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[galaxyproject/galaxy] 2495ce: Remove overly chatty debug statement in workflow o...
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2495ceae267da873813d2dc1aae145b686d18672 https://github.com/galaxyproject/galaxy/commit/2495ceae267da873813d2dc1aae1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Remove overly chatty debug statement in workflow output cleanup -- this happens pretty often and much of the time is not a problem at all. If we have to track down any new issues with workflow output cleanup, it's easy enough to temporarily add this logging. Commit: 244fc834cd4dd3980cc3edb755d22ca5a9372421 https://github.com/galaxyproject/galaxy/commit/244fc834cd4dd3980cc3edb755d2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M scripts/common_startup.sh Log Message: ----------- Explicitly include PyPI as an --extra-index-url to pip so we can install from PyPI even when a package exists (but the correct version or architecture does not exist) on wheels.galaxyproject.org. Previously, PyPI was only checked after wheels.galaxyproject.org because pypiserver performs an automatic redirect to PyPI for any packages that do not exist in its index. Commit: 832da6ca66cba8fe155adccd4d327289c9e04430 https://github.com/galaxyproject/galaxy/commit/832da6ca66cba8fe155adccd4d32… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #4674 from natefoo/use-pypi [17.09] Explicitly include PyPI as an --extra-index-url to pip Commit: 74ad0acb52031355c7efe28b00d1d9b0205174f2 https://github.com/galaxyproject/galaxy/commit/74ad0acb52031355c7efe28b00d1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Remove repetition in Galaxy env setup in the job script and fix issues with remote metadata on Pulsar. Commit: 276af4db2ab5e81f4af8f35b7d09f48d9fed8dcd https://github.com/galaxyproject/galaxy/commit/276af4db2ab5e81f4af8f35b7d09… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Job script enhancements based on feedback. Commit: 53095d688be81a36c31b9721caebf58b383cfe72 https://github.com/galaxyproject/galaxy/commit/53095d688be81a36c31b9721caeb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/model/metadata.py Log Message: ----------- Fix remote datatypes_conf.xml and registry.xml param rewriting with Pulsar Commit: db5185cca0bb9b5f59d8fcf218eb4c5d81cb5911 https://github.com/galaxyproject/galaxy/commit/db5185cca0bb9b5f59d8fcf218eb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Pulsar release was 0.8.0 not 0.7.5 Commit: 2669ab022ed2f90faac54c510014f87783efeaa0 https://github.com/galaxyproject/galaxy/commit/2669ab022ed2f90faac54c510014… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Pass job output file unqualified names to Pulsar so that it can create them before running the job. Commit: 3344c77a188cd92ffb2e7150a4f4a2f4f7facedb https://github.com/galaxyproject/galaxy/commit/3344c77a188cd92ffb2e7150a4f4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt Log Message: ----------- Bump pulsar lib version to 0.8.0 for output touch support. Commit: c7699cd3a0e16b9522af334cf2ea1a107fbe5f57 https://github.com/galaxyproject/galaxy/commit/c7699cd3a0e16b9522af334cf2ea… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Fix lint error Commit: 27a28e2c406d274e396cf3cb095576ebae9cd38c https://github.com/galaxyproject/galaxy/commit/27a28e2c406d274e396cf3cb0955… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Merge pull request #4662 from natefoo/pulsar-touch-outputs [17.09] Pass job output file unqualified names to Pulsar so that it can create them before running the job Commit: d1be9e6a8fa1a383b3f75d1ea5f1b0d486b69258 https://github.com/galaxyproject/galaxy/commit/d1be9e6a8fa1a383b3f75d1ea5f1… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh M lib/galaxy/model/metadata.py Log Message: ----------- Merge pull request #4622 from natefoo/pulsar-remote-metadata-fixes [17.09] Pulsar remote metadata fixes Commit: 7896413b2b6a55ea99958504134ab6027baefbe8 https://github.com/galaxyproject/galaxy/commit/7896413b2b6a55ea99958504134a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-23 (Sat, 23 Sep 2017) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Merge pull request #4671 from dannon/remove_debug [17.09] Remove chatty debug statement Commit: 41013563e5e15745fd2bf796340578f6d758fbe8 https://github.com/galaxyproject/galaxy/commit/41013563e5e15745fd2bf7963405… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M CITATION Log Message: ----------- Update CITATION file with 2016 paper Commit: 3ae6318b02e61fcf997b6d2726f12851f51aa802 https://github.com/galaxyproject/galaxy/commit/3ae6318b02e61fcf997b6d2726f1… Author: Eric Rasche <hxr(a)hx42.org> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M CITATION Log Message: ----------- Merge pull request #4686 from mvdbeek/citation_update Update CITATION file with 2016 paper Commit: 0c23d40b22b659abc3636b76a15fb7d392cbb92f https://github.com/galaxyproject/galaxy/commit/0c23d40b22b659abc3636b76a15f… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M CITATION M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/actions/post.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh M lib/galaxy/model/metadata.py M scripts/common_startup.sh Log Message: ----------- Merge branch 'release_17.09' into dev Compare: https://github.com/galaxyproject/galaxy/compare/9e4259192dd7...0c23d40b22b6

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[galaxyproject/galaxy] 410135: Update CITATION file with 2016 paper
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: 41013563e5e15745fd2bf796340578f6d758fbe8 https://github.com/galaxyproject/galaxy/commit/41013563e5e15745fd2bf7963405… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M CITATION Log Message: ----------- Update CITATION file with 2016 paper Commit: 3ae6318b02e61fcf997b6d2726f12851f51aa802 https://github.com/galaxyproject/galaxy/commit/3ae6318b02e61fcf997b6d2726f1… Author: Eric Rasche <hxr(a)hx42.org> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M CITATION Log Message: ----------- Merge pull request #4686 from mvdbeek/citation_update Update CITATION file with 2016 paper Compare: https://github.com/galaxyproject/galaxy/compare/7896413b2b6a...3ae6318b02e6

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[galaxyproject/galaxy]
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/afgane-patch-1 Home: https://github.com/galaxyproject/galaxy

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[galaxyproject/galaxy]
by GitHub 25 Sep '17

25 Sep '17

Branch: refs/heads/revert-4356-revert-4355-patch-wrong-folder-id Home: https://github.com/galaxyproject/galaxy

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[galaxyproject/galaxy] 31e272: Selenium - handle potentially stale elements when ...
by GitHub 23 Sep '17

23 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 31e2721aabf1eaec6f91c71e4f78ee7543da8f7f https://github.com/galaxyproject/galaxy/commit/31e2721aabf1eaec6f91c71e4f78… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Selenium - handle potentially stale elements when fetching tags. https://jenkins.galaxyproject.org/job/selenium/529/artifact/529-test-errors… Commit: 9e6e340adc99884a88dc50a2d6d35cdbd3f74fc6 https://github.com/galaxyproject/galaxy/commit/9e6e340adc99884a88dc50a2d6d3… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/selenium_tests/test_workflow_management.py Log Message: ----------- Selenium - handle potentially stale search box on workflow index page. https://jenkins.galaxyproject.org/job/selenium/530/artifact/530-test-errors… Commit: 3ffdfc67e75a608c05b35086233d40d7c09440cd https://github.com/galaxyproject/galaxy/commit/3ffdfc67e75a608c05b35086233d… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Selenium - catch popups fading out as transitions to retry various actions on. Previously we only detected transitions for retrying actions based on stale element exceptions, this expands that to include popups that may be fading out for instance. I think this is what is happening with the transiently failing test here https://jenkins.galaxyproject.org/job/selenium/528/artifact/528-test-errors…. The exception indicates that a click was not clickable because a modal element that was fading out - though it had been previously clickable. I think this should fix that. Commit: 77b61ba82d3eec55c5acd2ae4ad3ec9fde0cc9db https://github.com/galaxyproject/galaxy/commit/77b61ba82d3eec55c5acd2ae4ad3… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_history_options.py Log Message: ----------- Selenium - attempted fix for transiently failing history options test. Comments inline about this - but the target failure I'm hoping this fixes is: https://jenkins.galaxyproject.org/job/selenium/528/artifact/528-test-errors… Commit: 17348a62fe92716ed80cac6f0925e5d5c3203deb https://github.com/galaxyproject/galaxy/commit/17348a62fe92716ed80cac6f0925… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_workflow_management.py Log Message: ----------- Selenium - more robust inline searching for published histories grid. Refactor recent search improvement for workflow management into a method that can be shared with published histories grid. Should address the transient failure test here: https://jenkins.galaxyproject.org/job/selenium/521/artifact/521-test-errors… Commit: cf037fcc0c0e1f8954361812ec36d14515c8f3ab https://github.com/galaxyproject/galaxy/commit/cf037fcc0c0e1f8954361812ec36… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_workflow_editor.py Log Message: ----------- Selenium - more robust modal checking in test_workflow_editor. During this transient failure: https://jenkins.galaxyproject.org/job/selenium/519/artifact/519-test-errors… the workflow was still loading when an assertion about the resulting modal text was issued. Avoiding the arbitrary sleep and instead just retrying the assertion until it holds true or times out is more robust and should prevent that. Commit: 341667437ae718258a8d543c4e09d187f7f85326 https://github.com/galaxyproject/galaxy/commit/341667437ae718258a8d543c4e09… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_saved_histories.py Log Message: ----------- Fix selenium test retrying of tests in test_saved_histories. The automatic retrying of tests only runs for methods - not for the full test case (if that makes sense) - so setUp() isn't rerun. By refactoring the login action out of the setUp method and into the test function for these cases - when the test is retried the user should be logged back in again as well. Commit: 3014b1068bc4b7dc42d3f4c0754f6eed881b453f https://github.com/galaxyproject/galaxy/commit/3014b1068bc4b7dc42d3f4c0754f… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M test/selenium_tests/test_workflow_management.py Log Message: ----------- remove unused import Commit: 9e4259192dd705e5c1b5a21a55b46ea685caad52 https://github.com/galaxyproject/galaxy/commit/9e4259192dd705e5c1b5a21a55b4… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-23 (Sat, 23 Sep 2017) Changed paths: M test/galaxy_selenium/has_driver.py M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_history_options.py M test/selenium_tests/test_published_histories_grid.py M test/selenium_tests/test_saved_histories.py M test/selenium_tests/test_workflow_editor.py M test/selenium_tests/test_workflow_management.py Log Message: ----------- Merge pull request #4676 from jmchilton/selenium_fixes_33 Another round of small Selenium fixes. Compare: https://github.com/galaxyproject/galaxy/compare/22930eb56853...9e4259192dd7

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[galaxyproject/galaxy] 2495ce: Remove overly chatty debug statement in workflow o...
by GitHub 23 Sep '17

23 Sep '17

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: 2495ceae267da873813d2dc1aae145b686d18672 https://github.com/galaxyproject/galaxy/commit/2495ceae267da873813d2dc1aae1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Remove overly chatty debug statement in workflow output cleanup -- this happens pretty often and much of the time is not a problem at all. If we have to track down any new issues with workflow output cleanup, it's easy enough to temporarily add this logging. Commit: 7896413b2b6a55ea99958504134ab6027baefbe8 https://github.com/galaxyproject/galaxy/commit/7896413b2b6a55ea99958504134a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-23 (Sat, 23 Sep 2017) Changed paths: M lib/galaxy/jobs/actions/post.py Log Message: ----------- Merge pull request #4671 from dannon/remove_debug [17.09] Remove chatty debug statement Compare: https://github.com/galaxyproject/galaxy/compare/d1be9e6a8fa1...7896413b2b6a

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[galaxyproject/galaxy] 8fa1f9: Small tweaks to fixup #2866.
by GitHub 22 Sep '17

22 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8fa1f9a2fea0e15213bfc4c666feaff472076225 https://github.com/galaxyproject/galaxy/commit/8fa1f9a2fea0e15213bfc4c666fe… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M lib/galaxy/webapps/reports/config.py M scripts/common_startup_functions.sh Log Message: ----------- Small tweaks to fixup #2866. Commit: 22930eb56853067bdcb1e4eec6abcb72f483426a https://github.com/galaxyproject/galaxy/commit/22930eb56853067bdcb1e4eec6ab… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M lib/galaxy/webapps/reports/config.py M scripts/common_startup_functions.sh Log Message: ----------- Merge pull request #4679 from jmchilton/yaml_config_fixes [17.09] Small tweaks to configuration and static assets Compare: https://github.com/galaxyproject/galaxy/compare/2c7bdbfe53d8...22930eb56853

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[galaxyproject/galaxy] 74ad0a: Remove repetition in Galaxy env setup in the job s...
by GitHub 22 Sep '17

22 Sep '17

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: 74ad0acb52031355c7efe28b00d1d9b0205174f2 https://github.com/galaxyproject/galaxy/commit/74ad0acb52031355c7efe28b00d1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Remove repetition in Galaxy env setup in the job script and fix issues with remote metadata on Pulsar. Commit: 276af4db2ab5e81f4af8f35b7d09f48d9fed8dcd https://github.com/galaxyproject/galaxy/commit/276af4db2ab5e81f4af8f35b7d09… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Job script enhancements based on feedback. Commit: 53095d688be81a36c31b9721caebf58b383cfe72 https://github.com/galaxyproject/galaxy/commit/53095d688be81a36c31b9721caeb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/model/metadata.py Log Message: ----------- Fix remote datatypes_conf.xml and registry.xml param rewriting with Pulsar Commit: db5185cca0bb9b5f59d8fcf218eb4c5d81cb5911 https://github.com/galaxyproject/galaxy/commit/db5185cca0bb9b5f59d8fcf218eb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Pulsar release was 0.8.0 not 0.7.5 Commit: c7699cd3a0e16b9522af334cf2ea1a107fbe5f57 https://github.com/galaxyproject/galaxy/commit/c7699cd3a0e16b9522af334cf2ea… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Fix lint error Commit: d1be9e6a8fa1a383b3f75d1ea5f1b0d486b69258 https://github.com/galaxyproject/galaxy/commit/d1be9e6a8fa1a383b3f75d1ea5f1… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/pulsar.py M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh M lib/galaxy/model/metadata.py Log Message: ----------- Merge pull request #4622 from natefoo/pulsar-remote-metadata-fixes [17.09] Pulsar remote metadata fixes Compare: https://github.com/galaxyproject/galaxy/compare/27a28e2c406d...d1be9e6a8fa1

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[galaxyproject/galaxy] 2669ab: Pass job output file unqualified names to Pulsar s...
by GitHub 22 Sep '17

22 Sep '17

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: 2669ab022ed2f90faac54c510014f87783efeaa0 https://github.com/galaxyproject/galaxy/commit/2669ab022ed2f90faac54c510014… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Pass job output file unqualified names to Pulsar so that it can create them before running the job. Commit: 3344c77a188cd92ffb2e7150a4f4a2f4f7facedb https://github.com/galaxyproject/galaxy/commit/3344c77a188cd92ffb2e7150a4f4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt Log Message: ----------- Bump pulsar lib version to 0.8.0 for output touch support. Commit: 27a28e2c406d274e396cf3cb095576ebae9cd38c https://github.com/galaxyproject/galaxy/commit/27a28e2c406d274e396cf3cb0955… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-22 (Fri, 22 Sep 2017) Changed paths: M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Merge pull request #4662 from natefoo/pulsar-touch-outputs [17.09] Pass job output file unqualified names to Pulsar so that it can create them before running the job Compare: https://github.com/galaxyproject/galaxy/compare/832da6ca66cb...27a28e2c406d

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[galaxyproject/usegalaxy-playbook] dd9ab8: Make swarmscale a bit heartier
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: dd9ab853788639b2b2916a215a8d955258d55e98 https://github.com/galaxyproject/usegalaxy-playbook/commit/dd9ab853788639b2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M env/common/stack.yml M env/main/group_vars/galaxywebservers.yml M env/test/group_vars/galaxyservers/vars.yml M env/test/group_vars/galaxyswarmscaleservers/vault.yml M roles/usegalaxy_swarmscale/files/delete.yml M roles/usegalaxy_swarmscale/files/inc_spawn.yml M roles/usegalaxy_swarmscale/files/instance A roles/usegalaxy_swarmscale/files/leave.yml M roles/usegalaxy_swarmscale/files/spawn.yml M roles/usegalaxy_swarmscale/tasks/main.yml Log Message: ----------- Make swarmscale a bit heartier

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