Branch: refs/heads/release_18.05
Home: https://github.com/galaxyproject/galaxy
Commit: 50f9ca82ba158736e7ed735e3d949a65127a5111
https://github.com/galaxyproject/galaxy/commit/50f9ca82ba158736e7ed735e3d94…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-19 (Thu, 19 Apr 2018)
Changed paths:
M lib/galaxy/containers/__init__.py
M lib/galaxy/visualization/plugins/interactive_environments.py
M lib/galaxy/web/proxy/__init__.py
M lib/galaxy/webapps/galaxy/controllers/interactive_environments.py
Log Message:
-----------
Don't attempt to determine ports at GIE container launch time if they
fail to be determined on the first attempt. They'll be determined by the
readiness check instead.
Commit: a7a4e12e79a91a2a17fa86d65077233f8cfcb35c
https://github.com/galaxyproject/galaxy/commit/a7a4e12e79a91a2a17fa86d65077…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-26 (Thu, 26 Apr 2018)
Changed paths:
M lib/galaxy/model/__init__.py
Log Message:
-----------
Fix collection element count getting lost during collection copies.
Commit: a29770ca554b5aaf8ea6533ee413fed77042a0ea
https://github.com/galaxyproject/galaxy/commit/a29770ca554b5aaf8ea6533ee413…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-27 (Fri, 27 Apr 2018)
Changed paths:
M scripts/common_startup.sh
Log Message:
-----------
Pin the version of node we use in CI, etc....
Our dependencies won't resolve under node 10 currently (because of upath at least https://github.com/anodynos/upath/blob/master/package.json#L43 but maybe other packages as well).
Commit: c7b426089aa7ec0e0ba874e03ed9dad60a9d1909
https://github.com/galaxyproject/galaxy/commit/c7b426089aa7ec0e0ba874e03ed9…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-04-27 (Fri, 27 Apr 2018)
Changed paths:
M scripts/common_startup.sh
Log Message:
-----------
Merge pull request #6000 from jmchilton/fix_build_maybe
[18.01] Backport #5972
Commit: 9da13d2d3d3a444e9cd45880496c883b30b475b0
https://github.com/galaxyproject/galaxy/commit/9da13d2d3d3a444e9cd45880496c…
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2018-04-27 (Fri, 27 Apr 2018)
Changed paths:
M lib/galaxy/model/__init__.py
Log Message:
-----------
Merge pull request #5990 from jmchilton/collection_count_fix
[18.01] Fix collection element count getting lost during collection copies.
Commit: 26ab5388ba31de646d365fbc8528a86b7dc7949a
https://github.com/galaxyproject/galaxy/commit/26ab5388ba31de646d365fbc8528…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-04-27 (Fri, 27 Apr 2018)
Changed paths:
M lib/galaxy/containers/__init__.py
M lib/galaxy/visualization/plugins/interactive_environments.py
M lib/galaxy/web/proxy/__init__.py
M lib/galaxy/webapps/galaxy/controllers/interactive_environments.py
Log Message:
-----------
Merge pull request #5930 from natefoo/gie-late-ports
[18.01] Only try to determine GIE container ports once at launch, then hand off to readiness check
Commit: bd63c04c2e1988e838a033830f60e1ad6c2d9bf7
https://github.com/galaxyproject/galaxy/commit/bd63c04c2e1988e838a033830f60…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-27 (Fri, 27 Apr 2018)
Changed paths:
M lib/galaxy/containers/__init__.py
M lib/galaxy/model/__init__.py
M lib/galaxy/visualization/plugins/interactive_environments.py
M lib/galaxy/web/proxy/__init__.py
M lib/galaxy/webapps/galaxy/controllers/interactive_environments.py
Log Message:
-----------
Merge remote-tracking branch 'origin/release_18.01' into release_18.05
Compare: https://github.com/galaxyproject/galaxy/compare/e3331817283b...bd63c04c2e19
Branch: refs/heads/release_18.01
Home: https://github.com/galaxyproject/galaxy
Commit: 50f9ca82ba158736e7ed735e3d949a65127a5111
https://github.com/galaxyproject/galaxy/commit/50f9ca82ba158736e7ed735e3d94…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-19 (Thu, 19 Apr 2018)
Changed paths:
M lib/galaxy/containers/__init__.py
M lib/galaxy/visualization/plugins/interactive_environments.py
M lib/galaxy/web/proxy/__init__.py
M lib/galaxy/webapps/galaxy/controllers/interactive_environments.py
Log Message:
-----------
Don't attempt to determine ports at GIE container launch time if they
fail to be determined on the first attempt. They'll be determined by the
readiness check instead.
Commit: 26ab5388ba31de646d365fbc8528a86b7dc7949a
https://github.com/galaxyproject/galaxy/commit/26ab5388ba31de646d365fbc8528…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-04-27 (Fri, 27 Apr 2018)
Changed paths:
M lib/galaxy/containers/__init__.py
M lib/galaxy/visualization/plugins/interactive_environments.py
M lib/galaxy/web/proxy/__init__.py
M lib/galaxy/webapps/galaxy/controllers/interactive_environments.py
Log Message:
-----------
Merge pull request #5930 from natefoo/gie-late-ports
[18.01] Only try to determine GIE container ports once at launch, then hand off to readiness check
Compare: https://github.com/galaxyproject/galaxy/compare/9da13d2d3d3a...26ab5388ba31
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 4824690ade9042c1c96de469a2c3218d2fc33c9a
https://github.com/galaxyproject/galaxy/commit/4824690ade9042c1c96de469a2c3…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-04-26 (Thu, 26 Apr 2018)
Changed paths:
M lib/galaxy/util/path/__init__.py
Log Message:
-----------
Optimize safe_walk to call realpath a lot less for typical calls...
Cuts the time required to load 100,000 FTP files into the rule builder in half on my macbook - could imagine the gains to be even bigger on a network file system?
Commit: 24b04bfef06d0de9adbff82ce42e7b486fb0c8e9
https://github.com/galaxyproject/galaxy/commit/24b04bfef06d0de9adbff82ce42e…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-04-27 (Fri, 27 Apr 2018)
Changed paths:
M lib/galaxy/util/path/__init__.py
Log Message:
-----------
Merge pull request #5995 from jmchilton/ftp_optimize
Optimize safe_walk to call realpath a lot less for typical calls...
Compare: https://github.com/galaxyproject/galaxy/compare/7d9c085b03d4...24b04bfef06d