May 2017 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] 00ff30: Remove message
by GitHub 10 May '17

10 May '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 00ff306a13bd25f59670a51a432a1b8711b3dfc4 https://github.com/galaxyproject/usegalaxy-playbook/commit/00ff306a13bd25f5… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M production/group_vars/galaxyservers.yml Log Message: ----------- Remove message

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[galaxyproject/galaxy] f792da: Minor fixes for new locales, rebuild of client.
by GitHub 10 May '17

10 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f792da1ce2ce6cab3f35541eab3feb3162b889ac https://github.com/galaxyproject/galaxy/commit/f792da1ce2ce6cab3f35541eab3f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M client/galaxy/scripts/nls/de/locale.js M client/galaxy/scripts/nls/es/locale.js M static/maps/layout/menu.js.map A static/maps/nls/de/locale.js.map A static/maps/nls/es/locale.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/locale.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js A static/scripts/nls/de/locale.js A static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/locale.js Log Message: ----------- Minor fixes for new locales, rebuild of client. Commit: 3c36af078f31de6fb2541aa410dff2dbe6ab380f https://github.com/galaxyproject/galaxy/commit/3c36af078f31de6fb2541aa410df… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- Some cleanup, rebuild. Commit: 70cc3ebb0882c55bf3cb2df03cb5392de92ac1b3 https://github.com/galaxyproject/galaxy/commit/70cc3ebb0882c55bf3cb2df03cb5… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2017-05-10 (Wed, 10 May 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/nls/de/locale.js M client/galaxy/scripts/nls/es/locale.js M static/maps/layout/menu.js.map A static/maps/nls/de/locale.js.map A static/maps/nls/es/locale.js.map M static/maps/nls/fr/locale.js.map M static/maps/nls/locale.js.map M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/layout/menu.js A static/scripts/nls/de/locale.js A static/scripts/nls/es/locale.js M static/scripts/nls/fr/locale.js M static/scripts/nls/locale.js Log Message: ----------- Merge pull request #4050 from dannon/locale_fixes Minor fixes for new locales, rebuild of client. Compare: https://github.com/galaxyproject/galaxy/compare/5e6f739fc1ec...70cc3ebb0882

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[galaxyproject/galaxy] cdd988: Add tooltip to sentences to translate
by GitHub 09 May '17

09 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: cdd988a68ddb19ddac96c89c1fcf156cbaab6e61 https://github.com/galaxyproject/galaxy/commit/cdd988a68ddb19ddac96c89c1fcf… Author: ValentinChCloud <chavaldranis(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/nls/locale.js Log Message: ----------- Add tooltip to sentences to translate Commit: 3f632aaa5f6376a05a8ee908ddec231f7fb81183 https://github.com/galaxyproject/galaxy/commit/3f632aaa5f6376a05a8ee908ddec… Author: ValentinChCloud <chavaldranis(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M client/galaxy/scripts/nls/fr/locale.js Log Message: ----------- Fr translation tooltip section Commit: 355966504cc7e3fe1a30d29087ce1b5be79a044c https://github.com/galaxyproject/galaxy/commit/355966504cc7e3fe1a30d29087ce… Author: ValentinChCloud <chavaldranis(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: A client/galaxy/scripts/nls/de/locale.js A client/galaxy/scripts/nls/es/locale.js Log Message: ----------- Deutsch and Spanish translation Commit: 5e6f739fc1ec249ec8a6e7b54200383ba1cd47b8 https://github.com/galaxyproject/galaxy/commit/5e6f739fc1ec249ec8a6e7b54200… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M client/galaxy/scripts/layout/menu.js A client/galaxy/scripts/nls/de/locale.js A client/galaxy/scripts/nls/es/locale.js M client/galaxy/scripts/nls/fr/locale.js M client/galaxy/scripts/nls/locale.js Log Message: ----------- Merge pull request #4045 from ValentinChCloud/dev Tooltip translation . Add Deutsch,Spanish Compare: https://github.com/galaxyproject/galaxy/compare/8acea3445019...5e6f739fc1ec

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[galaxyproject/usegalaxy-playbook] 69ea53: Swarm scale
by GitHub 09 May '17

09 May '17

Branch: refs/heads/reorg Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 69ea530df07aec1e85d8c40e50479db9f43e1630 https://github.com/galaxyproject/usegalaxy-playbook/commit/69ea530df07aec1e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M env/common/stack.yml R env/test/group_vars/galaxyswarmmanagers/vars.yml R env/test/group_vars/galaxyswarmmanagers/vault.yml A env/test/group_vars/galaxyswarmscaleservers/vars.yml A env/test/group_vars/galaxyswarmscaleservers/vault.yml M env/test/inventory A roles/usegalaxy_swarmscale/files/delete.yml A roles/usegalaxy_swarmscale/files/inc_spawn.yml A roles/usegalaxy_swarmscale/files/instance A roles/usegalaxy_swarmscale/files/inventory.head A roles/usegalaxy_swarmscale/files/inventory.spawn A roles/usegalaxy_swarmscale/files/spawn.yml A roles/usegalaxy_swarmscale/tasks/main.yml A roles/usegalaxy_swarmscale/templates/ssh_config.jetstream.j2 Log Message: ----------- Swarm scale

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[galaxyproject/usegalaxy-playbook] d982b0: Message for Main
by GitHub 09 May '17

09 May '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: d982b0e86e073930f362ef28f0660d69d5ccac22 https://github.com/galaxyproject/usegalaxy-playbook/commit/d982b0e86e073930… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M production/group_vars/galaxyservers.yml Log Message: ----------- Message for Main

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[galaxyproject/usegalaxy-playbook] 105127: 17.05 fixes for Jupyter on Main
by GitHub 09 May '17

09 May '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 10512706c236c3dcacbbd14c5ea96c4ed357c591 https://github.com/galaxyproject/usegalaxy-playbook/commit/10512706c236c3dc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M production/group_vars/galaxywebservers.yml M templates/nginx/usegalaxy.j2 Log Message: ----------- 17.05 fixes for Jupyter on Main

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[galaxyproject/usegalaxy-playbook] c034a0: Fix FTP on Test and enable PBKDF2.
by GitHub 09 May '17

09 May '17

Branch: refs/heads/reorg Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: c034a067b23940feee7d32f63abfed6e375077a0 https://github.com/galaxyproject/usegalaxy-playbook/commit/c034a067b23940fe… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M env/test/group_vars/ftpservers.yml M env/test/group_vars/galaxyservers/vars.yml M roles/galaxyprojectdotorg.proftpd/tasks/galaxy_auth.yml M roles/galaxyprojectdotorg.proftpd/templates/galaxy_auth.conf.j2 Log Message: ----------- Fix FTP on Test and enable PBKDF2.

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[galaxyproject/usegalaxy-playbook] dd1df6: Increase extract maf blocks to 16GB
by GitHub 09 May '17

09 May '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: dd1df620bf43bfa0cb0c83258f93bd20eea621ba https://github.com/galaxyproject/usegalaxy-playbook/commit/dd1df620bf43bfa0… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-05-09 (Tue, 09 May 2017) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Increase extract maf blocks to 16GB

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[galaxyproject/galaxy] 614d03: Add test case clarifying datasets do get "renamed"...
by GitHub 08 May '17

08 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 614d032f1254b5bf5032c4c3ddcecfeba6d1eea7 https://github.com/galaxyproject/galaxy/commit/614d032f1254b5bf5032c4c3ddce… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-04-27 (Thu, 27 Apr 2017) Changed paths: M test/api/test_workflows.py Log Message: ----------- Add test case clarifying datasets do get "renamed" by rename PJA in collections. xref #1675 This is of limited utility since we don't really expose the name - and intentionally so. Related open bugs/enhancements that still need to be addressed are: - Applying rename to the collection (in addition to the elements) - #1680. - Download of collection elements with element identifier instead of the name: #2023 / #2140. Commit: 8acea3445019f0b69006fa48f4172bf08bdaa257 https://github.com/galaxyproject/galaxy/commit/8acea3445019f0b69006fa48f417… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-08 (Mon, 08 May 2017) Changed paths: M test/api/test_workflows.py Log Message: ----------- Merge pull request #3983 from jmchilton/collection_rename Add test case clarifying datasets do get "renamed" by rename PJA in collections. Compare: https://github.com/galaxyproject/galaxy/compare/baa85bf78886...8acea3445019

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[galaxyproject/galaxy] 5ba5e8: One more fix for main_panel fix in #3992.
by GitHub 08 May '17

08 May '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5ba5e8a85fde38524a28cc907a894a8e9ada9c7e https://github.com/galaxyproject/galaxy/commit/5ba5e8a85fde38524a28cc907a89… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-05-08 (Mon, 08 May 2017) Changed paths: M test/selenium_tests/test_tool_form.py Log Message: ----------- One more fix for main_panel fix in #3992. See #4003 / d09ba53c8e4e51645ae2c37387493bfd2511196b for similar fix to other tests and more information. Commit: baa85bf788860171159593efdf1941a666324f5b https://github.com/galaxyproject/galaxy/commit/baa85bf788860171159593efdf19… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-05-08 (Mon, 08 May 2017) Changed paths: M test/selenium_tests/test_tool_form.py Log Message: ----------- Merge pull request #4042 from jmchilton/selenium_fixes_12 One more fix for main_panel fix in #3992. Compare: https://github.com/galaxyproject/galaxy/compare/80e2866bbcdd...baa85bf78886

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