Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: eb29adc2efd8bad0f15dc6a51b2a3cd33216b8f9
https://github.com/galaxyproject/galaxy/commit/eb29adc2efd8bad0f15dc6a51b2a…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-05-03 (Thu, 03 May 2018)
Changed paths:
M lib/galaxy/dependencies/pipfiles/default/Pipfile
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
Log Message:
-----------
Downgrade python-genomespaceclient to 0.2
Commit: eae69c26f89aa6b809a3186131f59b32d590bb9e
https://github.com/galaxyproject/galaxy/commit/eae69c26f89aa6b809a3186131f5…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-05-09 (Wed, 09 May 2018)
Changed paths:
M run_tests.sh
Log Message:
-----------
[18.05] Fix parsing last argument when running functional tests.
Causes Planemo to double test tools.
Commit: 9bc73824a5419072b65158a09c0f6c30a9c5b3f0
https://github.com/galaxyproject/galaxy/commit/9bc73824a5419072b65158a09c0f…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
M lib/galaxy/datatypes/registry.py
M lib/galaxy/datatypes/sniff.py
A test/unit/datatypes/test_datatypes_registry.py
Log Message:
-----------
[18.05] Fix matches_any() checks for dynamic compressed types.
See huge conversation on #6093.
Commit: ba1f369e2f1c124ffacd60b329364d79d63ed513
https://github.com/galaxyproject/galaxy/commit/ba1f369e2f1c124ffacd60b32936…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M lib/galaxy/web/base/controller.py
Log Message:
-----------
Encode dataset ids when loading trackster visualizations
Commit: b7f26be45fd0fa13876cfdfdd37c460b9947474b
https://github.com/galaxyproject/galaxy/commit/b7f26be45fd0fa13876cfdfdd37c…
Author: Nicola Soranzo <nsoranzo(a)tiscali.it>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M run_tests.sh
Log Message:
-----------
Merge pull request #6095 from jmchilton/fix_double_test
[18.05] Fix parsing last argument when running functional tests.
Commit: b6a22584aaed8df8ea3ffc1d1db96c65fe887878
https://github.com/galaxyproject/galaxy/commit/b6a22584aaed8df8ea3ffc1d1db9…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M lib/galaxy/web/base/controller.py
Log Message:
-----------
Merge pull request #6112 from guerler/fix_hda_access
[18.05] Encode dataset ids when loading trackster visualizations
Commit: 148d56a9c9d12df6d3d8fbe48a713f75cca6a468
https://github.com/galaxyproject/galaxy/commit/148d56a9c9d12df6d3d8fbe48a71…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M test/unit/datatypes/test_datatypes_registry.py
Log Message:
-----------
Many more matches_any tests, better categorization of them with comments.
Some of these suggested by @nsoranzo.
Commit: 8ca8ead4e592beb73ab92fa1324ee2060beb9188
https://github.com/galaxyproject/galaxy/commit/8ca8ead4e592beb73ab92fa1324e…
Author: Nicola Soranzo <nsoranzo(a)tiscali.it>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
M lib/galaxy/datatypes/registry.py
M lib/galaxy/datatypes/sniff.py
A test/unit/datatypes/test_datatypes_registry.py
Log Message:
-----------
Merge pull request #6111 from jmchilton/dynamic_compressed_types_fix_4
[18.05] Fix matches_any() checks for dynamic compressed types.
Commit: efc97a440096372d01427942cb19ac82a0d23dd3
https://github.com/galaxyproject/galaxy/commit/efc97a440096372d01427942cb19…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M lib/galaxy/dependencies/pipfiles/default/Pipfile
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
Log Message:
-----------
Merge pull request #6054 from natefoo/genomespaceclient-downgrade
[18.05] Downgrade python-genomespaceclient to 0.2
Commit: 4dedc900b56573a5bc0443daca096afa66da072b
https://github.com/galaxyproject/galaxy/commit/4dedc900b56573a5bc0443daca09…
Author: Helena Rasche <hxr(a)hx42.org>
Date: 2018-05-11 (Fri, 11 May 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/api/library_datasets.py
Log Message:
-----------
Showed up in esntry as referencing fname before assignment
Commit: 890b446974b03daa098130392ee538a1320daa16
https://github.com/galaxyproject/galaxy/commit/890b446974b03daa098130392ee5…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-05-11 (Fri, 11 May 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/api/library_datasets.py
Log Message:
-----------
Merge pull request #6119 from erasche/error-temp-lib-dl
[18.01] Showed up in sentry as referencing fname before assignment
Commit: e26691244fc28d15f7ddd8e8913508fba3786b1c
https://github.com/galaxyproject/galaxy/commit/e26691244fc28d15f7ddd8e89135…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-11 (Fri, 11 May 2018)
Changed paths:
M lib/galaxy/webapps/galaxy/api/library_datasets.py
Log Message:
-----------
Merge remote-tracking branch 'upstream/release_18.01' into release_18.05
Commit: 02e8cb65a0b4aabc6ad6f29fca2d99dd2cbe08d0
https://github.com/galaxyproject/galaxy/commit/02e8cb65a0b4aabc6ad6f29fca2d…
Author: Dannon Baker <dannon.baker(a)gmail.com>
Date: 2018-05-11 (Fri, 11 May 2018)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
M lib/galaxy/datatypes/registry.py
M lib/galaxy/datatypes/sniff.py
M lib/galaxy/dependencies/pipfiles/default/Pipfile
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
M lib/galaxy/web/base/controller.py
M lib/galaxy/webapps/galaxy/api/library_datasets.py
M run_tests.sh
A test/unit/datatypes/test_datatypes_registry.py
Log Message:
-----------
Merge remote-tracking branch 'upstream/release_18.05' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/f69760d66a46...02e8cb65a0b4
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 276a559cf44534361e48a1abddd465fce9217ab2
https://github.com/galaxyproject/galaxy/commit/276a559cf44534361e48a1abddd4…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-05-07 (Mon, 07 May 2018)
Changed paths:
M lib/galaxy/tools/verify/interactor.py
M test/api/test_libraries.py
M test/api/test_tools.py
Log Message:
-----------
Make interactor._{get,post,put,...} less repetitve
Also inject api key into params, so that we can use `json.dumps` for the
payload instead of writing json strings in python.
Commit: 346d2dca3e5b44ba6a37952b632bd1910fd5f468
https://github.com/galaxyproject/galaxy/commit/346d2dca3e5b44ba6a37952b632b…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-05-08 (Tue, 08 May 2018)
Changed paths:
M lib/galaxy/tools/verify/interactor.py
Log Message:
-----------
Merge `data` into params
I don't think we're parsing GET request payloads.
This effectively restore the get behavior prior
to the previous commit.
Commit: 835c59d109cbca3b58e396bed6ba856caaaf95cf
https://github.com/galaxyproject/galaxy/commit/835c59d109cbca3b58e396bed6ba…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-05-08 (Tue, 08 May 2018)
Changed paths:
M lib/galaxy/tools/verify/interactor.py
Log Message:
-----------
No request body for DELETE/GET, no params for POST
Commit: 0a599089fa3733a22e2f3ed7c7882046255b9a9f
https://github.com/galaxyproject/galaxy/commit/0a599089fa3733a22e2f3ed7c788…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-05-08 (Tue, 08 May 2018)
Changed paths:
M test/api/test_libraries.py
M test/api/test_tools.py
Log Message:
-----------
Don't dump json parameters
Commit: 85bf5129b2fdabf1070b475df41190b60a9004f8
https://github.com/galaxyproject/galaxy/commit/85bf5129b2fdabf1070b475df411…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-05-08 (Tue, 08 May 2018)
Changed paths:
M lib/galaxy/tools/verify/interactor.py
Log Message:
-----------
Replace mutable default argument
Commit: b68def3ebe7f4f7d8b8650b9d963d0ed8e56966a
https://github.com/galaxyproject/galaxy/commit/b68def3ebe7f4f7d8b8650b9d963…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M lib/galaxy/tools/verify/interactor.py
M test/api/test_libraries.py
M test/api/test_tools.py
Log Message:
-----------
Merge pull request #6070 from mvdbeek/improve_test_api_interactor
Make `interactor._{get,post,put,...}` less repetitive
Compare: https://github.com/galaxyproject/galaxy/compare/cb8f8322c85e...b68def3ebe7f
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/release_18.05
Home: https://github.com/galaxyproject/galaxy
Commit: 9bc73824a5419072b65158a09c0f6c30a9c5b3f0
https://github.com/galaxyproject/galaxy/commit/9bc73824a5419072b65158a09c0f…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
M lib/galaxy/datatypes/registry.py
M lib/galaxy/datatypes/sniff.py
A test/unit/datatypes/test_datatypes_registry.py
Log Message:
-----------
[18.05] Fix matches_any() checks for dynamic compressed types.
See huge conversation on #6093.
Commit: 148d56a9c9d12df6d3d8fbe48a713f75cca6a468
https://github.com/galaxyproject/galaxy/commit/148d56a9c9d12df6d3d8fbe48a71…
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M test/unit/datatypes/test_datatypes_registry.py
Log Message:
-----------
Many more matches_any tests, better categorization of them with comments.
Some of these suggested by @nsoranzo.
Commit: 8ca8ead4e592beb73ab92fa1324ee2060beb9188
https://github.com/galaxyproject/galaxy/commit/8ca8ead4e592beb73ab92fa1324e…
Author: Nicola Soranzo <nsoranzo(a)tiscali.it>
Date: 2018-05-10 (Thu, 10 May 2018)
Changed paths:
M config/datatypes_conf.xml.sample
M lib/galaxy/datatypes/binary.py
M lib/galaxy/datatypes/registry.py
M lib/galaxy/datatypes/sniff.py
A test/unit/datatypes/test_datatypes_registry.py
Log Message:
-----------
Merge pull request #6111 from jmchilton/dynamic_compressed_types_fix_4
[18.05] Fix matches_any() checks for dynamic compressed types.
Compare: https://github.com/galaxyproject/galaxy/compare/b6a22584aaed...8ca8ead4e592
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.