lists.galaxyproject.org
Sign In
Sign Up
Sign In
Sign Up
Manage this list
×
Keyboard Shortcuts
Thread View
j
: Next unread message
k
: Previous unread message
j a
: Jump to all threads
j l
: Jump to MailingList overview
2024
April
March
February
January
2023
December
November
October
September
August
July
June
May
April
March
February
January
2022
December
November
October
September
August
July
June
May
April
March
February
January
2021
December
November
October
September
August
July
June
May
April
March
February
January
2020
December
November
October
September
August
July
June
May
April
March
February
January
2019
December
November
October
September
August
July
June
May
April
March
February
January
2018
December
November
October
September
August
July
June
May
April
March
February
January
2017
December
November
October
September
August
July
June
May
April
March
February
January
2016
December
November
October
September
August
July
June
May
April
March
February
January
2015
December
November
October
September
August
July
June
May
April
March
February
January
2014
December
November
October
September
August
July
June
May
April
March
February
January
2013
December
November
October
September
August
July
June
May
April
March
February
January
2012
December
November
October
September
August
July
June
May
April
March
February
January
2011
December
November
October
September
August
July
June
May
April
March
February
January
2010
December
November
October
September
August
July
June
May
List overview
Download
galaxy-commits
May 2018
----- 2024 -----
April 2024
March 2024
February 2024
January 2024
----- 2023 -----
December 2023
November 2023
October 2023
September 2023
August 2023
July 2023
June 2023
May 2023
April 2023
March 2023
February 2023
January 2023
----- 2022 -----
December 2022
November 2022
October 2022
September 2022
August 2022
July 2022
June 2022
May 2022
April 2022
March 2022
February 2022
January 2022
----- 2021 -----
December 2021
November 2021
October 2021
September 2021
August 2021
July 2021
June 2021
May 2021
April 2021
March 2021
February 2021
January 2021
----- 2020 -----
December 2020
November 2020
October 2020
September 2020
August 2020
July 2020
June 2020
May 2020
April 2020
March 2020
February 2020
January 2020
----- 2019 -----
December 2019
November 2019
October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
April 2019
March 2019
February 2019
January 2019
----- 2018 -----
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
----- 2017 -----
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
----- 2016 -----
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
----- 2015 -----
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
----- 2014 -----
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
----- 2013 -----
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
----- 2012 -----
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
----- 2011 -----
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
----- 2010 -----
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
galaxy-commits@lists.galaxyproject.org
1 participants
217 discussions
Start a n
N
ew thread
[galaxyproject/galaxy] 6373d3: fixed typo
by GitHub
09 May '18
09 May '18
Branch: refs/heads/dev Home:
https://github.com/galaxyproject/galaxy
Commit: 6373d352a83cb1a1f530cdad288ee90fb2b3ec48
https://github.com/galaxyproject/galaxy/commit/6373d352a83cb1a1f530cdad288e…
Author: M Bernt <m.bernt(a)ufz.de> Date: 2018-05-09 (Wed, 09 May 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form.js Log Message: ----------- fixed typo Commit: a53551448b756cc90305fad25101a0969b59c292
https://github.com/galaxyproject/galaxy/commit/a53551448b756cc90305fad25101…
Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2018-05-09 (Wed, 09 May 2018) Changed paths: M client/galaxy/scripts/mvc/tool/tool-form.js Log Message: ----------- Merge pull request #6094 from bernt-matthias/topic/collection-typo fixed small typo Compare:
https://github.com/galaxyproject/galaxy/compare/c67c4b4b82dd...a53551448b75
**NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
GitHub.com
on January 31st, 2019.
1
0
0
0
[galaxyproject/usegalaxy-playbook] 79f7ea: Enable client building on MTS and work around node...
by GitHub
09 May '18
09 May '18
Branch: refs/heads/master Home:
https://github.com/galaxyproject/usegalaxy-playbook
Commit: 79f7ea0d7529f4abde999db569a344c14fa0136c
https://github.com/galaxyproject/usegalaxy-playbook/commit/79f7ea0d7529f4ab…
Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-09 (Wed, 09 May 2018) Changed paths: M env/common/_inc_client_build.yml A env/toolshed/_inc_client_build.yml Log Message: ----------- Enable client building on MTS and work around nodejs/node#20285 nodejs/node#20325 Commit: 08ba973f63f59b58c96749d955cc2f38810fa3c3
https://github.com/galaxyproject/usegalaxy-playbook/commit/08ba973f63f59b58…
Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-09 (Wed, 09 May 2018) Changed paths: M env/toolshed/group_vars/toolshedservers/vars.yml Log Message: ----------- Update MTS to 18.05 Compare:
https://github.com/galaxyproject/usegalaxy-playbook/compare/e14ec11f0429...…
**NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
GitHub.com
on January 31st, 2019.
1
0
0
0
[galaxyproject/usegalaxy-playbook] e14ec1: Update fastx-toolkit to version 0.0.14
by GitHub
08 May '18
08 May '18
Branch: refs/heads/master Home:
https://github.com/galaxyproject/usegalaxy-playbook
Commit: e14ec11f0429ebccc527740ef9469333a8aec730
https://github.com/galaxyproject/usegalaxy-playbook/commit/e14ec11f0429ebcc…
Author: Dave B <dave(a)bx.psu.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Update fastx-toolkit to version 0.0.14 **NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
GitHub.com
on January 31st, 2019.
1
0
0
0
[galaxyproject/galaxy] 1083fa: [18.05] Fix sniff validation for dynamic compresse...
by GitHub
08 May '18
08 May '18
Branch: refs/heads/release_18.05 Home:
https://github.com/galaxyproject/galaxy
Commit: 1083fa4ddb611300892516d1947dfd975e60978e
https://github.com/galaxyproject/galaxy/commit/1083fa4ddb611300892516d1947d…
Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- [18.05] Fix sniff validation for dynamic compressed types. This was broken in a bad PR merge/rebase process since the validation mode didn't exist when the initial dynamic compressed types PR was opened. Commit: fba70530abf4470e98fc6f1d56d770f33092530b
https://github.com/galaxyproject/galaxy/commit/fba70530abf4470e98fc6f1d56d7…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- Merge pull request #6091 from jmchilton/sniff_prefix_fixes [18.05] Fix sniff validation for dynamic compressed types. Compare:
https://github.com/galaxyproject/galaxy/compare/de5ed28120fd...fba70530abf4
**NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
GitHub.com
on January 31st, 2019.
1
0
0
0
[galaxyproject/galaxy] fb291e: check memory later
by GitHub
08 May '18
08 May '18
Branch: refs/heads/release_18.01 Home:
https://github.com/galaxyproject/galaxy
Commit: fb291eb530858c79c83be10502d4b78b585d77cb
https://github.com/galaxyproject/galaxy/commit/fb291eb530858c79c83be10502d4…
Author: E Rasche <hxr(a)hx42.org> Date: 2018-04-19 (Thu, 19 Apr 2018) Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- check memory later Commit: 765a834497ebfc555ac0de98cbbae9ad395f1c49
https://github.com/galaxyproject/galaxy/commit/765a834497ebfc555ac0de98cbba…
Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-05-07 (Mon, 07 May 2018) Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Memory statement and cd both before instrument_pre_commands Commit: 098f638d26355abe54c83bd43b8daf1078e1ccd3
https://github.com/galaxyproject/galaxy/commit/098f638d26355abe54c83bd43b8d…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Merge pull request #5925 from erasche/cd-before-metrics [18.01] jobscript - check memory later Compare:
https://github.com/galaxyproject/galaxy/compare/8255d1ccc819...098f638d2635
**NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
GitHub.com
on January 31st, 2019.
1
0
0
0
[galaxyproject/galaxy] e55cf0: reword text feedback on viz job submission
by GitHub
08 May '18
08 May '18
Branch: refs/heads/release_18.05 Home:
https://github.com/galaxyproject/galaxy
Commit: e55cf0114f6f230a1b7935a73336546efd9b57b2
https://github.com/galaxyproject/galaxy/commit/e55cf0114f6f230a1b7935a73336…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js Log Message: ----------- reword text feedback on viz job submission Commit: de5ed28120fdd35495c837148c48526aec7a45d8
https://github.com/galaxyproject/galaxy/commit/de5ed28120fdd35495c837148c48…
Author: Aysam Guerler <aysam.guerler(a)gmail.com> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/jobs.js Log Message: ----------- Merge pull request #6090 from martenson/text-adjustment reword text feedback on viz job submission Compare:
https://github.com/galaxyproject/galaxy/compare/7b558ddc5965...de5ed28120fd
**NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
GitHub.com
on January 31st, 2019.
1
0
0
0
[galaxyproject/usegalaxy-playbook] 664a67: update TTS
by GitHub
08 May '18
08 May '18
Branch: refs/heads/master Home:
https://github.com/galaxyproject/usegalaxy-playbook
Commit: 664a6765d19ac372d4cbe22cab808a29b3f77732
https://github.com/galaxyproject/usegalaxy-playbook/commit/664a6765d19ac372…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M env/testtoolshed/group_vars/toolshedservers/vars.yml Log Message: ----------- update TTS **NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
GitHub.com
on January 31st, 2019.
1
0
0
0
[galaxyproject/galaxy] 483e87: Fix dropdown zindex handling for history panels
by GitHub
08 May '18
08 May '18
Branch: refs/heads/release_18.05 Home:
https://github.com/galaxyproject/galaxy
Commit: 483e879ca6fee1e58b6f9c99bf07291064ad5065
https://github.com/galaxyproject/galaxy/commit/483e879ca6fee1e58b6f9c99bf07…
Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-05-07 (Mon, 07 May 2018) Changed paths: M client/galaxy/style/scss/history.scss M static/style/blue/base.css Log Message: ----------- Fix dropdown zindex handling for history panels Commit: 7cc01380afd017c5cac2af2b2d735b2265774a68
https://github.com/galaxyproject/galaxy/commit/7cc01380afd017c5cac2af2b2d73…
Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-05-07 (Mon, 07 May 2018) Changed paths: M client/galaxy/scripts/mvc/history/hdca-li-edit.js Log Message: ----------- Update bs4 style dropdowns, minor cleanup Commit: 7b558ddc5965f6223c862680341e81b345c73d82
https://github.com/galaxyproject/galaxy/commit/7b558ddc5965f6223c862680341e…
Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M client/galaxy/scripts/mvc/history/hdca-li-edit.js M client/galaxy/style/scss/history.scss M static/style/blue/base.css Log Message: ----------- Merge pull request #6079 from dannon/dropdown-zindex-fix [18.05] Dropdown zindex fix Compare:
https://github.com/galaxyproject/galaxy/compare/7d4109bac158...7b558ddc5965
**NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
GitHub.com
on January 31st, 2019.
1
0
0
0
[galaxyproject/infrastructure-playbook] 880fa1: Add sandbox user to docker group on stratum0
by GitHub
08 May '18
08 May '18
Branch: refs/heads/master Home:
https://github.com/galaxyproject/infrastructure-playbook
Commit: 880fa1080588dc830f10973dcaa0ab3a70de18ac
https://github.com/galaxyproject/infrastructure-playbook/commit/880fa108058…
Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M
env/galaxy/host_vars/cvmfs0-psu0.galaxyproject.org/vars.yml
Log Message: ----------- Add sandbox user to docker group on stratum0 **NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
GitHub.com
on January 31st, 2019.
1
0
0
0
[galaxyproject/usegalaxy-playbook] d3901e: Update text processing tools on Test
by GitHub
08 May '18
08 May '18
Branch: refs/heads/master Home:
https://github.com/galaxyproject/usegalaxy-playbook
Commit: d3901e9762ed456fdb3ab22ab89a7e5f434491a0
https://github.com/galaxyproject/usegalaxy-playbook/commit/d3901e9762ed456f…
Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M env/test/files/galaxy/var/integrated_tool_panel.xml M env/test/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Update text processing tools on Test Commit: 6b5301798e5a50ccef030cbda0b5489f0ed8736b
https://github.com/galaxyproject/usegalaxy-playbook/commit/6b5301798e5a50cc…
Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M env/test/files/galaxy/galaxy_version.yml M env/test/group_vars/all.yml Log Message: ----------- Run a branch of my repo on Test for testing job destination config params Commit: 21dbcefb57df0edd6af5a6c8e2e02018cb061fd0
https://github.com/galaxyproject/usegalaxy-playbook/commit/21dbcefb57df0edd…
Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-08 (Tue, 08 May 2018) Changed paths: M env/test/group_vars/galaxyservers/vars.yml M env/test/templates/galaxy/config/job_conf.xml.j2 Log Message: ----------- Test running tools w/ Singularity on Test Compare:
https://github.com/galaxyproject/usegalaxy-playbook/compare/55bc28e603e6...…
**NOTE:** This service been marked for deprecation:
https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from
GitHub.com
on January 31st, 2019.
1
0
0
0
← Newer
1
...
14
15
16
17
18
19
20
21
22
Older →
Jump to page:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
Results per page:
10
25
50
100
200