Branch: refs/heads/release_17.01
Home: https://github.com/galaxyproject/galaxy
Commit: e3255fd3cb7c1b0cf9ce9fa82f0a4a9c39719f19
https://github.com/galaxyproject/galaxy/commit/e3255fd3cb7c1b0cf9ce9fa82f0a…
Author: nekrut <anton(a)nekrut.org>
Date: 2017-03-21 (Tue, 21 Mar 2017)
Changed paths:
M lib/galaxy/tools/filter_failed_collection.xml
M lib/galaxy/tools/flatten_collection.xml
M lib/galaxy/tools/merge_collection.xml
M lib/galaxy/tools/unzip_collection.xml
M lib/galaxy/tools/zip_collection.xml
Log Message:
-----------
made collection ops help sections slightly more readable
Commit: d9c3a0bb57e63a1849bb3f55c056ae0384a2279a
https://github.com/galaxyproject/galaxy/commit/d9c3a0bb57e63a1849bb3f55c056…
Author: Anton Nekrutenko <anekrut(a)gmail.com>
Date: 2017-03-21 (Tue, 21 Mar 2017)
Changed paths:
M lib/galaxy/tools/unzip_collection.xml
Log Message:
-----------
Update unzip_collection.xml
fixed typos identified by @mvdbeek
Commit: c84b3ba0b8f9de983d43ea17c165856d23960911
https://github.com/galaxyproject/galaxy/commit/c84b3ba0b8f9de983d43ea17c165…
Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com>
Date: 2017-03-21 (Tue, 21 Mar 2017)
Changed paths:
M lib/galaxy/tools/filter_failed_collection.xml
M lib/galaxy/tools/flatten_collection.xml
M lib/galaxy/tools/merge_collection.xml
M lib/galaxy/tools/unzip_collection.xml
M lib/galaxy/tools/zip_collection.xml
Log Message:
-----------
Merge pull request #3788 from jmchilton/backport_collection_option_help_fixes
[17.01] Backport collection operation help fixes
Compare: https://github.com/galaxyproject/galaxy/compare/ec88dda1e9c9...c84b3ba0b8f9
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 61677d2026f155868ad57a1289609c1aad1044e6
https://github.com/galaxyproject/galaxy/commit/61677d2026f155868ad57a128960…
Author: nekrut <anton(a)nekrut.org>
Date: 2017-03-20 (Mon, 20 Mar 2017)
Changed paths:
M lib/galaxy/tools/filter_failed_collection.xml
M lib/galaxy/tools/flatten_collection.xml
M lib/galaxy/tools/merge_collection.xml
M lib/galaxy/tools/unzip_collection.xml
M lib/galaxy/tools/zip_collection.xml
Log Message:
-----------
made collection ops help sections slightly more readable
Commit: a8d0c46ee97b37df20ac2022af4309890ca0c6e0
https://github.com/galaxyproject/galaxy/commit/a8d0c46ee97b37df20ac2022af43…
Author: Anton Nekrutenko <anekrut(a)gmail.com>
Date: 2017-03-21 (Tue, 21 Mar 2017)
Changed paths:
M lib/galaxy/tools/unzip_collection.xml
Log Message:
-----------
Update unzip_collection.xml
fixed typos identified by @mvdbeek
Commit: eadbb16462f2bd6f6f8f8cf71d992f0c5389c80f
https://github.com/galaxyproject/galaxy/commit/eadbb16462f2bd6f6f8f8cf71d99…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-03-21 (Tue, 21 Mar 2017)
Changed paths:
M lib/galaxy/tools/filter_failed_collection.xml
M lib/galaxy/tools/flatten_collection.xml
M lib/galaxy/tools/merge_collection.xml
M lib/galaxy/tools/unzip_collection.xml
M lib/galaxy/tools/zip_collection.xml
Log Message:
-----------
Merge pull request #3784 from nekrut/collection_ops_help_fixes
made collection ops help sections slightly more readable
Compare: https://github.com/galaxyproject/galaxy/compare/a5b0e760503d...eadbb16462f2
Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: 92e004b615d7297191f06b5a3c729d8ec6533207
https://github.com/galaxyproject/infrastructure-playbook/commit/92e004b615d…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-03-20 (Mon, 20 Mar 2017)
Changed paths:
M galaxyenv/group_vars/cvmfsstratum1servers.yml
Log Message:
-----------
Decrease squid memory usage on stratum 1s
Commit: 9ad75c96e7be125768960f0bdd62fb30f569512f
https://github.com/galaxyproject/infrastructure-playbook/commit/9ad75c96e7b…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-03-21 (Tue, 21 Mar 2017)
Changed paths:
M galaxyenv/host_vars/cvmfs0-psu0.galaxyproject.org.yml
M galaxyenv/host_vars/cvmfs0-tacc0.galaxyproject.org.yml
M galaxyenv/host_vars/cvmfs1-psu0.galaxyproject.org.yml
A galaxyenv/host_vars/jetstream-iu0.galaxyproject.org.yml
A galaxyenv/host_vars/jetstream-tacc0.galaxyproject.org.yml
M galaxyenv/inventory
M galaxyenv/playbook.yml
A galaxyenv/secret_group_vars/dockersslservers.yml
A jetstream_common/files/etc/dhclient.conf
A jetstream_common/files/etc/ifcfg-eth1
M jetstreamiuenv/group_vars/controllers.yml
A jetstreamtaccenv/files
M jetstreamtaccenv/group_vars/controllers.yml
A roles/cvmfs/meta/main.yml
A roles/docker/README.md
A roles/docker/defaults/main.yml
A roles/docker/handlers/main.yml
A roles/docker/tasks/install_debian.yml
A roles/docker/tasks/install_redhat.yml
A roles/docker/tasks/main.yml
A roles/docker/tasks/ssl-ca-passphrase.yml
A roles/docker/tasks/ssl-gen-ca.yml
A roles/docker/tasks/ssl-gen-client-cert.yml
A roles/docker/tasks/ssl-gen-server-cert.yml
A roles/docker/tasks/ssl-server.yml
A roles/docker_swarm/meta/main.yml
A roles/docker_swarm/tasks/main.yml
A roles/docker_swarm/tasks/swarm-init.yml
Log Message:
-----------
Add roles for docker and docker swarm, create a swarm on Jetstream and
PSU
Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/c1e9057120…
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 18cb50ecea80b3feeac02a2ef07c4cbd816c39d4
https://github.com/galaxyproject/galaxy/commit/18cb50ecea80b3feeac02a2ef07c…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-03-20 (Mon, 20 Mar 2017)
Changed paths:
A client/galaxy/scripts/mvc/collection/base-creator.js
M client/galaxy/scripts/mvc/collection/list-collection-creator.js
M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js
A static/maps/mvc/collection/base-creator.js.map
M static/maps/mvc/collection/list-collection-creator.js.map
M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js
M static/scripts/bundled/login.bundled.js.map
A static/scripts/mvc/collection/base-creator.js
M static/scripts/mvc/collection/list-collection-creator.js
M static/scripts/mvc/collection/list-of-pairs-collection-creator.js
Log Message:
-----------
Abstraction for re-use between collection creators.
The new mixin reduces the duplication between the list and list of paired collection creators.
I'd like to add functionality related to hiding the original datasets (especially useful for direct upload of collections but previously requested also) but I'd like to reduce the duplication related to doing that first. This is a start in that direction.
Commit: a5b0e760503dc09ac99d47bbcde1524c7f3e37a4
https://github.com/galaxyproject/galaxy/commit/a5b0e760503dc09ac99d47bbcde1…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2017-03-21 (Tue, 21 Mar 2017)
Changed paths:
A client/galaxy/scripts/mvc/collection/base-creator.js
M client/galaxy/scripts/mvc/collection/list-collection-creator.js
M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js
A static/maps/mvc/collection/base-creator.js.map
M static/maps/mvc/collection/list-collection-creator.js.map
M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js
M static/scripts/bundled/login.bundled.js.map
A static/scripts/mvc/collection/base-creator.js
M static/scripts/mvc/collection/list-collection-creator.js
M static/scripts/mvc/collection/list-of-pairs-collection-creator.js
Log Message:
-----------
Merge pull request #3781 from jmchilton/collection-builders
Abstraction for re-use between collection creators.
Compare: https://github.com/galaxyproject/galaxy/compare/5428d39adb6b...a5b0e760503d