Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: a00bd8bf8eb22bfb38be9146c244fd22f60d3a8f
https://github.com/galaxyproject/galaxy/commit/a00bd8bf8eb22bfb38be9146c244…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-21 (Mon, 21 May 2018)
Changed paths:
M doc/parse_gx_xsd.py
Log Message:
-----------
escape pipe in details
so we can have pipes inside markdown tables
Commit: 01d2a5c2ae7e5a1f3b5fcfdd2b1eca766a69d5ec
https://github.com/galaxyproject/galaxy/commit/01d2a5c2ae7e5a1f3b5fcfdd2b1e…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M lib/galaxy/jobs/runners/slurm.py
Log Message:
-----------
Fix parsing of `scontrol show job`
Fix the following traceback:
```
galaxy.jobs.runners.slurm ERROR 2018-05-22 13:01:07,050 (1024816/14094939) Failure in SLURM _complete_terminal_job(), job final state will be: failed
Traceback (most recent call last):
File "/tgac/services/galaxy/prod/galaxy/lib/galaxy/jobs/runners/slurm.py", line 86, in _complete_terminal_job
slurm_state = _get_slurm_state()
File "/tgac/services/galaxy/prod/galaxy/lib/galaxy/jobs/runners/slurm.py", line 81, in _get_slurm_state
job_info_dict = dict([out_param.split('=', 1) for out_param in stdout.split()])
ValueError: dictionary update sequence element #52 has length 1; 2 is required
```
Commit: 939c3be132b9cd606cd5f1189293f15000a486d8
https://github.com/galaxyproject/galaxy/commit/939c3be132b9cd606cd5f1189293…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M lib/galaxy/jobs/runners/slurm.py
Log Message:
-----------
Merge pull request #6194 from nsoranzo/fix__get_slurm_state
[18.01] Fix parsing of `scontrol show job`
Commit: 9a840537cb5037e280a8db14125a46fbb422d305
https://github.com/galaxyproject/galaxy/commit/9a840537cb5037e280a8db14125a…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M doc/parse_gx_xsd.py
Log Message:
-----------
pass the check for pipe presence in details
the docs build fine and the table renders fine too
Commit: 6f79f28f1793c135b1e0f332987fd62e9dea93b6
https://github.com/galaxyproject/galaxy/commit/6f79f28f1793c135b1e0f332987f…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M doc/parse_gx_xsd.py
Log Message:
-----------
Merge pull request #6187 from martenson/fix-doc-markdown-table
[18.01] escape pipe while parsing xsd details
Commit: a5297af19017a009fe887a5c04dae281ab234cae
https://github.com/galaxyproject/galaxy/commit/a5297af19017a009fe887a5c04da…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M doc/parse_gx_xsd.py
M lib/galaxy/jobs/runners/slurm.py
Log Message:
-----------
Merge branch 'release_18.01' into release_18.05
Commit: bffeacad081678dc56eeb0af54c8e4eb8443e5ce
https://github.com/galaxyproject/galaxy/commit/bffeacad081678dc56eeb0af54c8…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M doc/parse_gx_xsd.py
M lib/galaxy/jobs/runners/slurm.py
Log Message:
-----------
Merge branch 'release_18.05' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/d47e5f25e444...bffeacad0816
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/release_18.05
Home: https://github.com/galaxyproject/galaxy
Commit: a00bd8bf8eb22bfb38be9146c244fd22f60d3a8f
https://github.com/galaxyproject/galaxy/commit/a00bd8bf8eb22bfb38be9146c244…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-21 (Mon, 21 May 2018)
Changed paths:
M doc/parse_gx_xsd.py
Log Message:
-----------
escape pipe in details
so we can have pipes inside markdown tables
Commit: 01d2a5c2ae7e5a1f3b5fcfdd2b1eca766a69d5ec
https://github.com/galaxyproject/galaxy/commit/01d2a5c2ae7e5a1f3b5fcfdd2b1e…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M lib/galaxy/jobs/runners/slurm.py
Log Message:
-----------
Fix parsing of `scontrol show job`
Fix the following traceback:
```
galaxy.jobs.runners.slurm ERROR 2018-05-22 13:01:07,050 (1024816/14094939) Failure in SLURM _complete_terminal_job(), job final state will be: failed
Traceback (most recent call last):
File "/tgac/services/galaxy/prod/galaxy/lib/galaxy/jobs/runners/slurm.py", line 86, in _complete_terminal_job
slurm_state = _get_slurm_state()
File "/tgac/services/galaxy/prod/galaxy/lib/galaxy/jobs/runners/slurm.py", line 81, in _get_slurm_state
job_info_dict = dict([out_param.split('=', 1) for out_param in stdout.split()])
ValueError: dictionary update sequence element #52 has length 1; 2 is required
```
Commit: 939c3be132b9cd606cd5f1189293f15000a486d8
https://github.com/galaxyproject/galaxy/commit/939c3be132b9cd606cd5f1189293…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M lib/galaxy/jobs/runners/slurm.py
Log Message:
-----------
Merge pull request #6194 from nsoranzo/fix__get_slurm_state
[18.01] Fix parsing of `scontrol show job`
Commit: 9a840537cb5037e280a8db14125a46fbb422d305
https://github.com/galaxyproject/galaxy/commit/9a840537cb5037e280a8db14125a…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M doc/parse_gx_xsd.py
Log Message:
-----------
pass the check for pipe presence in details
the docs build fine and the table renders fine too
Commit: 6f79f28f1793c135b1e0f332987fd62e9dea93b6
https://github.com/galaxyproject/galaxy/commit/6f79f28f1793c135b1e0f332987f…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M doc/parse_gx_xsd.py
Log Message:
-----------
Merge pull request #6187 from martenson/fix-doc-markdown-table
[18.01] escape pipe while parsing xsd details
Commit: a5297af19017a009fe887a5c04dae281ab234cae
https://github.com/galaxyproject/galaxy/commit/a5297af19017a009fe887a5c04da…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M doc/parse_gx_xsd.py
M lib/galaxy/jobs/runners/slurm.py
Log Message:
-----------
Merge branch 'release_18.01' into release_18.05
Compare: https://github.com/galaxyproject/galaxy/compare/440f17875f6b...a5297af19017
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/release_18.01
Home: https://github.com/galaxyproject/galaxy
Commit: 01d2a5c2ae7e5a1f3b5fcfdd2b1eca766a69d5ec
https://github.com/galaxyproject/galaxy/commit/01d2a5c2ae7e5a1f3b5fcfdd2b1e…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M lib/galaxy/jobs/runners/slurm.py
Log Message:
-----------
Fix parsing of `scontrol show job`
Fix the following traceback:
```
galaxy.jobs.runners.slurm ERROR 2018-05-22 13:01:07,050 (1024816/14094939) Failure in SLURM _complete_terminal_job(), job final state will be: failed
Traceback (most recent call last):
File "/tgac/services/galaxy/prod/galaxy/lib/galaxy/jobs/runners/slurm.py", line 86, in _complete_terminal_job
slurm_state = _get_slurm_state()
File "/tgac/services/galaxy/prod/galaxy/lib/galaxy/jobs/runners/slurm.py", line 81, in _get_slurm_state
job_info_dict = dict([out_param.split('=', 1) for out_param in stdout.split()])
ValueError: dictionary update sequence element #52 has length 1; 2 is required
```
Commit: 939c3be132b9cd606cd5f1189293f15000a486d8
https://github.com/galaxyproject/galaxy/commit/939c3be132b9cd606cd5f1189293…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
M lib/galaxy/jobs/runners/slurm.py
Log Message:
-----------
Merge pull request #6194 from nsoranzo/fix__get_slurm_state
[18.01] Fix parsing of `scontrol show job`
Compare: https://github.com/galaxyproject/galaxy/compare/bd4f562005e2...939c3be132b9
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/master
Home: https://github.com/galaxyproject/infrastructure-playbook
Commit: 1fbb465b650947c950e9cdc55afffb7523eb7b90
https://github.com/galaxyproject/infrastructure-playbook/commit/1fbb465b650…
Author: Nate Coraor <nate(a)bx.psu.edu>
Date: 2018-05-22 (Tue, 22 May 2018)
Changed paths:
R env/jsdocker/.snapshot_base.yml.swp
M env/jsdocker/_inc_spawn.yml
M env/jsdocker/group_vars/all/vars.yml
M env/jsdocker/group_vars/baseinstances.yml
M env/jsdocker/group_vars/imageinstances.yml
M env/jsdocker/launch_test_instance.yml
M env/jsdocker/snapshot_base.yml
M roles/docker/tasks/install_debian.yml
M roles/docker/tasks/install_redhat.yml
Log Message:
-----------
Make it possible to run Jetstream Swarm nodes w/o a separate volume.
Update the image and run in an m1.medium.
**NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.