March 2015 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] fe344a: Enable a trinity-on-blacklight tool on Test (hidde...
by GitHub 19 Mar '15

19 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: fe344acad021a66316d37b318f221e709a34e631 https://github.com/galaxyproject/usegalaxy-playbook/commit/fe344acad021a663… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-19 (Thu, 19 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/config/tool_conf.xml M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Enable a trinity-on-blacklight tool on Test (hidden until I get it actually working).

1 0

[galaxyproject/usegalaxy-playbook] 5ed5ca: Update test to ff13b6fbe8c581df242c96de021272488f3...
by GitHub 19 Mar '15

19 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 5ed5ca21c9507a41a97db880f6bfe422abd57075 https://github.com/galaxyproject/usegalaxy-playbook/commit/5ed5ca21c9507a41… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-03-19 (Thu, 19 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml M stage/group_vars/all.yml Log Message: ----------- Update test to ff13b6fbe8c581df242c96de021272488f373f9c.

1 0

[galaxyproject/usegalaxy-playbook] 28f6b1: Update Test tool conf from upstream
by GitHub 18 Mar '15

18 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 28f6b11c4fb03ea48be5ac9a80b5559d2b6bcafa https://github.com/galaxyproject/usegalaxy-playbook/commit/28f6b11c4fb03ea4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-18 (Wed, 18 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/config/tool_conf.xml Log Message: ----------- Update Test tool conf from upstream Commit: 26037b17f99610f0d0b31ca2a19b8f6e060d54cc https://github.com/galaxyproject/usegalaxy-playbook/commit/26037b17f99610f0… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-18 (Wed, 18 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml Log Message: ----------- Test mutable configs Commit: 05d2c7fbf1952917bc9c1705830ede4258058a29 https://github.com/galaxyproject/usegalaxy-playbook/commit/05d2c7fbf1952917… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-18 (Wed, 18 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/config/nagios_tool_conf.xml M stage/group_vars/galaxyservers.yml M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Echo tool on Blacklight Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/f94527c1542c...…

1 0

[galaxyproject/usegalaxy-playbook] f94527: Minor changes for deploying Pulsar on Blacklight.
by GitHub 18 Mar '15

18 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: f94527c1542cde6de47e866372f00054679fb142 https://github.com/galaxyproject/usegalaxy-playbook/commit/f94527c1542cde6d… Author: Galaxy Community User <xcgalaxy(a)tg-login2.blacklight.psc.teragrid.org> Date: 2015-03-18 (Wed, 18 Mar 2015) Changed paths: M stage/group_vars/pulsarservers.yml M stage/host_vars/login5.stampede.tacc.utexas.edu.yml R stage/host_vars/tg-login2.blacklight.psc.xsede.org A stage/host_vars/tg-login2.blacklight.psc.xsede.org.yml Log Message: ----------- Minor changes for deploying Pulsar on Blacklight.

1 0

[galaxyproject/usegalaxy-playbook] ca1ea4: Update pulsar role to 0.3.1
by GitHub 18 Mar '15

18 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: ca1ea41c07fe506aa14736b390826b67ed8b5207 https://github.com/galaxyproject/usegalaxy-playbook/commit/ca1ea41c07fe506a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-18 (Wed, 18 Mar 2015) Changed paths: M roles/galaxyprojectdotorg.pulsar/README.md M roles/galaxyprojectdotorg.pulsar/meta/.galaxy_install_info M roles/galaxyprojectdotorg.pulsar/tasks/main.yml Log Message: ----------- Update pulsar role to 0.3.1

1 0

[galaxyproject/ansible-pulsar]
by GitHub 18 Mar '15

18 Mar '15

Branch: refs/tags/0.3.1 Home: https://github.com/galaxyproject/ansible-pulsar

1 0

[galaxyproject/ansible-pulsar] fbbbd5: Add the optional `executable` arg to the git modul...
by GitHub 18 Mar '15

18 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-pulsar Commit: fbbbd5fcde1ba606cb2ced323b4bcc87176b1f7e https://github.com/galaxyproject/ansible-pulsar/commit/fbbbd5fcde1ba606cb2c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-18 (Wed, 18 Mar 2015) Changed paths: M README.md M tasks/main.yml Log Message: ----------- Add the optional `executable` arg to the git module for hosts with broken gits.

1 0

[galaxyproject/usegalaxy-playbook] bbaf0b: Set up Pulsar on Blacklight
by GitHub 18 Mar '15

18 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: bbaf0b0e3dd1e064a4aa745a0b8439510c592d6c https://github.com/galaxyproject/usegalaxy-playbook/commit/bbaf0b0e3dd1e064… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-18 (Wed, 18 Mar 2015) Changed paths: A files/galaxy/test.galaxyproject.org/nagios/echo_test_blacklight.xml A stage/host_vars/tg-login2.blacklight.psc.xsede.org M stage/inventory M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Set up Pulsar on Blacklight

1 0

[galaxyproject/usegalaxy-playbook] d6b4de: Update galaxy role, Create impersonate.ini on Main
by GitHub 17 Mar '15

17 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: d6b4decdb199e5c6b84b8813e22a9b47dbfefa4a https://github.com/galaxyproject/usegalaxy-playbook/commit/d6b4decdb199e5c6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-17 (Tue, 17 Mar 2015) Changed paths: M galaxy.yml M production/group_vars/galaxyservers.yml M roles/galaxyprojectdotorg.galaxy/README.md M roles/galaxyprojectdotorg.galaxy/defaults/main.yml M roles/galaxyprojectdotorg.galaxy/meta/.galaxy_install_info M roles/galaxyprojectdotorg.galaxy/tasks/clone.yml M roles/galaxyprojectdotorg.galaxy/tasks/download.yml M roles/galaxyprojectdotorg.galaxy/tasks/main.yml M roles/galaxyprojectdotorg.galaxy/tasks/static_setup.yml A roles/galaxyprojectdotorg.galaxy/templates/galaxy.ini.j2 R roles/galaxyprojectdotorg.galaxy/templates/universe_wsgi.ini.j2 Log Message: ----------- Update galaxy role, Create impersonate.ini on Main Commit: bb261f990fc02759fa6997d95c547b2dc2242ae7 https://github.com/galaxyproject/usegalaxy-playbook/commit/bb261f990fc02759… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-17 (Tue, 17 Mar 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Increase concurrency limits on Test Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/91c03c837579...…

1 0

[galaxyproject/usegalaxy-playbook] 91c03c: Templates for disposable emails and reports config...
by GitHub 17 Mar '15

17 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 91c03c837579085a8a32fb02e4d0a9b402b48f7b https://github.com/galaxyproject/usegalaxy-playbook/commit/91c03c837579085a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-17 (Tue, 17 Mar 2015) Changed paths: M production/group_vars/galaxyservers.yml Log Message: ----------- Templates for disposable emails and reports config were in the static copy hash and weren't being filled.

1 0