March 2015 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] 101a05: Run bwa/bwa-mem on multi on Main
by GitHub 27 Mar '15

27 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 101a052346adbd6d6296a1d5be221a259be92a17 https://github.com/galaxyproject/usegalaxy-playbook/commit/101a052346adbd6d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-27 (Fri, 27 Mar 2015) Changed paths: M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Run bwa/bwa-mem on multi on Main

1 0

[galaxyproject/usegalaxy-playbook] b605dd: update test
by GitHub 26 Mar '15

26 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: b605dd2b021a55ac3b86255cc0fb1c47972fecf0 https://github.com/galaxyproject/usegalaxy-playbook/commit/b605dd2b021a55ac… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-03-26 (Thu, 26 Mar 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- update test

1 0

[galaxyproject/usegalaxy-playbook] 1bea40: Update test to c17a9ca15d5f18ea218157c5e0b8f2b78ee...
by GitHub 26 Mar '15

26 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1bea40226776ec3d070a5037653576d31131ace6 https://github.com/galaxyproject/usegalaxy-playbook/commit/1bea40226776ec3d… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-03-26 (Thu, 26 Mar 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update test to c17a9ca15d5f18ea218157c5e0b8f2b78eeabbd1.

1 0

[galaxyproject/usegalaxy-playbook] 398b59: Blacklight dependency build env
by GitHub 26 Mar '15

26 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 398b59e50235a31c1c85ae98d4c42af031f7876c https://github.com/galaxyproject/usegalaxy-playbook/commit/398b59e50235a31c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-26 (Thu, 26 Mar 2015) Changed paths: M stage/host_vars/tg-login2.blacklight.psc.xsede.org.yml Log Message: ----------- Blacklight dependency build env

1 0

[galaxyproject/usegalaxy-playbook] 99d50d: Update Test again
by GitHub 25 Mar '15

25 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 99d50d872542507f21d2c72259d2463759939c28 https://github.com/galaxyproject/usegalaxy-playbook/commit/99d50d872542507f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-25 (Wed, 25 Mar 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update Test again

1 0

[galaxyproject/usegalaxy-playbook] 3f623e: Mutable configs from Test
by GitHub 25 Mar '15

25 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 3f623eb9db8a1a417417e17e6c5eb61993360d06 https://github.com/galaxyproject/usegalaxy-playbook/commit/3f623eb9db8a1a41… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-25 (Wed, 25 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_data_table_conf.xml Log Message: ----------- Mutable configs from Test

1 0

[galaxyproject/usegalaxy-playbook] 061191: Temporarily force all (old) BWA jobs on Test to St...
by GitHub 25 Mar '15

25 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 061191a5fc6b212e504cfa0fcfcdbf2a8232106b https://github.com/galaxyproject/usegalaxy-playbook/commit/061191a5fc6b212e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-25 (Wed, 25 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/dynamic_rules/multi_dynamic_walltime.py Log Message: ----------- Temporarily force all (old) BWA jobs on Test to Stampede for testing resubmission. Commit: 05a1afcf3f8c9be14d3ba8927f7228ddfa3f8336 https://github.com/galaxyproject/usegalaxy-playbook/commit/05a1afcf3f8c9be1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-25 (Wed, 25 Mar 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update Test. Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/0a52744511ca...…

1 0

[galaxyproject/usegalaxy-playbook] 0a5274: Disable rodeo submission entirely as I am working ...
by GitHub 24 Mar '15

24 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 0a52744511caef154e841cf2032e751da89aba48 https://github.com/galaxyproject/usegalaxy-playbook/commit/0a52744511caef15… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-24 (Tue, 24 Mar 2015) Changed paths: M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Disable rodeo submission entirely as I am working on it.

1 0

[galaxyproject/usegalaxy-playbook] 0bc124: Fix stampede resubmit destination on Test
by GitHub 23 Mar '15

23 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 0bc1246c1b7e1990f2d762d0176c1658b9cf682a https://github.com/galaxyproject/usegalaxy-playbook/commit/0bc1246c1b7e1990… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-23 (Mon, 23 Mar 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Fix stampede resubmit destination on Test

1 0

[galaxyproject/usegalaxy-playbook] 961b01: Give bamtools 16GB.
by GitHub 20 Mar '15

20 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 961b01692cd249b3ff8079ef2496b6f601592a51 https://github.com/galaxyproject/usegalaxy-playbook/commit/961b01692cd249b3… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-20 (Fri, 20 Mar 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Give bamtools 16GB.

1 0