Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: e64e61d701d3261a84730992bd0e6f689778befd
https://github.com/galaxyproject/infrastructure-playbook/commit/e64e61d701d…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-13 (Fri, 13 Apr 2018)
Changed paths:
M common_env/group_vars/baseenv/vars.yml
M common_env/group_vars/baseenv/vault.yml
M env/tacc/group_vars/galaxynodes.yml
A env/tacc/group_vars/maingalaxyservers.yml
R env/tacc/group_vars/maingalaxyservers/vars.yml
R env/tacc/group_vars/maingalaxyservers/vault.yml
A env/tacc/group_vars/testgalaxyservers.yml
R env/tacc/group_vars/testgalaxyservers/vars.yml
R env/tacc/group_vars/testgalaxyservers/vault.yml
Log Message:
-----------
Keep the list of team users in one place instead of 50
Commit: de352bfcd479460ba59a60758b0ac751abffd721
https://github.com/galaxyproject/infrastructure-playbook/commit/de352bfcd47…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-13 (Fri, 13 Apr 2018)
Changed paths:
M common_roles
Log Message:
-----------
Update common roles
Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/72a2bc06d5…
Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: cce10053db47c04f4a88118332ece417f246a39e
https://github.com/galaxyproject/infrastructure-playbook/commit/cce10053db4…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-13 (Fri, 13 Apr 2018)
Changed paths:
A env/tacc/files/galaxy/cancelled.sh
A env/tacc/files/monitoring/mailoom.py
A env/tacc/files/slurm/spartbalance
A env/tacc/files/ssl
A env/tacc/group_vars/all.yml
A env/tacc/group_vars/baseenv
A env/tacc/group_vars/dockerclients.yml
A env/tacc/group_vars/galaxynodes.yml
A env/tacc/group_vars/galaxyservers.yml
A env/tacc/group_vars/maingalaxyservers/vars.yml
A env/tacc/group_vars/maingalaxyservers/vault.yml
A env/tacc/group_vars/rabbitmqservers/vars.yml
A env/tacc/group_vars/rabbitmqservers/vault.yml
A env/tacc/group_vars/slurmclients.yml
A env/tacc/group_vars/slurmdbdservers/vars.yml
A env/tacc/group_vars/slurmdbdservers/vault.yml
A env/tacc/group_vars/slurmservers.yml
A env/tacc/group_vars/sslservers
A env/tacc/group_vars/statsservers.yml
A env/tacc/group_vars/testgalaxyservers/vars.yml
A env/tacc/group_vars/testgalaxyservers/vault.yml
A env/tacc/host_vars/galaxy-db-02.tacc.utexas.edu/vars.yml
A env/tacc/host_vars/galaxy-db-02.tacc.utexas.edu/vault.yml
A env/tacc/host_vars/galaxy04.tacc.utexas.edu.yml
A env/tacc/host_vars/galaxy06.tacc.utexas.edu.yml
A env/tacc/host_vars/galaxy07.tacc.utexas.edu.yml
A env/tacc/inventory
A env/tacc/playbook.yml
A env/tacc/secret_group_vars/dockersslclients.yml
A env/tacc/secret_group_vars/slurmclients.yml
A env/tacc/secret_group_vars/sslwebservers.yml
A env/tacc/secret_group_vars/stats.yml
A env/tacc/secret_host_vars/default.yml
A env/tacc/secret_host_vars/galaxy04.tacc.utexas.edu.yml
A env/tacc/templates/nginx/galaxy-installers.j2
A env/tacc/templates/nginx/sentry.j2
A env/tacc/templates/nginx/stats.j2
A env/tacc/templates/slurm/slurm.conf.j2
A env/tacc/templates/supervisor/sentry.j2
A env/tacc/templates/supervisor/stats.j2
R taccenv/files/galaxy/cancelled.sh
R taccenv/files/monitoring/mailoom.py
R taccenv/files/slurm/spartbalance
R taccenv/files/ssl
R taccenv/group_vars/all.yml
R taccenv/group_vars/baseenv
R taccenv/group_vars/dockerclients.yml
R taccenv/group_vars/galaxynodes.yml
R taccenv/group_vars/galaxyservers.yml
R taccenv/group_vars/maingalaxyservers/vars.yml
R taccenv/group_vars/maingalaxyservers/vault.yml
R taccenv/group_vars/rabbitmqservers/vars.yml
R taccenv/group_vars/rabbitmqservers/vault.yml
R taccenv/group_vars/slurmclients.yml
R taccenv/group_vars/slurmdbdservers/vars.yml
R taccenv/group_vars/slurmdbdservers/vault.yml
R taccenv/group_vars/slurmservers.yml
R taccenv/group_vars/sslservers
R taccenv/group_vars/statsservers.yml
R taccenv/group_vars/testgalaxyservers/vars.yml
R taccenv/group_vars/testgalaxyservers/vault.yml
R taccenv/host_vars/galaxy-db-02.tacc.utexas.edu/vars.yml
R taccenv/host_vars/galaxy-db-02.tacc.utexas.edu/vault.yml
R taccenv/host_vars/galaxy04.tacc.utexas.edu.yml
R taccenv/host_vars/galaxy06.tacc.utexas.edu.yml
R taccenv/host_vars/galaxy07.tacc.utexas.edu.yml
R taccenv/inventory
R taccenv/playbook.yml
R taccenv/secret_group_vars/dockersslclients.yml
R taccenv/secret_group_vars/slurmclients.yml
R taccenv/secret_group_vars/sslwebservers.yml
R taccenv/secret_group_vars/stats.yml
R taccenv/secret_host_vars/default.yml
R taccenv/secret_host_vars/galaxy04.tacc.utexas.edu.yml
R taccenv/templates/nginx/galaxy-installers.j2
R taccenv/templates/nginx/sentry.j2
R taccenv/templates/nginx/stats.j2
R taccenv/templates/slurm/slurm.conf.j2
R taccenv/templates/supervisor/sentry.j2
R taccenv/templates/supervisor/stats.j2
Log Message:
-----------
Move taccenv to env/tacc
Commit: 264d07af3d765dcd6c97f27fc20c91700fc81b1c
https://github.com/galaxyproject/infrastructure-playbook/commit/264d07af3d7…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-13 (Fri, 13 Apr 2018)
Changed paths:
M env/tacc/files/ssl
M env/tacc/group_vars/baseenv
M env/tacc/group_vars/sslservers
Log Message:
-----------
Fix symlinks broken by move
Commit: dde2217e106444fc771370458a6f87d5fe8e5d70
https://github.com/galaxyproject/infrastructure-playbook/commit/dde2217e106…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-13 (Fri, 13 Apr 2018)
Changed paths:
R env/tacc/group_vars/slurmclients.yml
A env/tacc/group_vars/slurmclients/vars.yml
A env/tacc/group_vars/slurmclients/vault.yml
A env/tacc/group_vars/stats/vars.yml
A env/tacc/group_vars/stats/vault.yml
R env/tacc/host_vars/galaxy04.tacc.utexas.edu.yml
A env/tacc/host_vars/galaxy04.tacc.utexas.edu/vars.yml
A env/tacc/host_vars/galaxy04.tacc.utexas.edu/vault.yml
M env/tacc/playbook.yml
R env/tacc/secret_group_vars/dockersslclients.yml
R env/tacc/secret_group_vars/slurmclients.yml
R env/tacc/secret_group_vars/sslwebservers.yml
R env/tacc/secret_group_vars/stats.yml
R env/tacc/secret_host_vars/default.yml
R env/tacc/secret_host_vars/galaxy04.tacc.utexas.edu.yml
Log Message:
-----------
Remove secret_*_vars from tacc env
Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/fa3ed84610…
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 8b3fe214763341ffa0a1b614a464de5b9b8561b7
https://github.com/galaxyproject/galaxy/commit/8b3fe214763341ffa0a1b614a464…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-06 (Fri, 06 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
A client/galaxy/scripts/mvc/rules/rule-definitions.js
Log Message:
-----------
Refactor rules def toward reuse outside RuleCollectionBuilder.vue.
Commit: 47795ea707fcb3575aa823ea143691b53e795c8d
https://github.com/galaxyproject/galaxy/commit/47795ea707fcb3575aa823ea1436…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-06 (Fri, 06 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
M client/galaxy/scripts/mvc/collection/list-collection-creator.js
Log Message:
-----------
Cleanup rule UI code, refactor toward use w/existing collections.
Commit: 595c7621419d457587c486d2c05b60ccf35fbb5d
https://github.com/galaxyproject/galaxy/commit/595c7621419d457587c486d2c05b…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-06 (Fri, 06 Apr 2018)
Changed paths:
M client/galaxy/scripts/mvc/upload/collection/rules-input-view.js
Log Message:
-----------
Add reset and close buttons for upload widget when selecting rules.
Commit: 109e97d82ad9d578966ed98a051f0dce6aeb1682
https://github.com/galaxyproject/galaxy/commit/109e97d82ad9d578966ed98a051f…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-06 (Fri, 06 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
Log Message:
-----------
Rules editor - add X to column definitions inside edit mode.
Previously these were only available in preview mode.
Commit: d12635375aac0008d987ab71aedfc5a24b115663
https://github.com/galaxyproject/galaxy/commit/d12635375aac0008d987ab71aedf…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-06 (Fri, 06 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
Log Message:
-----------
Improve styling, wording of rule editor buttons.
- Replace "Okay" with "Apply" on button labels.
- Create CSS style for buttons in rule editor part of the component.
- More consistency - right-align all the buttons, more consistent spacing.
- Make primary action that button blue to make the buttons look a little bland.
Commit: 2254dba7342040c86d28b2c97153d253fe175791
https://github.com/galaxyproject/galaxy/commit/2254dba7342040c86d28b2c97153…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-06 (Fri, 06 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
Log Message:
-----------
Bug fix for conditional rule button rendering...
Commit: c34b23b428898f0da5657d96fd048969829d0a91
https://github.com/galaxyproject/galaxy/commit/c34b23b428898f0da5657d96fd04…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-06 (Fri, 06 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
Log Message:
-----------
Rule builder - more correct, better abstracted logic for display name input.
Commit: b3f589cc9349be2e583f2f085c1d2f696d087d80
https://github.com/galaxyproject/galaxy/commit/b3f589cc9349be2e583f2f085c1d…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-07 (Sat, 07 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
M client/galaxy/scripts/mvc/rules/rule-definitions.js
M client/package.json
M client/yarn.lock
M test-data/rules/uniprot.json
M test/selenium_tests/test_uploads.py
Log Message:
-----------
For rule builder, use Python-like regular expressions in-browser.
Leverages the [pyre-to-regexp](https://github.com/jmchilton/pyre-to-regexp) that I recently published for this purpose.
Commit: c520bb400c2a75270c87896b155d24fc574ef7d5
https://github.com/galaxyproject/galaxy/commit/c520bb400c2a75270c87896b155d…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-07 (Sat, 07 Apr 2018)
Changed paths:
M client/galaxy/scripts/mvc/rules/rule-definitions.js
Log Message:
-----------
Type fix for JS rule builder code.
Commit: eb67d422ef644cb43c3d66d02c86fd1d5ee41e0a
https://github.com/galaxyproject/galaxy/commit/eb67d422ef644cb43c3d66d02c86…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-04-13 (Fri, 13 Apr 2018)
Changed paths:
M client/galaxy/scripts/components/RuleCollectionBuilder.vue
M client/galaxy/scripts/mvc/collection/list-collection-creator.js
A client/galaxy/scripts/mvc/rules/rule-definitions.js
M client/galaxy/scripts/mvc/upload/collection/rules-input-view.js
M client/package.json
M client/yarn.lock
M test-data/rules/uniprot.json
M test/selenium_tests/test_uploads.py
Log Message:
-----------
Merge pull request #5823 from jmchilton/rule_tweaks
Various Improvements for the Rule Builder Widget
Compare: https://github.com/galaxyproject/galaxy/compare/6e16b776df30...eb67d422ef64
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 2cc650078d3a9fc92355ba2dd326287fabe009a6
https://github.com/galaxyproject/galaxy/commit/2cc650078d3a9fc92355ba2dd326…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-12 (Thu, 12 Apr 2018)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-connector.js
M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js
M templates/base/base_panels.mako
M templates/webapps/galaxy/galaxy.panels.mako
M test/api/test_workflows.py
A test/base/workflow_fixtures.py
M test/galaxy_selenium/navigation.yml
R test/selenium_tests/_workflow_fixtures.py
M test/selenium_tests/test_workflow_editor.py
M test/selenium_tests/test_workflow_run.py
Log Message:
-----------
More, better workflow editor Selenium tests - part 2.
- More stuff tested:
- Connecting and disconnecting simple terminals as well as mapping terminals (ribbons).
- Rendering simple workflows, workflow with output collections, workflow with mapping, and workflow with a subworkflow.
- Collapsing side panels in the workflow editor.
- Small tweaks to editor DOM.
- More screenshots.
Commit: 6e16b776df306d4f04c4bcf3ec523f53986a4bc8
https://github.com/galaxyproject/galaxy/commit/6e16b776df306d4f04c4bcf3ec52…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-04-13 (Fri, 13 Apr 2018)
Changed paths:
M client/galaxy/scripts/mvc/workflow/workflow-connector.js
M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js
M templates/base/base_panels.mako
M templates/webapps/galaxy/galaxy.panels.mako
M test/api/test_workflows.py
A test/base/workflow_fixtures.py
M test/galaxy_selenium/navigation.yml
R test/selenium_tests/_workflow_fixtures.py
M test/selenium_tests/test_workflow_editor.py
M test/selenium_tests/test_workflow_run.py
Log Message:
-----------
Merge pull request #5882 from jmchilton/editor_tests_2
More, better workflow editor Selenium tests - part 2.
Compare: https://github.com/galaxyproject/galaxy/compare/1bc1720ea8a0...6e16b776df30