December 2015 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] d72dd3: Client, polyfills: check for sessionStorage using ...
by GitHub 09 Dec '15

09 Dec '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d72dd3735c0dfd652fb45a117fe1942f10ff726d https://github.com/galaxyproject/galaxy/commit/d72dd3735c0dfd652fb45a117fe1… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2015-12-09 (Wed, 09 Dec 2015) Changed paths: M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/polyfills.js M static/maps/mvc/base-mvc.js.map M static/maps/polyfills.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/base-mvc.js M static/scripts/polyfills.js Log Message: ----------- Client, polyfills: check for sessionStorage using a more cross-browser (apparently) way Commit: 183c3c11b60aa5a36747dbe7b0ac069dc3bac6fc https://github.com/galaxyproject/galaxy/commit/183c3c11b60aa5a36747dbe7b0ac… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-12-09 (Wed, 09 Dec 2015) Changed paths: M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/polyfills.js M static/maps/mvc/base-mvc.js.map M static/maps/polyfills.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/base-mvc.js M static/scripts/polyfills.js Log Message: ----------- Merge pull request #1279 from carlfeberhard/fix.casper Client, polyfills: check for sessionStorage using a more cross-browse… Compare: https://github.com/galaxyproject/galaxy/compare/c39544807565...183c3c11b60a

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[galaxyproject/usegalaxy-playbook] 113af6: Slide rotation update.
by GitHub 09 Dec '15

09 Dec '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 113af63cfc376e983470b6b0881a6919380fd9e8 https://github.com/galaxyproject/usegalaxy-playbook/commit/113af63cfc376e98… Author: tnabtaf <clements(a)galaxyproject.org> Date: 2015-12-09 (Wed, 09 Dec 2015) Changed paths: A files/galaxy/common/static/welcome_img/Barcelona_2015.png A files/galaxy/common/static/welcome_img/MPI-HLR-Galaxy.png M templates/galaxy/common/static/welcome.html.j2 Log Message: ----------- Slide rotation update.

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[galaxyproject/galaxy] f0fc8d: update used galaxy/testing-base to 15.10.3
by GitHub 09 Dec '15

09 Dec '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f0fc8d6d4cc59afaacccb8a7ae036b15f5b7f681 https://github.com/galaxyproject/galaxy/commit/f0fc8d6d4cc59afaacccb8a7ae03… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-12-09 (Wed, 09 Dec 2015) Changed paths: M run_tests.sh Log Message: ----------- update used galaxy/testing-base to 15.10.3 Commit: c39544807565d4e345963d1d280deb28b85d281a https://github.com/galaxyproject/galaxy/commit/c39544807565d4e345963d1d280d… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2015-12-09 (Wed, 09 Dec 2015) Changed paths: M run_tests.sh Log Message: ----------- Merge pull request #1277 from martenson/update-docker-image-v update used galaxy/testing-base to 15.10.3 Compare: https://github.com/galaxyproject/galaxy/compare/d41ea8d315be...c39544807565

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[galaxyproject/galaxy] c3e4ae: set client_encoding for TS dockerized test db
by GitHub 09 Dec '15

09 Dec '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c3e4ae11b06d0e10f1fd5a3c2df0433b90f527b7 https://github.com/galaxyproject/galaxy/commit/c3e4ae11b06d0e10f1fd5a3c2df0… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-12-09 (Wed, 09 Dec 2015) Changed paths: M test/docker/base/run_test_wrapper.sh Log Message: ----------- set client_encoding for TS dockerized test db Commit: d41ea8d315be735ab506d2643cf2dcb67e030c9c https://github.com/galaxyproject/galaxy/commit/d41ea8d315be735ab506d2643cf2… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-12-09 (Wed, 09 Dec 2015) Changed paths: M test/docker/base/run_test_wrapper.sh Log Message: ----------- Merge pull request #1276 from martenson/fix-ts-dbconnection-tag set client_encoding for TS dockerized test db Compare: https://github.com/galaxyproject/galaxy/compare/bd1349eb9b62...d41ea8d315be

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[galaxyproject/galaxy] 379315: Fix tool shed tests for recent workflow changes.
by GitHub 09 Dec '15

09 Dec '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 37931505d4c967d70e495467fd615f9540202e4b https://github.com/galaxyproject/galaxy/commit/37931505d4c967d70e495467fd61… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-12-09 (Wed, 09 Dec 2015) Changed paths: M lib/galaxy/webapps/tool_shed/model/__init__.py M lib/tool_shed/util/workflow_util.py Log Message: ----------- Fix tool shed tests for recent workflow changes. Thanks for bug report by @nsoranzo on https://github.com/galaxyproject/galaxy/pull/1263. Commit: bd1349eb9b62dfac0b1affbd1a4ea8e1fe109c2c https://github.com/galaxyproject/galaxy/commit/bd1349eb9b62dfac0b1affbd1a4e… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2015-12-09 (Wed, 09 Dec 2015) Changed paths: M lib/galaxy/webapps/tool_shed/model/__init__.py M lib/tool_shed/util/workflow_util.py Log Message: ----------- Merge pull request #1274 from jmchilton/workflow_fix_3 Fix tool shed tests for recent workflow changes. Compare: https://github.com/galaxyproject/galaxy/compare/7dbbac31b358...bd1349eb9b62

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[galaxyproject/galaxy] a033d7: Remove: history_options and options.mako (history ...
by GitHub 08 Dec '15

08 Dec '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a033d798de1c36484a1a16d135860a3b5fb5af33 https://github.com/galaxyproject/galaxy/commit/a033d798de1c36484a1a16d13586… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2015-12-08 (Tue, 08 Dec 2015) Changed paths: M lib/galaxy/webapps/galaxy/controllers/root.py R templates/webapps/galaxy/history/options.mako Log Message: ----------- Remove: history_options and options.mako (history options as a page) Commit: 7dbbac31b3581d43445a8030e2cba990c90e1b2e https://github.com/galaxyproject/galaxy/commit/7dbbac31b3581d43445a8030e2cb… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-12-08 (Tue, 08 Dec 2015) Changed paths: M lib/galaxy/webapps/galaxy/controllers/root.py R templates/webapps/galaxy/history/options.mako Log Message: ----------- Merge pull request #1271 from carlfeberhard/jettison.history-options Remove: history_options and options.mako (history options as a page) Compare: https://github.com/galaxyproject/galaxy/compare/864472870f7e...7dbbac31b358

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[galaxyproject/galaxy] b273e3: Improve logging during package installation
by GitHub 08 Dec '15

08 Dec '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: b273e3b0c51c13f7e46ccc2977925d9247033289 https://github.com/galaxyproject/galaxy/commit/b273e3b0c51c13f7e46ccc297792… Author: Eric Rasche <rasche.eric(a)gmail.com> Date: 2015-12-08 (Tue, 08 Dec 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/install_environment.py Log Message: ----------- Improve logging during package installation Commit: 864472870f7e1af14a5807effe1fc5685f16e92f https://github.com/galaxyproject/galaxy/commit/864472870f7e1af14a5807effe1f… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-12-08 (Tue, 08 Dec 2015) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/install_environment.py Log Message: ----------- Merge pull request #1267 from erasche/install-logging Log command executed during package installation Compare: https://github.com/galaxyproject/galaxy/compare/6d16549a46a3...864472870f7e

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[galaxyproject/usegalaxy-playbook] ce0739: update Test better
by GitHub 08 Dec '15

08 Dec '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: ce0739f2eb1b5594e05c0a63a5f1d356ec703453 https://github.com/galaxyproject/usegalaxy-playbook/commit/ce0739f2eb1b5594… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-12-08 (Tue, 08 Dec 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- update Test better

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[galaxyproject/galaxy] 7f4c3f: Managers, users: properly return a boolean from ha...
by GitHub 08 Dec '15

08 Dec '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 7f4c3fcfc88914cb91e325fe95f08c90c034ef3e https://github.com/galaxyproject/galaxy/commit/7f4c3fcfc88914cb91e325fe95f0… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2015-12-08 (Tue, 08 Dec 2015) Changed paths: M lib/galaxy/managers/users.py Log Message: ----------- Managers, users: properly return a boolean from has_requests Commit: 38a9aa6a5c3b006867e16877999545e1e0e7ddea https://github.com/galaxyproject/galaxy/commit/38a9aa6a5c3b006867e168779995… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2015-12-08 (Tue, 08 Dec 2015) Changed paths: M lib/galaxy/managers/users.py M test/unit/managers/test_UserManager.py Log Message: ----------- Managers, users: update serialized key 'requests' to 'has_requests', update test Commit: 6d16549a46a330d50eccfa73684e0090a397b3c6 https://github.com/galaxyproject/galaxy/commit/6d16549a46a330d50eccfa73684e… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-12-08 (Tue, 08 Dec 2015) Changed paths: M lib/galaxy/managers/users.py M test/unit/managers/test_UserManager.py Log Message: ----------- Merge pull request #1262 from carlfeberhard/fix.js-app-mako Managers, users: properly return a boolean from has_requests Compare: https://github.com/galaxyproject/galaxy/compare/fe1c9dd2931f...6d16549a46a3

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[galaxyproject/usegalaxy-playbook] bf85b3: update Test
by GitHub 08 Dec '15

08 Dec '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: bf85b35f106bdd19c282ff68193561fc79449290 https://github.com/galaxyproject/usegalaxy-playbook/commit/bf85b35f106bdd19… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-12-08 (Tue, 08 Dec 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- update Test

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