[galaxyproject/galaxy] ea6d26: Remove fixed color from ui styles
by GitHub
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: ea6d26923fd03b8d4aeea2beafe56519210faefc
https://github.com/galaxyproject/galaxy/commit/ea6d26923fd03b8d4aeea2beaf...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M client/galaxy/style/scss/ui.scss
Log Message:
-----------
Remove fixed color from ui styles
Commit: 2a3bd642f58c32ae6a763f6b4fa1fc1c2985e9db
https://github.com/galaxyproject/galaxy/commit/2a3bd642f58c32ae6a763f6b4f...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M client/galaxy/style/scss/upload.scss
Log Message:
-----------
Use panel background for upload button initial background
Commit: 8cabc95a4a48b1bdfbd5618d96497c6d45ee4092
https://github.com/galaxyproject/galaxy/commit/8cabc95a4a48b1bdfbd5618d96...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M client/galaxy/style/scss/upload.scss
Log Message:
-----------
Use default text color for upload paste field
Commit: 55b22bee08fefaec45c7046e96679f830d3a0f03
https://github.com/galaxyproject/galaxy/commit/55b22bee08fefaec45c7046e96...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M client/galaxy/style/scss/frame.scss
Log Message:
-----------
Use theme colors for scratchbook
Commit: 535c2ae5fbdaec72957075f4a6d6a5890d7526de
https://github.com/galaxyproject/galaxy/commit/535c2ae5fbdaec72957075f4a6...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M client/galaxy/style/scss/charts.scss
Log Message:
-----------
Use panel button color in charts
Commit: d5539a4472f5b82afb4f1ce2478a32bef9327c7b
https://github.com/galaxyproject/galaxy/commit/d5539a4472f5b82afb4f1ce247...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
Log Message:
-----------
Replace a subset of fixed color in base styles
Commit: 63fe99662870834baa00bedc6c7bc8f462fe343f
https://github.com/galaxyproject/galaxy/commit/63fe99662870834baa00bedc6c...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
Log Message:
-----------
Replace footer text color
Commit: 76a0bea2627774e93985df5a50cfd95575372f9b
https://github.com/galaxyproject/galaxy/commit/76a0bea2627774e93985df5a50...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
M templates/webapps/galaxy/workflow/editor.mako
Log Message:
-----------
Remove custom tool title style variation
Commit: 58926ae2fe81fdc60237c1800e5662b696b472da
https://github.com/galaxyproject/galaxy/commit/58926ae2fe81fdc60237c1800e...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
Log Message:
-----------
Remove unused styles, reuse existing colors in base styles
Commit: 17aa51cb85a084e57d99ca70c208bca2dc8079af
https://github.com/galaxyproject/galaxy/commit/17aa51cb85a084e57d99ca70c2...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/theme/blue.scss
Log Message:
-----------
Introduce brand color parameters, leave actual ui colors unchanged
Commit: f1ca1a92156531bf0b269de12f3c87cfc7e722b8
https://github.com/galaxyproject/galaxy/commit/f1ca1a92156531bf0b269de12f...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/theme/blue.scss
Log Message:
-----------
Replace with actual color values
Commit: f806e7b4f1c60d826c8604a725d52a5c78cf2e78
https://github.com/galaxyproject/galaxy/commit/f806e7b4f1c60d826c8604a725...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/frame.scss
M client/galaxy/style/scss/theme/blue.scss
M client/galaxy/style/scss/tour.scss
Log Message:
-----------
Consolidate base colors
Commit: d8801ecd595142166fa41afbdfa18fa622fb4915
https://github.com/galaxyproject/galaxy/commit/d8801ecd595142166fa41afbdf...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/theme/blue.scss
Log Message:
-----------
Replace fixed masthead toggle color
Commit: 3bce850b05599622eb876c51be8504f7d9c69134
https://github.com/galaxyproject/galaxy/commit/3bce850b05599622eb876c51be...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/theme/blue.scss
M client/galaxy/style/scss/ui.scss
Log Message:
-----------
Remove duplicate border color
Commit: 8cce43838bda9b56a7448ccf1d37e18571ae442f
https://github.com/galaxyproject/galaxy/commit/8cce43838bda9b56a7448ccf1d...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/theme/blue.scss
Log Message:
-----------
Consolidate panel related footer color, remove duplicates
Commit: 85713f4d4dbc15f6e6a04b55929b64f2d368774c
https://github.com/galaxyproject/galaxy/commit/85713f4d4dbc15f6e6a04b5592...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/theme/blue.scss
Log Message:
-----------
Fix table accent color
Commit: 2e4f5fb52fc48c6be921582805194d1ba9f9fc35
https://github.com/galaxyproject/galaxy/commit/2e4f5fb52fc48c6be921582805...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/theme/blue.scss
Log Message:
-----------
Fix unused colors
Commit: daf601e8342e2fabe05f9b45ed4a3f71b7bd22ee
https://github.com/galaxyproject/galaxy/commit/daf601e8342e2fabe05f9b45ed...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
Log Message:
-----------
Remove unused input style specs
Commit: 9d0d1231efd16c95ae1da0e90338349002172444
https://github.com/galaxyproject/galaxy/commit/9d0d1231efd16c95ae1da0e903...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/theme/blue.scss
M client/galaxy/style/scss/ui.scss
Log Message:
-----------
Resolve background panel portlet contrast
Commit: 5a36b9dd2cc2091bf278ace6ee78e551a3e87089
https://github.com/galaxyproject/galaxy/commit/5a36b9dd2cc2091bf278ace6ee...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M static/welcome.html.sample
Log Message:
-----------
Remove rounded borders from welcome box
Commit: 2d9ccf5e9fdae128938827447781a50b73795ffc
https://github.com/galaxyproject/galaxy/commit/2d9ccf5e9fdae1289388274477...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/ui/search-input.scss
Log Message:
-----------
Fix tool search icon position
Commit: e6cd79bd424e3f8126d1ef5fe7bc29b720b000e1
https://github.com/galaxyproject/galaxy/commit/e6cd79bd424e3f8126d1ef5fe7...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/frame.scss
M client/galaxy/style/scss/theme/blue.scss
M client/galaxy/style/scss/tour.scss
Log Message:
-----------
Consolidate base color
Commit: b998553b3afa9c5a88e70ffc908b0d3283336b45
https://github.com/galaxyproject/galaxy/commit/b998553b3afa9c5a88e70ffc90...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/frame.scss
M client/galaxy/style/scss/theme/blue.scss
M client/galaxy/style/scss/ui.scss
Log Message:
-----------
Consolidate text and border colors
Fix
Commit: b6271da34db8156ffd189ebd313f4dd2f5b45cda
https://github.com/galaxyproject/galaxy/commit/b6271da34db8156ffd189ebd31...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/scripts/mvc/grid/grid-template.js
M client/galaxy/style/scss/base.scss
Log Message:
-----------
Fix grid search field style
Commit: f30989343a5435cd59a68d3108e5ff1659022223
https://github.com/galaxyproject/galaxy/commit/f30989343a5435cd59a68d3108...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-11 (Fri, 11 Jan 2019)
Changed paths:
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/theme/blue.scss
Log Message:
-----------
Fix alert text level, fix search field background
Commit: 34de1db38acdd699c764a3ce5bb2fab03382bc13
https://github.com/galaxyproject/galaxy/commit/34de1db38acdd699c764a3ce5b...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-12 (Sat, 12 Jan 2019)
Changed paths:
M client/galaxy/style/scss/theme/blue.scss
Log Message:
-----------
Fix running status brightness
Commit: 258975879b95f95afeb138350747d3e1d7a9e421
https://github.com/galaxyproject/galaxy/commit/258975879b95f95afeb1383507...
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2019-01-14 (Mon, 14 Jan 2019)
Changed paths:
M client/galaxy/scripts/qunit/tests/form_tests.js
Log Message:
-----------
Fix color related test case
Commit: 107f67495713ea71dd97e9f83656f4ded8dccc9f
https://github.com/galaxyproject/galaxy/commit/107f67495713ea71dd97e9f836...
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2019-01-15 (Tue, 15 Jan 2019)
Changed paths:
M client/galaxy/scripts/mvc/grid/grid-template.js
M client/galaxy/scripts/qunit/tests/form_tests.js
M client/galaxy/style/scss/base.scss
M client/galaxy/style/scss/charts.scss
M client/galaxy/style/scss/frame.scss
M client/galaxy/style/scss/theme/blue.scss
M client/galaxy/style/scss/tour.scss
M client/galaxy/style/scss/ui.scss
M client/galaxy/style/scss/ui/search-input.scss
M client/galaxy/style/scss/upload.scss
M static/welcome.html.sample
M templates/webapps/galaxy/workflow/editor.mako
Log Message:
-----------
Merge pull request #7203 from guerler/color_handling
Replace custom UI colors with equivalent theme colors, consolidate color handling
Compare: https://github.com/galaxyproject/galaxy/compare/e42dcfab2a93...107f67495713
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
4 years
[galaxyproject/galaxy] d5dea3: Pin pysam to 0.15.2 . Update all dependencies
by GitHub
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: d5dea33a86a79334b831776529956105c173673b
https://github.com/galaxyproject/galaxy/commit/d5dea33a86a79334b831776529...
Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk>
Date: 2019-01-14 (Mon, 14 Jan 2019)
Changed paths:
M lib/galaxy/dependencies/pipfiles/default/Pipfile
M lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
Log Message:
-----------
Pin pysam to 0.15.2 . Update all dependencies
with `make update-dependencies` using pipenv 2018.11.26 .
Commit: ce5895f585878a8952e8cda7df952027b2c48c11
https://github.com/galaxyproject/galaxy/commit/ce5895f585878a8952e8cda7df...
Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk>
Date: 2019-01-14 (Mon, 14 Jan 2019)
Changed paths:
M doc/source/conf.py
Log Message:
-----------
Update recommonmark configuration in Sphinx
See https://github.com/rtfd/recommonmark/pull/113
Commit: 4bb6f18b30d850019230cd4e347b574ac0593052
https://github.com/galaxyproject/galaxy/commit/4bb6f18b30d850019230cd4e34...
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-01-14 (Mon, 14 Jan 2019)
Changed paths:
M doc/source/conf.py
Log Message:
-----------
Do not build rst files starting with '_'
Commit: 46b3539a35c09fc3d8d2d9b2a7ec7fefbc53c95e
https://github.com/galaxyproject/galaxy/commit/46b3539a35c09fc3d8d2d9b2a7...
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-01-14 (Mon, 14 Jan 2019)
Changed paths:
M doc/source/admin/conda_faq.rst
M doc/source/admin/special_topics/bug_reports.rst
M doc/source/admin/special_topics/webhooks.rst
M doc/source/dev/index.rst
M doc/source/releases/16.07_announce.rst
M doc/source/releases/16.10.rst
M doc/source/releases/16.10_announce.rst
M doc/source/releases/17.01_announce.rst
M doc/source/releases/18.01.rst
Log Message:
-----------
Fix doc bugs
Use proper cross-referencing with `:doc:`.
Commit: 891576627515febaa749981fbb7e0aa850df495a
https://github.com/galaxyproject/galaxy/commit/891576627515febaa749981fbb...
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-01-14 (Mon, 14 Jan 2019)
Changed paths:
M doc/source/conf.py
Log Message:
-----------
Do not exclude releases docs when using ``GALAXY_DOCS_SKIP_SOURCE``
They are quite fast to build.
Commit: 1f3eec2879e356a671a2280b3589e938c391c668
https://github.com/galaxyproject/galaxy/commit/1f3eec2879e356a671a2280b35...
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-01-15 (Tue, 15 Jan 2019)
Changed paths:
M test/api/test_galaxy_interactor.py
Log Message:
-----------
Fix ``GalaxyInteractorBackwardCompatTestCase.test_local_test_data_download`` API test
Broken in commit bf851269c30996876c0614e7a5b57da495c44ac9 .
Commit: b23a2a44d99c9d68def546bda3bbf0d7059c8f95
https://github.com/galaxyproject/galaxy/commit/b23a2a44d99c9d68def546bda3...
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-01-15 (Tue, 15 Jan 2019)
Changed paths:
M lib/galaxy/web/framework/base.py
M lib/galaxy/webhooks/__init__.py
Log Message:
-----------
Fix ``UnicodeDecodeError`` exception under Python3
Fix the following exception reported in the startup logs:
```
galaxy.webhooks ERROR 2019-01-15 11:31:18,095 'ascii' codec can't decode byte 0xef in position 8291: ordinal not in range(128)
Traceback (most recent call last):
File "/galaxy/lib/galaxy/webhooks/__init__.py", line 62, in load_webhooks
self.load_webhook_from_config(directory, config_file_path)
File "/galaxy/lib/galaxy/webhooks/__init__.py", line 96, in load_webhook_from_config
webhook.script = file.read()
File "/galaxy_venv3/lib/python3.5/encodings/ascii.py", line 26, in decode
return codecs.ascii_decode(input, self.errors)[0]
UnicodeDecodeError: 'ascii' codec can't decode byte 0xef in position 8291: ordinal not in range(128)
```
Also rename variables from `file` (Python2 standard library function and
class) to `fh`.
Commit: f70d24afb5ed151237d7c7e0491b5db9337fdefc
https://github.com/galaxyproject/galaxy/commit/f70d24afb5ed151237d7c7e049...
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2019-01-15 (Tue, 15 Jan 2019)
Changed paths:
M lib/galaxy/webapps/galaxy/api/datasets.py
M test/api/test_histories.py
Log Message:
-----------
Python3: open 2 files in binary mode
Fix `HistoriesApiTestCase.test_import_metadata_regeneration()` API test
introduced in commit 38f7aded0b11f4c75f2265ba95ed674e8d655e7d .
See:
https://jenkins.galaxyproject.org/job/docker-api-py3/193/testReport/junit...
Commit: e42dcfab2a930e8d736b021ff69cb3428a77663e
https://github.com/galaxyproject/galaxy/commit/e42dcfab2a930e8d736b021ff6...
Author: Marius van den Beek <m.vandenbeek(a)gmail.com>
Date: 2019-01-15 (Tue, 15 Jan 2019)
Changed paths:
M doc/source/admin/conda_faq.rst
M doc/source/admin/special_topics/bug_reports.rst
M doc/source/admin/special_topics/webhooks.rst
M doc/source/conf.py
M doc/source/dev/index.rst
M doc/source/releases/16.07_announce.rst
M doc/source/releases/16.10.rst
M doc/source/releases/16.10_announce.rst
M doc/source/releases/17.01_announce.rst
M doc/source/releases/18.01.rst
M lib/galaxy/dependencies/pipfiles/default/Pipfile
M lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt
M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt
M lib/galaxy/web/framework/base.py
M lib/galaxy/webapps/galaxy/api/datasets.py
M lib/galaxy/webhooks/__init__.py
M test/api/test_galaxy_interactor.py
M test/api/test_histories.py
Log Message:
-----------
Merge pull request #7215 from nsoranzo/recommonmark_0.5.0
Dependency update and doc fixes
Compare: https://github.com/galaxyproject/galaxy/compare/c6a681fa8bb2...e42dcfab2a93
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
4 years