Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 0a3682804f9acf39cff12826eea04905a211e45d
https://github.com/galaxyproject/galaxy/commit/0a3682804f9acf39cff12826eea0…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-04-24 (Tue, 24 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
Log Message:
-----------
Revert "Fix links in rule builder to not interfere with the library router."
This reverts commit d4a890f2fc46c4dd82a77e3a5772546d88a6b95d.
Commit: 4f4cb148b748aa5ca3b1f27d978565728f7df7d8
https://github.com/galaxyproject/galaxy/commit/4f4cb148b748aa5ca3b1f27d9785…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-04-24 (Tue, 24 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
Log Message:
-----------
better fix for href containing hashes
removing href messes with styles and also with bs4
(e.g. active highlighting of dropdowns was broken)
Commit: f3455f5276d1abd44ac4e68b9a9e62059640a19f
https://github.com/galaxyproject/galaxy/commit/f3455f5276d1abd44ac4e68b9a9e…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-24 (Tue, 24 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
Log Message:
-----------
Merge pull request #5968 from martenson/ux-builder
rule builder - better fix for inactive links
Compare: https://github.com/galaxyproject/galaxy/compare/393f436ce594...f3455f5276d1
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: ab92eb6691903e35b75c16bee8f77e0b40db8085
https://github.com/galaxyproject/galaxy/commit/ab92eb6691903e35b75c16bee8f7…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-23 (Mon, 23 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
M client/galaxy/scripts/mvc/collection/list-collection-creator.js
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
Log Message:
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Allow using the rule based collection builders right from libraries.
Commit: 7fd12ec7b83ee303aedb9d77b31d479000b7b5f3
https://github.com/galaxyproject/galaxy/commit/7fd12ec7b83ee303aedb9d77b31d…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-23 (Mon, 23 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
M client/package.json
M client/webpack.config.js
Log Message:
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Rev handsontable client dep - fixes global style contamination of that component.
Commit: d4a890f2fc46c4dd82a77e3a5772546d88a6b95d
https://github.com/galaxyproject/galaxy/commit/d4a890f2fc46c4dd82a77e3a5772…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-23 (Mon, 23 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
Log Message:
-----------
Fix links in rule builder to not interfere with the library router.
Commit: 1209f35a1a6b5647a58b5c5f5c93d73388db8d64
https://github.com/galaxyproject/galaxy/commit/1209f35a1a6b5647a58b5c5f5c93…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-23 (Mon, 23 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
Log Message:
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Pleasant error handling if duplicate identifiers encountered.
- Print a pretty error for this scenerio.
- Improve the error state of the widget to add a cancel and "okay" button - the cancel button dimisses the widget and the okay button gives the reseracher a chance to return to the rules and try again.
Commit: f042f51b366e4c6c82643f30b0fd7bc5fde7950a
https://github.com/galaxyproject/galaxy/commit/f042f51b366e4c6c82643f30b0fd…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-23 (Mon, 23 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
Log Message:
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Style improvements for error messages in RuleBuilder.
Commit: 393f436ce5946440df2e0b6de04ebc6558a57b3f
https://github.com/galaxyproject/galaxy/commit/393f436ce5946440df2e0b6de04e…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-04-24 (Tue, 24 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
M client/galaxy/scripts/mvc/collection/list-collection-creator.js
M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
M client/package.json
M client/webpack.config.js
Log Message:
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Merge pull request #5929 from jmchilton/library_2_rules
Allow using the rule based collection builders right from libraries.
Compare: https://github.com/galaxyproject/galaxy/compare/581e949dff5a...393f436ce594
Branch: refs/heads/release_17.05
Home: https://github.com/galaxyproject/galaxy
Commit: 36a182a6c8b6e49bfb90bb452e443ccd746758bb
https://github.com/galaxyproject/galaxy/commit/36a182a6c8b6e49bfb90bb452e44…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-04-21 (Sat, 21 Apr 2018)
Changed paths:
M lib/galaxy/tools/data/__init__.py
Log Message:
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Resort to os.path.exists() also for paths not ending in .loc
Fix installation of gatk2 iuc's repo, which otherwise does not
add the data tables to `config/shed_tool_data_table_conf.xml` .
Introduced in commit 43c9c287a9a3520d77cc9235dfbfa6ac6cf33227 .
Commit: d80e60ce74aabe64e131d560085af099d52b81cf
https://github.com/galaxyproject/galaxy/commit/d80e60ce74aabe64e131d560085a…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-04-23 (Mon, 23 Apr 2018)
Changed paths:
M lib/galaxy/tools/data/__init__.py
Log Message:
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Merge pull request #5947 from nsoranzo/release_17.05_fix_gatk2_install
[17.05] Resort to os.path.exists() also for paths not ending in .loc
Compare: https://github.com/galaxyproject/galaxy/compare/34421966d41a...d80e60ce74aa
Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: b2fb46db5f10c868a15cff8676e503f5bde1570a
https://github.com/galaxyproject/infrastructure-playbook/commit/b2fb46db5f1…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-23 (Mon, 23 Apr 2018)
Changed paths:
R env/tacc/group_vars/stats/vars.yml
R env/tacc/group_vars/stats/vault.yml
R env/tacc/group_vars/statsservers.yml
A env/tacc/group_vars/statsservers/vars.yml
A env/tacc/group_vars/statsservers/vault.yml
M roles/stats/defaults/main.yml
M roles/stats/tasks/main.yml
Log Message:
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Fix stats/upgrade stats components
Commit: 73dc2d961db7f2ee524f41582e14c4f7fddd7b6d
https://github.com/galaxyproject/infrastructure-playbook/commit/73dc2d961db…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-23 (Mon, 23 Apr 2018)
Changed paths:
M env/tacc/group_vars/all.yml
M env/tacc/group_vars/galaxyservers.yml
M env/tacc/group_vars/statsservers/vars.yml
M env/tacc/playbook.yml
A env/tacc/telegraf.yml
M env/tacc/templates/supervisor/stats.j2
A roles/dj-wasabi.telegraf/.gitignore
A roles/dj-wasabi.telegraf/.travis.yml
A roles/dj-wasabi.telegraf/CHANGELOG.md
A roles/dj-wasabi.telegraf/README.md
A roles/dj-wasabi.telegraf/defaults/main.yml
A roles/dj-wasabi.telegraf/handlers/main.yml
A roles/dj-wasabi.telegraf/meta/.galaxy_install_info
A roles/dj-wasabi.telegraf/meta/main.yml
A roles/dj-wasabi.telegraf/molecule/default/Dockerfile.j2
A roles/dj-wasabi.telegraf/molecule/default/INSTALL.rst
A roles/dj-wasabi.telegraf/molecule/default/create.yml
A roles/dj-wasabi.telegraf/molecule/default/destroy.yml
A roles/dj-wasabi.telegraf/molecule/default/molecule.yml
A roles/dj-wasabi.telegraf/molecule/default/playbook.yml
A roles/dj-wasabi.telegraf/molecule/default/tests/test_default.py
A roles/dj-wasabi.telegraf/molecule/default/tests/test_default.pyc
A roles/dj-wasabi.telegraf/molecule/default/yaml-lint.yml
A roles/dj-wasabi.telegraf/tasks/Debian.yml
A roles/dj-wasabi.telegraf/tasks/RedHat.yml
A roles/dj-wasabi.telegraf/tasks/main.yml
A roles/dj-wasabi.telegraf/templates/etc-opt-telegraf-telegraf.conf.j2
A roles/dj-wasabi.telegraf/templates/telegraf-extra-plugin.conf.j2
A roles/dj-wasabi.telegraf/templates/telegraf.conf.j2
M roles/sentry/tasks/main.yml
M roles/stats/tasks/main.yml
R roles/stats/templates/telegraf.conf.j2
Log Message:
-----------
Run telegraf on everything, and have Galaxy log to a telegraf+statsd running host-local so these stats can be separated
Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/dd951a455b…