Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 3332dfb6717e9bd368341e0bc0aa51d3b53fa861
https://github.com/galaxyproject/galaxy/commit/3332dfb6717e9bd368341e0bc0aa…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-05-04 (Thu, 04 May 2017)
Changed paths:
M lib/galaxy/tools/deps/container_resolvers/explicit.py
M lib/galaxy/util/plugin_config.py
Log Message:
-----------
[17.05] Fix setting up explicit container resolution from a container resolution config file.
Commit: f26e358321481500d0f993e0d7b2be9bdd1047b8
https://github.com/galaxyproject/galaxy/commit/f26e358321481500d0f993e0d7b2…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-05-05 (Fri, 05 May 2017)
Changed paths:
M lib/galaxy/jobs/rule_helper.py
M lib/galaxy/tools/deps/containers.py
Log Message:
-----------
Fix docker_dispatch dynamic destination rule for container resolvers.
Commit: a9faa4873e4509a60822019afe3faa4cab3f8336
https://github.com/galaxyproject/galaxy/commit/a9faa4873e4509a60822019afe3f…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-05-05 (Fri, 05 May 2017)
Changed paths:
M lib/galaxy/jobs/rule_helper.py
M lib/galaxy/jobs/runners/__init__.py
M lib/galaxy/tools/deps/container_resolvers/mulled.py
M lib/galaxy/tools/deps/containers.py
Log Message:
-----------
Do not attempt to use mulled containers if tool requires legacy Galaxy environment.
Commit: 04bb1e85cd16a04d6968c8d10755bd5e142831b1
https://github.com/galaxyproject/galaxy/commit/04bb1e85cd16a04d6968c8d10755…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths:
M client/galaxy/scripts/mvc/upload/collection/collection-view.js
M static/maps/mvc/upload/collection/collection-view.js.map
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js.map
M static/scripts/mvc/upload/collection/collection-view.js
Log Message:
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[17.05] Fix FTP upload of multiple files in collection uploader.
Commit: aa1e4cea148ba6a1683d905704191e64ee64a46c
https://github.com/galaxyproject/galaxy/commit/aa1e4cea148ba6a1683d90570419…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths:
M client/galaxy/scripts/mvc/upload/collection/collection-view.js
M static/maps/mvc/upload/collection/collection-view.js.map
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js.map
M static/scripts/mvc/upload/collection/collection-view.js
Log Message:
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Merge pull request #4058 from jmchilton/upload_ftp_fix
[17.05] Fix FTP upload of multiple files in collection uploader.
Commit: 0bafd683f152f28a193ee39a415018e4a8952767
https://github.com/galaxyproject/galaxy/commit/0bafd683f152f28a193ee39a4150…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-05-12 (Fri, 12 May 2017)
Changed paths:
M lib/galaxy/tools/deps/container_resolvers/explicit.py
M lib/galaxy/util/plugin_config.py
Log Message:
-----------
Merge pull request #4020 from jmchilton/fix_explicit_container_resolver_from_config
[17.05] Fix setting up explicit container resolution...
Commit: 185c76605f2d0da1d8e261b9b3b3a626b8ba6226
https://github.com/galaxyproject/galaxy/commit/185c76605f2d0da1d8e261b9b3b3…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-05-12 (Fri, 12 May 2017)
Changed paths:
M lib/galaxy/jobs/rule_helper.py
M lib/galaxy/jobs/runners/__init__.py
M lib/galaxy/tools/deps/container_resolvers/mulled.py
M lib/galaxy/tools/deps/containers.py
Log Message:
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Merge pull request #4033 from jmchilton/dispatch_fix
[17.05] Fixes for containerized job executions.
Commit: 5e880815ade8756964017a446c6ceaa5cbb72f1a
https://github.com/galaxyproject/galaxy/commit/5e880815ade8756964017a446c6c…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2017-05-14 (Sun, 14 May 2017)
Changed paths:
M config/plugins/webhooks/demo/search/config/searchover.yaml
M config/plugins/webhooks/demo/tool_list/config/tool_list.yml
M test/functional/webhooks/trans_object/config/trans_object.yaml
Log Message:
-----------
Use galaxy.root by default
Commit: 88c0635ef70d8054b50dcbfae2788a9cfa7bd973
https://github.com/galaxyproject/galaxy/commit/88c0635ef70d8054b50dcbfae278…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2017-05-14 (Sun, 14 May 2017)
Changed paths:
M doc/source/admin/special_topics/webhooks.rst
Log Message:
-----------
Link has already rotted
Commit: 6dd145ed1a97263eb9cca42f26613e28b22f177d
https://github.com/galaxyproject/galaxy/commit/6dd145ed1a97263eb9cca42f2661…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2017-05-14 (Sun, 14 May 2017)
Changed paths:
M doc/source/admin/special_topics/webhooks.rst
Log Message:
-----------
Try and document a bit
Commit: bd83608a2fb9ac6e8ec0391ab803f569e134d4fa
https://github.com/galaxyproject/galaxy/commit/bd83608a2fb9ac6e8ec0391ab803…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/mvc/grid/grid-template.js
M static/maps/mvc/grid/grid-template.js.map
M static/scripts/mvc/grid/grid-template.js
Log Message:
-----------
Fix global grid action events
Commit: d3427a1344d165cf6b76b3e2ef4c2113f5ea1916
https://github.com/galaxyproject/galaxy/commit/d3427a1344d165cf6b76b3e2ef4c…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js.map
Log Message:
-----------
Rebuild
Commit: 6614e94a4953a8352515edded517d060cd6265c7
https://github.com/galaxyproject/galaxy/commit/6614e94a4953a8352515edded517…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M config/plugins/webhooks/demo/search/config/searchover.yaml
M config/plugins/webhooks/demo/tool_list/config/tool_list.yml
M doc/source/admin/special_topics/webhooks.rst
M test/functional/webhooks/trans_object/config/trans_object.yaml
Log Message:
-----------
Merge pull request #4065 from erasche/fix-4064
[17.05] Correct webhooks to use Galaxy.root and be compatible with proxy_prefix
Commit: 5eadd4842dcd2aedcc6a496d9bcaecd8048e4ead
https://github.com/galaxyproject/galaxy/commit/5eadd4842dcd2aedcc6a496d9bca…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-05-16 (Tue, 16 May 2017)
Changed paths:
M client/galaxy/scripts/mvc/grid/grid-template.js
M client/galaxy/scripts/mvc/upload/collection/collection-view.js
M config/plugins/webhooks/demo/search/config/searchover.yaml
M config/plugins/webhooks/demo/tool_list/config/tool_list.yml
M doc/source/admin/special_topics/webhooks.rst
M lib/galaxy/jobs/rule_helper.py
M lib/galaxy/jobs/runners/__init__.py
M lib/galaxy/tools/deps/container_resolvers/explicit.py
M lib/galaxy/tools/deps/container_resolvers/mulled.py
M lib/galaxy/tools/deps/containers.py
M lib/galaxy/util/plugin_config.py
M static/maps/mvc/grid/grid-template.js.map
M static/maps/mvc/upload/collection/collection-view.js.map
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/mvc/grid/grid-template.js
M static/scripts/mvc/upload/collection/collection-view.js
M test/functional/webhooks/trans_object/config/trans_object.yaml
Log Message:
-----------
Merge branch 'release_17.05' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/18349b17b25e...5eadd4842dcd
Branch: refs/heads/reorg
Home: https://github.com/galaxyproject/usegalaxy-playbook
Commit: ad99d8528a1b4eaa650edf3783ccd81cfa835e42
https://github.com/galaxyproject/usegalaxy-playbook/commit/ad99d8528a1b4eaa…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-05-16 (Tue, 16 May 2017)
Changed paths:
M README.md
M env/common/tools.yml
M env/common/update_shed.yml
M env/main/group_vars/galaxyservers/vars.yml
M env/main/group_vars/galaxystagingservers.yml
M env/main/group_vars/pulsarservers/vars.yml
M env/main/group_vars/webservers.yml
M env/test/group_vars/galaxyservers/vars.yml
M env/test/group_vars/pulsarservers/vars.yml
M env/test/group_vars/webservers/vars.yml
M env/testtoolshed/group_vars/toolshedservers/vars.yml
M env/toolshed/group_vars/toolshedservers/vars.yml
M roles/galaxyproject.galaxy/README.md
M roles/galaxyproject.galaxy/defaults/main.yml
M roles/galaxyproject.galaxy/handlers/main.yml
M roles/galaxyproject.galaxy/tasks/main.yml
M roles/galaxyproject.galaxy_toolshed/README.md
M roles/galaxyproject.galaxy_toolshed/defaults/main.yml
M roles/galaxyproject.galaxy_toolshed/handlers/main.yml
M roles/galaxyproject.galaxy_toolshed/tasks/main.yml
M roles/galaxyproject.interactive_environments/README.md
M roles/galaxyproject.interactive_environments/defaults/main.yml
M roles/galaxyproject.interactive_environments/handlers/main.yml
M roles/galaxyproject.interactive_environments/tasks/main.yml
M roles/galaxyproject.nginx/README.md
M roles/galaxyproject.nginx/defaults/main.yml
M roles/galaxyproject.nginx/handlers/main.yml
M roles/galaxyproject.nginx/tasks/main.yml
M roles/galaxyproject.proftpd/README.md
M roles/galaxyproject.proftpd/defaults/main.yml
M roles/galaxyproject.proftpd/handlers/main.yml
M roles/galaxyproject.proftpd/tasks/debian.yml
M roles/galaxyproject.proftpd/tasks/galaxy_auth.yml
M roles/galaxyproject.proftpd/tasks/main.yml
M roles/galaxyproject.proftpd/tasks/redhat.yml
M roles/galaxyproject.proftpd/tasks/tls.yml
M roles/galaxyproject.proftpd/tests/test.yml
M roles/galaxyproject.proftpd/vars/main.yml
M roles/galaxyproject.pulsar/README.md
M roles/galaxyproject.pulsar/defaults/main.yml
M roles/galaxyproject.pulsar/tasks/main.yml
Log Message:
-----------
Finish renaming galaxyprojectdotorg -> galaxyproject
Branch: refs/heads/reorg
Home: https://github.com/galaxyproject/usegalaxy-playbook
Commit: e24a4fee0cb63c1151a583a38bbabf69afdf0e7c
https://github.com/galaxyproject/usegalaxy-playbook/commit/e24a4fee0cb63c11…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2017-05-12 (Fri, 12 May 2017)
Changed paths:
M README.md
R common/docker/galaxy-installer/Dockerfile.main
R common/docker/galaxy-installer/Dockerfile.test
R common/docker/galaxy-installer/run_main.sh
R common/docker/galaxy-installer/run_test.sh
R common/docker/galaxy-update/Dockerfile
R common/docker/galaxy-update/condarc
R common/group_vars/all.yml
R common/group_vars/all_debian_based_hosts.yml
R common/group_vars/redhat_dbservers.yml
R common/group_vars/webservers.yml
R common/host_vars/galaxy-db-01.tacc.utexas.edu.yml
R common/inventory
R common/secret_vars/ssl.yml
R common/secret_vars/supervisorusers.yml
R common/secret_vars/trellocardcreatorservers.yml
R common_infrastructure.yml
R ec2.yml
A env/common/files/galaxy/dynamic_rules/jetstream.py
A env/common/files/galaxy/dynamic_rules/single_dynamic_memory.py
A env/common/files/galaxy/static/welcome_img/GCC2017EarlyReg.png
A env/common/files/galaxy/static/welcome_img/ISMBECCB2017Tutorial.png
M env/common/group_vars/toolshedwebservers.yml
M env/common/templates/galaxy/static/welcome.html.j2
A env/common/tools.yml
M env/common/update_shed.yml
A env/main/_inc_config_post_tasks.yml
A env/main/_inc_restart.yml
A env/main/_inc_snapshot.yml
A env/main/_inc_static.yml
A env/main/config.yml
A env/main/files/galaxy/config/builds.txt
A env/main/files/galaxy/config/data_manager_conf.xml
A env/main/files/galaxy/config/disposable_email_blacklist.conf
A env/main/files/galaxy/config/job_metrics_conf.xml
A env/main/files/galaxy/config/job_resource_params_conf.xml
A env/main/files/galaxy/config/nagios_tool_conf.xml
A env/main/files/galaxy/config/object_store_conf.xml
A env/main/files/galaxy/config/pulsar_jetstream.yml
A env/main/files/galaxy/config/pulsar_jetstream_actions.yml
A env/main/files/galaxy/config/pulsar_stampede_actions.yml
A env/main/files/galaxy/config/tool_conf.xml
A env/main/files/galaxy/config/tool_data_table_conf.xml
A env/main/files/galaxy/config/tool_sheds_conf.xml
A env/main/files/galaxy/config/ucsc_build_sites.txt
A env/main/files/galaxy/dynamic_rules/bridges_select.py
A env/main/files/galaxy/dynamic_rules/multi_dynamic_walltime.py
A env/main/files/galaxy/dynamic_rules/nvc_dynamic_memory.py
A env/main/files/galaxy/dynamic_rules/reserved.py
A env/main/files/galaxy/error
A env/main/files/galaxy/galaxy_version.yml
A env/main/files/galaxy/nagios/echo_main_bridges.xml
A env/main/files/galaxy/nagios/echo_main_cluster.xml
A env/main/files/galaxy/nagios/echo_main_jetstream_iu.xml
A env/main/files/galaxy/nagios/echo_main_jetstream_tacc.xml
A env/main/files/galaxy/nagios/echo_main_stampede.xml
A env/main/files/galaxy/nagios/echo_main_w1_handler0.xml
A env/main/files/galaxy/nagios/echo_main_w1_handler1.xml
A env/main/files/galaxy/nagios/echo_main_w1_handler2.xml
A env/main/files/galaxy/nagios/echo_main_w2_handler0.xml
A env/main/files/galaxy/nagios/echo_main_w2_handler1.xml
A env/main/files/galaxy/nagios/echo_main_w2_handler2.xml
A env/main/files/galaxy/static
A env/main/files/galaxy/tool_list.yaml
A env/main/files/galaxy/var/integrated_tool_panel.xml
A env/main/files/galaxy/var/migrated_tools_conf.xml
A env/main/files/galaxy/var/shed_data_manager_conf.xml
A env/main/files/galaxy/var/shed_tool_conf.xml
A env/main/files/galaxy/var/shed_tool_data_table_conf.xml
A env/main/files/pulsar
A env/main/files/ssl
A env/main/group_vars/all.yml
A env/main/group_vars/dbservers/vars.yml
A env/main/group_vars/dbservers/vault.yml
A env/main/group_vars/ftpservers/vars.yml
A env/main/group_vars/ftpservers/vault.yml
A env/main/group_vars/galaxyjobservers.yml
A env/main/group_vars/galaxyservers/vars.yml
A env/main/group_vars/galaxyservers/vault.yml
A env/main/group_vars/galaxystagingservers.yml
A env/main/group_vars/galaxywebservers.yml
A env/main/group_vars/pulsarservers/vars.yml
A env/main/group_vars/pulsarservers/vault.yml
A env/main/group_vars/sslservers
A env/main/group_vars/supervisorservers/vars.yml
A env/main/group_vars/supervisorservers/vault.yml
A env/main/group_vars/webservers.yml
A env/main/host_vars/br005.bridges.psc.edu.yml
A env/main/host_vars/galaxy-web-03.tacc.utexas.edu.yml
A env/main/host_vars/galaxy-web-04.tacc.utexas.edu.yml
A env/main/host_vars/galaxy-web-05.tacc.utexas.edu.yml
A env/main/host_vars/jetstream-iu0.galaxyproject.org.yml
A env/main/host_vars/jetstream-tacc0.galaxyproject.org.yml
A env/main/host_vars/login5.stampede.tacc.utexas.edu.yml
A env/main/inventory
A env/main/pulsar.yml
A env/main/restart.yml
A env/main/snapshot.yml
A env/main/stack.yml
A env/main/static.yml
A env/main/templates/galaxy/config/build_sites.yml.j2
A env/main/templates/galaxy/config/galaxy.ini.j2
A env/main/templates/galaxy/config/job_conf.xml.j2
A env/main/templates/galaxy/config/reports.ini.j2
A env/main/templates/galaxy/config/uwsgi.ini.j2
A env/main/templates/galaxy/static
A env/main/templates/nginx/galaxy_bx.j2
A env/main/templates/nginx/usegalaxy.j2
A env/main/templates/nginx/usegalaxy_rewrites.conf.j2
A env/main/templates/nginx/usegalaxy_staging.j2
A env/main/templates/pulsar
A env/main/templates/supervisor
A env/main/update.yml
R env/test/files/galaxy/dynamic_rules/jetstream.py
R env/test/files/galaxy/dynamic_rules/single_dynamic_memory.py
M env/test/group_vars/galaxyservers/vars.yml
M env/test/group_vars/pulsarservers/vars.yml
M env/test/inventory
M env/test/templates/galaxy/config/galaxy.ini.j2
M env/test/templates/nginx/galaxy_test.j2
M env/testtoolshed/group_vars/toolshedservers/vars.yml
A env/toolshed/files/ssl
A env/toolshed/group_vars/sslservers
A env/toolshed/group_vars/toolsheddbservers.yml
A env/toolshed/group_vars/toolshedservers/common_vars.yml
A env/toolshed/group_vars/toolshedservers/common_vault.yml
A env/toolshed/group_vars/toolshedservers/vars.yml
A env/toolshed/group_vars/toolshedservers/vault.yml
A env/toolshed/group_vars/toolshedwebservers.yml
A env/toolshed/inventory
A env/toolshed/stack.yml
A env/toolshed/templates/nginx/toolshed.j2
A env/toolshed/templates/supervisor/toolshed.j2
A env/toolshed/update.yml
R files/galaxy/common/config/disposable_email_blacklist.conf
R files/galaxy/common/config/pulsar_jetstream_actions.yml
R files/galaxy/common/dynamic_rules/bridges_select.py
R files/galaxy/common/dynamic_rules/multi_dynamic_walltime.py
R files/galaxy/common/dynamic_rules/nvc_dynamic_memory.py
R files/galaxy/common/dynamic_rules/reserved.py
R files/galaxy/common/error/413/index.html
R files/galaxy/common/error/502/index.shtml
R files/galaxy/common/error/content_bg.png
R files/galaxy/common/error/error_message_icon.png
R files/galaxy/common/error/masthead_bg.png
R files/galaxy/common/static/terms.html
R files/galaxy/common/static/welcome_img/201511_France.png
R files/galaxy/common/static/welcome_img/50PlusPublic.png
R files/galaxy/common/static/welcome_img/60PlusOdometer1.png
R files/galaxy/common/static/welcome_img/70PlusOdometer.png
R files/galaxy/common/static/welcome_img/80PlusOdometer.png
R files/galaxy/common/static/welcome_img/Ballaxy.png
R files/galaxy/common/static/welcome_img/Barcelona_2015.png
R files/galaxy/common/static/welcome_img/CARTGalaxy.png
R files/galaxy/common/static/welcome_img/CPTGalaxy.png
R files/galaxy/common/static/welcome_img/CoSSci.png
R files/galaxy/common/static/welcome_img/EDGW2017.jpg
R files/galaxy/common/static/welcome_img/ErasmusGalaxy.png
R files/galaxy/common/static/welcome_img/EuropeFall2014.png
R files/galaxy/common/static/welcome_img/EuropeFall2014_2.png
R files/galaxy/common/static/welcome_img/FROGGalaxy.png
R files/galaxy/common/static/welcome_img/G3_2014_v2.png
R files/galaxy/common/static/welcome_img/GAMe2017.png
R files/galaxy/common/static/welcome_img/GAMe2017RegisterNow.png
R files/galaxy/common/static/welcome_img/GAMe2017TalkAbstracts.png
R files/galaxy/common/static/welcome_img/GAT2016EarlyReg.png
R files/galaxy/common/static/welcome_img/GAT2016OntimeReg.png
R files/galaxy/common/static/welcome_img/GCC2014.png
R files/galaxy/common/static/welcome_img/GCC2014AvoidLate.png
R files/galaxy/common/static/welcome_img/GCC2014Flag.png
R files/galaxy/common/static/welcome_img/GCC2014RegisterNow.png
R files/galaxy/common/static/welcome_img/GCC2015.png
R files/galaxy/common/static/welcome_img/GCC2015AbstractsOpen.png
R files/galaxy/common/static/welcome_img/GCC2015EarlyReg.png
R files/galaxy/common/static/welcome_img/GCC2015PostersDue.png
R files/galaxy/common/static/welcome_img/GCC2015SaveTheseDates.png
R files/galaxy/common/static/welcome_img/GCC2015Scholarships.png
R files/galaxy/common/static/welcome_img/GCC2015TrainingDayVote.png
R files/galaxy/common/static/welcome_img/GCC2016.png
R files/galaxy/common/static/welcome_img/GCC2016CUBloominton.png
R files/galaxy/common/static/welcome_img/GCC2016June4Deadlines.png
R files/galaxy/common/static/welcome_img/GCC2016May20Deadlines.png
R files/galaxy/common/static/welcome_img/GCC2016OralAbstracts.png
R files/galaxy/common/static/welcome_img/GCC2016OralAbstractsDueApril8.png
R files/galaxy/common/static/welcome_img/GCC2016ScholarshipsDomestic.png
R files/galaxy/common/static/welcome_img/GCC2016ScholarshipsInternational.png
R files/galaxy/common/static/welcome_img/GCC2016TrNom.png
R files/galaxy/common/static/welcome_img/GCC2016TrVote.png
R files/galaxy/common/static/welcome_img/GCC2017.png
R files/galaxy/common/static/welcome_img/GCUKisLive.png
R files/galaxy/common/static/welcome_img/GTN.png
R files/galaxy/common/static/welcome_img/GalaxEast.png
R files/galaxy/common/static/welcome_img/GalaxyAdmins201502.png
R files/galaxy/common/static/welcome_img/GalaxyBiostar.png
R files/galaxy/common/static/welcome_img/GalaxyBiostarHelp.png
R files/galaxy/common/static/welcome_img/GalaxyCast1.png
R files/galaxy/common/static/welcome_img/GalaxyIFBDay2014.png
R files/galaxy/common/static/welcome_img/GalaxyIsHiringCascade.png
R files/galaxy/common/static/welcome_img/GalaxyQuest1.png
R files/galaxy/common/static/welcome_img/ISMB2014.png
R files/galaxy/common/static/welcome_img/ImmPortGalaxy.png
R files/galaxy/common/static/welcome_img/LookingToLearn.png
R files/galaxy/common/static/welcome_img/MBAC.png
R files/galaxy/common/static/welcome_img/MPI-HLR-Galaxy.png
R files/galaxy/common/static/welcome_img/MississippiGalaxy.png
R files/galaxy/common/static/welcome_img/PAG2017.png
R files/galaxy/common/static/welcome_img/PIAGalaxy.png
R files/galaxy/common/static/welcome_img/PRABIGalaxy.png
R files/galaxy/common/static/welcome_img/PreSTIGEGalaxy.png
R files/galaxy/common/static/welcome_img/RDF2GraphGalaxy.png
R files/galaxy/common/static/welcome_img/RNA-Seq-Portal.png
R files/galaxy/common/static/welcome_img/RepeatExplorer.png
R files/galaxy/common/static/welcome_img/Riboseq.png
R files/galaxy/common/static/welcome_img/SG2016.png
R files/galaxy/common/static/welcome_img/SlipStreamSlide.png
R files/galaxy/common/static/welcome_img/SupAgro201502.png
R files/galaxy/common/static/welcome_img/TACC_small.png
R files/galaxy/common/static/welcome_img/VSU.png
R files/galaxy/common/static/welcome_img/VideosAreBack.png
R files/galaxy/common/static/welcome_img/WST2015.png
R files/galaxy/common/static/welcome_img/WhaleSharkGalaxy.png
R files/galaxy/common/static/welcome_img/ZBIT.png
R files/galaxy/common/static/welcome_img/cyverse_rgb_200.png
R files/galaxy/common/static/welcome_img/deepTools.png
R files/galaxy/common/static/welcome_img/emory_logo.png
R files/galaxy/common/static/welcome_img/jhu_logo.png
R files/galaxy/common/static/welcome_img/jquery-1.10.2.min.js
R files/galaxy/common/static/welcome_img/jquery.cycle2.min.js
R files/galaxy/common/static/welcome_img/kmerSVMGalaxy.png
R files/galaxy/common/static/welcome_img/ohsu_logo.png
R files/galaxy/common/static/welcome_img/psu_logo.png
R files/galaxy/common/static/welcome_img/tacc_logo.png
R files/galaxy/common/static/welcome_img/welcome_images.001.png
R files/galaxy/common/static/welcome_img/welcome_images.002.png
R files/galaxy/common/static/welcome_img/welcome_images.003.png
R files/galaxy/common/static/welcome_img/widget.js
R files/galaxy/usegalaxy.org/config/builds.txt
R files/galaxy/usegalaxy.org/config/data_manager_conf.xml
R files/galaxy/usegalaxy.org/config/disposable_email_blacklist.conf
R files/galaxy/usegalaxy.org/config/job_metrics_conf.xml
R files/galaxy/usegalaxy.org/config/job_resource_params_conf.xml
R files/galaxy/usegalaxy.org/config/nagios_tool_conf.xml
R files/galaxy/usegalaxy.org/config/object_store_conf.xml
R files/galaxy/usegalaxy.org/config/pulsar_jetstream.yml
R files/galaxy/usegalaxy.org/config/pulsar_jetstream_actions.yml
R files/galaxy/usegalaxy.org/config/pulsar_stampede_actions.yml
R files/galaxy/usegalaxy.org/config/tool_conf.xml
R files/galaxy/usegalaxy.org/config/tool_data_table_conf.xml
R files/galaxy/usegalaxy.org/config/tool_sheds_conf.xml
R files/galaxy/usegalaxy.org/config/ucsc_build_sites.txt
R files/galaxy/usegalaxy.org/dynamic_rules/bridges_select.py
R files/galaxy/usegalaxy.org/dynamic_rules/multi_dynamic_walltime.py
R files/galaxy/usegalaxy.org/dynamic_rules/nvc_dynamic_memory.py
R files/galaxy/usegalaxy.org/dynamic_rules/reserved.py
R files/galaxy/usegalaxy.org/dynamic_rules/single_dynamic_memory.py
R files/galaxy/usegalaxy.org/error
R files/galaxy/usegalaxy.org/nagios/echo_main_bridges.xml
R files/galaxy/usegalaxy.org/nagios/echo_main_cluster.xml
R files/galaxy/usegalaxy.org/nagios/echo_main_jetstream_iu.xml
R files/galaxy/usegalaxy.org/nagios/echo_main_jetstream_tacc.xml
R files/galaxy/usegalaxy.org/nagios/echo_main_stampede.xml
R files/galaxy/usegalaxy.org/nagios/echo_main_w1_handler0.xml
R files/galaxy/usegalaxy.org/nagios/echo_main_w1_handler1.xml
R files/galaxy/usegalaxy.org/nagios/echo_main_w1_handler2.xml
R files/galaxy/usegalaxy.org/nagios/echo_main_w2_handler0.xml
R files/galaxy/usegalaxy.org/nagios/echo_main_w2_handler1.xml
R files/galaxy/usegalaxy.org/nagios/echo_main_w2_handler2.xml
R files/galaxy/usegalaxy.org/static
R files/galaxy/usegalaxy.org/tool_list.yaml
R files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml
R files/galaxy/usegalaxy.org/var/migrated_tools_conf.xml
R files/galaxy/usegalaxy.org/var/shed_data_manager_conf.xml
R files/galaxy/usegalaxy.org/var/shed_tool_conf.xml
R files/galaxy/usegalaxy.org/var/shed_tool_data_table_conf.xml
R files/pulsar/usegalaxy.org/config/bridges_dependency_resolvers_conf.xml
R files/ssl/radegast.galaxyproject.org_cert.pem
R files/ssl/usegalaxy.org_cert.pem
R files/ssl/wildcard_cert.pem
R files/toolshed/common/error/413/index.html
R files/toolshed/common/error/502/index.shtml
R files/toolshed/common/error/content_bg.png
R files/toolshed/common/error/error_message_icon.png
R files/toolshed/common/error/masthead_bg.png
R files/toolshed/toolshed.g2.bx.psu.edu/error
R galaxy.yml
R production/files/interactive_environments/plugins/.ansible_ie_role_current_version
R production/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample
R production/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.xml
R production/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js
R production/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako
R production/files/interactive_environments/plugins/common/templates/ie.mako
R production/files/interactive_environments/plugins/interactive_environments.dtd
R production/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample
R production/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample
R production/files/interactive_environments/plugins/jupyter/config/jupyter.xml
R production/files/interactive_environments/plugins/jupyter/static/js/jupyter.js
R production/files/interactive_environments/plugins/jupyter/templates/jupyter.mako
R production/files/interactive_environments/plugins/neo/config/allowed_images.yml.sample
R production/files/interactive_environments/plugins/neo/config/neo.ini.sample
R production/files/interactive_environments/plugins/neo/config/neo.xml
R production/files/interactive_environments/plugins/neo/static/js/neo.js
R production/files/interactive_environments/plugins/neo/templates/neo.mako
R production/files/interactive_environments/plugins/phinch/config/phinch.ini.sample
R production/files/interactive_environments/plugins/phinch/config/phinch.xml
R production/files/interactive_environments/plugins/phinch/static/js/phinch.js
R production/files/interactive_environments/plugins/phinch/templates/phinch.mako
R production/files/interactive_environments/plugins/rstudio/config/allowed_images.yml.sample
R production/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample
R production/files/interactive_environments/plugins/rstudio/config/rstudio.xml
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/base64.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/jsbn.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/prng4.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/rng.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/rsa.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio.big.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio.min.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/base64.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/jsbn.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/prng4.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/rng.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/rsa.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/base64.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/jsbn.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/prng4.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rng.js
R production/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rsa.js
R production/files/interactive_environments/plugins/rstudio/static/js/rstudio.js
R production/files/interactive_environments/plugins/rstudio/templates/rstudio.mako
R production/files/interactive_environments/proxy/.ansible_ie_role_current_version
R production/files/interactive_environments/proxy/Dockerfile
R production/files/interactive_environments/proxy/README.md
R production/files/interactive_environments/proxy/lib/main.js
R production/files/interactive_environments/proxy/lib/mapper.js
R production/files/interactive_environments/proxy/lib/proxy.js
R production/files/interactive_environments/proxy/package.json
R production/galaxy_version.yml
R production/group_vars/all.yml
R production/group_vars/galaxydbservers.yml
R production/group_vars/galaxyjobservers.yml
R production/group_vars/galaxyservers.yml
R production/group_vars/galaxystagingservers.yml
R production/group_vars/galaxywebservers.yml
R production/group_vars/pulsarservers.yml
R production/group_vars/toolsheddbservers.yml
R production/group_vars/toolshedservers.yml
R production/host_vars/br005.bridges.psc.edu.yml
R production/host_vars/galaxy-web-01.tacc.utexas.edu.yml
R production/host_vars/galaxy-web-02.tacc.utexas.edu.yml
R production/host_vars/galaxy-web-03.tacc.utexas.edu.yml
R production/host_vars/galaxy-web-04.tacc.utexas.edu.yml
R production/host_vars/jetstream-iu0.galaxyproject.org.yml
R production/host_vars/jetstream-tacc0.galaxyproject.org.yml
R production/host_vars/login5.stampede.tacc.utexas.edu.yml
R production/host_vars/radegast.galaxyproject.org.yml
R production/inventory
R production/secret_vars/galaxydbservers.yml
R production/secret_vars/galaxyservers.yml
R production/secret_vars/pulsarservers.yml
R production/secret_vars/toolshedservers.yml
R stage/host_vars/radegast.galaxyproject.org.yml
R stage/inventory
R stage/secret_vars/toolshedservers.yml
R templates/galaxy/common/config/reports.ini.j2
R templates/galaxy/common/static/welcome.html.j2
R templates/galaxy/usegalaxy.org/config/build_sites.yml.j2
R templates/galaxy/usegalaxy.org/config/job_conf.xml.j2
R templates/galaxy/usegalaxy.org/config/reports.ini.j2
R templates/galaxy/usegalaxy.org/config/uwsgi.ini.j2
R templates/galaxy/usegalaxy.org/static
R templates/nginx/galaxy_bx.j2
R templates/nginx/usegalaxy.j2
R templates/nginx/usegalaxy_rewrites.conf.j2
R templates/nginx/usegalaxy_staging.j2
R templates/supervisor/galaxy.j2
R templates/supervisor/galaxy_group.j2
R templates/supervisor/galaxy_handler.j2
R templates/supervisor/galaxy_impersonate.j2
R templates/supervisor/galaxy_reports.j2
R tools.yml
R toolshed_infrastructure.yml
Log Message:
-----------
Reorganize Main and MTS for new playbook structure. Not deployed yet.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 9d48c34a095035bed26b724b767b7ee284b0dd69
https://github.com/galaxyproject/galaxy/commit/9d48c34a095035bed26b724b767b…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2017-05-09 (Tue, 09 May 2017)
Changed paths:
A test/functional/tools/collection_creates_dynamic_nested_fail.xml
A test/functional/tools/collection_creates_list_fail.xml
M test/functional/tools/samples_tool_conf.xml
Log Message:
-----------
Add some test tools for collection job failures.
xref #4032
These at least verify that jobs are properly failing whether they use dynamic dataset collection or not. In the case of pre-determinable list structures - they properly go red and expose the problems to the user (try running test/functional/tools/collection_creates_list_fail.xml manually). In the case of dynamic dataset collections - this does not occur though - all the resulting datasets are indeed green.
Commit: 96a219840c54b879838d4cf6c45dc96f76bfce54
https://github.com/galaxyproject/galaxy/commit/96a219840c54b879838d4cf6c45d…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-05-16 (Tue, 16 May 2017)
Changed paths:
M test/functional/tools/collection_creates_list_fail.xml
Log Message:
-----------
add indentation to for cycle content
Commit: ff30262cd2b8a851e31599b421f7a3acfd3f87d1
https://github.com/galaxyproject/galaxy/commit/ff30262cd2b8a851e31599b421f7…
Author: Nicola Soranzo <nsoranzo(a)tiscali.it>
Date: 2017-05-16 (Tue, 16 May 2017)
Changed paths:
A test/functional/tools/collection_creates_dynamic_nested_fail.xml
A test/functional/tools/collection_creates_list_fail.xml
M test/functional/tools/samples_tool_conf.xml
Log Message:
-----------
Merge pull request #4044 from jmchilton/collection_job_failure_tests
Add some test tools for collection job failures.
Compare: https://github.com/galaxyproject/galaxy/compare/6218e99fee2a...ff30262cd2b8
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: a00f7f65136418a55b0b6cb4aeec9553b186e30c
https://github.com/galaxyproject/galaxy/commit/a00f7f65136418a55b0b6cb4aeec…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
A client/galaxy/scripts/apps/admin.js
M client/galaxy/scripts/apps/analysis.js
R client/galaxy/scripts/apps/history-panel.js
A client/galaxy/scripts/apps/panels/admin-panel.js
A client/galaxy/scripts/apps/panels/history-panel.js
A client/galaxy/scripts/apps/panels/tool-panel.js
R client/galaxy/scripts/apps/tool-panel.js
M client/webpack.config.js
M lib/galaxy/web/base/controllers/admin.py
M lib/galaxy/webapps/galaxy/controllers/admin.py
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js
M static/scripts/bundled/login.bundled.js.map
Log Message:
-----------
Insert admin app, redirect controller
Commit: 6d19f595964403a9f6e65368ff644bafed6fc34c
https://github.com/galaxyproject/galaxy/commit/6d19f595964403a9f6e65368ff64…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js
M static/scripts/bundled/login.bundled.js.map
Log Message:
-----------
Prepare model structure for categories
Commit: ee676aef4251cca9f7edd9bcd18d059b0857fbbc
https://github.com/galaxyproject/galaxy/commit/ee676aef4251cca9f7edd9bcd18d…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M static/scripts/bundled/libs.bundled.js.map
Log Message:
-----------
Add tool shed related menu items
Commit: dcf177f2123b7bcb3996b1b2be0ce18b939afad8
https://github.com/galaxyproject/galaxy/commit/dcf177f2123b7bcb3996b1b2be0c…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M static/scripts/bundled/libs.bundled.js.map
Log Message:
-----------
Add all admin panel links
Commit: d131e1bd6cab451e97cf754c19eb1a19825a6dd8
https://github.com/galaxyproject/galaxy/commit/d131e1bd6cab451e97cf754c19eb…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M static/scripts/bundled/libs.bundled.js.map
Log Message:
-----------
Convert definitions into collection
Commit: b92099611c2199d55b6397a27f1bd93db975b02f
https://github.com/galaxyproject/galaxy/commit/b92099611c2199d55b6397a27f1b…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M static/scripts/bundled/libs.bundled.js.map
Log Message:
-----------
Remove debug statement
Commit: 25eb8850971520b367a272166521a6fa56e7b44c
https://github.com/galaxyproject/galaxy/commit/25eb8850971520b367a272166521…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M lib/galaxy/managers/configuration.py
M lib/galaxy/webapps/galaxy/controllers/admin.py
M static/scripts/bundled/libs.bundled.js.map
Log Message:
-----------
Add additional properties
Commit: e64c195ffc1b43c79baefcab42b9ae6906c0c804
https://github.com/galaxyproject/galaxy/commit/e64c195ffc1b43c79baefcab42b9…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M static/scripts/bundled/libs.bundled.js.map
Log Message:
-----------
Load initial page
Commit: 7de2b6b6ed6676b5cbe105e2970512506c89f77a
https://github.com/galaxyproject/galaxy/commit/7de2b6b6ed6676b5cbe105e29705…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M lib/galaxy/webapps/galaxy/controllers/admin.py
M static/scripts/bundled/libs.bundled.js.map
Log Message:
-----------
Add conditions and additional attributes
Commit: 2c3b4993cddea5f3a5d2e78a1e9bd6c4cc796283
https://github.com/galaxyproject/galaxy/commit/2c3b4993cddea5f3a5d2e78a1e9b…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
R templates/webapps/galaxy/admin/index.mako
Log Message:
-----------
Remove admin index mako
Commit: 0423dbc890fdfd67f6182c0ce825f43464e983f7
https://github.com/galaxyproject/galaxy/commit/0423dbc890fdfd67f6182c0ce825…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js
M static/scripts/bundled/login.bundled.js.map
Log Message:
-----------
Pack scripts
Commit: f01c20fc7de459f787cc9ef45e8812b18c3d7ff2
https://github.com/galaxyproject/galaxy/commit/f01c20fc7de459f787cc9ef45e88…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M client/galaxy/style/less/ui.less
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js
M static/scripts/bundled/login.bundled.js.map
M static/style/blue/base.css
Log Message:
-----------
Fix style
Commit: 866ddb4bcce355a36237762a34e68af863e87829
https://github.com/galaxyproject/galaxy/commit/866ddb4bcce355a36237762a34e6…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js
M static/scripts/bundled/login.bundled.js.map
Log Message:
-----------
Repack scripts
Commit: 8ab70efd00fb531659bad13066c79b599fb368f0
https://github.com/galaxyproject/galaxy/commit/8ab70efd00fb531659bad13066c7…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/style/less/ui.less
M static/style/blue/base.css
Log Message:
-----------
Fix style
Commit: b51da23c10c4673ba729ace4e2fad2afb49aa200
https://github.com/galaxyproject/galaxy/commit/b51da23c10c4673ba729ace4e2fa…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/style/less/ui.less
M static/style/blue/base.css
Log Message:
-----------
Remove unused css attribute
Commit: 2399df09cc20033ceb1e25c80ca257e4746f61da
https://github.com/galaxyproject/galaxy/commit/2399df09cc20033ceb1e25c80ca2…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/admin.js
M client/galaxy/scripts/layout/panel.js
M static/maps/layout/panel.js.map
M static/scripts/bundled/libs.bundled.js.map
Log Message:
-----------
Remove unused parts, comments
Commit: fe59e3aeb477a1a441287c49af918abea0aa5791
https://github.com/galaxyproject/galaxy/commit/fe59e3aeb477a1a441287c49af91…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M client/galaxy/style/less/ui.less
M static/scripts/bundled/libs.bundled.js.map
M static/style/blue/base.css
Log Message:
-----------
Fix overlapping css tags
Commit: d2f9cee31b8e6c9ca729e6e27575285d8a8e7c76
https://github.com/galaxyproject/galaxy/commit/d2f9cee31b8e6c9ca729e6e27575…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M lib/galaxy/webapps/galaxy/controllers/admin.py
Log Message:
-----------
Remove unused import
Commit: b2b84a8e62ecd6365c0f3cfdaa5df013bd5aac59
https://github.com/galaxyproject/galaxy/commit/b2b84a8e62ecd6365c0f3cfdaa5d…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/mvc/tours.js
M config/plugins/tours/core.history.yaml
M lib/galaxy/managers/datasets.py
M static/maps/mvc/tours.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/mvc/tours.js
M templates/show_params.mako
Log Message:
-----------
Merge branch 'dev' into admin_app
Commit: 5ece2f0a53c0721a39d49991dcdcd24f84ca3a61
https://github.com/galaxyproject/galaxy/commit/5ece2f0a53c0721a39d49991dcdc…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M client/galaxy/scripts/apps/admin.js
Log Message:
-----------
Remove spaces
Commit: a476db0253d601360b6d6db321c806586f52a507
https://github.com/galaxyproject/galaxy/commit/a476db0253d601360b6d6db321c8…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-16 (Tue, 16 May 2017)
Changed paths:
M client/galaxy/scripts/apps/admin.js
M client/galaxy/scripts/apps/panels/admin-panel.js
M lib/galaxy/web/base/controller.py
M static/scripts/bundled/libs.bundled.js.map
Log Message:
-----------
Add active view attribute, add monitoring ids
Commit: 220fff9e9bf6fb88977f0f2d8a08436d264b17ef
https://github.com/galaxyproject/galaxy/commit/220fff9e9bf6fb88977f0f2d8a08…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2017-05-16 (Tue, 16 May 2017)
Changed paths:
M client/galaxy/scripts/apps/panels/admin-panel.js
M static/scripts/bundled/libs.bundled.js.map
Log Message:
-----------
Add localization support for admin panel labels
Commit: fc69a85100bdfafe3f3106f7941205aaba64c01d
https://github.com/galaxyproject/galaxy/commit/fc69a85100bdfafe3f3106f79412…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-05-16 (Tue, 16 May 2017)
Changed paths:
M client/galaxy/scripts/nls/locale.js
M static/maps/nls/locale.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/nls/locale.js
Log Message:
-----------
add new translatable strings to the locale file
Commit: 6218e99fee2a813376855d12b1d9849c2d280ef8
https://github.com/galaxyproject/galaxy/commit/6218e99fee2a813376855d12b1d9…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-05-16 (Tue, 16 May 2017)
Changed paths:
A client/galaxy/scripts/apps/admin.js
M client/galaxy/scripts/apps/analysis.js
R client/galaxy/scripts/apps/history-panel.js
A client/galaxy/scripts/apps/panels/admin-panel.js
A client/galaxy/scripts/apps/panels/history-panel.js
A client/galaxy/scripts/apps/panels/tool-panel.js
R client/galaxy/scripts/apps/tool-panel.js
M client/galaxy/scripts/layout/panel.js
M client/galaxy/scripts/nls/locale.js
M client/galaxy/style/less/ui.less
M client/webpack.config.js
M lib/galaxy/managers/configuration.py
M lib/galaxy/web/base/controller.py
M lib/galaxy/web/base/controllers/admin.py
M lib/galaxy/webapps/galaxy/controllers/admin.py
M static/maps/layout/panel.js.map
M static/maps/mvc/tours.js.map
M static/maps/nls/locale.js.map
M static/scripts/bundled/analysis.bundled.js
M static/scripts/bundled/analysis.bundled.js.map
M static/scripts/bundled/libs.bundled.js
M static/scripts/bundled/libs.bundled.js.map
M static/scripts/bundled/login.bundled.js
M static/scripts/bundled/login.bundled.js.map
M static/scripts/mvc/tours.js
M static/scripts/nls/locale.js
M static/style/blue/base.css
R templates/webapps/galaxy/admin/index.mako
Log Message:
-----------
Merge pull request #4067 from guerler/admin_app
Add admin app
Compare: https://github.com/galaxyproject/galaxy/compare/3da8eb0d1384...6218e99fee2a
Branch: refs/heads/release_17.05
Home: https://github.com/galaxyproject/galaxy
Commit: 5e880815ade8756964017a446c6ceaa5cbb72f1a
https://github.com/galaxyproject/galaxy/commit/5e880815ade8756964017a446c6c…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2017-05-14 (Sun, 14 May 2017)
Changed paths:
M config/plugins/webhooks/demo/search/config/searchover.yaml
M config/plugins/webhooks/demo/tool_list/config/tool_list.yml
M test/functional/webhooks/trans_object/config/trans_object.yaml
Log Message:
-----------
Use galaxy.root by default
Commit: 88c0635ef70d8054b50dcbfae2788a9cfa7bd973
https://github.com/galaxyproject/galaxy/commit/88c0635ef70d8054b50dcbfae278…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2017-05-14 (Sun, 14 May 2017)
Changed paths:
M doc/source/admin/special_topics/webhooks.rst
Log Message:
-----------
Link has already rotted
Commit: 6dd145ed1a97263eb9cca42f26613e28b22f177d
https://github.com/galaxyproject/galaxy/commit/6dd145ed1a97263eb9cca42f2661…
Author: Eric Rasche <rasche.eric(a)gmail.com>
Date: 2017-05-14 (Sun, 14 May 2017)
Changed paths:
M doc/source/admin/special_topics/webhooks.rst
Log Message:
-----------
Try and document a bit
Commit: 6614e94a4953a8352515edded517d060cd6265c7
https://github.com/galaxyproject/galaxy/commit/6614e94a4953a8352515edded517…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2017-05-15 (Mon, 15 May 2017)
Changed paths:
M config/plugins/webhooks/demo/search/config/searchover.yaml
M config/plugins/webhooks/demo/tool_list/config/tool_list.yml
M doc/source/admin/special_topics/webhooks.rst
M test/functional/webhooks/trans_object/config/trans_object.yaml
Log Message:
-----------
Merge pull request #4065 from erasche/fix-4064
[17.05] Correct webhooks to use Galaxy.root and be compatible with proxy_prefix
Compare: https://github.com/galaxyproject/galaxy/compare/d3427a1344d1...6614e94a4953