Dear Galaxy Special Interest Groups! We are building up the Galaxy Community Board<https://galaxyproject.org/community/governance/gcb/>, which is a group of individuals representing the various communities of practice and regional communities<https://galaxyproject.org/community/sig/> across Galaxy. This board works with the Galaxy Technical Board and Executive Board to elicit global changes to support our work across Galaxy - indeed, we’ve already fed into the USA roadmap on behalf of multiple user communities coming together. Additionally, the GCB - which only meets every 3 months - provides a setting for us to exchange best practices, templates, and other helpful wisdom or resources to make running our respective groups easier. In sum, please send a representative or two to our Galaxy Community Board so we can help each other and prevent the evils of work duplication! 📪Mailing list<https://lists.galaxyproject.org/lists/sig-chairs.lists.galaxyproject.org/> 📝 Meeting notes doc<https://docs.google.com/document/d/19zv4rata-uVhFW43S8v_Fw83RVYq6jDGXy-1T8A…> ☕ Matrix Chatroom<https://matrix.to/#/#usegalaxy_commreps:matrix.org> 🗓️Galaxy Working Group GoogleCalendar<https://calendar.google.com/calendar/embed?src=f6b4dbe4aa3d7076e740e4198aa4…> Given the diversity of user base and interest across the special interest groups, we also make an effort to set clear agendas before our meetings, so only if the meeting will be useful to given SiGs do representatives show up, and you’re welcome to call a meeting topic yourself! Hope to see some of you at the next GCB meeting (May 9th!)! Wendi

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Galaxy 24.0 Release
by Natalie Whitaker-Allen 04 Apr '24

04 Apr '24

Hello Galaxy Community, We are thrilled to announce the release of Galaxy 24.0, packed with exciting new features and enhancements to improve your workflow experience. Here are some of the highlights: 1. New Workflow List and Card View: We've revamped the workflows user interface with new list and card views, along with quick access tabs for "My workflows," "Shared with me," and "Published workflows." 1. New ‘Select’ Component: A new component allows for selecting a large number of options with ease. It features a list-based layout, keyboard accessibility, and options for filtering and bulk selection. 1. Multiple Item Drag and Drop + Keyboard Navigation: You can now select multiple history items and drag them into other histories or tool forms. Keyboard navigation is also supported for easier history management. 1. Consolidated Resource Grids: Histories, visualizations, and pages are now consolidated into tab views for a more streamlined interface. 1. Move Datasets Between Storage Locations: Easily relocate datasets to new object stores using the new UI feature. The interface provides a clear visual representation of storage attributes and admin-provided details. To learn more about all that Galaxy 24.0 has to offer, please see the user release notes<https://docs.galaxyproject.org/en/master/releases/24.0_announce_user.html>. Upgrade today to take advantage of these enhancements and more! We are committed to continuously improving Galaxy to meet your needs and make your research more efficient. Your feedback is invaluable to us, so please don't hesitate to share your thoughts and suggestions. Thank you for using Galaxy! Bluesky<https://bsky.app/profile/galaxyproject.bsky.social> | Mastodon<https://mstdn.science/@galaxyproject> | LinkedIn<https://www.linkedin.com/company/galaxy-project>

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GCC2024 Updates: General Registration, Abstract Submissions, and Scholarship Reminders!
by Natalie Whitaker-Allen 07 Mar '24

07 Mar '24

Dear Galaxy Community, General registration is now open for the 2024 Galaxy Community Conference (GCC2024) in Brno, Czech Republic! Join us for this exciting event to connect with fellow community members and developers, learn about the newest and upcoming developments in Galaxy, and contribute to the vibrant Galaxy community. Key Details: Date: June 24th*29th, 2024 Location: Brno, Czech Republic Conference Website<https://galaxyproject.org/events/gcc2024/> and Registration Link<https://register.oxfordabstracts.com/event/5248?preview=true> Abstract Submission Reminder: A friendly reminder that the deadline for submitting abstracts for talks is April 15, 2024. Share your research, insights, and experiences with the community by presenting a talk at GCC2024. Submit your abstract, here<https://galaxyproject.org/events/gcc2024/abstracts/>! JXTX + GCC2024 Scholarship Application Deadline: Don't miss the opportunity to apply for the JXTX + GCC2024 Scholarship, provided by the JXTX Foundation and the Galaxy Project. The scholarship supports graduate students in genomics and data sciences to attend GCC2024. The application deadline is March 31st, 2024. For more information and to apply, please visit the JXTX Foundation website<https://jxtxfoundation.org/news/2024-2-19-gcc/>. We look forward to welcoming you to GCC2024 and to Brno, Czech Republic, for an enriching and inspiring conference experience! Thank you for using Galaxy; see you in Brno! Bluesky<https://bsky.app/profile/galaxyproject.bsky.social> | Mastodon<https://mstdn.science/@galaxyproject> | LinkedIn<https://www.linkedin.com/company/galaxy-project>

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Last Chance for Early Registration – GCC2024 Early Bird Deadline Tomorrow!
by Natalie Whitaker-Allen 29 Feb '24

29 Feb '24

Dear Galaxy Community, This is a friendly reminder that the early registration deadline for the Galaxy Community Conference 2024 (GCC2024) is tomorrow, March 1st, 2024. This is your last chance to take advantage of the early bird registration prices. After the early registration deadline, prices will increase, so we encourage you to register today to secure the best rates and join us for this exciting event. Please visit the conference website<https://galaxyproject.org/events/gcc2024/> to register and view the conference program, speakers, and workshops. Don't miss out on this opportunity to save on your registration! We look forward to welcoming you to GCC2024. Thank you for using Galaxy; see you in Brno! Bluesky<https://bsky.app/profile/galaxyproject.bsky.social> | Mastodon<https://mstdn.science/@galaxyproject> | LinkedIn<https://www.linkedin.com/groups/4907635/>

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