Vote for the Training you would like to see at GCC2017
by Dave Clements
Hello potential GCC2017 Attendees!
The 2017 Galaxy Community Conference (GCC2017)
<https://gcc2017.sciencesconf.org/> will be held 26-30 June, in
Montpellier, France. GCC2017 training <https://gcc2017.sciencesconf.org/> will
be held 27-28 June. *We need your vote to determine what to offer at
GCC2017 training.*
If there is even a remote chance that you will attend GCC2017 (it's in the
South of France; it will be summer; don't let that influence your
decision), then *please vote on which of the **34 nominated topics you
would like to see offered at GCC2017.*
*Vote Now!
<https://docs.google.com/forms/d/e/1FAIpQLSdpkLoRuCGZOO3_T6dgRwFeDxVjb_zW-...>*
27 June will be single track and focus on how to use Galaxy for research.
28 June will have multiple tracks, and offer the full spectrum of Galaxy
training.
Vote for as many topics as you like, but please note that the more topics
you vote for, the less your vote for each single topic will count.
*Voting closes on 8 February.* Once that happens the organisers will
scramble to confirm instructors and set a schedule. The training schedule
will be posted before registration opens in February.
The nominated topics this year are:
- *Using Galaxy Topic Nominations
<https://gcc2017.sciencesconf.org/resource/page/id/8#using>*
1. Galaxy 101 - A gentle introduction to Galaxy
<https://gcc2017.sciencesconf.org/resource/page/id/8#galaxy_101>
2. Galaxy at scale
<https://gcc2017.sciencesconf.org/resource/page/id/8#galaxy_at_scale>
3. Visualisation of BIG DATA in Galaxy
<https://gcc2017.sciencesconf.org/resource/page/id/8#visualisation_of_big_...>
4. GSuite HyperBrowser: integrative analysis of dataset collections
across the genome and epigenome
<https://gcc2017.sciencesconf.org/resource/page/id/8#gsuite_hyperbrowser>
5. ChIPseq analysis using DeepTools and MACS
<https://gcc2017.sciencesconf.org/resource/page/id/8#chipseq>
6. RADseq Data Analysis Through STACKS on Galaxy
<https://gcc2017.sciencesconf.org/resource/page/id/8#radseq>
7. RNAseq analysis in Galaxy
<https://gcc2017.sciencesconf.org/resource/page/id/8#rnaseq>
8. Flow Cytometry Analysis with ImmPort Galaxy
<https://gcc2017.sciencesconf.org/resource/page/id/8#flow_cytometry>
9. Metabolomics Analysis with Galaxy on W4M infrastructure
<https://gcc2017.sciencesconf.org/resource/page/id/8#metabolomics>
10. How to analyze metagenomic and amplicon data in Galaxy?
<https://gcc2017.sciencesconf.org/resource/page/id/8#metagenomics>
11. Galaxy for Proteomics
<https://gcc2017.sciencesconf.org/resource/page/id/8#proteomics>
12. Processing and Analysis of Hi-C data using HiCExplorer
<https://gcc2017.sciencesconf.org/resource/page/id/8#hic>
13. SNP analysis and GWAS using SNiPlay
<https://gcc2017.sciencesconf.org/resource/page/id/8#snp>
14. Small genome de novo assembly using Galaxy
<https://gcc2017.sciencesconf.org/resource/page/id/8#assembly>
15. Scripting Galaxy using the API and BioBlend
<https://gcc2017.sciencesconf.org/resource/page/id/8#scripting>
- *Deploying, Administering, and Extending Galaxy Topics
<https://gcc2017.sciencesconf.org/resource/page/id/8#admin>*
1. Introduction to Galaxy admin: Setting up a Galaxy instance as a
service
<https://gcc2017.sciencesconf.org/resource/page/id/8#intro_admin>
2. Advanced customisation of a Galaxy instance
<https://gcc2017.sciencesconf.org/resource/page/id/8#custom>
3. Advanced accelerated Galaxy admin
<https://gcc2017.sciencesconf.org/resource/page/id/8#aaga>
4. How to use Galaxy Ansible Playbooks
<https://gcc2017.sciencesconf.org/resource/page/id/8#ansible>
5. Testing Galaxy
<https://gcc2017.sciencesconf.org/resource/page/id/8#testing>
6. Using and deploying your application to the cloud
<https://gcc2017.sciencesconf.org/resource/page/id/8#cloud>
7. Galaxy Architecture
<https://gcc2017.sciencesconf.org/resource/page/id/8#arch>
8. Writing & Publishing Galaxy Tools
<https://gcc2017.sciencesconf.org/resource/page/id/8#tools_basic>
9. Advanced Topics in Galaxy Tool Development
<https://gcc2017.sciencesconf.org/resource/page/id/8#tools_advanced>
10. Visualisation Development in Galaxy
<https://gcc2017.sciencesconf.org/resource/page/id/8#viz_dep>
11. Adding support for new external sources
<https://gcc2017.sciencesconf.org/resource/page/id/8#data_sources>
12. Conda and Containers for Tool Dependencies - A Developers
Perspective
<https://gcc2017.sciencesconf.org/resource/page/id/8#conda_dev>
13. Conda and Containers for Tool Dependencies - A Deployers
Perspective
<https://gcc2017.sciencesconf.org/resource/page/id/8#conda_dep>
14. Introduction to Galaxy Interactive Environments
<https://gcc2017.sciencesconf.org/resource/page/id/8#ie_intro>
15. Advanced topics in Galaxy Interactive Environments
<https://gcc2017.sciencesconf.org/resource/page/id/8#ie_adv>
16. Galaxy and Tripal - coupling Galaxy to a community database
<https://gcc2017.sciencesconf.org/resource/page/id/8#tripal>
17. The Galaxy Genome Annotation project: Dockerized genome
annotation environment based on Galaxy and GMOD tools
<https://gcc2017.sciencesconf.org/resource/page/id/8#gap>
18. Using Hadoop with Galaxy
<https://gcc2017.sciencesconf.org/resource/page/id/8#hadoop>
- *Trainer Training Topics
<https://gcc2017.sciencesconf.org/resource/page/id/8#trainer_training>*
1. Galaxy for Training and Education
<https://gcc2017.sciencesconf.org/resource/page/id/8#galaxy_for_training>
Please vote
<https://docs.google.com/forms/d/e/1FAIpQLSdpkLoRuCGZOO3_T6dgRwFeDxVjb_zW-...>!
Your participation helps make Galaxy Community Conferences the successful
and community focused events that they are. And, thanks to everyone who
nominated topics and/or contributed topic descriptions.
Hope to see you in Montpellier!
Dave Clements, on behalf of the GCC2017 Organising Committee
--
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
https://wiki.galaxyproject.org/
5 years, 3 months
Re: [galaxy-announce] [galaxy-dev] Nominate the training topics you want to see at GCC2017
by Dave Clements
Hello all,
Thanks to everyone who's already nominated topics, and a reminder that
*Topic Nominations close 20 January, which is this Friday.*
You can nominate a topic now:
http://bit.ly/gcc2017trainingnom
The list of topics nominated thus far is:
https://gcc2017.sciencesconf.org/page/training
Please nominate the topics you would like to see. And, if you see a
nominated topic that you would like to provide a more detailed description
for, then please renominate that topic and include the expanded description.
Thanks,
Dave C, on Behalf of the GCC2017 Organising Committee
On Mon, Jan 9, 2017 at 1:02 AM, Olivier Inizan <olivier.inizan(a)inra.fr>
wrote:
> Hello all,
>
> Training Day topics are nominated by you, the Galaxy Community. Please
> take a minute to nominate a topic. Any topic of interest to the Galaxy
> Community can be nominated and you are encouraged to nominate more than one
> topic. If you are looking for ideas, see the topic nominated in
>
> - 2016 bit.ly/gcc2016noms,
> - 2015 bit.ly/gcc2015vote,
> - 2014 bit.ly/1s6NtMN,
> - 2013bit.ly/1i2j1gN,
> - and the Galaxy Events page (new.galaxyproject.org/events/).
>
>
> The 2017 Galaxy Community Conference (GCC2017, gcc2017.sciencesconf.org)
> will be held 26-30 in Montpellier, France.
>
> It will feature two days of training: the first day will be single track
> focused on introducing Galaxy for bioinformatics analysis; the second day
> will feature multiple tracks spanning the breadth of Galaxy usage, admin,
> deployment, and tools.
>
>
> Nominated topics will be published on the GCC2017 Training page as they
> come in (gcc2017.sciencesconf.org/).
>
> Topic Nominations close 20 January. Topics will be compiled into a uniform
> list by GCC2017 organizers, and then voted on by the Galaxy Community
> starting one week later.
>
>
> You can nominate a topic now:
> https://t.co/DkOmqELY6h
>
> Olivier Inizan,
>
> On behalf of the GCC2017 Organizing Committee
>
>
>
>
> Olivier Inizan
> ------------------------------------------------
> Merci de noter ma nouvelle adresse:
>
> olivier.inizan(a)inra.fr
>
> Unité de Recherches en Génomique-Info (UR INRA 1164),
> INRA, Centre de recherche de Versailles, bat.18
> RD10, route de Saint Cyr
> 78026 Versailles Cedex, FRANCE
>
>
> Tél: +33 1 30 83 38 25
> Fax: +33 1 30 83 38 99
> http://urgi.versailles.inra.fr [urgi.versailles.inra.fr]
> Twitter: @OlivierInizan
>
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> https://lists.galaxyproject.org/
>
> To search Galaxy mailing lists use the unified search at:
> http://galaxyproject.org/search/mailinglists/
>
--
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http://getgalaxy.org/
http://usegalaxy.org/
https://wiki.galaxyproject.org/
5 years, 4 months
Galaxy Australasia Meeting Update: Register now, Poster Abstracts, Training
by Dave Clements
Hello all,
The Galaxy Australasia Meeting <https://www.embl-abr.org.au/game2017/> will
bring together biomedical researchers, bioinformaticians, infrastructure
providers, and data producers from across Australia and Asia. GAMe 2017
will be held 3-9 February at the University of Melbourne, in Melbourne,
Australia. The schedule of events is:
3 Feb Friday: Researcher Training Day
<https://www.embl-abr.org.au/game2017/training-day/>:
4 Feb Saturday: Conference Day 1: BIO Day
<https://www.embl-abr.org.au/game2017/conference/#bio>
5 Feb Sunday: Conference Day 2: INFO Day
<https://www.embl-abr.org.au/game2017/conference/#info>
6-9 Feb Mon-Thu: Galaxy Administrator Training
<https://www.embl-abr.org.au/game2017/training-for-admin-workshop/>
You can register <https://www.embl-abr.org.au/game2017/registration/> to
attend any combination of these events. (Details on each event are below.)
*The Conference is still accepting poster submissions
<https://www.embl-abr.org.au/game2017/abstracts/>.* This is a great
opportunity to share your work with other researchers facing the challenges
of data intensive biology.
*On-time registration <https://www.embl-abr.org.au/game2017/registration/>
ends 27 January*, and registering now avoids the ~ 80% cost increase for
late registrations. (Some training sessions may sell out before then, so
you are encouraged to register sooner rather than later.)
This is a rare opportunity for the data intensive life science research
community to gather, and is the first large multi-day Galaxy event to be
offered outside of Europe and North America. You are encouraged to join
your fellow researchers in sunny and summery Melbourne this February.
Thanks,
Dave C
PS: And please help spread the word by sharing and posting the attached
announcement or this email. Follow us: #GAMe_2017, @GalaxyAustralia
----
*Researcher Training Day
<https://www.embl-abr.org.au/game2017/training-day/>, 3 February Friday*
Researcher Training Day targets life scientists working with
Next-Generation Sequencing data, in particular RNA-Seq, RAD-Seq, and
microbial genomes. Session instructors are experienced researchers and
trainers and are prominent members of both the Galaxy and Australian
training communities. If you want to learn how to do NGS analysis without
also having to become a systems admin, then this is the event for you.
*Conference Day 1: BIO Day
<https://www.embl-abr.org.au/game2017/conference/#bio>, 4 February Saturday*
*Conference Day 2: INFO Day
<https://www.embl-abr.org.au/game2017/conference/#info>, 5 February Sunday*
The two day conference is split into BIO and INFO days. Both days will
feature keynotes by prominent community members
<https://www.embl-abr.org.au/game2017/conference/#keynotespeakers> James
Taylor and Björn Grüning, as well as accepted and invited talks, posters,
panels, and birds-of-a-feather and other networking opportunities.
Speakers from Australia, Japan, India, the United States, Germany, and
Canada are on the program. If you are performing, enabling or supporting
data-intensive biology then this meeting will be time well spent.
*Galaxy Administrator Training
<https://www.embl-abr.org.au/game2017/training-for-admin-workshop/>, 6-9
February Monday-Thursday*
This 4-day workshop will be intensive and hands-on, and taught by
experienced instructors from the Genomics Virtual Lab, Galaxy Project, and
Galaxy Freiburg teams. Participants will learn how to install, configure,
customize, and extend their own Galaxy servers. Topics include tool
configuration, authentication and user management, using heterogeneous
storage and compute services, and many other topics that will enable you to
get your own Galaxy server up and running, performing well, and used by
your community. This is only the second time this workshop has been
offered.
--
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
https://wiki.galaxyproject.org/
5 years, 4 months
Nominate the training topics you want to see at GCC2017
by Olivier Inizan
Hello all,
Training Day topics are nominated by you<http://bit.ly/gcc2014tdnom>, the Galaxy Community. Please take a minute to nominate a topic. Any topic of interest to the Galaxy Community can be nominated and you are encouraged to nominate more than one topic. If you are looking for ideas, see the topic nominated in
- 2016 bit.ly/gcc2016noms<https://www.google.com/url?q=http://bit.ly/gcc2016noms&sa=D&ust=148395207...>,
- 2015 bit.ly/gcc2015vote<https://www.google.com/url?q=http://bit.ly/gcc2015vote&sa=D&ust=148395207...>,
- 2014 bit.ly/1s6NtMN<https://www.google.com/url?q=http://bit.ly/1s6NtMN&sa=D&ust=1483952075432...>,
- 2013bit.ly/1i2j1gN<https://www.google.com/url?q=http://bit.ly/1i2j1gN&sa=D&ust=1483952075432...>,
- and the Galaxy Events page (new.galaxyproject.org/events/<https://www.google.com/url?q=http://new.galaxyproject.org/events/&sa=D&us...>).
The 2017 Galaxy Community Conference (GCC2017, gcc2017.sciencesconf.org<https://www.google.com/url?q=http://gcc2017.sciencesconf.org&sa=D&ust=148...>) will be held 26-30 in Montpellier, France.
It will feature two days of training: the first day will be single track focused on introducing Galaxy for bioinformatics analysis; the second day will feature multiple tracks spanning the breadth of Galaxy usage, admin, deployment, and tools.
Nominated topics will be published on the GCC2017 Training page as they come in (gcc2017.sciencesconf.org/<https://www.google.com/url?q=http://gcc2017.sciencesconf.org/&sa=D&ust=14...>).
Topic Nominations close 20 January. Topics will be compiled into a uniform list by GCC2017 organizers, and then voted on by the Galaxy Community starting one week later.
You can nominate a topic now:
https://t.co/DkOmqELY6h
Olivier Inizan,
On behalf of the GCC2017 Organizing Committee
Olivier Inizan
------------------------------------------------
Merci de noter ma nouvelle adresse:
olivier.inizan(a)inra.fr
Unité de Recherches en Génomique-Info (UR INRA 1164),
INRA, Centre de recherche de Versailles, bat.18
RD10, route de Saint Cyr
78026 Versailles Cedex, FRANCE
Tél: +33 1 30 83 38 25
Fax: +33 1 30 83 38 99
http://urgi.versailles.inra.fr [urgi.versailles.inra.fr]
Twitter: @OlivierInizan
5 years, 4 months
January 2017 News of the Galaxy: Register now for GAMe 2017!
by Dave Clements
Hello all,
The *January Galaxy News
<https://new.galaxyproject.org/GalaxyUpdates/2017_01/>* is hot off the
press:
- *Galaxy Australasia Meeting (GAMe 2017)
<https://new.galaxyproject.org/GalaxyUpdates/2017_01/#galaxy-australasia-m...>*:
February 3-9, Melbourne, Victoria, Australia.
- GalaxyAdmins Screencasts
<https://new.galaxyproject.org/GalaxyUpdates/2017_01/#galaxyadmins-screenc...>
- Lots of other upcoming events
<https://new.galaxyproject.org/GalaxyUpdates/2017_01/#all-upcoming-events>
too
including a QIIME Contribution Fest, a significant Galaxy presence at PAG
XXV, the European Galaxy Developer Workshop. This month alone there are 6
known events on 3 continents.
- Galaxy Community Hub Update
<https://new.galaxyproject.org/GalaxyUpdates/2017_01/#galaxy-community-hub...>
- And 99 new publications
<https://new.galaxyproject.org/GalaxyUpdates/2017_01/#new-publications>,
three
open positions
<https://new.galaxyproject.org/GalaxyUpdates/2017_01/#who-s-hiring>, two
new public servers and one new service
<https://new.galaxyproject.org/GalaxyUpdates/2017_01/#public-galaxy-server...>
, new releases
<https://new.galaxyproject.org/GalaxyUpdates/2017_01/#releases>,
and new ToolShed
contributions
<https://new.galaxyproject.org/GalaxyUpdates/2017_01/#toolshed-contributions>
too.
Dave Clements and the Galaxy Team
<https://new.galaxyproject.org/GalaxyTeam/>
--
http://galaxyproject.org/
http://getgalaxy.org/
http://usegalaxy.org/
https://wiki.galaxyproject.org/
5 years, 4 months