- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 244fc8: Explicitly include PyPI as an --extra-index-url to...
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: 244fc834cd4dd3980cc3edb755d22ca5a9372421 https://github.com/galaxyproject/galaxy/commit/244fc834cd4dd3980cc3edb755d2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M scripts/common_startup.sh Log Message: ----------- Explicitly include PyPI as an --extra-index-url to pip so we can install from PyPI even when a package exists (but the correct version or architecture does not exist) on wheels.galaxyproject.org. Previously, PyPI was only checked after wheels.galaxyproject.org because pypiserver performs an automatic redirect to PyPI for any packages that do not exist in its index. Commit: 832da6ca66cba8fe155adccd4d327289c9e04430 https://github.com/galaxyproject/galaxy/commit/832da6ca66cba8fe155adccd4d32… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M scripts/common_startup.sh Log Message: ----------- Merge pull request #4674 from natefoo/use-pypi [17.09] Explicitly include PyPI as an --extra-index-url to pip Compare: https://github.com/galaxyproject/galaxy/compare/4dbadc26e4bb...832da6ca66cb

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[galaxyproject/galaxy] 4ee180: Fix Selenium tests outright broken in #4669.
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4ee18019e0750a363ba34ae5acece4faa8aec850 https://github.com/galaxyproject/galaxy/commit/4ee18019e0750a363ba34ae5acec… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- Fix Selenium tests outright broken in #4669. Way to go @jmchilton. Commit: 2c7bdbfe53d8cdf3bbbbc1b3061a873c99c1b42e https://github.com/galaxyproject/galaxy/commit/2c7bdbfe53d8cdf3bbbbc1b3061a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- Merge pull request #4673 from jmchilton/selenium_fixes_32 Fix Selenium tests outright broken in #4669. Compare: https://github.com/galaxyproject/galaxy/compare/41b13f6d8551...2c7bdbfe53d8

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[galaxyproject/galaxy] a3ff12: Explicitly write registry.xml when creating a job ...
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a3ff1297435721d3f687052382b75a2a2f2f9b25 https://github.com/galaxyproject/galaxy/commit/a3ff1297435721d3f687052382b7… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Explicitly write registry.xml when creating a job for the upload tool Commit: d980dfa162b340423ffd8822ac9dcdf6f1997e80 https://github.com/galaxyproject/galaxy/commit/d980dfa162b340423ffd8822ac9d… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Write registry.xml for all tools that require galaxy's python env This should cover the upload and data_source tools. Commit: b7b3ffb1813f31b7811bdbb35602743294356f66 https://github.com/galaxyproject/galaxy/commit/b7b3ffb1813f31b7811bdbb35602… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M test/unit/jobs/test_job_wrapper.py Log Message: ----------- Fix unit test failure Commit: 7fd6813dd7fcf373cc09a3da6fd6f4bf5c8b0863 https://github.com/galaxyproject/galaxy/commit/7fd6813dd7fcf373cc09a3da6fd6… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M tox.ini Log Message: ----------- pin flake8 deps for release Commit: a25b6e5b0eb5ed97e789e1b4b8643be775a55e05 https://github.com/galaxyproject/galaxy/commit/a25b6e5b0eb5ed97e789e1b4b864… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M lib/galaxy/version.py Log Message: ----------- Merge pull request #4648 from martenson/version-17.09 [17.09]Update version to 17.09.rc1 Commit: f46a5c1797fb4c1f3fc663addf83ce9a411beac6 https://github.com/galaxyproject/galaxy/commit/f46a5c1797fb4c1f3fc663addf83… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M tox.ini Log Message: ----------- Merge pull request #4650 from martenson/release_17.09 [17.09] pin flake8 deps for release Commit: ee6b8b1af8c997d874a9ad7213231582b69cf82c https://github.com/galaxyproject/galaxy/commit/ee6b8b1af8c997d874a9ad721323… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M tox.ini Log Message: ----------- pin the last flake8 thanks @nsoranzo :eagle: :eyes: Commit: 0e89935460a54fa846dff53041fcfe3b8e7e9ecd https://github.com/galaxyproject/galaxy/commit/0e89935460a54fa846dff53041fc… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M tox.ini Log Message: ----------- Merge pull request #4652 from martenson/release_17.09 [17.09] pin the last missing flake8 Commit: 5404f7cda7ca4f3b9a2c423bdd29898fb7d8c911 https://github.com/galaxyproject/galaxy/commit/5404f7cda7ca4f3b9a2c423bdd29… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M templates/display_base.mako M templates/display_common.mako Log Message: ----------- Small (temporary, mako is going away) layer to support modern routes in old display_base pages (workflow, history, etc). Commit: 69a87003f70e3925554fcc88fd2080edab619ed1 https://github.com/galaxyproject/galaxy/commit/69a87003f70e3925554fcc88fd20… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Fix modules resolver (addition of the resolver_msg property on the base class references name and version attributes that were not defined in the ModuleDependecy). Commit: c9aead91d75a1e0e636cf08ba725a8c2f8ff300a https://github.com/galaxyproject/galaxy/commit/c9aead91d75a1e0e636cf08ba725… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M templates/display_base.mako M templates/display_common.mako Log Message: ----------- Merge pull request #4656 from dannon/display_link_fixes [17.09] Fix links on workflow, history items. Commit: 5d7b524b5785fcb483dbc7381c871595a070b1b0 https://github.com/galaxyproject/galaxy/commit/5d7b524b5785fcb483dbc7381c87… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M test/unit/jobs/test_job_wrapper.py Log Message: ----------- Merge pull request #4644 from mvdbeek/upload_tool_registry_xml_failure [17.05] BUG: Explicitly write registry.xml when creating a job for the upload tool Commit: 2ffeedfa723cae9252bda2098918df82daf9cf41 https://github.com/galaxyproject/galaxy/commit/2ffeedfa723cae9252bda2098918… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge pull request #4663 from natefoo/fix-modules-resolver [16.07] Fix modules resolver Commit: e178879c0f9f4351bf0270f1602a60d660a4da04 https://github.com/galaxyproject/galaxy/commit/e178879c0f9f4351bf0270f1602a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_16.07' into release_16.10 Commit: 706a5b2cd2bdac4c30a5b4d86aaf73a9e4ffa291 https://github.com/galaxyproject/galaxy/commit/706a5b2cd2bdac4c30a5b4d86aaf… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_16.10' into release_17.01 Commit: cfabe37d69549e919d3fce15cbcca108fdcf1597 https://github.com/galaxyproject/galaxy/commit/cfabe37d69549e919d3fce15cbcc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_17.01' into release_17.05 Commit: 4dbadc26e4bb4e40ca04ef746247abc504e98ca2 https://github.com/galaxyproject/galaxy/commit/4dbadc26e4bb4e40ca04ef746247… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/tools/deps/resolvers/modules.py M test/unit/jobs/test_job_wrapper.py Log Message: ----------- Merge branch 'release_17.05' into release_17.09 Commit: 41b13f6d855180746576a40e0e209333746a4a8a https://github.com/galaxyproject/galaxy/commit/41b13f6d855180746576a40e0e20… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/tools/deps/resolvers/modules.py M templates/display_base.mako M templates/display_common.mako M test/unit/jobs/test_job_wrapper.py M tox.ini Log Message: ----------- Merge branch 'release_17.09' into dev Compare: https://github.com/galaxyproject/galaxy/compare/00677fc0f62c...41b13f6d8551

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[galaxyproject/galaxy] a3ff12: Explicitly write registry.xml when creating a job ...
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/release_17.09 Home: https://github.com/galaxyproject/galaxy Commit: a3ff1297435721d3f687052382b75a2a2f2f9b25 https://github.com/galaxyproject/galaxy/commit/a3ff1297435721d3f687052382b7… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Explicitly write registry.xml when creating a job for the upload tool Commit: d980dfa162b340423ffd8822ac9dcdf6f1997e80 https://github.com/galaxyproject/galaxy/commit/d980dfa162b340423ffd8822ac9d… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Write registry.xml for all tools that require galaxy's python env This should cover the upload and data_source tools. Commit: b7b3ffb1813f31b7811bdbb35602743294356f66 https://github.com/galaxyproject/galaxy/commit/b7b3ffb1813f31b7811bdbb35602… Author: mvdbeek <m.vandenbeek(a)gmail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M test/unit/jobs/test_job_wrapper.py Log Message: ----------- Fix unit test failure Commit: 69a87003f70e3925554fcc88fd2080edab619ed1 https://github.com/galaxyproject/galaxy/commit/69a87003f70e3925554fcc88fd20… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Fix modules resolver (addition of the resolver_msg property on the base class references name and version attributes that were not defined in the ModuleDependecy). Commit: 5d7b524b5785fcb483dbc7381c871595a070b1b0 https://github.com/galaxyproject/galaxy/commit/5d7b524b5785fcb483dbc7381c87… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M test/unit/jobs/test_job_wrapper.py Log Message: ----------- Merge pull request #4644 from mvdbeek/upload_tool_registry_xml_failure [17.05] BUG: Explicitly write registry.xml when creating a job for the upload tool Commit: 2ffeedfa723cae9252bda2098918df82daf9cf41 https://github.com/galaxyproject/galaxy/commit/2ffeedfa723cae9252bda2098918… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge pull request #4663 from natefoo/fix-modules-resolver [16.07] Fix modules resolver Commit: e178879c0f9f4351bf0270f1602a60d660a4da04 https://github.com/galaxyproject/galaxy/commit/e178879c0f9f4351bf0270f1602a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_16.07' into release_16.10 Commit: 706a5b2cd2bdac4c30a5b4d86aaf73a9e4ffa291 https://github.com/galaxyproject/galaxy/commit/706a5b2cd2bdac4c30a5b4d86aaf… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_16.10' into release_17.01 Commit: cfabe37d69549e919d3fce15cbcca108fdcf1597 https://github.com/galaxyproject/galaxy/commit/cfabe37d69549e919d3fce15cbcc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_17.01' into release_17.05 Commit: 4dbadc26e4bb4e40ca04ef746247abc504e98ca2 https://github.com/galaxyproject/galaxy/commit/4dbadc26e4bb4e40ca04ef746247… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/tools/deps/resolvers/modules.py M test/unit/jobs/test_job_wrapper.py Log Message: ----------- Merge branch 'release_17.05' into release_17.09 Compare: https://github.com/galaxyproject/galaxy/compare/c9aead91d75a...4dbadc26e4bb

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[galaxyproject/galaxy] 69a870: Fix modules resolver (addition of the resolver_msg...
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/release_17.05 Home: https://github.com/galaxyproject/galaxy Commit: 69a87003f70e3925554fcc88fd2080edab619ed1 https://github.com/galaxyproject/galaxy/commit/69a87003f70e3925554fcc88fd20… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Fix modules resolver (addition of the resolver_msg property on the base class references name and version attributes that were not defined in the ModuleDependecy). Commit: 2ffeedfa723cae9252bda2098918df82daf9cf41 https://github.com/galaxyproject/galaxy/commit/2ffeedfa723cae9252bda2098918… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge pull request #4663 from natefoo/fix-modules-resolver [16.07] Fix modules resolver Commit: e178879c0f9f4351bf0270f1602a60d660a4da04 https://github.com/galaxyproject/galaxy/commit/e178879c0f9f4351bf0270f1602a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_16.07' into release_16.10 Commit: 706a5b2cd2bdac4c30a5b4d86aaf73a9e4ffa291 https://github.com/galaxyproject/galaxy/commit/706a5b2cd2bdac4c30a5b4d86aaf… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_16.10' into release_17.01 Commit: cfabe37d69549e919d3fce15cbcca108fdcf1597 https://github.com/galaxyproject/galaxy/commit/cfabe37d69549e919d3fce15cbcc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_17.01' into release_17.05 Compare: https://github.com/galaxyproject/galaxy/compare/5d7b524b5785...cfabe37d6954

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[galaxyproject/galaxy] 69a870: Fix modules resolver (addition of the resolver_msg...
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/release_17.01 Home: https://github.com/galaxyproject/galaxy Commit: 69a87003f70e3925554fcc88fd2080edab619ed1 https://github.com/galaxyproject/galaxy/commit/69a87003f70e3925554fcc88fd20… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Fix modules resolver (addition of the resolver_msg property on the base class references name and version attributes that were not defined in the ModuleDependecy). Commit: 2ffeedfa723cae9252bda2098918df82daf9cf41 https://github.com/galaxyproject/galaxy/commit/2ffeedfa723cae9252bda2098918… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge pull request #4663 from natefoo/fix-modules-resolver [16.07] Fix modules resolver Commit: e178879c0f9f4351bf0270f1602a60d660a4da04 https://github.com/galaxyproject/galaxy/commit/e178879c0f9f4351bf0270f1602a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_16.07' into release_16.10 Commit: 706a5b2cd2bdac4c30a5b4d86aaf73a9e4ffa291 https://github.com/galaxyproject/galaxy/commit/706a5b2cd2bdac4c30a5b4d86aaf… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_16.10' into release_17.01 Compare: https://github.com/galaxyproject/galaxy/compare/a9facdc7568f...706a5b2cd2bd

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[galaxyproject/galaxy] 69a870: Fix modules resolver (addition of the resolver_msg...
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/release_16.10 Home: https://github.com/galaxyproject/galaxy Commit: 69a87003f70e3925554fcc88fd2080edab619ed1 https://github.com/galaxyproject/galaxy/commit/69a87003f70e3925554fcc88fd20… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Fix modules resolver (addition of the resolver_msg property on the base class references name and version attributes that were not defined in the ModuleDependecy). Commit: 2ffeedfa723cae9252bda2098918df82daf9cf41 https://github.com/galaxyproject/galaxy/commit/2ffeedfa723cae9252bda2098918… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge pull request #4663 from natefoo/fix-modules-resolver [16.07] Fix modules resolver Commit: e178879c0f9f4351bf0270f1602a60d660a4da04 https://github.com/galaxyproject/galaxy/commit/e178879c0f9f4351bf0270f1602a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M lib/galaxy/tools/deps/resolvers/modules.py Log Message: ----------- Merge branch 'release_16.07' into release_16.10 Compare: https://github.com/galaxyproject/galaxy/compare/14ceb6d91b57...e178879c0f9f

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[galaxyproject/galaxy] aa68d3: Improve robustness of published workflow display t...
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: aa68d38735acda43a078a3412afef3c604d2e205 https://github.com/galaxyproject/galaxy/commit/aa68d38735acda43a078a3412afe… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_workflow_management.py Log Message: ----------- Improve robustness of published workflow display test case. Failed twice in different ways here https://jenkins.galaxyproject.org/job/selenium/484/ - this should address both cases. Commit: 00677fc0f62cc37732528f2af5ac964ce4239fad https://github.com/galaxyproject/galaxy/commit/00677fc0f62cc37732528f2af5ac… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/test_workflow_management.py Log Message: ----------- Merge pull request #4653 from jmchilton/selenium_fixes_28 Improve robustness of published workflow display test case. Compare: https://github.com/galaxyproject/galaxy/compare/35cd9339453d...00677fc0f62c

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[galaxyproject/galaxy] 01eb5f: Aggressively retry buggy submit_login() function i...
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 01eb5f04e6661d389d8c8f681373b5c50fe259b9 https://github.com/galaxyproject/galaxy/commit/01eb5f04e6661d389d8c8f681373… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/framework.py M test/selenium_tests/test_custom_builds.py M test/selenium_tests/test_history_sharing.py M test/selenium_tests/test_saved_histories.py Log Message: ----------- Aggressively retry buggy submit_login() function in Selenium tests. I don't get why when we click submit the user does not actually get logged in, but based on the last round of improved error messages this seems to be the case. You might think there is some callback in the login form that doesn't get registered by the time Selenium clicks the submit button - but this doesn't seem to be the case - I don't see any jquery magic happening in login.mako. Should fix failures like this: https://jenkins.galaxyproject.org/job/selenium/482/testReport/junit/seleniu… I'd say at this point this is the most common problem in the Selenium tests. This also introduces a framework for taking state snapshots of the Galaxy interface during tests that will only get written out if the tests fail. We now take screenshots before and after submitting the login form but this is a general purpose debugging mechanism that could be used other places. Commit: 35cd9339453dd245ab4c317517ea1dfafb6af147 https://github.com/galaxyproject/galaxy/commit/35cd9339453dd245ab4c317517ea… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M test/galaxy_selenium/navigates_galaxy.py M test/selenium_tests/framework.py M test/selenium_tests/test_custom_builds.py M test/selenium_tests/test_history_sharing.py M test/selenium_tests/test_saved_histories.py Log Message: ----------- Merge pull request #4655 from jmchilton/selenium_fixes_29 Aggressively retry buggy submit_login() function in Selenium tests. Compare: https://github.com/galaxyproject/galaxy/compare/24557fdeaab2...35cd9339453d

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[galaxyproject/galaxy] a45e7e: Fix transiently failing saved histories due to suc...
by GitHub 21 Sep '17

21 Sep '17

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: a45e7e196b03b6467ddea0bcacac9914830f0bb9 https://github.com/galaxyproject/galaxy/commit/a45e7e196b03b6467ddea0bcacac… Author: John Chilton <jmchilton(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- Fix transiently failing saved histories due to success message disappearing. Commit: 24557fdeaab24ca8a763478ca5d5a2303f00243f https://github.com/galaxyproject/galaxy/commit/24557fdeaab24ca8a763478ca5d5… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M test/selenium_tests/test_saved_histories.py Log Message: ----------- Merge pull request #4669 from jmchilton/selenium_fixes_31 Fix transiently failing saved histories due to success message disappearing. Compare: https://github.com/galaxyproject/galaxy/compare/98f2c108238e...24557fdeaab2

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