April 2018 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] f118c5: Hide/uninstall bad snpeff versions, update snpsift...
by GitHub 19 Apr '18

19 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: f118c5fd4327c204929932c04d9b3d01160b0532 https://github.com/galaxyproject/usegalaxy-playbook/commit/f118c5fd4327c204… Author: Dave B <dave(a)bx.psu.edu> Date: 2018-04-19 (Thu, 19 Apr 2018) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Hide/uninstall bad snpeff versions, update snpsift.

1 0

[galaxyproject/galaxy] 6c020a: Fix uploads of link-only datasets to data library
by GitHub 19 Apr '18

19 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6c020a6dbcde225ebecde45ce72a816c1d1e8f7c https://github.com/galaxyproject/galaxy/commit/6c020a6dbcde225ebecde45ce72a… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-04-19 (Thu, 19 Apr 2018) Changed paths: M tools/data_source/upload.py Log Message: ----------- Fix uploads of link-only datasets to data library `ext` was never being set in the case of link only datasets, where I think the right thing is to fall back on `dataset.file_type`. Fixes https://github.com/galaxyproject/galaxy/issues/5915. Commit: 2e18ed2c9794405706a713ac08fc1dd769391bdf https://github.com/galaxyproject/galaxy/commit/2e18ed2c9794405706a713ac08fc… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2018-04-19 (Thu, 19 Apr 2018) Changed paths: M tools/data_source/upload.py Log Message: ----------- Set ext explicitly to dataset.file_type since it is being used again later. Thanks @nsoranzo! Commit: 43c418053c65f0ea7ecf840da3a38e080a4ebe85 https://github.com/galaxyproject/galaxy/commit/43c418053c65f0ea7ecf840da3a3… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-04-19 (Thu, 19 Apr 2018) Changed paths: M tools/data_source/upload.py Log Message: ----------- Merge pull request #5917 from mvdbeek/fix_link_only_add_datasets Fix uploads of link-only datasets to data library Compare: https://github.com/galaxyproject/galaxy/compare/a22d7c3d9aaa...43c418053c65

1 0

[galaxyproject/galaxy] 20f47b: Hack to fix Git in node container.
by GitHub 18 Apr '18

18 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 20f47b2aa64946da3890a6c51ae6a94f8e6c37fa https://github.com/galaxyproject/galaxy/commit/20f47b2aa64946da3890a6c51ae6… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M .ci/jenkins/selenium/run_tests.sh Log Message: ----------- Hack to fix Git in node container. Fixes https://github.com/galaxyproject/galaxy/issues/5912 maybe - who knows. Commit: a22d7c3d9aaabb9c6db535c2201df18090e34e6d https://github.com/galaxyproject/galaxy/commit/a22d7c3d9aaabb9c6db535c2201d… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M .ci/jenkins/selenium/run_tests.sh Log Message: ----------- Merge pull request #5913 from jmchilton/node_container_fix Hack to fix Git in node container. Compare: https://github.com/galaxyproject/galaxy/compare/e922a95297a8...a22d7c3d9aaa

1 0

[galaxyproject/galaxy] ae6fbd: Use random password generation function of user cl...
by GitHub 18 Apr '18

18 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ae6fbd6f75b460cd0e41f644a03bb9f4cff468ff https://github.com/galaxyproject/galaxy/commit/ae6fbd6f75b460cd0e41f644a03b… Author: vjalili <jalili.vahid(a)gmail.com> Date: 2018-04-17 (Tue, 17 Apr 2018) Changed paths: M lib/galaxy/web/framework/webapp.py Log Message: ----------- Use random password generation function of user class. Commit: e922a95297a82e66cc3d360afaf68c303ca87267 https://github.com/galaxyproject/galaxy/commit/e922a95297a82e66cc3d360afaf6… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M lib/galaxy/web/framework/webapp.py Log Message: ----------- Merge pull request #5904 from VJalili/rndpassword Use random password generation function of user class ... Compare: https://github.com/galaxyproject/galaxy/compare/3c99c546070c...e922a95297a8

1 0

[galaxyproject/usegalaxy-playbook] a56a4b: Remove downtime banner
by GitHub 18 Apr '18

18 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: a56a4b13db94058bc3825d7febbd4834e67d9339 https://github.com/galaxyproject/usegalaxy-playbook/commit/a56a4b13db94058b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-17 (Tue, 17 Apr 2018) Changed paths: M env/main/group_vars/galaxyservers/vars.yml Log Message: ----------- Remove downtime banner Commit: 7d4e3c0a2f2ef1b03abe60ff232ca4e70f2e22fd https://github.com/galaxyproject/usegalaxy-playbook/commit/7d4e3c0a2f2ef1b0… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M env/test/files/galaxy/var/integrated_tool_panel.xml M env/test/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Merge branch 'master' of github.com:/galaxyproject/usegalaxy-playbook Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/2e8637f67c84...…

1 0

[galaxyproject/galaxy] 013a0c: This fixes display of the tour index names -- prev...
by GitHub 18 Apr '18

18 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 013a0cbc5570341f9a47be7ac39feecb9ec86e33 https://github.com/galaxyproject/galaxy/commit/013a0cbc5570341f9a47be7ac39f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-04-17 (Tue, 17 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/tours.js Log Message: ----------- This fixes display of the tour index names -- previously unnoticed since the id was displaying fine as the fallback. Commit: 3c99c546070c33498dce6ed4d7c592eb059ef748 https://github.com/galaxyproject/galaxy/commit/3c99c546070c33498dce6ed4d7c5… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/tours.js Log Message: ----------- Merge pull request #5900 from dannon/fix_tour_index_names This fixes display of the tour index names -- previously unnoticed since Compare: https://github.com/galaxyproject/galaxy/compare/04ad5cf47dd8...3c99c546070c

1 0

[galaxyproject/galaxy] 3302b4: remove deprecated feature, deprecate method, link ...
by GitHub 18 Apr '18

18 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3302b46775cdc76976a4bdc36353e014c6d5edbd https://github.com/galaxyproject/galaxy/commit/3302b46775cdc76976a4bdc36353… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M lib/galaxy/web/base/controller.py Log Message: ----------- remove deprecated feature, deprecate method, link to preferred implementation Commit: 04ad5cf47dd8af5763af2b30465beeaf07692d49 https://github.com/galaxyproject/galaxy/commit/04ad5cf47dd8af5763af2b30465b… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M lib/galaxy/web/base/controller.py Log Message: ----------- Merge pull request #5887 from martenson/remove-intid remove deprecated feature, deprecate method, link to preferred impl. Compare: https://github.com/galaxyproject/galaxy/compare/2829a1f1646b...04ad5cf47dd8

1 0

[galaxyproject/galaxy] 8261a2: Make the startup scripts play just as nicely with ...
by GitHub 18 Apr '18

18 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8261a2398a7981e77be056bae0e3c15f3a097a85 https://github.com/galaxyproject/galaxy/commit/8261a2398a7981e77be056bae0e3… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-04 (Wed, 04 Apr 2018) Changed paths: M create_db.sh M doc/source/admin/framework_dependencies.rst M extract_dataset_parts.sh M manage_db.sh M run_tests.sh M scripts/common_startup.sh M scripts/common_startup_functions.sh Log Message: ----------- Make the startup scripts play just as nicely with Conda as they do with virtualenv. Commit: a88e19064a38415d867f4c118dd6938d8e368632 https://github.com/galaxyproject/galaxy/commit/a88e19064a38415d867f4c118dd6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-04 (Wed, 04 Apr 2018) Changed paths: M config/galaxy.yml.sample M scripts/get_uwsgi_args.py Log Message: ----------- Don't set uWSGI's virtualenv option when running from Conda Commit: b3eff87a1ba0ec0f07c69045f2b279cab8476a7b https://github.com/galaxyproject/galaxy/commit/b3eff87a1ba0ec0f07c69045f2b2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-04 (Wed, 04 Apr 2018) Changed paths: M lib/galaxy/dependencies/conda-file.sh M scripts/common_startup.sh M scripts/common_startup_functions.sh Log Message: ----------- Clean up and useability enhancements Commit: c5262e8971679bd431cb0238391f0ec7d5ba087e https://github.com/galaxyproject/galaxy/commit/c5262e8971679bd431cb0238391f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-04 (Wed, 04 Apr 2018) Changed paths: M scripts/common_startup.sh Log Message: ----------- Look for both `base` and `root` conda envs Commit: 2829a1f1646b2ba85faf986b56799daccafb1060 https://github.com/galaxyproject/galaxy/commit/2829a1f1646b2ba85faf986b5679… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M config/galaxy.yml.sample M create_db.sh M doc/source/admin/framework_dependencies.rst M extract_dataset_parts.sh M lib/galaxy/dependencies/conda-file.sh M manage_db.sh M run_tests.sh M scripts/common_startup.sh M scripts/common_startup_functions.sh M scripts/get_uwsgi_args.py Log Message: ----------- Merge pull request #5854 from natefoo/run-scripts-conda Improve startup interoperability with Conda Compare: https://github.com/galaxyproject/galaxy/compare/65d4aff437d0...2829a1f1646b

1 0

[galaxyproject/galaxy] 7d7322: add link that explains quota management to quota i...
by GitHub 18 Apr '18

18 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 7d73220c539f5803e5663c5d65218316a03bc375 https://github.com/galaxyproject/galaxy/commit/7d73220c539f5803e5663c5d6521… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-03-30 (Fri, 30 Mar 2018) Changed paths: M client/galaxy/scripts/mvc/user/user-quotameter.js Log Message: ----------- add link that explains quota management to quota indicator Commit: 65d4aff437d03f5c1dae9f9fe4646426a1fe9e35 https://github.com/galaxyproject/galaxy/commit/65d4aff437d03f5c1dae9f9fe464… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/user/user-quotameter.js Log Message: ----------- Merge pull request #5811 from martenson/quota-meter add link that explains quota management to quota indicator Compare: https://github.com/galaxyproject/galaxy/compare/1c433d7d041d...65d4aff437d0

1 0

[galaxyproject/galaxy] 8833d1: add security announcement to the rn
by GitHub 18 Apr '18

18 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8833d1a8a49d7b6d4a9c849b0335d3260564b351 https://github.com/galaxyproject/galaxy/commit/8833d1a8a49d7b6d4a9c849b0335… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-03-13 (Tue, 13 Mar 2018) Changed paths: M doc/source/releases/18.01_announce.rst Log Message: ----------- add security announcement to the rn Commit: e89290c33031d89365aa3ef3b6e4720d68390119 https://github.com/galaxyproject/galaxy/commit/e89290c33031d89365aa3ef3b6e4… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2018-03-18 (Sun, 18 Mar 2018) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/test/test.rds A lib/galaxy/datatypes/test/test.sce A lib/galaxy/datatypes/test/test_error.rds Log Message: ----------- sniffers, test cases Commit: b0effc107af2bba7c0dfefbd7c5861a1597c9099 https://github.com/galaxyproject/galaxy/commit/b0effc107af2bba7c0dfefbd7c58… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2018-03-19 (Mon, 19 Mar 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- fix to class test Commit: ea993a8912b870de7780c68c003c5433badb469d https://github.com/galaxyproject/galaxy/commit/ea993a8912b870de7780c68c003c… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2018-03-19 (Mon, 19 Mar 2018) Changed paths: M lib/galaxy/dependencies/pipfiles/develop/pinned-requirements.txt Log Message: ----------- rpy2 library for loading/testing R objects Commit: 1d2a0117199bc902896ca97cf5e5aa5b9b20b132 https://github.com/galaxyproject/galaxy/commit/1d2a0117199bc902896ca97cf5e5… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2018-03-19 (Mon, 19 Mar 2018) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- linting fix Commit: a280211ca65ca88b3a7cd92d0d3c1d15b874d462 https://github.com/galaxyproject/galaxy/commit/a280211ca65ca88b3a7cd92d0d3c… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2018-04-13 (Fri, 13 Apr 2018) Log Message: ----------- Merge branch 'master' of github.com:galaxyproject/galaxy into singlecellobject Commit: d31c05a67d40daa12fc3a2dbcdea35d1971d0e3d https://github.com/galaxyproject/galaxy/commit/d31c05a67d40daa12fc3a2dbcdea… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/binary.py M lib/galaxy/dependencies/pipfiles/develop/pinned-requirements.txt Log Message: ----------- removed sniffers, removed pinned, removed classes Commit: 695ed3ac68d9f690f649b7e57c1bdf4625cc20fe https://github.com/galaxyproject/galaxy/commit/695ed3ac68d9f690f649b7e57c1b… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: R lib/galaxy/datatypes/test/test.rds R lib/galaxy/datatypes/test/test.sce R lib/galaxy/datatypes/test/test_error.rds Log Message: ----------- removed test data Commit: d5cb6f636b19128ce64934fbae91a82e21d4c668 https://github.com/galaxyproject/galaxy/commit/d5cb6f636b19128ce64934fbae91… Author: Mehmet Tekman <m.tekman(a)ucl.ac.uk> Date: 2018-04-14 (Sat, 14 Apr 2018) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- renamed type Commit: 8baea1f7c7551920bc2318b34247a29462a4e035 https://github.com/galaxyproject/galaxy/commit/8baea1f7c7551920bc2318b34247… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M .ci/flake8_blacklist.txt M .gitignore M CONTRIBUTING.md M Makefile M README.rst M client/.babelrc M client/GruntFile.js M client/README.md M client/bower.json A client/galaxy/docs/bootstrap.md A client/galaxy/docs/galaxy-styles.md M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/components/Citations.vue M client/galaxy/scripts/components/HistoryImport.vue M client/galaxy/scripts/components/HistoryView.vue A client/galaxy/scripts/components/PluginList.vue A client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/components/admin/DataTablesGrid.vue A client/galaxy/scripts/layout/communication-server-view.js R client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/legacy/grid/grid-view.js R client/galaxy/scripts/libs/bootstrap-tour.js R client/galaxy/scripts/libs/bootstrap.js A client/galaxy/scripts/mocha/test.js A client/galaxy/scripts/mocha/tests/rules_dsl_spec.yml A client/galaxy/scripts/mocha/tests/rules_tests.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/collection/pair-collection-creator.js M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js M client/galaxy/scripts/mvc/dataset/dataset-error.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/form/form-wrapper.js M client/galaxy/scripts/mvc/grid/grid-model.js M client/galaxy/scripts/mvc/grid/grid-shared.js M client/galaxy/scripts/mvc/grid/grid-template.js M client/galaxy/scripts/mvc/grid/grid-view.js M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/scripts/mvc/history/history-item-li.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/history-view-edit.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/history/job-states-model.js M client/galaxy/scripts/mvc/history/multi-panel.js M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folder-view.js M client/galaxy/scripts/mvc/library/library-folderlist-view.js M client/galaxy/scripts/mvc/library/library-folderrow-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-library-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M client/galaxy/scripts/mvc/library/library-libraryrow-view.js M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js M client/galaxy/scripts/mvc/list/list-view.js A client/galaxy/scripts/mvc/rules/rule-definitions.js M client/galaxy/scripts/mvc/tag.js M client/galaxy/scripts/mvc/tool/tool-form-composite.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/mvc/tours.js M client/galaxy/scripts/mvc/ui/error-modal.js M client/galaxy/scripts/mvc/ui/ui-buttons.js M client/galaxy/scripts/mvc/ui/ui-frames.js M client/galaxy/scripts/mvc/ui/ui-misc.js M client/galaxy/scripts/mvc/ui/ui-options.js M client/galaxy/scripts/mvc/ui/ui-popover.js M client/galaxy/scripts/mvc/ui/ui-portlet.js M client/galaxy/scripts/mvc/ui/ui-select-content.js M client/galaxy/scripts/mvc/ui/ui-select-default.js M client/galaxy/scripts/mvc/ui/ui-slider.js M client/galaxy/scripts/mvc/ui/ui-tabs.js M client/galaxy/scripts/mvc/ui/ui-thumbnails.js A client/galaxy/scripts/mvc/upload/collection/rules-input-view.js M client/galaxy/scripts/mvc/upload/default/default-row.js M client/galaxy/scripts/mvc/upload/default/default-view.js M client/galaxy/scripts/mvc/upload/upload-ftp.js A client/galaxy/scripts/mvc/upload/upload-utils.js M client/galaxy/scripts/mvc/upload/upload-view.js M client/galaxy/scripts/mvc/user/user-custom-builds.js M client/galaxy/scripts/mvc/user/user-preferences.js M client/galaxy/scripts/mvc/visualization/chart/components/model.js M client/galaxy/scripts/mvc/visualization/chart/utilities/datasets.js M client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js M client/galaxy/scripts/mvc/visualization/chart/views/groups.js M client/galaxy/scripts/mvc/visualization/chart/views/menu.js M client/galaxy/scripts/mvc/visualization/chart/views/viewer.js M client/galaxy/scripts/mvc/visualization/visualization-model.js R client/galaxy/scripts/mvc/visualization/visualization-view.js M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-manager.js M client/galaxy/scripts/mvc/workflow/workflow-view-node.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view.js M client/galaxy/scripts/mvc/workflow/workflow.js M client/galaxy/scripts/qunit/test-app.js M client/galaxy/scripts/qunit/tests/form_tests.js M client/galaxy/scripts/qunit/tests/masthead_tests.js M client/galaxy/scripts/qunit/tests/ui_tests.js M client/galaxy/scripts/toolshed/groups/group-detail-view.js M client/galaxy/scripts/toolshed/groups/group-list-view.js M client/galaxy/scripts/ui/filter-control.js M client/galaxy/scripts/ui/pagination.js M client/galaxy/scripts/ui/peek-column-selector.js M client/galaxy/scripts/utils/utils.js M client/galaxy/scripts/viz/circster.js M client/galaxy/scripts/viz/sweepster.js M client/galaxy/scripts/viz/trackster.js M client/galaxy/scripts/viz/trackster/tracks.js R client/galaxy/style/less/autocomplete_tagging.less R client/galaxy/style/less/base.less R client/galaxy/style/less/bootstrap.less R client/galaxy/style/less/bootstrap/alerts.less R client/galaxy/style/less/bootstrap/badges.less R client/galaxy/style/less/bootstrap/bootstrap.less R client/galaxy/style/less/bootstrap/breadcrumbs.less R client/galaxy/style/less/bootstrap/button-groups.less R client/galaxy/style/less/bootstrap/buttons.less R client/galaxy/style/less/bootstrap/carousel.less R client/galaxy/style/less/bootstrap/close.less R client/galaxy/style/less/bootstrap/code.less R client/galaxy/style/less/bootstrap/component-animations.less R client/galaxy/style/less/bootstrap/dropdowns.less R client/galaxy/style/less/bootstrap/forms.less R client/galaxy/style/less/bootstrap/glyphicons.less R client/galaxy/style/less/bootstrap/grid.less R client/galaxy/style/less/bootstrap/input-groups.less R client/galaxy/style/less/bootstrap/jumbotron.less R client/galaxy/style/less/bootstrap/labels.less R client/galaxy/style/less/bootstrap/list-group.less R client/galaxy/style/less/bootstrap/media.less R client/galaxy/style/less/bootstrap/mixins.less R client/galaxy/style/less/bootstrap/modals.less R client/galaxy/style/less/bootstrap/navbar.less R client/galaxy/style/less/bootstrap/navs.less R client/galaxy/style/less/bootstrap/normalize.less R client/galaxy/style/less/bootstrap/pager.less R client/galaxy/style/less/bootstrap/pagination.less R client/galaxy/style/less/bootstrap/panels.less R client/galaxy/style/less/bootstrap/popovers.less R client/galaxy/style/less/bootstrap/print.less R client/galaxy/style/less/bootstrap/progress-bars.less R client/galaxy/style/less/bootstrap/responsive-utilities.less R client/galaxy/style/less/bootstrap/scaffolding.less R client/galaxy/style/less/bootstrap/tables.less R client/galaxy/style/less/bootstrap/theme.less R client/galaxy/style/less/bootstrap/thumbnails.less R client/galaxy/style/less/bootstrap/tooltip.less R client/galaxy/style/less/bootstrap/type.less R client/galaxy/style/less/bootstrap/utilities.less R client/galaxy/style/less/bootstrap/variables.less R client/galaxy/style/less/bootstrap/wells.less R client/galaxy/style/less/charts.less R client/galaxy/style/less/circster.less R client/galaxy/style/less/collection.less R client/galaxy/style/less/dataset.less R client/galaxy/style/less/embed_item.less R client/galaxy/style/less/flex.less R client/galaxy/style/less/fontawesome/bordered-pulled.less R client/galaxy/style/less/fontawesome/core.less R client/galaxy/style/less/fontawesome/fixed-width.less R client/galaxy/style/less/fontawesome/font-awesome.less R client/galaxy/style/less/fontawesome/icons.less R client/galaxy/style/less/fontawesome/larger.less R client/galaxy/style/less/fontawesome/list.less R client/galaxy/style/less/fontawesome/mixins.less R client/galaxy/style/less/fontawesome/path.less R client/galaxy/style/less/fontawesome/rotated-flipped.less R client/galaxy/style/less/fontawesome/spinning.less R client/galaxy/style/less/fontawesome/stacked.less R client/galaxy/style/less/fontawesome/variables.less R client/galaxy/style/less/frame.less R client/galaxy/style/less/galaxy_bootstrap.less R client/galaxy/style/less/galaxy_bootstrap/overrides.less R client/galaxy/style/less/galaxy_bootstrap/variables.less R client/galaxy/style/less/galaxy_variables.less R client/galaxy/style/less/history.less R client/galaxy/style/less/iconic_stroke.less R client/galaxy/style/less/job.less R client/galaxy/style/less/jstree.less R client/galaxy/style/less/library.less R client/galaxy/style/less/list-item.less R client/galaxy/style/less/reports.less R client/galaxy/style/less/select2.less R client/galaxy/style/less/theme/blue.less R client/galaxy/style/less/theme/plain.less R client/galaxy/style/less/toastr.less R client/galaxy/style/less/tour.less R client/galaxy/style/less/trackster.less R client/galaxy/style/less/ui.less R client/galaxy/style/less/ui/dataset-choice.less R client/galaxy/style/less/ui/error-modal.less R client/galaxy/style/less/ui/icon-btn.less R client/galaxy/style/less/ui/pagination.less R client/galaxy/style/less/ui/paired-collection-creator.less R client/galaxy/style/less/ui/peek-column-selector.less R client/galaxy/style/less/ui/search-input.less R client/galaxy/style/less/upload.less A client/galaxy/style/scss/autocomplete_tagging.scss A client/galaxy/style/scss/base.scss A client/galaxy/style/scss/charts.scss A client/galaxy/style/scss/circster.scss A client/galaxy/style/scss/collection.scss A client/galaxy/style/scss/dataset.scss A client/galaxy/style/scss/embed_item.scss A client/galaxy/style/scss/flex.scss A client/galaxy/style/scss/frame.scss A client/galaxy/style/scss/galaxy_bootstrap/overrides.scss A client/galaxy/style/scss/galaxy_bootstrap/variables.scss A client/galaxy/style/scss/galaxy_variables.scss A client/galaxy/style/scss/history.scss A client/galaxy/style/scss/iconic_stroke.scss A client/galaxy/style/scss/job.scss A client/galaxy/style/scss/jstree.scss A client/galaxy/style/scss/library.scss A client/galaxy/style/scss/list-item.scss A client/galaxy/style/scss/reports.scss A client/galaxy/style/scss/select2.scss A client/galaxy/style/scss/theme/blue.scss A client/galaxy/style/scss/theme/plain.scss A client/galaxy/style/scss/toastr.scss A client/galaxy/style/scss/tour.scss A client/galaxy/style/scss/trackster.scss A client/galaxy/style/scss/ui.scss A client/galaxy/style/scss/ui/dataset-choice.scss A client/galaxy/style/scss/ui/error-modal.scss A client/galaxy/style/scss/ui/icon-btn.scss A client/galaxy/style/scss/ui/pagination.scss A client/galaxy/style/scss/ui/paired-collection-creator.scss A client/galaxy/style/scss/ui/peek-column-selector.scss A client/galaxy/style/scss/ui/search-input.scss A client/galaxy/style/scss/upload.scss R client/grunt-tasks/style.js M client/gulpfile.js M client/karma.config.js M client/package.json A client/styleguide.config.js M client/webpack.config.js M client/yarn.lock M config/containers_conf.yml.sample M config/datatypes_conf.xml.sample M config/galaxy.yml.sample M config/job_conf.xml.sample_advanced A config/oidc_backends_config.xml.sample A config/oidc_config.xml.sample M config/plugins/interactive_environments/common/templates/ie.mako M config/plugins/tours/core.scratchbook.yaml M config/plugins/visualizations/common/templates/chart_entry_point.mako M config/plugins/visualizations/csg/config/csg.xml A config/plugins/visualizations/csg/static/logo.png M config/plugins/visualizations/csg/templates/csg.mako M config/plugins/visualizations/cytoscape/config/cytoscape.xml M config/plugins/visualizations/drawrna/config/drawrna.xml M config/plugins/visualizations/example/config/example.xml M config/plugins/visualizations/graphviz/config/graphviz.xml M config/plugins/visualizations/graphviz/templates/graphviz.mako M config/plugins/visualizations/heatmap/heatmap_cluster/config/heatmap_cluster.xml M config/plugins/visualizations/heatmap/heatmap_default/config/heatmap_default.xml M config/plugins/visualizations/heatmap/heatmap_default/config/heatmap_shared.xml A config/plugins/visualizations/hivtrace/config/hivtrace.xml A config/plugins/visualizations/hivtrace/static/448c34a56d699c29117adc64c43affeb.woff2 A config/plugins/visualizations/hivtrace/static/674f50d287a8c48dc19ba404d20fe713.eot A config/plugins/visualizations/hivtrace/static/89889688147bd7575d6327160d64e760.svg A config/plugins/visualizations/hivtrace/static/912ec66d7572ff821749319396470bde.svg A config/plugins/visualizations/hivtrace/static/af7ae505a9eed503f8b8e6982036873e.woff2 A config/plugins/visualizations/hivtrace/static/b06871f281fee6b241d60582ae9369b9.ttf A config/plugins/visualizations/hivtrace/static/e18bbf611f2a2e43afc071aa2f4e1512.ttf A config/plugins/visualizations/hivtrace/static/f4769f9bdb7466be65088239c12046d1.eot A config/plugins/visualizations/hivtrace/static/fa2772327f55d8198301fdb8bcfc8158.woff A config/plugins/visualizations/hivtrace/static/fee66e712a8a08eef5805a46892932ad.woff A config/plugins/visualizations/hivtrace/static/hivtrace.css A config/plugins/visualizations/hivtrace/static/hivtrace.css.map A config/plugins/visualizations/hivtrace/static/hivtrace.js A config/plugins/visualizations/hivtrace/static/hivtrace.js.map A config/plugins/visualizations/hivtrace/static/logo.png A config/plugins/visualizations/hivtrace/static/vendor.js A config/plugins/visualizations/hivtrace/static/vendor.js.map A config/plugins/visualizations/hivtrace/templates/index.mako M config/plugins/visualizations/jqplot/jqplot_bar/config/jqplot_bar.xml M config/plugins/visualizations/jqplot/jqplot_box/config/jqplot_box.xml M config/plugins/visualizations/jqplot/jqplot_histogram/config/jqplot_histogram.xml M config/plugins/visualizations/jqplot/jqplot_line/config/jqplot_line.xml M config/plugins/visualizations/jqplot/jqplot_scatter/config/jqplot_scatter.xml M config/plugins/visualizations/msa/config/msa.xml M config/plugins/visualizations/msa/static/script.js M config/plugins/visualizations/ngl/config/ngl.xml M config/plugins/visualizations/nvd3/nvd3_bar/config/nvd3_bar.xml M config/plugins/visualizations/nvd3/nvd3_bar/src/nvd3.js M config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js M config/plugins/visualizations/nvd3/nvd3_bar_stacked/config/nvd3_bar_stacked.xml M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml M config/plugins/visualizations/nvd3/nvd3_horizontal/config/nvd3_horizontal.xml M config/plugins/visualizations/nvd3/nvd3_horizontal_stacked/config/nvd3_horizontal_stacked.xml M config/plugins/visualizations/nvd3/nvd3_line/config/nvd3_line.xml M config/plugins/visualizations/nvd3/nvd3_line_focus/config/nvd3_line_focus.xml M config/plugins/visualizations/nvd3/nvd3_pie/config/nvd3_pie.xml M config/plugins/visualizations/nvd3/nvd3_scatter/config/nvd3_scatter.xml M config/plugins/visualizations/nvd3/nvd3_stackedarea/config/nvd3_stackedarea.xml M config/plugins/visualizations/nvd3/nvd3_stackedarea_full/config/nvd3_stackedarea_full.xml M config/plugins/visualizations/nvd3/nvd3_stackedarea_stream/config/nvd3_stackedarea_stream.xml M config/plugins/visualizations/phylocanvas/config/phylocanvas.xml M config/plugins/visualizations/phyloviz/config/phyloviz.xml A config/plugins/visualizations/phyloviz/static/logo.png M config/plugins/visualizations/pv/config/pv.xml A config/plugins/visualizations/scatterplot/.babelrc M config/plugins/visualizations/scatterplot/package.json A config/plugins/visualizations/scatterplot/src/jqglobals.js M config/plugins/visualizations/scatterplot/src/scatterplot.js A config/plugins/visualizations/scatterplot/static/logo.png M config/plugins/visualizations/scatterplot/static/scatterplot.js M config/plugins/visualizations/scatterplot/templates/scatterplot.mako M config/plugins/visualizations/trackster/config/trackster.xml A config/plugins/visualizations/trackster/static/logo.png M config/plugins/visualizations/unipept/config/unipept.xml M config/plugins/visualizations/unipept/templates/unipept.mako M config/plugins/visualizations/venn/config/venn.xml M config/plugins/visualizations/venn/src/script.js M config/plugins/visualizations/venn/static/script.js M config/reports.yml.sample M config/tool_conf.xml.main M config/tool_conf.xml.sample M config/tool_shed.yml.sample A config/workflow_resource_mapper_conf.yml.sample A config/workflow_resource_params_conf.xml.sample M doc/source/admin/authentication.md M doc/source/admin/cluster.md M doc/source/admin/galaxy_options.rst M doc/source/admin/nginx.md M doc/source/admin/scaling.md M doc/source/releases/18.01_announce.rst M lib/galaxy/app.py M lib/galaxy/auth/providers/ldap_ad.py A lib/galaxy/authnz/__init__.py A lib/galaxy/authnz/managers.py A lib/galaxy/authnz/psa_authnz.py M lib/galaxy/config.py M lib/galaxy/containers/__init__.py M lib/galaxy/containers/docker.py M lib/galaxy/containers/docker_model.py M lib/galaxy/containers/docker_swarm.py R lib/galaxy/containers/docker_swarm_manager.py M lib/galaxy/datatypes/annotation.py M lib/galaxy/datatypes/assembly.py M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/blast.py M lib/galaxy/datatypes/constructive_solid_geometry.py M lib/galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml A lib/galaxy/datatypes/converters/genbankgz_to_genbank.xml M lib/galaxy/datatypes/converters/interval_to_fli.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/genetics.py M lib/galaxy/datatypes/interval.py M lib/galaxy/datatypes/molecules.py M lib/galaxy/datatypes/mothur.py M lib/galaxy/datatypes/msa.py M lib/galaxy/datatypes/ngsindex.py M lib/galaxy/datatypes/phylip.py M lib/galaxy/datatypes/plant_tribes.py M lib/galaxy/datatypes/proteomics.py M lib/galaxy/datatypes/qualityscore.py M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/datatypes/tabular.py A lib/galaxy/datatypes/test/1.afg A lib/galaxy/datatypes/test/1.arff A lib/galaxy/datatypes/test/1.genbank A lib/galaxy/datatypes/test/1.genbank.gz A lib/galaxy/datatypes/test/1.hdt A lib/galaxy/datatypes/test/1.obo A lib/galaxy/datatypes/test/1.owl A lib/galaxy/datatypes/test/1.phyloxml A lib/galaxy/datatypes/test/1.stockholm A lib/galaxy/datatypes/test/1.ttl A lib/galaxy/datatypes/test/1.xmfa A lib/galaxy/datatypes/test/2.tabular A lib/galaxy/datatypes/test/2.txt A lib/galaxy/datatypes/test/3.txt A lib/galaxy/datatypes/test/Acanium.hmm M lib/galaxy/datatypes/text.py M lib/galaxy/datatypes/triples.py M lib/galaxy/datatypes/util/gff_util.py M lib/galaxy/datatypes/xml.py M lib/galaxy/dependencies/__init__.py M lib/galaxy/dependencies/conditional-requirements.txt R lib/galaxy/dependencies/pinned-hashed-requirements.txt A lib/galaxy/dependencies/pinned-requirements.txt R lib/galaxy/dependencies/pinned-requirements.txt A lib/galaxy/dependencies/pipfiles/default/Pipfile A lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/develop/Pipfile.lock R lib/galaxy/dependencies/pipfiles/develop/pinned-hashed-requirements.txt M lib/galaxy/dependencies/pipfiles/develop/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/flake8/Pipfile.lock R lib/galaxy/dependencies/pipfiles/flake8/pinned-hashed-requirements.txt M lib/galaxy/dependencies/pipfiles/flake8/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/update.sh M lib/galaxy/dependencies/requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/dynamic_tool_destination.py M lib/galaxy/jobs/mapper.py M lib/galaxy/jobs/runners/kubernetes.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh M lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT.sh M lib/galaxy/managers/configuration.py M lib/galaxy/managers/workflows.py M lib/galaxy/model/__init__.py M lib/galaxy/model/mapping.py A lib/galaxy/model/migrate/versions/0141_add_oidc_tables.py M lib/galaxy/model/orm/engine_factory.py M lib/galaxy/model/orm/scripts.py M lib/galaxy/objectstore/__init__.py M lib/galaxy/security/__init__.py M lib/galaxy/security/passwords.py M lib/galaxy/security/validate_user_input.py M lib/galaxy/tools/actions/model_operations.py M lib/galaxy/tools/actions/upload_common.py M lib/galaxy/tools/deps/container_resolvers/mulled.py M lib/galaxy/tools/deps/containers.py M lib/galaxy/tools/deps/docker_util.py M lib/galaxy/tools/error_reports/plugins/sentry.py M lib/galaxy/tools/execute.py M lib/galaxy/tools/loader_directory.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/tools/repositories.py M lib/galaxy/tools/xsd/galaxy.xsd M lib/galaxy/util/__init__.py M lib/galaxy/util/checkers.py M lib/galaxy/util/compression_utils.py M lib/galaxy/util/hash_util.py M lib/galaxy/util/json.py M lib/galaxy/util/script.py M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/visualization/plugins/interactive_environments.py M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/visualization/plugins/registry.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/web/framework/middleware/statsd.py M lib/galaxy/web/stack/__init__.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/api/configuration.py M lib/galaxy/webapps/galaxy/api/jobs.py A lib/galaxy/webapps/galaxy/api/plugins.py M lib/galaxy/webapps/galaxy/api/remote_files.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/config_schema.yml M lib/galaxy/webapps/galaxy/controllers/admin.py A lib/galaxy/webapps/galaxy/controllers/authnz.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/webapps/galaxy/controllers/interactive_environments.py M lib/galaxy/webapps/galaxy/controllers/user.py M lib/galaxy/workflow/modules.py A lib/galaxy/workflow/resources/__init__.py A lib/galaxy/workflow/resources/example.py.sample M lib/galaxy/workflow/run_request.py M lib/galaxy_ext/metadata/set_metadata.py M lib/tool_shed/util/hg_util.py M lib/tool_shed/util/shed_util_common.py M lib/tool_shed/util/tool_util.py A scripts/apply_tags.py M scripts/bootstrap_history.py M scripts/cleanup_datasets/admin_cleanup_datasets.py M scripts/cleanup_datasets/cleanup_datasets.py M scripts/cleanup_datasets/pgcleanup.py M scripts/cleanup_datasets/populate_uuid.py R scripts/cleanup_datasets/remove_renamed_datasets_from_disk.py R scripts/cleanup_datasets/rename_purged_datasets.py M scripts/cleanup_datasets/update_dataset_size.py M scripts/cleanup_datasets/update_metadata.py M scripts/common_startup.sh M scripts/communication/communication_server.py R scripts/data_libraries/build_lucene_index.py R scripts/data_libraries/build_lucene_index.sh R scripts/data_libraries/build_whoosh_index.py R scripts/data_libraries/build_whoosh_index.sh M scripts/db_shell.py A scripts/docker_swarm_manager.py M scripts/galaxy-main M scripts/get_uwsgi_args.py M scripts/grt/export.py M scripts/grt/grt.yml.sample M scripts/grt/upload.py M scripts/helper.py M scripts/manage_db.py R scripts/others/incorrect_gops_jobs.py R scripts/others/incorrect_gops_jobs.sh R scripts/others/incorrect_gops_join_jobs.py R scripts/others/incorrect_gops_join_jobs.sh M scripts/runtime_stats.py M scripts/secret_decoder_ring.py M scripts/set_dataset_sizes.py M scripts/set_user_disk_usage.py M scripts/sync_reports_config.py M scripts/transfer.py A static/images/fonts/FontAwesome.otf M static/images/fonts/fontawesome-webfont.eot A static/images/fonts/fontawesome-webfont.svg M static/images/fonts/fontawesome-webfont.ttf M static/images/fonts/fontawesome-webfont.woff A static/images/fonts/fontawesome-webfont.woff2 M static/style/blue/autocomplete_tagging.css M static/style/blue/base.css M static/style/blue/circster.css M static/style/blue/embed_item.css M static/style/blue/library.css M static/style/blue/reports.css M static/style/blue/trackster.css M static/welcome.html.sample R templates/admin/view_data_tables_registry.mako M templates/admin/view_datatypes_registry.mako M templates/base/base_panels.mako M templates/sharing_base.mako M templates/user/login.mako M templates/webapps/galaxy/admin/view_display_applications.mako M templates/webapps/galaxy/data_manager/index.mako M templates/webapps/galaxy/dataset/copy_view.mako M templates/webapps/galaxy/galaxy.panels.mako M templates/webapps/galaxy/workflow/editor.mako M templates/webapps/reports/index.mako M templates/webapps/tool_shed/repository/manage_repository.mako M templates/webapps/tool_shed/repository/view_repository.mako A test-data/rules/PRJDA60709.tsv A test-data/rules/PRJDB3920.tsv A test-data/rules/PRJNA355367.tsv A test-data/rules/uniprot.json A test-data/rules/uniprot.tsv M test/api/test_libraries.py M test/api/test_tools.py M test/api/test_workflows.py A test/base/data/rules_dsl_spec.yml M test/base/populators.py A test/base/workflow_fixtures.py M test/base/workflows_format_2/main.py M test/docker/base/Dockerfile M test/functional/tools/sample_datatypes_conf.xml M test/galaxy_selenium/components.py M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py M test/galaxy_selenium/navigation.yml M test/galaxy_selenium/smart_components.py A test/integration/test_scripts.py M test/integration/test_upload_configuration_options.py R test/selenium_tests/_workflow_fixtures.py M test/selenium_tests/framework.py A test/selenium_tests/test_admin_app.py M test/selenium_tests/test_collection_builders.py M test/selenium_tests/test_library_landing.py M test/selenium_tests/test_library_to_collections.py M test/selenium_tests/test_registration.py M test/selenium_tests/test_saved_histories.py M test/selenium_tests/test_uploads.py M test/selenium_tests/test_workflow_editor.py M test/selenium_tests/test_workflow_management.py M test/selenium_tests/test_workflow_run.py M test/shed_functional/test_data/emboss/datatypes/datatypes_conf.xml A test/unit/jobs/dynamic_tool_destination/data/job_conf.xml M test/unit/jobs/dynamic_tool_destination/data/priority_tool_destination.yml M test/unit/jobs/dynamic_tool_destination/data/test_no_verbose.yml M test/unit/jobs/dynamic_tool_destination/data/test_num_input_datasets.yml M test/unit/jobs/dynamic_tool_destination/data/tool_destination.yml M test/unit/jobs/dynamic_tool_destination/mockGalaxy.py M test/unit/jobs/dynamic_tool_destination/test_dynamic_tool_destination.py M test/unit/jobs/dynamic_tool_destination/ymltests.py M test/unit/unittest_utils/galaxy_mock.py M test/unit/visualizations/plugins/test_VisualizationPlugin.py M test/unit/visualizations/plugins/test_VisualizationsRegistry.py M test/unit/workflows/test_modules.py M tools/data_source/upload.py M tools/data_source/upload.xml M tox.ini Log Message: ----------- Merge remote-tracking branch 'jmchilton/dev' into singlecellobject Commit: 1c433d7d041d50d6e4c5bd886a606ff3af588d9f https://github.com/galaxyproject/galaxy/commit/1c433d7d041d50d6e4c5bd886a60… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-18 (Wed, 18 Apr 2018) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- Merge pull request #5716 from mtekman/singlecellobject Add datatype(s): RDS object and SingleCellExperiment class Compare: https://github.com/galaxyproject/galaxy/compare/fe4bff1fb9d8...1c433d7d041d

1 0