Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 131aeb66b4884200c6c9433aef9a80aabf98d132
https://github.com/galaxyproject/galaxy/commit/131aeb66b4884200c6c9433aef9a…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-03-15 (Wed, 15 Mar 2017)
Changed paths:
M lib/galaxy/app.py
M lib/galaxy/config.py
M lib/galaxy/queue_worker.py
M lib/galaxy/queues.py
M lib/galaxy/tools/toolbox/watcher.py
R lib/galaxy/util/postfork.py
M lib/galaxy/web/framework/middleware/batch.py
M lib/galaxy/web/framework/middleware/sentry.py
A lib/galaxy/web/stack/__init__.py
M lib/galaxy/webapps/galaxy/buildapp.py
M lib/galaxy/webapps/reports/app.py
M lib/galaxy/webapps/reports/buildapp.py
M lib/galaxy/webapps/tool_shed/app.py
M lib/galaxy/webapps/tool_shed/buildapp.py
M lib/galaxy/webapps/util.py
M lib/tool_shed/galaxy_install/update_repository_manager.py
Log Message:
-----------
Abstract uWSGI handling into new galaxy.web.stack package.
Commit: d18b4d13cbc25c85005e4b19a02abedbed7aba46
https://github.com/galaxyproject/galaxy/commit/d18b4d13cbc25c85005e4b19a02a…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-03-20 (Mon, 20 Mar 2017)
Changed paths:
M lib/galaxy/webapps/galaxy/buildapp.py
M lib/galaxy/webapps/reports/buildapp.py
M lib/galaxy/webapps/tool_shed/buildapp.py
M lib/galaxy/webapps/util.py
Log Message:
-----------
Add an exception for unsupported middleware wrapping for better failure
handling.
Commit: 5440889bf6a7c5f278860760cd8c4ba18708c263
https://github.com/galaxyproject/galaxy/commit/5440889bf6a7c5f278860760cd8c…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2017-03-20 (Mon, 20 Mar 2017)
Changed paths:
M lib/galaxy/app.py
M lib/galaxy/config.py
M lib/galaxy/queue_worker.py
M lib/galaxy/queues.py
M lib/galaxy/tools/toolbox/watcher.py
R lib/galaxy/util/postfork.py
M lib/galaxy/web/framework/middleware/batch.py
M lib/galaxy/web/framework/middleware/sentry.py
A lib/galaxy/web/stack/__init__.py
M lib/galaxy/webapps/galaxy/buildapp.py
M lib/galaxy/webapps/reports/app.py
M lib/galaxy/webapps/reports/buildapp.py
M lib/galaxy/webapps/tool_shed/app.py
M lib/galaxy/webapps/tool_shed/buildapp.py
M lib/galaxy/webapps/util.py
M lib/tool_shed/galaxy_install/update_repository_manager.py
Log Message:
-----------
Merge pull request #3759 from natefoo/abstract-app-stack
Abstract uWSGI handling into new galaxy.web.stack package
Compare: https://github.com/galaxyproject/galaxy/compare/cd36aa0878ae...5440889bf6a7
Branch: refs/heads/usegalaxy
Home: https://github.com/galaxyproject/galaxy
Commit: 376212eff900d28450165ddf715f3d9a29870ca9
https://github.com/galaxyproject/galaxy/commit/376212eff900d28450165ddf715f…
Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com>
Date: 2017-03-17 (Fri, 17 Mar 2017)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
Fix for uploading rdata datasets when explicitly declaring datatype.
Now that ext's are forced to be all lowercase, you cannot upload a dataset with any uppercase characters in the extension.
TODO: An additional fix directly for the upload tool/datatype widget should be pursued that will prevent these issues.
Commit: e3e24facc72103dadeca2dc72c9d038f907eb10e
https://github.com/galaxyproject/galaxy/commit/e3e24facc72103dadeca2dc72c9d…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-03-20 (Mon, 20 Mar 2017)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
Merge pull request #3766 from blankenberg/17.01-rdata-upload-fix
[17.01] Fix for uploading rdata datasets when explicitly declaring datatype.
Commit: 3b4cf0d578d871f8bf3e005e0b5d7c65c78d1b2d
https://github.com/galaxyproject/galaxy/commit/3b4cf0d578d871f8bf3e005e0b5d…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2017-03-20 (Mon, 20 Mar 2017)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
Merge pull request #3778 from galaxyproject/release_17.01
[usegalaxy] merge Release 17.01
Compare: https://github.com/galaxyproject/galaxy/compare/f76e0921d7d2...3b4cf0d578d8
Branch: refs/heads/master
Home: https://github.com/galaxyproject/usegalaxy-playbook
Commit: d37d808bf7a6f3b8e5688fd0581289deb0aca4ab
https://github.com/galaxyproject/usegalaxy-playbook/commit/d37d808bf7a6f3b8…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-03-20 (Mon, 20 Mar 2017)
Changed paths:
A common/docker/galaxy-installer/Dockerfile.main
A common/docker/galaxy-installer/Dockerfile.test
A common/docker/galaxy-installer/run_main.sh
A common/docker/galaxy-installer/run_test.sh
A common/docker/galaxy-update/Dockerfile
A common/docker/galaxy-update/condarc
Log Message:
-----------
Add Dockerfiles for galaxy-update and galaxy-installer. Note galaxy.ini not included.
Branch: refs/heads/release_17.01
Home: https://github.com/galaxyproject/galaxy
Commit: 376212eff900d28450165ddf715f3d9a29870ca9
https://github.com/galaxyproject/galaxy/commit/376212eff900d28450165ddf715f…
Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com>
Date: 2017-03-17 (Fri, 17 Mar 2017)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
Fix for uploading rdata datasets when explicitly declaring datatype.
Now that ext's are forced to be all lowercase, you cannot upload a dataset with any uppercase characters in the extension.
TODO: An additional fix directly for the upload tool/datatype widget should be pursued that will prevent these issues.
Commit: e3e24facc72103dadeca2dc72c9d038f907eb10e
https://github.com/galaxyproject/galaxy/commit/e3e24facc72103dadeca2dc72c9d…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-03-20 (Mon, 20 Mar 2017)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
Merge pull request #3766 from blankenberg/17.01-rdata-upload-fix
[17.01] Fix for uploading rdata datasets when explicitly declaring datatype.
Compare: https://github.com/galaxyproject/galaxy/compare/6ab5cc1caf8c...e3e24facc721