- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 1f0ec9: Use a lock on cleanup, expire_tool and cache_tool
by Nicola Soranzo 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 1f0ec9424fd116a1f6896bf648d16a309f1e6847 https://github.com/galaxyproject/galaxy/commit/1f0ec9424fd116a1f6896bf648d1… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M lib/galaxy/tools/cache.py M test/unit/tools/test_toolbox.py Log Message: ----------- Use a lock on cleanup, expire_tool and cache_tool This should fix https://github.com/galaxyproject/galaxy/issues/7444. Commit: 2d7b3e32d300ba33b0dadd3b8ff1cbec6b98a9bb https://github.com/galaxyproject/galaxy/commit/2d7b3e32d300ba33b0dadd3b8ff1… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M lib/galaxy/tools/cache.py M test/unit/tools/test_toolbox.py Log Message: ----------- Add debugging statements to ``ToolCache.cleanup()`` Commit: d3652f871a59e1dc9be40aaea693fb4219dbb48c https://github.com/galaxyproject/galaxy/commit/d3652f871a59e1dc9be40aaea693… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M lib/galaxy/tools/cache.py Log Message: ----------- Use lock also for ``ToolCache.reset_status()`` method Commit: 294c7b6eebfb02f947697111c82033b3ba68be04 https://github.com/galaxyproject/galaxy/commit/294c7b6eebfb02f947697111c820… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M test/unit/tools/test_toolbox.py Log Message: ----------- Use ``_try_until_no_errors`` also for ``test_tool_reload_when_macro_is_altered`` unit test Commit: 999c2c038e850a75d5fce0030bdcdbcf3bf0b13d https://github.com/galaxyproject/galaxy/commit/999c2c038e850a75d5fce0030bdc… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M test/unit/tools/test_toolbox.py Log Message: ----------- Store toolbox in test_case._toolbox Apparently accessing double-underscore variables in threads leads to name-mangling issues, so effectively updating test_case.__toolbox wouldn't be reflected outside of the watcher thread. We previously used self.app.toolbox which circumenvented this issue. It is possible that `check_tool_errors` / `check_no_tool_errors` were accessing the old toolbox, unless the watching thread happened to fire between function definition and assert, and that's probably why increasing the number of trials had no effect. Commit: b84607728d7754347de94a1787f00e5a96cebde1 https://github.com/galaxyproject/galaxy/commit/b84607728d7754347de94a1787f0… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M test/unit/tools/test_toolbox.py Log Message: ----------- Tear down started threads Commit: c1f8221b0bd9e8235a24d387990586b9dbbcb21c https://github.com/galaxyproject/galaxy/commit/c1f8221b0bd9e8235a24d3879905… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M test/unit/tools_support.py Log Message: ----------- Use ``with`` statement Commit: f9df69d5f2d58d86a4b0c834bb55e7debcec8707 https://github.com/galaxyproject/galaxy/commit/f9df69d5f2d58d86a4b0c834bb55… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M lib/galaxy/tools/cache.py M test/unit/tools/test_toolbox.py M test/unit/tools_support.py Log Message: ----------- Merge pull request #7446 from mvdbeek/fix_concurrent_add_remove Use a lock on cleanup, expire_tool and cache_tool Compare: https://github.com/galaxyproject/galaxy/compare/b76d5053fad7...f9df69d5f2d5

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[galaxyproject/galaxy] d08ce5: Fix doc for statsd conf for uwsgi
by Dannon 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d08ce52cce71214ed8812169f8051603b75626d3 https://github.com/galaxyproject/galaxy/commit/d08ce52cce71214ed8812169f805… Author: Anthony Bretaudeau <anthony.bretaudeau(a)inria.fr> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M doc/source/admin/special_topics/performance_tracking.rst Log Message: ----------- Fix doc for statsd conf for uwsgi Commit: 3a220d02b9c3e6c1f178de9f579a248ff0993cfe https://github.com/galaxyproject/galaxy/commit/3a220d02b9c3e6c1f178de9f579a… Author: Anthony Bretaudeau <anthony.bretaudeau(a)inria.fr> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M doc/source/admin/special_topics/performance_tracking.rst Log Message: ----------- typo Commit: ba2e0240fe4449dc8c6c19d40b69d3d1f1451c2f https://github.com/galaxyproject/galaxy/commit/ba2e0240fe4449dc8c6c19d40b69… Author: Anthony Bretaudeau <anthony.bretaudeau(a)inria.fr> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M doc/source/admin/special_topics/performance_tracking.rst Log Message: ----------- add details on gxadmin Commit: 0156e61a585e9d8b431b4d5ec30269e247ff929a https://github.com/galaxyproject/galaxy/commit/0156e61a585e9d8b431b4d5ec302… Author: Anthony Bretaudeau <anthony.bretaudeau(a)inria.fr> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M doc/source/admin/special_topics/performance_tracking.rst Log Message: ----------- remove reference to paster Commit: b76d5053fad7ecbc1141cf9d62ba55fcb547d9cf https://github.com/galaxyproject/galaxy/commit/b76d5053fad7ecbc1141cf9d62ba… Author: Dannon <dannon.baker(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M doc/source/admin/special_topics/performance_tracking.rst Log Message: ----------- Merge pull request #7453 from abretaud/patch-3 Fix doc for statsd conf for uwsgi? Compare: https://github.com/galaxyproject/galaxy/compare/4ec49c1197e4...b76d5053fad7

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[galaxyproject/galaxy] 33a74c: Fix hotdata method access; this still needs a lot ...
by Dannon 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 33a74cae2def618e9fe32d1a8b1355d00a39a525 https://github.com/galaxyproject/galaxy/commit/33a74cae2def618e9fe32d1a8b13… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-01-22 (Tue, 22 Jan 2019) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Fix hotdata method access; this still needs a lot of love/refactoring, but this makes it work again? Commit: a64a5cdc5e1ace5981452026c4aa2857fbfd729b https://github.com/galaxyproject/galaxy/commit/a64a5cdc5e1ace5981452026c4aa… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-01-22 (Tue, 22 Jan 2019) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Prefer const, none of these are reassigned. Commit: 3c9f263c69c657f8a644fceb778a7ff36c888d0a https://github.com/galaxyproject/galaxy/commit/3c9f263c69c657f8a644fceb778a… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-01-23 (Wed, 23 Jan 2019) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/rules/rule-definitions.js Log Message: ----------- Restored hotData to computed, but removed unnecessary side-effects Commit: 205cdd0954ffdf34efc2c364ec1b62079e4a27d8 https://github.com/galaxyproject/galaxy/commit/205cdd0954ffdf34efc2c364ec1b… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-01-23 (Wed, 23 Jan 2019) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Removed slice method on non-array property Commit: 569ea9ea36e15afcbd174b50ae2de79029c4bc0a https://github.com/galaxyproject/galaxy/commit/569ea9ea36e15afcbd174b50ae2d… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-01-23 (Wed, 23 Jan 2019) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Removed commented code in RuleCollectionBuilder Commit: f729dab31312d1be5ef2226d533d4ad26fb25130 https://github.com/galaxyproject/galaxy/commit/f729dab31312d1be5ef2226d533d… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-01-31 (Thu, 31 Jan 2019) Changed paths: R client/.babelrc M client/galaxy/scripts/bundleEntries.js A client/galaxy/scripts/components/Tags/GalaxyTags.test.js A client/galaxy/scripts/components/Tags/GalaxyTags.vue A client/galaxy/scripts/components/Tags/StandardTags.test.js A client/galaxy/scripts/components/Tags/StandardTags.vue A client/galaxy/scripts/components/Tags/autocomplete_tagging.scss A client/galaxy/scripts/components/Tags/index.js A client/galaxy/scripts/components/Tags/inits.js A client/galaxy/scripts/components/Tags/model.js A client/galaxy/scripts/components/Tags/model.test.js A client/galaxy/scripts/components/Tags/tagService.js A client/galaxy/scripts/components/Tags/tagService.test.js A client/galaxy/scripts/components/Tags/tagStyles.scss A client/galaxy/scripts/components/Tags/testData/autocompleteResponse.txt M client/galaxy/scripts/entry/analysis/AnalysisRouter.js M client/galaxy/scripts/mvc/grid/grid-view.js R client/galaxy/scripts/sample.test.js A client/galaxy/scripts/store/gridSearchStore.js A client/galaxy/scripts/store/index.js R client/galaxy/scripts/ui/autocom_tagging.js R client/galaxy/scripts/unitTestBundle.js M client/galaxy/scripts/utils/mock.js A client/galaxy/scripts/utils/mountVueComponent.js A client/galaxy/scripts/utils/redirect.js M client/galaxy/scripts/viz/trackster.js R client/galaxy/style/scss/autocomplete_tagging.scss M client/galaxy/style/scss/base.scss A client/galaxy/style/scss/mixins.scss M client/karma/karma.config.mocha.js M client/karma/karma.config.qunit.js M client/karma/webpack.config.unittest.js M client/package.json M client/webpack.config.js M client/yarn.lock M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/webapps/galaxy/controllers/tag.py M lib/galaxy/webapps/reports/framework/grids.py M templates/tagging_common.mako M templates/webapps/galaxy/workflow/editor.mako M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_saved_histories.py Log Message: ----------- Tagging component Commit: f138022a163475e14347e9665facbaa3222efef9 https://github.com/galaxyproject/galaxy/commit/f138022a163475e14347e9665fac… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-02-01 (Fri, 01 Feb 2019) Changed paths: M client/karma/karma.config.mocha.js Log Message: ----------- Re-enable old mocha tests Commit: 2389b4dab241eade87fd60bd7792e3d38189c9aa https://github.com/galaxyproject/galaxy/commit/2389b4dab241eade87fd60bd7792… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-02-01 (Fri, 01 Feb 2019) Changed paths: M templates/tagging_common.mako Log Message: ----------- Removed unused import in tagging_common Commit: 787740561f19c90fa6b7032af6a7820eaee75187 https://github.com/galaxyproject/galaxy/commit/787740561f19c90fa6b7032af6a7… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-02-01 (Fri, 01 Feb 2019) Changed paths: M .ci/jenkins/selenium-py3/run_tests.sh M .ci/jenkins/selenium/run_tests.sh M .gitignore M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/dataset/dataset-edit-attributes.js M client/galaxy/scripts/mvc/dataset/dataset-error.js M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folderrow-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M client/galaxy/scripts/mvc/library/library-libraryrow-view.js M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js M client/galaxy/scripts/toolshed/groups/group-detail-view.js M config/galaxy.yml.sample M config/tool_shed.yml.sample M cron/add_manual_builds.py M doc/source/admin/authentication.md M doc/source/admin/cluster.md M doc/source/admin/config.rst M doc/source/admin/galaxy_options.rst R doc/source/lib/galaxy.openid.rst M doc/source/lib/galaxy.rst M doc/source/lib/galaxy.web.framework.rst M lib/galaxy/actions/library.py M lib/galaxy/config.py M lib/galaxy/datatypes/isa.py M lib/galaxy/dependencies/__init__.py M lib/galaxy/dependencies/conditional-requirements.txt M lib/galaxy/dependencies/pipfiles/default/pinned-dev-requirements.txt M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M lib/galaxy/dependencies/pipfiles/flake8/pinned-requirements.txt M lib/galaxy/jobs/dynamic_tool_destination.py M lib/galaxy/jobs/runners/drmaa.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/managers/datasets.py M lib/galaxy/managers/jobs.py M lib/galaxy/model/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/meta.py M lib/galaxy/tools/verify/__init__.py M lib/galaxy/tools/verify/interactor.py M lib/galaxy/util/__init__.py M lib/galaxy/util/filelock.py M lib/galaxy/util/hash_util.py M lib/galaxy/webapps/galaxy/api/authenticate.py M lib/galaxy/webapps/galaxy/api/libraries.py M lib/galaxy/webapps/galaxy/api/library_datasets.py M lib/galaxy/webapps/galaxy/api/toolshed.py M lib/galaxy/webapps/galaxy/config_schema.yml M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/workflow/modules.py M run_tests.sh M templates/user/logout.mako M templates/webapps/galaxy/workflow/display.mako M test/api/test_histories.py M test/api/test_workflows.py M test/functional/test_toolbox.py M test/unit/test_utils.py M tools/filters/sff_extract.py M tools/maf/maf_to_bed.py M tools/phenotype_association/senatag.py M tools/stats/gsummary.py Log Message: ----------- Merge branch 'dev' into tagging_component_3 Commit: 8a6b0a1cd260d2c91b4a4f8f689de5ae8d24e940 https://github.com/galaxyproject/galaxy/commit/8a6b0a1cd260d2c91b4a4f8f689d… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-02-02 (Sat, 02 Feb 2019) Changed paths: M client/galaxy/scripts/components/Tags/GalaxyTags.test.js M client/galaxy/scripts/components/Tags/GalaxyTags.vue M client/galaxy/scripts/components/Tags/StandardTags.test.js M client/galaxy/scripts/components/Tags/StandardTags.vue M client/galaxy/scripts/utils/mountVueComponent.js Log Message: ----------- Added localize filter and fixed optional hooks for GalaxyTags Commit: c33cd1665d3bfed2dd75086735a01b55f38d44bd https://github.com/galaxyproject/galaxy/commit/c33cd1665d3bfed2dd75086735a0… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: M .travis.yml M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M config/datatypes_conf.xml.sample M config/job_conf.xml.sample_advanced M doc/Makefile M doc/source/admin/apache.md M doc/source/admin/config_logging.rst M doc/source/admin/nginx.md M doc/source/admin/scaling.md M lib/galaxy/datatypes/sniff.py M lib/galaxy/managers/workflows.py M lib/galaxy/tools/imp_exp/__init__.py M lib/galaxy/tools/verify/__init__.py M lib/galaxy/util/compression_utils.py M lib/galaxy/web/proxy/js/package.json M lib/galaxy/workflow/modules.py M lib/tool_shed/galaxy_install/tools/tool_panel_manager.py M lib/tool_shed/util/xml_util.py M scripts/check_python.py M templates/webapps/tool_shed/common/common.mako M test/api/test_workflows.py M test/galaxy_selenium/cli.py M test/galaxy_selenium/driver_factory.py M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/framework.py M test/unit/shed_unit/test_tool_panel_manager.py M test/unit/tools/test_toolbox.py M test/unit/workflows/test_modules.py M test/unit/workflows/workflow_support.py M tool-data/intermine_simple_display.loc.sample M tox.ini Log Message: ----------- Merge branch 'dev' into tagging_component_3 Commit: c89f6ef5764d26191ae4b30a2faef8c1776e65d9 https://github.com/galaxyproject/galaxy/commit/c89f6ef5764d26191ae4b30a2fae… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-02-06 (Wed, 06 Feb 2019) Changed paths: A client/galaxy/scripts/components/Tags/GalaxyTags.usage.txt M client/galaxy/scripts/components/Tags/GalaxyTags.vue R client/galaxy/scripts/components/Tags/autocomplete_tagging.scss M client/galaxy/scripts/components/Tags/tagStyles.scss M client/galaxy/scripts/store/index.js M client/galaxy/scripts/viz/trackster.js A client/galaxy/style/scss/autocomplete_tagging.scss Log Message: ----------- Minor refinements of main galaxy tags component Commit: 410513e4e3fba93cb5634cc8a6d1d99366f129f8 https://github.com/galaxyproject/galaxy/commit/410513e4e3fba93cb5634cc8a6d1… Author: Mason <nerdinacan(a)gmail.com> Date: 2019-02-18 (Mon, 18 Feb 2019) Changed paths: M client/galaxy/scripts/components/Tags/StandardTags.vue M templates/tagging_common.mako Log Message: ----------- Disabled editing for community tags display, fixed tag loading in mako, removed redundant component styles Commit: d6836c5998d0d63156fd9043cf3a714d8718aa27 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lib/galaxy/webapps/reports/framework/grids.py M lib/galaxy/webapps/tool_shed/config_schema.yml M lib/galaxy/webapps/tool_shed/controllers/user.py M lib/galaxy/workflow/scheduling_manager.py M lib/tool_shed/tools/tool_validator.py M lib/tool_shed/util/common_util.py M lib/tool_shed/util/readme_util.py M lib/tool_shed/util/shed_util_common.py M scripts/common_startup.sh M templates/display_common.mako R templates/user/index.mako R templates/user/logout.mako R templates/user/register.mako M templates/webapps/tool_shed/user/login.mako A templates/webapps/tool_shed/user/logout.mako A templates/webapps/tool_shed/user/register.mako A test-data/groupby_out1.dat A test-data/groupby_out2.dat A test-data/groupby_out3.tabular A test-data/groupby_out4.tabular A test-data/matrix.cool M test/api/test_histories.py M test/api/test_history_contents.py M test/api/test_jobs.py M test/api/test_tools.py M test/api/test_users.py M test/base/api.py M test/base/integration_util.py M test/functional/tools/output_filter.xml M test/functional/tools/samples_tool_conf.xml A test/functional/tools/validation_hdf5.xml M test/galaxy_selenium/navigates_galaxy.py M test/galaxy_selenium/navigation.yml M test/integration/test_containerized_jobs.py M test/integration/test_job_recovery.py A test/integration/test_kubernetes_runner.py M test/selenium_tests/test_anon_history.py M test/selenium_tests/test_registration.py M test/shed_functional/base/twilltestcase.py M test/unit/jobs/test_command_factory.py M test/unit/tools/test_collect_primary_datasets.py M test/unit/tools/test_history_imp_exp.py M test/unit/tools/test_toolbox_filters.py M test/unit/unittest_utils/galaxy_mock.py M tools/data_source/upload.py M tools/stats/grouping.py M tools/stats/grouping.xml Log Message: ----------- Merge branch 'dev' into tagging_component_3 Commit: 4af2bdeaef3d493b7c55f46445aeabff720b1b1e https://github.com/galaxyproject/galaxy/commit/4af2bdeaef3d493b7c55f46445ae… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M client/galaxy/scripts/components/Tags/GalaxyTags.test.js M client/galaxy/scripts/components/Tags/GalaxyTags.vue M client/galaxy/scripts/components/Tags/StandardTags.test.js M client/galaxy/scripts/components/Tags/StandardTags.vue M client/galaxy/scripts/components/Tags/model.js M client/galaxy/scripts/components/Tags/model.test.js M client/galaxy/scripts/components/Tags/tagService.js M client/galaxy/scripts/components/Tags/tagService.test.js M client/galaxy/scripts/mvc/grid/grid-view.js M client/galaxy/scripts/store/gridSearchStore.js M client/galaxy/scripts/utils/mountVueComponent.js M client/galaxy/scripts/utils/redirect.js Log Message: ----------- Client format. Commit: 8828fec5ee2aa9506a0475f33049255c48d02883 https://github.com/galaxyproject/galaxy/commit/8828fec5ee2aa9506a0475f33049… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M client/webpack.config.js Log Message: ----------- Drop vue resolver alias, use default package entrypoint. Commit: 4e2de8facb252214902aac70f60aaefca8309e78 https://github.com/galaxyproject/galaxy/commit/4e2de8facb252214902aac70f60a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M client/galaxy/scripts/bundleEntries.js M client/webpack.config.js Log Message: ----------- future-proof store alias used in old code Commit: 4ec49c1197e42fe2ac71a4d973955c26d3072452 https://github.com/galaxyproject/galaxy/commit/4ec49c1197e42fe2ac71a4d97395… Author: Dannon <dannon.baker(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: R client/.babelrc M client/galaxy/scripts/bundleEntries.js A client/galaxy/scripts/components/Tags/GalaxyTags.test.js A client/galaxy/scripts/components/Tags/GalaxyTags.usage.txt A client/galaxy/scripts/components/Tags/GalaxyTags.vue A client/galaxy/scripts/components/Tags/StandardTags.test.js A client/galaxy/scripts/components/Tags/StandardTags.vue A client/galaxy/scripts/components/Tags/index.js A client/galaxy/scripts/components/Tags/inits.js A client/galaxy/scripts/components/Tags/model.js A client/galaxy/scripts/components/Tags/model.test.js A client/galaxy/scripts/components/Tags/tagService.js A client/galaxy/scripts/components/Tags/tagService.test.js A client/galaxy/scripts/components/Tags/testData/autocompleteResponse.txt M client/galaxy/scripts/entry/analysis/AnalysisRouter.js M client/galaxy/scripts/mvc/grid/grid-view.js R client/galaxy/scripts/sample.test.js A client/galaxy/scripts/store/gridSearchStore.js A client/galaxy/scripts/store/index.js R client/galaxy/scripts/ui/autocom_tagging.js R client/galaxy/scripts/unitTestBundle.js M client/galaxy/scripts/utils/mock.js A client/galaxy/scripts/utils/mountVueComponent.js A client/galaxy/scripts/utils/redirect.js M client/galaxy/style/scss/base.scss A client/galaxy/style/scss/mixins.scss M client/karma/karma.config.mocha.js M client/karma/karma.config.qunit.js M client/karma/webpack.config.unittest.js M client/package.json M client/webpack.config.js M client/yarn.lock M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/webapps/galaxy/controllers/tag.py M lib/galaxy/webapps/reports/framework/grids.py M templates/tagging_common.mako M templates/webapps/galaxy/workflow/editor.mako M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_saved_histories.py Log Message: ----------- Merge pull request #7270 from Nerdinacan/tagging_component_3 Tagging component Compare: https://github.com/galaxyproject/galaxy/compare/d3c51d6d29cd...4ec49c1197e4

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[galaxyproject/galaxy] 3f7528: Allow connecting nested collections to multiple=tr...
by John Chilton 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3f752864aeecb0f64b5d64b00933d817cc5ae721 https://github.com/galaxyproject/galaxy/commit/3f752864aeecb0f64b5d64b00933… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js Log Message: ----------- Allow connecting nested collections to multiple=true inputs in workflow editor Commit: 38219a2499af233edea95b3b7430ed359c9a752e https://github.com/galaxyproject/galaxy/commit/38219a2499af233edea95b3b7430… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-terminals.js Log Message: ----------- Only decrement output termninal map over Otherwise collection connections into multiple="true" inputs would be destroyed by the `destroyIfInvalid` check. Commit: ebd6c5cead38b257dab45a8990304d66ba695778 https://github.com/galaxyproject/galaxy/commit/ebd6c5cead38b257dab45a899030… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M client/galaxy/scripts/qunit/tests/workflow_editor_tests.js Log Message: ----------- Don't allow connection to paired input, fix qunit test Commit: 6c22f13e3ad7773337f84e72ab21d295f934ee9e https://github.com/galaxyproject/galaxy/commit/6c22f13e3ad7773337f84e72ab21… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M client/galaxy/scripts/qunit/tests/workflow_editor_tests.js Log Message: ----------- Fix qunit test Commit: d3c51d6d29cd0605c21d96006d40cb5c889b235e https://github.com/galaxyproject/galaxy/commit/d3c51d6d29cd0605c21d96006d40… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view-terminals.js M client/galaxy/scripts/qunit/tests/workflow_editor_tests.js Log Message: ----------- Merge pull request #7435 from mvdbeek/multiple_true_nesting_wf_editor Allow connecting nested collections to multiple=true inputs in workflow editor Compare: https://github.com/galaxyproject/galaxy/compare/050f9b662c8e...d3c51d6d29cd

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[galaxyproject/galaxy] bf8dbd: Slim down testing image
by Martin Cech 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bf8dbdade3b009d7bd0822b657374b992342a466 https://github.com/galaxyproject/galaxy/commit/bf8dbdade3b009d7bd0822b65737… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M test/docker/base/Dockerfile Log Message: ----------- Slim down testing image Commit: d9ac24a9828daa00120da3014634c38a34e1934b https://github.com/galaxyproject/galaxy/commit/d9ac24a9828daa00120da3014634… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M test/docker/base/Dockerfile Log Message: ----------- Don't install slurm, it isn't used in any test Commit: 3bed43fb841a371ab350406dc8b01dd5ce55dad8 https://github.com/galaxyproject/galaxy/commit/3bed43fb841a371ab350406dc8b0… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M test/docker/base/Dockerfile Log Message: ----------- Don't add compiler-stack (will still come in ansible), use prebuilt singularity Commit: a0fd6438d99d55a5337fc5fbdf2a8629b2779c4b https://github.com/galaxyproject/galaxy/commit/a0fd6438d99d55a5337fc5fbdf2a… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M test/docker/base/ansible_vars.yml Log Message: ----------- Directlyy setup virtualenv in /galaxy_venv, saves 700MB Commit: c357d303fe57a685cf57895bac9070828c81bbec https://github.com/galaxyproject/galaxy/commit/c357d303fe57a685cf57895bac90… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M run_tests.sh Log Message: ----------- Test from new image Commit: 087070c72ce212cadedbd3dc5b2b2ae823b980c6 https://github.com/galaxyproject/galaxy/commit/087070c72ce212cadedbd3dc5b2b… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M test/docker/base/Dockerfile Log Message: ----------- Still need python3-dev for uwsgi Commit: 0455eb4f665dca2f9ba4d7129f31aeb2f2dbf579 https://github.com/galaxyproject/galaxy/commit/0455eb4f665dca2f9ba4d7129f31… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M run_tests.sh Log Message: ----------- Use newer image Commit: b0f3d921492870310ec50d240f5af397cca9b8d0 https://github.com/galaxyproject/galaxy/commit/b0f3d921492870310ec50d240f5a… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M test/base/integration_util.py M test/integration/test_containerized_jobs.py Log Message: ----------- Don't use skip_unless_docker decorator This is handled in setupClass. Also drop unused skip_unless_singularity. Commit: d5f3efbf08b07bdc2891c7b1c713f6ba2abe7c6e https://github.com/galaxyproject/galaxy/commit/d5f3efbf08b07bdc2891c7b1c713… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M run_tests.sh Log Message: ----------- Use new image from galaxy namespace Commit: 050f9b662c8e92e1a4c2386cb68145e2fc451aa1 https://github.com/galaxyproject/galaxy/commit/050f9b662c8e92e1a4c2386cb681… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M run_tests.sh M test/base/integration_util.py M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/integration/test_containerized_jobs.py Log Message: ----------- Merge pull request #7439 from mvdbeek/new_testing_image New testing image Compare: https://github.com/galaxyproject/galaxy/compare/cb8c60168363...050f9b662c8e

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[galaxyproject/galaxy] 90c29f: Allow configuring user preferences location
by Nicola Soranzo 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 90c29fcaee81b11e15d3781e5a9a7bd2a75a8186 https://github.com/galaxyproject/galaxy/commit/90c29fcaee81b11e15d3781e5a9a… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Allow configuring user preferences location Commit: 9fad329e3fa2d14314d8e608257e9c0bc1497f6b https://github.com/galaxyproject/galaxy/commit/9fad329e3fa2d14314d8e608257e… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/api/users.py Log Message: ----------- Load at boot time and not runtime Commit: 2362f77a084a9e17c051730a6ed78fded20df1fa https://github.com/galaxyproject/galaxy/commit/2362f77a084a9e17c051730a6ed7… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/config.py Log Message: ----------- Remove default per @martenson suggestion Commit: 43a68a30ca1df4b1358bfad9014c18921958db07 https://github.com/galaxyproject/galaxy/commit/43a68a30ca1df4b1358bfad9014c… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/config.py Log Message: ----------- Update lib/galaxy/config.py Co-Authored-By: erasche <hxr(a)hx42.org> Commit: c2d4645e213446cee21dd37063f4dc2df52ea462 https://github.com/galaxyproject/galaxy/commit/c2d4645e213446cee21dd37063f4… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M lib/galaxy/config.py Log Message: ----------- fix import ordering Commit: c533aa49f8ad9aaa569b2ffeaf8e666fd92c103f https://github.com/galaxyproject/galaxy/commit/c533aa49f8ad9aaa569b2ffeaf8e… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Correct help per @nsoranzo request Commit: fa559f49a85968da3f775f0adbfe9d64aafb3195 https://github.com/galaxyproject/galaxy/commit/fa559f49a85968da3f775f0adbfe… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M lib/galaxy/config.py Log Message: ----------- Merge branch 'user-prefs-location' of github.com:erasche/galaxy into user-prefs-location Commit: cb8c60168363479a8b3d976d828674aa5c0ff4dd https://github.com/galaxyproject/galaxy/commit/cb8c60168363479a8b3d976d8286… Author: Nicola Soranzo <nicola.soranzo(a)gmail.com> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/webapps/galaxy/api/users.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7428 from erasche/user-prefs-location Allow configuration location of user preferences extra configuration Compare: https://github.com/galaxyproject/galaxy/compare/a5ff4eabc09a...cb8c60168363

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[galaxyproject/galaxy] c2c73f: Fix shallow clone on CircleCI for PRs
by Martin Cech 04 Mar '19

04 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c2c73f624d6af5cc8d27d57dbdc14636f7eaa8a2 https://github.com/galaxyproject/galaxy/commit/c2c73f624d6af5cc8d27d57dbdc1… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- Fix shallow clone on CircleCI for PRs Commit: a5ff4eabc09a3ede79aae138de21c0cf4c70e943 https://github.com/galaxyproject/galaxy/commit/a5ff4eabc09a3ede79aae138de21… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- Merge pull request #7451 from nsoranzo/fix_circleci_PRs Fix shallow clone on CircleCI for PRs Compare: https://github.com/galaxyproject/galaxy/compare/d359c70a0ed5...a5ff4eabc09a

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[galaxyproject/ansible-galaxy] d07ef3: forgot another check mode
by Helena Rasche 04 Mar '19

04 Mar '19

Branch: refs/heads/check-mode Home: https://github.com/galaxyproject/ansible-galaxy Commit: d07ef3bae57904cde204551256d34aca0105925c https://github.com/galaxyproject/ansible-galaxy/commit/d07ef3bae57904cde204… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-03-04 (Mon, 04 Mar 2019) Changed paths: M tasks/dependencies.yml Log Message: ----------- forgot another check mode

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[galaxyproject/galaxy] 338aae: Restore get_filename to galaxy.tools.verify:verify()
by John Chilton 03 Mar '19

03 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 338aae53f2ce2c0ddb4df9b259a24737efd07f3f https://github.com/galaxyproject/galaxy/commit/338aae53f2ce2c0ddb4df9b259a2… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M lib/galaxy/tools/verify/__init__.py Log Message: ----------- Restore get_filename to galaxy.tools.verify:verify() Commit: d359c70a0ed533c43a75106ab4a448fa69d85c15 https://github.com/galaxyproject/galaxy/commit/d359c70a0ed533c43a75106ab4a4… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M lib/galaxy/tools/verify/__init__.py Log Message: ----------- Merge pull request #7452 from jmchilton/restore_verify_getfilename Restore get_filename to galaxy.tools.verify:verify() Compare: https://github.com/galaxyproject/galaxy/compare/7017d92d1063...d359c70a0ed5

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[galaxyproject/galaxy] 5142d0: Fix loading workflows with steps without default l...
by Nicola Soranzo 03 Mar '19

03 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5142d0df0732faaf5983d4bb2c025a89e93f5964 https://github.com/galaxyproject/galaxy/commit/5142d0df0732faaf5983d4bb2c02… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Fix loading workflows with steps without default label Prior to https://github.com/galaxyproject/galaxy/pull/7422 we'd call str(default_label), so if `default_label` was None we'd get 'None'. Fixes part of https://github.com/galaxyproject/galaxy/issues/7447 Commit: bc8cf37d09b66efaa994735e994d69998ee34695 https://github.com/galaxyproject/galaxy/commit/bc8cf37d09b66efaa994735e994d… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Remove broken tool_submission_burst Commit: d96034062af9fc358b1c4f3964f0492d4000b3b8 https://github.com/galaxyproject/galaxy/commit/d96034062af9fc358b1c4f3964f0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/tools/execute.py Log Message: ----------- fix lint Commit: 6c80ca50a44d75a675a08c466cbd78726cc64b90 https://github.com/galaxyproject/galaxy/commit/6c80ca50a44d75a675a08c466cbd… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7449 from mvdbeek/remove_broken_tool_submission_burst [18.09] Remove broken tool_submission_burst Commit: 996d7c9a60f037ca1e0120c201e74d2072c29d8d https://github.com/galaxyproject/galaxy/commit/996d7c9a60f037ca1e0120c201e7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Merge pull request #7448 from mvdbeek/fix_when_default_label_is_none [18.09] Fix loading workflows with steps without default label Commit: 91e49acf374fe60b5c8a4dae2fbb448cc626019d https://github.com/galaxyproject/galaxy/commit/91e49acf374fe60b5c8a4dae2fbb… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/managers/workflows.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge branch 'release_18.09' into release_19.01 Commit: 7017d92d1063b70906951541ce248f5eefe05907 https://github.com/galaxyproject/galaxy/commit/7017d92d1063b70906951541ce24… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/managers/workflows.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge branch 'release_19.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/d04b32d0ac58...7017d92d1063

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[galaxyproject/galaxy] 5142d0: Fix loading workflows with steps without default l...
by Nicola Soranzo 03 Mar '19

03 Mar '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: 5142d0df0732faaf5983d4bb2c025a89e93f5964 https://github.com/galaxyproject/galaxy/commit/5142d0df0732faaf5983d4bb2c02… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Fix loading workflows with steps without default label Prior to https://github.com/galaxyproject/galaxy/pull/7422 we'd call str(default_label), so if `default_label` was None we'd get 'None'. Fixes part of https://github.com/galaxyproject/galaxy/issues/7447 Commit: bc8cf37d09b66efaa994735e994d69998ee34695 https://github.com/galaxyproject/galaxy/commit/bc8cf37d09b66efaa994735e994d… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Remove broken tool_submission_burst Commit: d96034062af9fc358b1c4f3964f0492d4000b3b8 https://github.com/galaxyproject/galaxy/commit/d96034062af9fc358b1c4f3964f0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/tools/execute.py Log Message: ----------- fix lint Commit: 6c80ca50a44d75a675a08c466cbd78726cc64b90 https://github.com/galaxyproject/galaxy/commit/6c80ca50a44d75a675a08c466cbd… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7449 from mvdbeek/remove_broken_tool_submission_burst [18.09] Remove broken tool_submission_burst Commit: 996d7c9a60f037ca1e0120c201e74d2072c29d8d https://github.com/galaxyproject/galaxy/commit/996d7c9a60f037ca1e0120c201e7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Merge pull request #7448 from mvdbeek/fix_when_default_label_is_none [18.09] Fix loading workflows with steps without default label Commit: 91e49acf374fe60b5c8a4dae2fbb448cc626019d https://github.com/galaxyproject/galaxy/commit/91e49acf374fe60b5c8a4dae2fbb… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/managers/workflows.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge branch 'release_18.09' into release_19.01 Compare: https://github.com/galaxyproject/galaxy/compare/739bb6310cdd...91e49acf374f

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[galaxyproject/galaxy] 5142d0: Fix loading workflows with steps without default l...
by Martin Cech 03 Mar '19

03 Mar '19

Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: 5142d0df0732faaf5983d4bb2c025a89e93f5964 https://github.com/galaxyproject/galaxy/commit/5142d0df0732faaf5983d4bb2c02… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Fix loading workflows with steps without default label Prior to https://github.com/galaxyproject/galaxy/pull/7422 we'd call str(default_label), so if `default_label` was None we'd get 'None'. Fixes part of https://github.com/galaxyproject/galaxy/issues/7447 Commit: 996d7c9a60f037ca1e0120c201e74d2072c29d8d https://github.com/galaxyproject/galaxy/commit/996d7c9a60f037ca1e0120c201e7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M lib/galaxy/managers/workflows.py Log Message: ----------- Merge pull request #7448 from mvdbeek/fix_when_default_label_is_none [18.09] Fix loading workflows with steps without default label Compare: https://github.com/galaxyproject/galaxy/compare/6c80ca50a44d...996d7c9a60f0

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[galaxyproject/galaxy] bc8cf3: Remove broken tool_submission_burst
by Martin Cech 03 Mar '19

03 Mar '19

Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: bc8cf37d09b66efaa994735e994d69998ee34695 https://github.com/galaxyproject/galaxy/commit/bc8cf37d09b66efaa994735e994d… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Remove broken tool_submission_burst Commit: d96034062af9fc358b1c4f3964f0492d4000b3b8 https://github.com/galaxyproject/galaxy/commit/d96034062af9fc358b1c4f3964f0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/tools/execute.py Log Message: ----------- fix lint Commit: 6c80ca50a44d75a675a08c466cbd78726cc64b90 https://github.com/galaxyproject/galaxy/commit/6c80ca50a44d75a675a08c466cbd… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M config/galaxy.yml.sample M doc/source/admin/galaxy_options.rst M lib/galaxy/config.py M lib/galaxy/tools/execute.py M lib/galaxy/webapps/config_manage.py M lib/galaxy/webapps/galaxy/config_schema.yml Log Message: ----------- Merge pull request #7449 from mvdbeek/remove_broken_tool_submission_burst [18.09] Remove broken tool_submission_burst Compare: https://github.com/galaxyproject/galaxy/compare/a12d9e367cae...6c80ca50a44d

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[galaxyproject/galaxy] f3afac: init circleci config
by Martin Cech 03 Mar '19

03 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f3afacc3cf2bf3633f855807708d7093145de6b4 https://github.com/galaxyproject/galaxy/commit/f3afacc3cf2bf3633f855807708d… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-27 (Wed, 27 Feb 2019) Changed paths: A .circleci/config.yml Log Message: ----------- init circleci config limit builds to just one branch add sudo try shallow cloning indent yml clone to workdir add unit tests use workflow instead of parallel invocations maybe ym likes this? maybe like this really yaml? well that did not work yeye maybe like this? not like this like this for suuuure yep add unit tests run first startup add startup to workflow add more jobs add even more sudo all the things ALL THE THINGS I said add moar add js unit test things try like this sur elike this add cache for yarn usage add jslint to workflow use more aliases add python 35 first startup fix path to yarn lock more aliases Commit: fdfe30651e09f8d02211f986e0e0e6d84877801c https://github.com/galaxyproject/galaxy/commit/fdfe30651e09f8d02211f986e0e0… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M .circleci/config.yml Log Message: ----------- move run command ti proper section Commit: b66bf6a1046ca4b25ea56d73c8d76f7f5c7acda7 https://github.com/galaxyproject/galaxy/commit/b66bf6a1046ca4b25ea56d73c8d7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- rmeov ethe restriction to single branch Commit: aa2142200ba0161ddea5640d3b2c2449da29de25 https://github.com/galaxyproject/galaxy/commit/aa2142200ba0161ddea5640d3b2c… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- just a commit Commit: 137cedd7e1392a6bbab83f5c3fe03ca1f89226b1 https://github.com/galaxyproject/galaxy/commit/137cedd7e1392a6bbab83f5c3fe0… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- Rename some keys Commit: e3a41af9e1d7d57208ac57a8908aa48b0c7f1991 https://github.com/galaxyproject/galaxy/commit/e3a41af9e1d7d57208ac57a8908a… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- Add restore_yarn_cache alias Commit: e6620cd4d9f9c0f356239c67c0d24d9914a8a4b7 https://github.com/galaxyproject/galaxy/commit/e6620cd4d9f9c0f356239c67c0d2… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: M .circleci/config.yml Log Message: ----------- Add comment Commit: d04b32d0ac58b72f7a2db11c7b0689243eaf100c https://github.com/galaxyproject/galaxy/commit/d04b32d0ac58b72f7a2db11c7b06… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-03 (Sun, 03 Mar 2019) Changed paths: A .circleci/config.yml Log Message: ----------- Merge pull request #7424 from martenson/circle-ci experiment - run all travis tests on circleci Compare: https://github.com/galaxyproject/galaxy/compare/cb7566ef02c4...d04b32d0ac58

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[galaxyproject/galaxy] 012cf3: ENH: multifile zip testing
by Martin Cech 02 Mar '19

02 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 012cf387d7ce4b9bf1b2278570ab3076b24f0a35 https://github.com/galaxyproject/galaxy/commit/012cf387d7ce4b9bf1b2278570ab… Author: Matthew Dillon <matthewrdillon(a)gmail.com> Date: 2019-02-21 (Thu, 21 Feb 2019) Changed paths: M CONTRIBUTORS.md M lib/galaxy/tools/verify/asserts/__init__.py A lib/galaxy/tools/verify/asserts/zip.py M lib/galaxy/tools/xsd/galaxy.xsd M test/functional/tools/samples_tool_conf.xml A test/functional/tools/validation_zip.xml Log Message: ----------- ENH: multifile zip testing Commit: 8e82fc71910025ddc77827a9078e25ecfeb0cc30 https://github.com/galaxyproject/galaxy/commit/8e82fc71910025ddc77827a9078e… Author: Matthew Dillon <matthewrdillon(a)gmail.com> Date: 2019-02-26 (Tue, 26 Feb 2019) Changed paths: M lib/galaxy/tools/verify/asserts/zip.py M lib/galaxy/tools/xsd/galaxy.xsd M test/functional/tools/validation_zip.xml Log Message: ----------- SQUASH ME: rename suggestion from @bgruening Commit: 091fe8121a520673fb9feeeb1884488a613b93f7 https://github.com/galaxyproject/galaxy/commit/091fe8121a520673fb9feeeb1884… Author: Matthew Dillon <matthewrdillon(a)gmail.com> Date: 2019-02-26 (Tue, 26 Feb 2019) Changed paths: M lib/galaxy/tools/verify/asserts/__init__.py A lib/galaxy/tools/verify/asserts/archive.py R lib/galaxy/tools/verify/asserts/zip.py M lib/galaxy/tools/xsd/galaxy.xsd A test-data/testdir1.tar A test-data/testdir1.tar.gz M test/functional/tools/samples_tool_conf.xml A test/functional/tools/validation_tar.xml A test/functional/tools/validation_tar_gz.xml Log Message: ----------- SQUASH: Adding in other archive containers Per discussion with @bgruening Commit: 10696c2e8482ede9f0e237c98e833b7b19338a2d https://github.com/galaxyproject/galaxy/commit/10696c2e8482ede9f0e237c98e83… Author: Matthew Dillon <matthewrdillon(a)gmail.com> Date: 2019-02-27 (Wed, 27 Feb 2019) Changed paths: M lib/galaxy/tools/verify/asserts/archive.py Log Message: ----------- LINT: forgot to lint Commit: cb7566ef02c487df67d10843b5acb55870f5b28d https://github.com/galaxyproject/galaxy/commit/cb7566ef02c487df67d10843b5ac… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M CONTRIBUTORS.md M lib/galaxy/tools/verify/asserts/__init__.py A lib/galaxy/tools/verify/asserts/archive.py M lib/galaxy/tools/xsd/galaxy.xsd A test-data/testdir1.tar A test-data/testdir1.tar.gz M test/functional/tools/samples_tool_conf.xml A test/functional/tools/validation_tar.xml A test/functional/tools/validation_tar_gz.xml A test/functional/tools/validation_zip.xml Log Message: ----------- Merge pull request #7400 from thermokarst/zippertest ENH: multifile zip testing Compare: https://github.com/galaxyproject/galaxy/compare/99d4b4090bf5...cb7566ef02c4

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[galaxyproject/galaxy] acde6b: Remove unused code
by Marius van den Beek 02 Mar '19

02 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: acde6b392c10e8d57f03ce917372cd62e2a19166 https://github.com/galaxyproject/galaxy/commit/acde6b392c10e8d57f03ce917372… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/tools/cache.py M lib/galaxy/tools/verify/interactor.py Log Message: ----------- Remove unused code Commit: 99d4b4090bf53e48f0c103ec30212a77ec565107 https://github.com/galaxyproject/galaxy/commit/99d4b4090bf53e48f0c103ec3021… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2019-03-02 (Sat, 02 Mar 2019) Changed paths: M lib/galaxy/tools/cache.py M lib/galaxy/tools/verify/interactor.py Log Message: ----------- Merge pull request #7445 from nsoranzo/remove_unused Remove unused code Compare: https://github.com/galaxyproject/galaxy/compare/ad353c20549d...99d4b4090bf5

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[galaxyproject/galaxy] 84648f: Remove or replace references to Biostars
by Martin Cech 01 Mar '19

01 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 84648f49866c26de996674b02a3243b88c1c1958 https://github.com/galaxyproject/galaxy/commit/84648f49866c26de996674b02a32… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M README.rst M client/galaxy/scripts/mvc/library/library-folderlist-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M scripts/bootstrap_history.py Log Message: ----------- Remove or replace references to Biostars Commit: ad353c20549dd73f4790000879f7129418ad6bef https://github.com/galaxyproject/galaxy/commit/ad353c20549dd73f4790000879f7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M README.rst M client/galaxy/scripts/mvc/library/library-folderlist-view.js M client/galaxy/scripts/mvc/library/library-librarylist-view.js M scripts/bootstrap_history.py Log Message: ----------- Merge pull request #7443 from nsoranzo/remove_biostar_refs Remove or replace references to Biostars Compare: https://github.com/galaxyproject/galaxy/compare/9d5a22f3c584...ad353c20549d

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[galaxyproject/infrastructure-playbook] 80d2b8: More Mailman 3 stuff
by Nate Coraor 01 Mar '19

01 Mar '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 80d2b8a0edc7e4f0c5479b58aac2531d623c61f9 https://github.com/galaxyproject/infrastructure-playbook/commit/80d2b8a0edc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M env/mailman/TODO.txt M env/mailman/group_vars/all.yml M env/mailman/group_vars/listservers/vars.yml M env/mailman/group_vars/listservers/vault.yml M env/mailman/group_vars/mailservers-mx/vars.yml M env/mailman/listservers.yml M env/mailman/playbook.yml M env/mailman/templates/nginx/mailman_ssl.j2 M requirements.yml Log Message: ----------- More Mailman 3 stuff

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[galaxyproject/galaxy] e8f5a1: Fix LocalShellRunner
by Marius van den Beek 01 Mar '19

01 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e8f5a13f3b4d0f57819db18bb6cde086b92eb6c8 https://github.com/galaxyproject/galaxy/commit/e8f5a13f3b4d0f57819db18bb6cd… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/util/cli/shell/local.py Log Message: ----------- Fix LocalShellRunner All the `cmd` coming from the plugins are strings, so if cmd is a string we use `shell=True`, brings this on par with the Remote Shell plugins (which consume strings). Should fix https://github.com/galaxyproject/galaxy/issues/7269. Commit: a12d9e367cae5eb19eec905385d6cb9e5ad0826c https://github.com/galaxyproject/galaxy/commit/a12d9e367cae5eb19eec905385d6… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/util/cli/shell/local.py Log Message: ----------- Merge pull request #7438 from mvdbeek/fix_shell_runner [18.09] Fix LocalShellRunner Commit: 739bb6310cddceb36d875e4a7f7a145aa00ba85a https://github.com/galaxyproject/galaxy/commit/739bb6310cddceb36d875e4a7f7a… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/util/cli/shell/local.py Log Message: ----------- Merge branch 'release_18.09' into release_19.01 Commit: 9d5a22f3c584a36ad783dc548f3c936314c6a44e https://github.com/galaxyproject/galaxy/commit/9d5a22f3c584a36ad783dc548f3c… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/util/cli/shell/local.py Log Message: ----------- Merge branch 'release_19.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/480dddac31f4...9d5a22f3c584

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[galaxyproject/galaxy] e8f5a1: Fix LocalShellRunner
by Marius van den Beek 01 Mar '19

01 Mar '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: e8f5a13f3b4d0f57819db18bb6cde086b92eb6c8 https://github.com/galaxyproject/galaxy/commit/e8f5a13f3b4d0f57819db18bb6cd… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/util/cli/shell/local.py Log Message: ----------- Fix LocalShellRunner All the `cmd` coming from the plugins are strings, so if cmd is a string we use `shell=True`, brings this on par with the Remote Shell plugins (which consume strings). Should fix https://github.com/galaxyproject/galaxy/issues/7269. Commit: a12d9e367cae5eb19eec905385d6cb9e5ad0826c https://github.com/galaxyproject/galaxy/commit/a12d9e367cae5eb19eec905385d6… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/util/cli/shell/local.py Log Message: ----------- Merge pull request #7438 from mvdbeek/fix_shell_runner [18.09] Fix LocalShellRunner Commit: 739bb6310cddceb36d875e4a7f7a145aa00ba85a https://github.com/galaxyproject/galaxy/commit/739bb6310cddceb36d875e4a7f7a… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/util/cli/shell/local.py Log Message: ----------- Merge branch 'release_18.09' into release_19.01 Compare: https://github.com/galaxyproject/galaxy/compare/c40689dbd5fe...739bb6310cdd

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[galaxyproject/galaxy] e8f5a1: Fix LocalShellRunner
by John Chilton 01 Mar '19

01 Mar '19

Branch: refs/heads/release_18.09 Home: https://github.com/galaxyproject/galaxy Commit: e8f5a13f3b4d0f57819db18bb6cde086b92eb6c8 https://github.com/galaxyproject/galaxy/commit/e8f5a13f3b4d0f57819db18bb6cd… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/util/cli/shell/local.py Log Message: ----------- Fix LocalShellRunner All the `cmd` coming from the plugins are strings, so if cmd is a string we use `shell=True`, brings this on par with the Remote Shell plugins (which consume strings). Should fix https://github.com/galaxyproject/galaxy/issues/7269. Commit: a12d9e367cae5eb19eec905385d6cb9e5ad0826c https://github.com/galaxyproject/galaxy/commit/a12d9e367cae5eb19eec905385d6… Author: John Chilton <jmchilton(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M lib/galaxy/jobs/runners/util/cli/shell/local.py Log Message: ----------- Merge pull request #7438 from mvdbeek/fix_shell_runner [18.09] Fix LocalShellRunner Compare: https://github.com/galaxyproject/galaxy/compare/68e3568bb259...a12d9e367cae

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[galaxyproject/galaxy] 47af06: Add tool hover
by Martin Cech 01 Mar '19

01 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 47af069a34d21a034de6250676663884305c371b https://github.com/galaxyproject/galaxy/commit/47af069a34d21a034de625067666… Author: Helena Rasche <hxr(a)hx42.org> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Add tool hover Commit: 480dddac31f4ef7d583ba2ef50d7e13c6e1c12ce https://github.com/galaxyproject/galaxy/commit/480dddac31f4ef7d583ba2ef50d7… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M client/galaxy/style/scss/base.scss Log Message: ----------- Merge pull request #7437 from erasche/tool-hover Add tool hover Compare: https://github.com/galaxyproject/galaxy/compare/4a63ad753e6e...480dddac31f4

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[galaxyproject/usegalaxy-playbook] 692146: Installed bowtie1 wrapper version 1.2.0 on test.
by Dave B. 01 Mar '19

01 Mar '19

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 69214646d6cee31af02d4aac562d03904e5f17c3 https://github.com/galaxyproject/usegalaxy-playbook/commit/69214646d6cee31a… Author: Dave B <dave(a)bx.psu.edu> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M env/test/files/galaxy/var/integrated_tool_panel.xml M env/test/files/galaxy/var/shed_tool_conf.xml M env/test/files/galaxy/var/shed_tool_data_table_conf.xml Log Message: ----------- Installed bowtie1 wrapper version 1.2.0 on test.

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[galaxyproject/galaxy] 203937: send post data in payload per @mvdbeek suggestion
by Nicola Soranzo 01 Mar '19

01 Mar '19

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2039376ddf21abb8e56b4ec984ea9d7fed46efb8 https://github.com/galaxyproject/galaxy/commit/2039376ddf21abb8e56b4ec984ea… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- send post data in payload per @mvdbeek suggestion Commit: c40689dbd5fe27cace5c11a50d806445aefae97a https://github.com/galaxyproject/galaxy/commit/c40689dbd5fe27cace5c11a50d80… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- Merge pull request #7432 from martenson/fix-lib-paths [19.01] send post data in payload Commit: 4a63ad753e6e502ebb89643f675f5d25d260251b https://github.com/galaxyproject/galaxy/commit/4a63ad753e6e502ebb89643f675f… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- Merge branch 'release_19.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/c671b5372789...4a63ad753e6e

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[galaxyproject/galaxy] 203937: send post data in payload per @mvdbeek suggestion
by Marius van den Beek 01 Mar '19

01 Mar '19

Branch: refs/heads/release_19.01 Home: https://github.com/galaxyproject/galaxy Commit: 2039376ddf21abb8e56b4ec984ea9d7fed46efb8 https://github.com/galaxyproject/galaxy/commit/2039376ddf21abb8e56b4ec984ea… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2019-02-28 (Thu, 28 Feb 2019) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- send post data in payload per @mvdbeek suggestion Commit: c40689dbd5fe27cace5c11a50d806445aefae97a https://github.com/galaxyproject/galaxy/commit/c40689dbd5fe27cace5c11a50d80… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2019-03-01 (Fri, 01 Mar 2019) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- Merge pull request #7432 from martenson/fix-lib-paths [19.01] send post data in payload Compare: https://github.com/galaxyproject/galaxy/compare/64a0152a6b82...c40689dbd5fe

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