- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] ef7adc: lexists vs. exists
by GitHub 12 Dec '16

12 Dec '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ef7adcec5300819d411b1fb148baf999f2d54422 https://github.com/galaxyproject/galaxy/commit/ef7adcec5300819d411b1fb148ba… Author: Björn Grüning <bjoern(a)gruenings.eu> Date: 2016-12-11 (Sun, 11 Dec 2016) Changed paths: M lib/galaxy/tools/deps/installable.py Log Message: ----------- lexists vs. exists Commit: 8b9337ffd3f3911ed229dcdce1086f682302a4ae https://github.com/galaxyproject/galaxy/commit/8b9337ffd3f3911ed229dcdce108… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-12-12 (Mon, 12 Dec 2016) Changed paths: M lib/galaxy/tools/deps/installable.py Log Message: ----------- Merge pull request #3301 from bgruening/lexists lexists vs. exists Compare: https://github.com/galaxyproject/galaxy/compare/176d4d5cf49a...8b9337ffd3f3

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[galaxyproject/galaxy] 96bd45: Further tighten up GG format.
by GitHub 12 Dec '16

12 Dec '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 96bd4552e1b1a7b18d57f8e0d0f1a5da22b085a1 https://github.com/galaxyproject/galaxy/commit/96bd4552e1b1a7b18d57f8e0d0f1… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-12-11 (Sun, 11 Dec 2016) Changed paths: M lib/galaxy/datatypes/genetics.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- Further tighten up GG format. I encountered similar input problems to #864 - this helps a little. - Ensure first column is a valid marker as outlined on https://genome.ucsc.edu/goldenpath/help/hgGenomeHelp.html. - Avoid readlines() since it may allocate huge amounts on memory on certain inputs. - Eliminate bare exception. Rebased with bug fixes in original commit and better testing and tighter exception handling as suggested by @nsoranzo. Commit: 176d4d5cf49a5859357ba88f38ef6a2136fb8570 https://github.com/galaxyproject/galaxy/commit/176d4d5cf49a5859357ba88f38ef… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-12-12 (Mon, 12 Dec 2016) Changed paths: M lib/galaxy/datatypes/genetics.py M lib/galaxy/datatypes/sniff.py Log Message: ----------- Merge pull request #3233 from jmchilton/gg_datatype Further tighten up GG format. Compare: https://github.com/galaxyproject/galaxy/compare/e6374bfc211f...176d4d5cf49a

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[galaxyproject/galaxy] 6435db: change nitesh's handle to reflect reality
by GitHub 12 Dec '16

12 Dec '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 6435db510594a48394896a8e5d8d2a7d129b629d https://github.com/galaxyproject/galaxy/commit/6435db510594a48394896a8e5d8d… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-12-01 (Thu, 01 Dec 2016) Changed paths: M doc/source/project/organization.rst Log Message: ----------- change nitesh's handle to reflect reality Commit: e6374bfc211f4192113eea28bbe588a33a197e9a https://github.com/galaxyproject/galaxy/commit/e6374bfc211f4192113eea28bbe5… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-12-11 (Sun, 11 Dec 2016) Changed paths: M doc/source/project/organization.rst Log Message: ----------- Merge pull request #3253 from martenson/procedure-nitesh [PROCEDURES] change Nitesh's handle to reflect reality Compare: https://github.com/galaxyproject/galaxy/compare/06de9d0ae060...e6374bfc211f

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[galaxyproject/galaxy] 4431d7: Extend list of tabular datatypes for bar diagrams
by GitHub 12 Dec '16

12 Dec '16

Branch: refs/heads/release_16.10 Home: https://github.com/galaxyproject/galaxy Commit: 4431d735c8908b19bbcd1ca594ec1a194cf4d299 https://github.com/galaxyproject/galaxy/commit/4431d735c8908b19bbcd1ca594ec… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-12-08 (Thu, 08 Dec 2016) Changed paths: M config/plugins/visualizations/charts/static/repository/build/registry.js M config/plugins/visualizations/charts/static/repository/build/registry.js.map M config/plugins/visualizations/charts/static/repository/visualizations/utilities/tabular-form.js Log Message: ----------- Extend list of tabular datatypes for bar diagrams Commit: 2c833499b130aca72ab78d112692f2a9f0d4d9e6 https://github.com/galaxyproject/galaxy/commit/2c833499b130aca72ab78d112692… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-12-11 (Sun, 11 Dec 2016) Changed paths: M config/plugins/visualizations/charts/static/repository/build/registry.js M config/plugins/visualizations/charts/static/repository/build/registry.js.map M config/plugins/visualizations/charts/static/repository/visualizations/utilities/tabular-form.js Log Message: ----------- Merge pull request #3287 from guerler/fix_chart_datatypes [16.10] Rely on tabular subclass matching through vizframework layer Compare: https://github.com/galaxyproject/galaxy/compare/22c7fcf3fff1...2c833499b130

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[galaxyproject/galaxy] 226874: Ensure Conda prefix and cached environment are abs...
by GitHub 12 Dec '16

12 Dec '16

Branch: refs/heads/release_16.10 Home: https://github.com/galaxyproject/galaxy Commit: 22687410c4829dd9a0e44f55ee93b1020c8eab20 https://github.com/galaxyproject/galaxy/commit/22687410c4829dd9a0e44f55ee93… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2016-12-09 (Fri, 09 Dec 2016) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py Log Message: ----------- Ensure Conda prefix and cached environment are absolute paths Otherwise when Conda commands are executed from the job working directory, they will break. Commit: 879e3d69606e1a4b98bd34f75bf905b9da6edcfa https://github.com/galaxyproject/galaxy/commit/879e3d69606e1a4b98bd34f75bf9… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2016-12-09 (Fri, 09 Dec 2016) Changed paths: M lib/galaxy/tools/deps/__init__.py Log Message: ----------- Skip building cache if force_rebuild is False Also: - re-raise exception if rmtree() fails - change hash(ed)_requirements to hash(ed)_dependencies Commit: 5a7f9e876e28ea773b79af9bbb887de7cff4aaa7 https://github.com/galaxyproject/galaxy/commit/5a7f9e876e28ea773b79af9bbb88… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2016-12-11 (Sun, 11 Dec 2016) Changed paths: M lib/tool_shed/galaxy_install/install_manager.py Log Message: ----------- Correctly update TS repo status Execute build_dependency_cache() only if using a cached dependency manager. Set tool versions only if the TS repo contains tools. Raise exception if fetch_tool_versions() fails, previously the error message never reached the UI. Commit: 22c7fcf3fff19ed9f271ada3cd8c007a96444768 https://github.com/galaxyproject/galaxy/commit/22c7fcf3fff19ed9f271ada3cd8c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-12-11 (Sun, 11 Dec 2016) Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/tool_shed/galaxy_install/install_manager.py Log Message: ----------- Merge pull request #3295 from nsoranzo/release_16.10_tool_install_fixes [16.10] Tool install fixes Compare: https://github.com/galaxyproject/galaxy/compare/9dda310cd35e...22c7fcf3fff1

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[galaxyproject/galaxy] 7c9d9d: Apply a fix similar to 36134bca694c9dc6b2584fb661d...
by GitHub 12 Dec '16

12 Dec '16

Branch: refs/heads/release_16.10 Home: https://github.com/galaxyproject/galaxy Commit: 7c9d9d2231ecc113f7d69737a4aa4ec140b7e48c https://github.com/galaxyproject/galaxy/commit/7c9d9d2231ecc113f7d69737a4aa… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-12-09 (Fri, 09 Dec 2016) Changed paths: M templates/webapps/galaxy/workflow/editor.mako Log Message: ----------- Apply a fix similar to 36134bca694c9dc6b2584fb661dfbce4ddb793e6 for the workflow editor. Not ideal, but this is old code we're replacing as the editor is overhauled. Commit: 9dda310cd35e18c3ef86c5b09a021fc359fe5011 https://github.com/galaxyproject/galaxy/commit/9dda310cd35e18c3ef86c5b09a02… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-12-11 (Sun, 11 Dec 2016) Changed paths: M templates/webapps/galaxy/workflow/editor.mako Log Message: ----------- Merge pull request #3296 from dannon/workflow_editor_toolsearch_messagebox_fix [16.10] Workflow editor 'messagebox' fix. Compare: https://github.com/galaxyproject/galaxy/compare/d6d2a12ec071...9dda310cd35e

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[galaxyproject/galaxy] c315f1: Upload file escaping backport.
by GitHub 09 Dec '16

09 Dec '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: c315f1d74bc8b4c4c2e5d6f0d4acd02d64b89e43 https://github.com/galaxyproject/galaxy/commit/c315f1d74bc8b4c4c2e5d6f0d4ac… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-12-08 (Thu, 08 Dec 2016) Changed paths: M client/galaxy/scripts/mvc/upload/composite/composite-row.js M client/galaxy/scripts/mvc/upload/default/default-row.js M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/default/default-row.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/default/default-row.js Log Message: ----------- Upload file escaping backport. Commit: 602f2f2f1d431306c9aa64a6818c8feddaabb261 https://github.com/galaxyproject/galaxy/commit/602f2f2f1d431306c9aa64a6818c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-12-09 (Fri, 09 Dec 2016) Changed paths: M client/galaxy/scripts/mvc/upload/composite/composite-row.js M client/galaxy/scripts/mvc/upload/default/default-row.js M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/default/default-row.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/default/default-row.js Log Message: ----------- Merge pull request #3292 from dannon/backport_upload_fn_escape [16.07] Upload file escaping backport. Commit: d6d2a12ec071e6cfa297944917ed201895f56332 https://github.com/galaxyproject/galaxy/commit/d6d2a12ec071e6cfa297944917ed… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2016-12-09 (Fri, 09 Dec 2016) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Merge branch 'release_16.07' into release_16.10 Conflicts: client/galaxy/scripts/mvc/upload/composite/composite-row.js client/galaxy/scripts/mvc/upload/default/default-row.js static/maps/mvc/upload/composite/composite-row.js.map static/maps/mvc/upload/default/default-row.js.map static/scripts/bundled/analysis.bundled.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js static/scripts/bundled/libs.bundled.js.map static/scripts/bundled/login.bundled.js.map static/scripts/mvc/upload/composite/composite-row.js static/scripts/mvc/upload/default/default-row.js Commit: 06de9d0ae060318244c0c9b653e31058ddd826a7 https://github.com/galaxyproject/galaxy/commit/06de9d0ae060318244c0c9b653e3… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2016-12-09 (Fri, 09 Dec 2016) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Merge branch 'release_16.10' into dev Conflicts: static/scripts/bundled/libs.bundled.js static/scripts/bundled/libs.bundled.js.map Compare: https://github.com/galaxyproject/galaxy/compare/95305a3ee2bf...06de9d0ae060

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[galaxyproject/galaxy] c315f1: Upload file escaping backport.
by GitHub 09 Dec '16

09 Dec '16

Branch: refs/heads/release_16.10 Home: https://github.com/galaxyproject/galaxy Commit: c315f1d74bc8b4c4c2e5d6f0d4acd02d64b89e43 https://github.com/galaxyproject/galaxy/commit/c315f1d74bc8b4c4c2e5d6f0d4ac… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-12-08 (Thu, 08 Dec 2016) Changed paths: M client/galaxy/scripts/mvc/upload/composite/composite-row.js M client/galaxy/scripts/mvc/upload/default/default-row.js M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/default/default-row.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/default/default-row.js Log Message: ----------- Upload file escaping backport. Commit: 602f2f2f1d431306c9aa64a6818c8feddaabb261 https://github.com/galaxyproject/galaxy/commit/602f2f2f1d431306c9aa64a6818c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-12-09 (Fri, 09 Dec 2016) Changed paths: M client/galaxy/scripts/mvc/upload/composite/composite-row.js M client/galaxy/scripts/mvc/upload/default/default-row.js M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/default/default-row.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/default/default-row.js Log Message: ----------- Merge pull request #3292 from dannon/backport_upload_fn_escape [16.07] Upload file escaping backport. Commit: d6d2a12ec071e6cfa297944917ed201895f56332 https://github.com/galaxyproject/galaxy/commit/d6d2a12ec071e6cfa297944917ed… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2016-12-09 (Fri, 09 Dec 2016) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Merge branch 'release_16.07' into release_16.10 Conflicts: client/galaxy/scripts/mvc/upload/composite/composite-row.js client/galaxy/scripts/mvc/upload/default/default-row.js static/maps/mvc/upload/composite/composite-row.js.map static/maps/mvc/upload/default/default-row.js.map static/scripts/bundled/analysis.bundled.js static/scripts/bundled/analysis.bundled.js.map static/scripts/bundled/libs.bundled.js static/scripts/bundled/libs.bundled.js.map static/scripts/bundled/login.bundled.js.map static/scripts/mvc/upload/composite/composite-row.js static/scripts/mvc/upload/default/default-row.js Compare: https://github.com/galaxyproject/galaxy/compare/ca99753590ab...d6d2a12ec071

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[galaxyproject/galaxy] c315f1: Upload file escaping backport.
by GitHub 09 Dec '16

09 Dec '16

Branch: refs/heads/release_16.07 Home: https://github.com/galaxyproject/galaxy Commit: c315f1d74bc8b4c4c2e5d6f0d4acd02d64b89e43 https://github.com/galaxyproject/galaxy/commit/c315f1d74bc8b4c4c2e5d6f0d4ac… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-12-08 (Thu, 08 Dec 2016) Changed paths: M client/galaxy/scripts/mvc/upload/composite/composite-row.js M client/galaxy/scripts/mvc/upload/default/default-row.js M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/default/default-row.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/default/default-row.js Log Message: ----------- Upload file escaping backport. Commit: 602f2f2f1d431306c9aa64a6818c8feddaabb261 https://github.com/galaxyproject/galaxy/commit/602f2f2f1d431306c9aa64a6818c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-12-09 (Fri, 09 Dec 2016) Changed paths: M client/galaxy/scripts/mvc/upload/composite/composite-row.js M client/galaxy/scripts/mvc/upload/default/default-row.js M static/maps/mvc/upload/composite/composite-row.js.map M static/maps/mvc/upload/default/default-row.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/upload/composite/composite-row.js M static/scripts/mvc/upload/default/default-row.js Log Message: ----------- Merge pull request #3292 from dannon/backport_upload_fn_escape [16.07] Upload file escaping backport. Compare: https://github.com/galaxyproject/galaxy/compare/727270261750...602f2f2f1d43

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[galaxyproject/galaxy] 128a31: Use OSX-compatible sed syntax
by GitHub 09 Dec '16

09 Dec '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 128a3174ebc425dfe750767eef40374d0b282448 https://github.com/galaxyproject/galaxy/commit/128a3174ebc425dfe750767eef40… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2016-12-07 (Wed, 07 Dec 2016) Changed paths: M doc/Makefile Log Message: ----------- Use OSX-compatible sed syntax Commit: 3e0e96657d765f4023bb6801ace2e96a1ffc4505 https://github.com/galaxyproject/galaxy/commit/3e0e96657d765f4023bb6801ace2… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-12-07 (Wed, 07 Dec 2016) Changed paths: M doc/source/admin/index.rst M doc/source/admin/webhooks.rst M doc/source/releases/16.10.rst M doc/source/releases/16.10_announce.rst Log Message: ----------- add work on release notes 16.10, improve docs for webhooks Conflicts: doc/source/releases/16.10.rst doc/source/releases/16.10_announce.rst Commit: 739fb59cba5b7747a32e685a3632f96effad4c11 https://github.com/galaxyproject/galaxy/commit/739fb59cba5b7747a32e685a3632… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-12-07 (Wed, 07 Dec 2016) Changed paths: M doc/source/admin/webhooks.rst Log Message: ----------- fix the fix Commit: 5784a838a554f8dcf9e132e26be01240a37a3e65 https://github.com/galaxyproject/galaxy/commit/5784a838a554f8dcf9e132e26be0… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-12-07 (Wed, 07 Dec 2016) Changed paths: M doc/source/releases/16.10.rst Log Message: ----------- fix bad merge Commit: 83de83e7edc230d7f9841a6d9770d87d0c89d06f https://github.com/galaxyproject/galaxy/commit/83de83e7edc230d7f9841a6d9770… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-12-07 (Wed, 07 Dec 2016) Changed paths: M doc/source/admin/index.rst M doc/source/admin/webhooks.rst M doc/source/releases/16.10.rst M doc/source/releases/16.10_announce.rst Log Message: ----------- Merge pull request #3282 from martenson/release_16.10 [16.10] work on release notes 16.10 Commit: e3fbbc52b999f9e25e7b02c4edf44ddd43a63622 https://github.com/galaxyproject/galaxy/commit/e3fbbc52b999f9e25e7b02c4edf4… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-12-08 (Thu, 08 Dec 2016) Changed paths: M doc/source/releases/16.10_announce.rst Log Message: ----------- add small touches to release notes Commit: c01e25ddf8854e20a96040b3c8616136ec517574 https://github.com/galaxyproject/galaxy/commit/c01e25ddf8854e20a96040b3c861… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-12-08 (Thu, 08 Dec 2016) Changed paths: M doc/source/releases/16.10_announce.rst Log Message: ----------- missing articles Commit: 2cbf9a9138b6fb89d06f41398539908a5df4585e https://github.com/galaxyproject/galaxy/commit/2cbf9a9138b6fb89d06f41398539… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-12-08 (Thu, 08 Dec 2016) Changed paths: M doc/source/releases/16.10_announce.rst Log Message: ----------- Merge pull request #3284 from martenson/notes-tinies [16.10] add small touches to release notes Commit: 13ae374f84926e71b3dde7080d8d74ad443916e3 https://github.com/galaxyproject/galaxy/commit/13ae374f84926e71b3dde7080d8d… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2016-12-08 (Thu, 08 Dec 2016) Changed paths: M doc/Makefile A doc/fix_schema_rst.sh Log Message: ----------- Move sed commands to a script to resolve interferences with Make which happen only under OSX Commit: ca99753590abf62df2c34e80a87b1ae2ec3424e2 https://github.com/galaxyproject/galaxy/commit/ca99753590abf62df2c34e80a87b… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-12-08 (Thu, 08 Dec 2016) Changed paths: M doc/Makefile A doc/fix_schema_rst.sh Log Message: ----------- Merge pull request #3281 from nsoranzo/release_16.10_fix_doc_Makefile [16.10] Use OSX-compatible sed syntax Commit: 95305a3ee2bfbe4f9a54d7918f37d12735851b9d https://github.com/galaxyproject/galaxy/commit/95305a3ee2bfbe4f9a54d7918f37… Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk> Date: 2016-12-09 (Fri, 09 Dec 2016) Changed paths: M doc/Makefile A doc/fix_schema_rst.sh M doc/source/admin/index.rst M doc/source/admin/webhooks.rst M doc/source/releases/16.10.rst M doc/source/releases/16.10_announce.rst Log Message: ----------- Merge branch 'release_16.10' into dev Compare: https://github.com/galaxyproject/galaxy/compare/d478cc41a673...95305a3ee2bf

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