April 2018 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/infrastructure-playbook] 8108c8: Update common roles
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/galaxyenv Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 8108c8f4cef4ee4aeb876303c0e19e3f08cc055c https://github.com/galaxyproject/infrastructure-playbook/commit/8108c8f4cef… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M common_roles Log Message: ----------- Update common roles

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[galaxyproject/infrastructure-playbook] e64e61: Keep the list of team users in one place instead o...
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: e64e61d701d3261a84730992bd0e6f689778befd https://github.com/galaxyproject/infrastructure-playbook/commit/e64e61d701d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M common_env/group_vars/baseenv/vars.yml M common_env/group_vars/baseenv/vault.yml M env/tacc/group_vars/galaxynodes.yml A env/tacc/group_vars/maingalaxyservers.yml R env/tacc/group_vars/maingalaxyservers/vars.yml R env/tacc/group_vars/maingalaxyservers/vault.yml A env/tacc/group_vars/testgalaxyservers.yml R env/tacc/group_vars/testgalaxyservers/vars.yml R env/tacc/group_vars/testgalaxyservers/vault.yml Log Message: ----------- Keep the list of team users in one place instead of 50 Commit: de352bfcd479460ba59a60758b0ac751abffd721 https://github.com/galaxyproject/infrastructure-playbook/commit/de352bfcd47… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M common_roles Log Message: ----------- Update common roles Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/72a2bc06d5…

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[galaxyproject/infrastructure-playbook] 72a2bc: Include lookup plugins from common_roles
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 72a2bc06d5468fa94e1b59b260ce257e596ac1d4 https://github.com/galaxyproject/infrastructure-playbook/commit/72a2bc06d54… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M ansible.cfg Log Message: ----------- Include lookup plugins from common_roles

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[galaxyproject/galaxy] d13fc0: Move the statement below _galaxy_setup_environmen...
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d13fc00a7446ff8c444cc89c0d7b8668d2147e09 https://github.com/galaxyproject/galaxy/commit/d13fc00a7446ff8c444cc89c0d7b… Author: Oleksandr Moskalenko <om(a)rc.ufl.edu> Date: 2018-04-12 (Thu, 12 Apr 2018) Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Move the statement below _galaxy_setup_environment to ensure that custom PATH to a non-system SLURM install will be applied if set in environment_setup_file Commit: 225f6af3c07b44a672ac0571f57cf7c5766a3056 https://github.com/galaxyproject/galaxy/commit/225f6af3c07b44a672ac0571f57c… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Merge pull request #5880 from moskalenko/dev Move the memory statement below _galaxy_setup_environment Compare: https://github.com/galaxyproject/galaxy/compare/e91163a9fcc9...225f6af3c07b

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[galaxyproject/galaxy] fa4ab8: If no dataset is found for dataset_id raise an exc...
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: fa4ab8248351d9434bc3d12e6af2afea21e5993e https://github.com/galaxyproject/galaxy/commit/fa4ab8248351d9434bc3d12e6af2… Author: Olivier Sallou <olivier.sallou(a)gmail.com> Date: 2018-04-03 (Tue, 03 Apr 2018) Changed paths: M lib/galaxy/web/base/controller.py Log Message: ----------- If no dataset is found for dataset_id raise an exception Commit: 20526e4229e2c6f7341636495895c4abb2647976 https://github.com/galaxyproject/galaxy/commit/20526e4229e2c6f7341636495895… Author: Olivier Sallou <olivier.sallou(a)gmail.com> Date: 2018-04-03 (Tue, 03 Apr 2018) Changed paths: M lib/galaxy/web/base/controller.py Log Message: ----------- change exception raised Commit: 8750c1a10555f48ee4f148c2d59d19e519b6b54b https://github.com/galaxyproject/galaxy/commit/8750c1a10555f48ee4f148c2d59d… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M lib/galaxy/web/base/controller.py Log Message: ----------- switch to badrequest exceptions Commit: 25e4d0448476e77cf58a4a975b6468c2e56e625b https://github.com/galaxyproject/galaxy/commit/25e4d0448476e77cf58a4a975b64… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M lib/galaxy/web/base/controller.py Log Message: ----------- remove unused import Commit: e91163a9fcc96c772c8891ba554d0a7d9f7857c7 https://github.com/galaxyproject/galaxy/commit/e91163a9fcc96c772c8891ba554d… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M lib/galaxy/web/base/controller.py Log Message: ----------- Merge pull request #5829 from osallou/fix_no_dataset_found Fix no dataset found Compare: https://github.com/galaxyproject/galaxy/compare/b0d867efa352...e91163a9fcc9

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[galaxyproject/infrastructure-playbook] cce100: Move taccenv to env/tacc
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: cce10053db47c04f4a88118332ece417f246a39e https://github.com/galaxyproject/infrastructure-playbook/commit/cce10053db4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: A env/tacc/files/galaxy/cancelled.sh A env/tacc/files/monitoring/mailoom.py A env/tacc/files/slurm/spartbalance A env/tacc/files/ssl A env/tacc/group_vars/all.yml A env/tacc/group_vars/baseenv A env/tacc/group_vars/dockerclients.yml A env/tacc/group_vars/galaxynodes.yml A env/tacc/group_vars/galaxyservers.yml A env/tacc/group_vars/maingalaxyservers/vars.yml A env/tacc/group_vars/maingalaxyservers/vault.yml A env/tacc/group_vars/rabbitmqservers/vars.yml A env/tacc/group_vars/rabbitmqservers/vault.yml A env/tacc/group_vars/slurmclients.yml A env/tacc/group_vars/slurmdbdservers/vars.yml A env/tacc/group_vars/slurmdbdservers/vault.yml A env/tacc/group_vars/slurmservers.yml A env/tacc/group_vars/sslservers A env/tacc/group_vars/statsservers.yml A env/tacc/group_vars/testgalaxyservers/vars.yml A env/tacc/group_vars/testgalaxyservers/vault.yml A env/tacc/host_vars/galaxy-db-02.tacc.utexas.edu/vars.yml A env/tacc/host_vars/galaxy-db-02.tacc.utexas.edu/vault.yml A env/tacc/host_vars/galaxy04.tacc.utexas.edu.yml A env/tacc/host_vars/galaxy06.tacc.utexas.edu.yml A env/tacc/host_vars/galaxy07.tacc.utexas.edu.yml A env/tacc/inventory A env/tacc/playbook.yml A env/tacc/secret_group_vars/dockersslclients.yml A env/tacc/secret_group_vars/slurmclients.yml A env/tacc/secret_group_vars/sslwebservers.yml A env/tacc/secret_group_vars/stats.yml A env/tacc/secret_host_vars/default.yml A env/tacc/secret_host_vars/galaxy04.tacc.utexas.edu.yml A env/tacc/templates/nginx/galaxy-installers.j2 A env/tacc/templates/nginx/sentry.j2 A env/tacc/templates/nginx/stats.j2 A env/tacc/templates/slurm/slurm.conf.j2 A env/tacc/templates/supervisor/sentry.j2 A env/tacc/templates/supervisor/stats.j2 R taccenv/files/galaxy/cancelled.sh R taccenv/files/monitoring/mailoom.py R taccenv/files/slurm/spartbalance R taccenv/files/ssl R taccenv/group_vars/all.yml R taccenv/group_vars/baseenv R taccenv/group_vars/dockerclients.yml R taccenv/group_vars/galaxynodes.yml R taccenv/group_vars/galaxyservers.yml R taccenv/group_vars/maingalaxyservers/vars.yml R taccenv/group_vars/maingalaxyservers/vault.yml R taccenv/group_vars/rabbitmqservers/vars.yml R taccenv/group_vars/rabbitmqservers/vault.yml R taccenv/group_vars/slurmclients.yml R taccenv/group_vars/slurmdbdservers/vars.yml R taccenv/group_vars/slurmdbdservers/vault.yml R taccenv/group_vars/slurmservers.yml R taccenv/group_vars/sslservers R taccenv/group_vars/statsservers.yml R taccenv/group_vars/testgalaxyservers/vars.yml R taccenv/group_vars/testgalaxyservers/vault.yml R taccenv/host_vars/galaxy-db-02.tacc.utexas.edu/vars.yml R taccenv/host_vars/galaxy-db-02.tacc.utexas.edu/vault.yml R taccenv/host_vars/galaxy04.tacc.utexas.edu.yml R taccenv/host_vars/galaxy06.tacc.utexas.edu.yml R taccenv/host_vars/galaxy07.tacc.utexas.edu.yml R taccenv/inventory R taccenv/playbook.yml R taccenv/secret_group_vars/dockersslclients.yml R taccenv/secret_group_vars/slurmclients.yml R taccenv/secret_group_vars/sslwebservers.yml R taccenv/secret_group_vars/stats.yml R taccenv/secret_host_vars/default.yml R taccenv/secret_host_vars/galaxy04.tacc.utexas.edu.yml R taccenv/templates/nginx/galaxy-installers.j2 R taccenv/templates/nginx/sentry.j2 R taccenv/templates/nginx/stats.j2 R taccenv/templates/slurm/slurm.conf.j2 R taccenv/templates/supervisor/sentry.j2 R taccenv/templates/supervisor/stats.j2 Log Message: ----------- Move taccenv to env/tacc Commit: 264d07af3d765dcd6c97f27fc20c91700fc81b1c https://github.com/galaxyproject/infrastructure-playbook/commit/264d07af3d7… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M env/tacc/files/ssl M env/tacc/group_vars/baseenv M env/tacc/group_vars/sslservers Log Message: ----------- Fix symlinks broken by move Commit: dde2217e106444fc771370458a6f87d5fe8e5d70 https://github.com/galaxyproject/infrastructure-playbook/commit/dde2217e106… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: R env/tacc/group_vars/slurmclients.yml A env/tacc/group_vars/slurmclients/vars.yml A env/tacc/group_vars/slurmclients/vault.yml A env/tacc/group_vars/stats/vars.yml A env/tacc/group_vars/stats/vault.yml R env/tacc/host_vars/galaxy04.tacc.utexas.edu.yml A env/tacc/host_vars/galaxy04.tacc.utexas.edu/vars.yml A env/tacc/host_vars/galaxy04.tacc.utexas.edu/vault.yml M env/tacc/playbook.yml R env/tacc/secret_group_vars/dockersslclients.yml R env/tacc/secret_group_vars/slurmclients.yml R env/tacc/secret_group_vars/sslwebservers.yml R env/tacc/secret_group_vars/stats.yml R env/tacc/secret_host_vars/default.yml R env/tacc/secret_host_vars/galaxy04.tacc.utexas.edu.yml Log Message: ----------- Remove secret_*_vars from tacc env Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/fa3ed84610…

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[galaxyproject/galaxy] ed95d9: Check tool version when importing subworkflows fro...
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ed95d9f40b83b44959030d70b7b5157ee0714b08 https://github.com/galaxyproject/galaxy/commit/ed95d9f40b83b44959030d70b7b5… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Check tool version when importing subworkflows from dictionary Commit: d9a755082281669c64b0c8ae02655fdd3039fa0d https://github.com/galaxyproject/galaxy/commit/d9a755082281669c64b0c8ae0265… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/web/base/controller.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/workflow/modules.py Log Message: ----------- Always match exact tool version Commit: 6fbf0e38cc8eb936cbdc0aa5eb22549793151b0f https://github.com/galaxyproject/galaxy/commit/6fbf0e38cc8eb936cbdc0aa5eb22… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/managers/workflows.py M lib/galaxy/workflow/modules.py Log Message: ----------- Allow upgrade when workflow is loaded into editor Commit: cd3a637325d2921ca45f7f370f1bf2087cb99f09 https://github.com/galaxyproject/galaxy/commit/cd3a637325d2921ca45f7f370f1b… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/managers/workflows.py M lib/galaxy/workflow/modules.py Log Message: ----------- Allow tool version upgrade for the run form Commit: 160b618759b5bf288cf11b7cdf99372fe2961a36 https://github.com/galaxyproject/galaxy/commit/160b618759b5bf288cf11b7cdf99… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/workflow/modules.py Log Message: ----------- Remove redundant default for tool version flag Commit: e362ea5a1623e4bbade583c6439456b2ebf475bf https://github.com/galaxyproject/galaxy/commit/e362ea5a1623e4bbade583c64394… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Return proper error message if module cannot be produced Commit: c320e777a91e2ca3688d5a92ce28f5b744d87ccf https://github.com/galaxyproject/galaxy/commit/c320e777a91e2ca3688d5a92ce28… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/tools/parameters/grouping.py Log Message: ----------- Add additional check for section handler Commit: bd7a71c7fa89f4f798387cb65524faeff7fd2c5f https://github.com/galaxyproject/galaxy/commit/bd7a71c7fa89f4f798387cb65524… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M lib/galaxy/tools/parameters/grouping.py Log Message: ----------- Apply consistent group value handling Commit: 028d07323d93f900cdca45a67533cb5a2ddc4795 https://github.com/galaxyproject/galaxy/commit/028d07323d93f900cdca45a67533… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-03-31 (Sat, 31 Mar 2018) Changed paths: M test/unit/workflows/test_modules.py Log Message: ----------- Adjust test case Commit: b0d867efa352fb4c82535efadf0666757c530eec https://github.com/galaxyproject/galaxy/commit/b0d867efa352fb4c82535efadf06… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M lib/galaxy/managers/workflows.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/web/base/controller.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/workflow/modules.py M test/unit/workflows/test_modules.py Log Message: ----------- Merge pull request #5821 from guerler/exact_version_handling Avoid silent tool upgrades during workflow imports Compare: https://github.com/galaxyproject/galaxy/compare/eb67d422ef64...b0d867efa352

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[galaxyproject/galaxy] 8b3fe2: Refactor rules def toward reuse outside RuleCollec...
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8b3fe214763341ffa0a1b614a464de5b9b8561b7 https://github.com/galaxyproject/galaxy/commit/8b3fe214763341ffa0a1b614a464… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue A client/galaxy/scripts/mvc/rules/rule-definitions.js Log Message: ----------- Refactor rules def toward reuse outside RuleCollectionBuilder.vue. Commit: 47795ea707fcb3575aa823ea143691b53e795c8d https://github.com/galaxyproject/galaxy/commit/47795ea707fcb3575aa823ea1436… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/collection/list-collection-creator.js Log Message: ----------- Cleanup rule UI code, refactor toward use w/existing collections. Commit: 595c7621419d457587c486d2c05b60ccf35fbb5d https://github.com/galaxyproject/galaxy/commit/595c7621419d457587c486d2c05b… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/upload/collection/rules-input-view.js Log Message: ----------- Add reset and close buttons for upload widget when selecting rules. Commit: 109e97d82ad9d578966ed98a051f0dce6aeb1682 https://github.com/galaxyproject/galaxy/commit/109e97d82ad9d578966ed98a051f… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Rules editor - add X to column definitions inside edit mode. Previously these were only available in preview mode. Commit: d12635375aac0008d987ab71aedfc5a24b115663 https://github.com/galaxyproject/galaxy/commit/d12635375aac0008d987ab71aedf… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Improve styling, wording of rule editor buttons. - Replace "Okay" with "Apply" on button labels. - Create CSS style for buttons in rule editor part of the component. - More consistency - right-align all the buttons, more consistent spacing. - Make primary action that button blue to make the buttons look a little bland. Commit: 2254dba7342040c86d28b2c97153d253fe175791 https://github.com/galaxyproject/galaxy/commit/2254dba7342040c86d28b2c97153… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Bug fix for conditional rule button rendering... Commit: c34b23b428898f0da5657d96fd048969829d0a91 https://github.com/galaxyproject/galaxy/commit/c34b23b428898f0da5657d96fd04… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-06 (Fri, 06 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Rule builder - more correct, better abstracted logic for display name input. Commit: b3f589cc9349be2e583f2f085c1d2f696d087d80 https://github.com/galaxyproject/galaxy/commit/b3f589cc9349be2e583f2f085c1d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-07 (Sat, 07 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/rules/rule-definitions.js M client/package.json M client/yarn.lock M test-data/rules/uniprot.json M test/selenium_tests/test_uploads.py Log Message: ----------- For rule builder, use Python-like regular expressions in-browser. Leverages the [pyre-to-regexp](https://github.com/jmchilton/pyre-to-regexp) that I recently published for this purpose. Commit: c520bb400c2a75270c87896b155d24fc574ef7d5 https://github.com/galaxyproject/galaxy/commit/c520bb400c2a75270c87896b155d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-07 (Sat, 07 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/rules/rule-definitions.js Log Message: ----------- Type fix for JS rule builder code. Commit: eb67d422ef644cb43c3d66d02c86fd1d5ee41e0a https://github.com/galaxyproject/galaxy/commit/eb67d422ef644cb43c3d66d02c86… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/collection/list-collection-creator.js A client/galaxy/scripts/mvc/rules/rule-definitions.js M client/galaxy/scripts/mvc/upload/collection/rules-input-view.js M client/package.json M client/yarn.lock M test-data/rules/uniprot.json M test/selenium_tests/test_uploads.py Log Message: ----------- Merge pull request #5823 from jmchilton/rule_tweaks Various Improvements for the Rule Builder Widget Compare: https://github.com/galaxyproject/galaxy/compare/6e16b776df30...eb67d422ef64

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[galaxyproject/galaxy] 2cc650: More, better workflow editor Selenium tests - part...
by GitHub 13 Apr '18

13 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2cc650078d3a9fc92355ba2dd326287fabe009a6 https://github.com/galaxyproject/galaxy/commit/2cc650078d3a9fc92355ba2dd326… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-04-12 (Thu, 12 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M templates/base/base_panels.mako M templates/webapps/galaxy/galaxy.panels.mako M test/api/test_workflows.py A test/base/workflow_fixtures.py M test/galaxy_selenium/navigation.yml R test/selenium_tests/_workflow_fixtures.py M test/selenium_tests/test_workflow_editor.py M test/selenium_tests/test_workflow_run.py Log Message: ----------- More, better workflow editor Selenium tests - part 2. - More stuff tested: - Connecting and disconnecting simple terminals as well as mapping terminals (ribbons). - Rendering simple workflows, workflow with output collections, workflow with mapping, and workflow with a subworkflow. - Collapsing side panels in the workflow editor. - Small tweaks to editor DOM. - More screenshots. Commit: 6e16b776df306d4f04c4bcf3ec523f53986a4bc8 https://github.com/galaxyproject/galaxy/commit/6e16b776df306d4f04c4bcf3ec52… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-04-13 (Fri, 13 Apr 2018) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-connector.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M templates/base/base_panels.mako M templates/webapps/galaxy/galaxy.panels.mako M test/api/test_workflows.py A test/base/workflow_fixtures.py M test/galaxy_selenium/navigation.yml R test/selenium_tests/_workflow_fixtures.py M test/selenium_tests/test_workflow_editor.py M test/selenium_tests/test_workflow_run.py Log Message: ----------- Merge pull request #5882 from jmchilton/editor_tests_2 More, better workflow editor Selenium tests - part 2. Compare: https://github.com/galaxyproject/galaxy/compare/1bc1720ea8a0...6e16b776df30

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[galaxyproject/galaxy] 2cec29: Update cluster config docs for virtualenv issue fo...
by GitHub 12 Apr '18

12 Apr '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2cec29c043f6a57e7abc74149b928d990ef2364e https://github.com/galaxyproject/galaxy/commit/2cec29c043f6a57e7abc74149b92… Author: Oleksandr Moskalenko <om(a)rc.ufl.edu> Date: 2018-04-12 (Thu, 12 Apr 2018) Changed paths: M doc/source/admin/cluster.md Log Message: ----------- Update cluster config docs for virtualenv issue for drmaa real user jobs. Commit: 1bc1720ea8a0c55628201a91f8496f6df588e90f https://github.com/galaxyproject/galaxy/commit/1bc1720ea8a0c55628201a91f849… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-04-12 (Thu, 12 Apr 2018) Changed paths: M doc/source/admin/cluster.md Log Message: ----------- Merge pull request #5881 from moskalenko/doc Update cluster docs for virtualenv issue in drmaa real user jobs Compare: https://github.com/galaxyproject/galaxy/compare/1583db76ebeb...1bc1720ea8a0

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