- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 14d6e3: Rename from_html to from_json
by GitHub 14 Mar '16

14 Mar '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 14d6e34e010cafd98d8db2680c4c339e727c968d https://github.com/galaxyproject/galaxy/commit/14d6e34e010cafd98d8db2680c4c… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-03-08 (Tue, 08 Mar 2016) Changed paths: M lib/galaxy/tools/evaluation.py M lib/galaxy/tools/parameters/__init__.py M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Rename from_html to from_json Commit: 40c9e1af255b548c35a9d98ac4c196058d185541 https://github.com/galaxyproject/galaxy/commit/40c9e1af255b548c35a9d98ac4c1… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M lib/galaxy/tools/__init__.py M lib/galaxy/tools/parameters/basic.py M test/unit/tools/test_column_parameters.py M test/unit/tools/test_data_parameters.py M test/unit/tools/test_select_parameters.py Log Message: ----------- Use value_to_basic and to_json when populating the tool model Commit: 773095d403929ad7f44561ff17f960f088f1b9ce https://github.com/galaxyproject/galaxy/commit/773095d403929ad7f44561ff17f9… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py M test/unit/tools/test_data_parameters.py Log Message: ----------- Unify json representation for regular datasets and collections Commit: b1a9823a3c596a303973b8e1dbbd734a67c392ef https://github.com/galaxyproject/galaxy/commit/b1a9823a3c596a303973b8e1dbbd… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py M lib/galaxy/workflow/modules.py Log Message: ----------- Remove RuntimeValue arrays Commit: 3c402a372338565bd4cf6056abc16da30c91a789 https://github.com/galaxyproject/galaxy/commit/3c402a372338565bd4cf6056abc1… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/workflow/modules.py Log Message: ----------- Remove __collection_reduce__ Commit: 79a0972675a3594292c7e28e36639d67d49863ad https://github.com/galaxyproject/galaxy/commit/79a0972675a3594292c7e28e3663… Author: guerler <aysam.guerler(a)gmail.com> Date: 2016-03-12 (Sat, 12 Mar 2016) Changed paths: M lib/galaxy/tools/parameters/basic.py Log Message: ----------- Improve empty dataset check, handle from_json inconsistency Commit: ff0bcd392015d7b824b99b15b271c8b6f608b589 https://github.com/galaxyproject/galaxy/commit/ff0bcd392015d7b824b99b15b271… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-03-14 (Mon, 14 Mar 2016) Changed paths: M lib/galaxy/tools/__init__.py M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/evaluation.py M lib/galaxy/tools/parameters/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/workflow/modules.py M test/unit/tools/test_column_parameters.py M test/unit/tools/test_data_parameters.py M test/unit/tools/test_select_parameters.py Log Message: ----------- Merge pull request #1901 from guerler/fix_basic_000 Use shared value serialization for tool model Compare: https://github.com/galaxyproject/galaxy/compare/5d633ab5999b...ff0bcd392015

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[galaxyproject/galaxy] e61e59: Modify run.sh to add --restart option, for a more ...
by GitHub 12 Mar '16

12 Mar '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: e61e596d88e4cc8f7cd41d2a2a678d5a3dffd72d https://github.com/galaxyproject/galaxy/commit/e61e596d88e4cc8f7cd41d2a2a67… Author: Remi Marenco <remi.marenco(a)gmail.com> Date: 2016-03-11 (Fri, 11 Mar 2016) Changed paths: M run.sh Log Message: ----------- Modify run.sh to add --restart option, for a more consisten use of parameters Commit: 5d633ab5999bbb59fb217185f9ff524df3445166 https://github.com/galaxyproject/galaxy/commit/5d633ab5999bbb59fb217185f9ff… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-03-12 (Sat, 12 Mar 2016) Changed paths: M run.sh Log Message: ----------- Merge pull request #1914 from remimarenco/run_restart_modification Modify run.sh to add --restart option, for a more consistent use of pa… Compare: https://github.com/galaxyproject/galaxy/compare/957a8ff885dc...5d633ab5999b

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[galaxyproject/galaxy] 3476c7: Split the path on 'repos', so that toolsheds that ...
by GitHub 11 Mar '16

11 Mar '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3476c7f92848ff650bc9d148ad95712adf45c8ae https://github.com/galaxyproject/galaxy/commit/3476c7f92848ff650bc9d148ad95… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2016-03-11 (Fri, 11 Mar 2016) Changed paths: M lib/galaxy/tools/toolbox/base.py Log Message: ----------- Split the path on 'repos', so that toolsheds that are on a subdirectory do not show errors when loading tools if there is actually no error. Commit: 957a8ff885dc0c20650971ada53d7b203dcd280f https://github.com/galaxyproject/galaxy/commit/957a8ff885dc0c20650971ada53d… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-03-11 (Fri, 11 Mar 2016) Changed paths: M lib/galaxy/tools/toolbox/base.py Log Message: ----------- Merge pull request #1910 from mvdbeek/fix_not_an_error_1 do not assume toolshed to be on URL root Compare: https://github.com/galaxyproject/galaxy/compare/8423fe74dfc3...957a8ff885dc

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[galaxyproject/galaxy] b3e939: Replace get_tool_shed_repository_by_tool_shed_name...
by GitHub 11 Mar '16

11 Mar '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: b3e9398c3affa964fdc8cf090eb5c149f7a6bf47 https://github.com/galaxyproject/galaxy/commit/b3e9398c3affa964fdc8cf090eb5… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2016-03-11 (Fri, 11 Mar 2016) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/tag_handler.py Log Message: ----------- Replace get_tool_shed_repository_by_tool_shed_name_owner_changeset_revision with get_repository_for_dependency_relationship Commit: d6e38c7d482eae65fc135cd65a13b7f215220cd5 https://github.com/galaxyproject/galaxy/commit/d6e38c7d482eae65fc135cd65a13… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2016-03-11 (Fri, 11 Mar 2016) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/tag_handler.py Log Message: ----------- remove unused import Commit: 5a50a4691c11edb9366f2e0d3eeb68aaaabb9c80 https://github.com/galaxyproject/galaxy/commit/5a50a4691c11edb9366f2e0d3eeb… Author: Nicola Soranzo <nsoranzo(a)tiscali.it> Date: 2016-03-11 (Fri, 11 Mar 2016) Changed paths: M lib/tool_shed/galaxy_install/tool_dependencies/recipe/tag_handler.py Log Message: ----------- Merge pull request #1909 from mvdbeek/backport_repository_for_dependency_relationship [16.01] Backport PR #1868 Compare: https://github.com/galaxyproject/galaxy/compare/3abd2c213ae5...5a50a4691c11

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[galaxyproject/galaxy] 50f108: Slight tweaks to our tabix usage. This fixes trac...
by GitHub 11 Mar '16

11 Mar '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 50f1089c72ff46397e525d4aa99dc80569081509 https://github.com/galaxyproject/galaxy/commit/50f1089c72ff46397e525d4aa99d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/visualization/data_providers/genome.py Log Message: ----------- Slight tweaks to our tabix usage. This fixes trackster without more divergence in our version of pysam. Commit: c6f3e9b5b28268cba1ef8d7be5f1bed90b6ecc00 https://github.com/galaxyproject/galaxy/commit/c6f3e9b5b28268cba1ef8d7be5f1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/visualization/data_providers/genome.py Log Message: ----------- Slight cleanup, remove outdated comment regarding tabixfile.close() Commit: f0b7a34dd3ea5b3b10494c7e186fb10fda30441f https://github.com/galaxyproject/galaxy/commit/f0b7a34dd3ea5b3b10494c7e186f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/webapps/galaxy/api/quotas.py Log Message: ----------- Apply patch from Fabien Mareuil to resolve json serialization of Decimal error; for more see http://dev.list.galaxyproject.org/quota-api-error-td4669081.html Commit: a351c75687921bb8d2487577c5c4c0a64bee5e5f https://github.com/galaxyproject/galaxy/commit/a351c75687921bb8d2487577c5c4… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/visualization/data_providers/genome.py Log Message: ----------- Extra documentation for @mvdbeek Commit: afb4e9c8f40da5331412c2a8f83ece814fb54b05 https://github.com/galaxyproject/galaxy/commit/afb4e9c8f40da5331412c2a8f83e… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M lib/galaxy/visualization/data_providers/genome.py Log Message: ----------- Merge pull request #1897 from dannon/pysam_compat [16.01] Slight tweaks to our tabix usage. Commit: 3abd2c213ae508bd3547d08729c96bbff4a5b740 https://github.com/galaxyproject/galaxy/commit/3abd2c213ae508bd3547d08729c9… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M lib/galaxy/webapps/galaxy/api/quotas.py Log Message: ----------- Merge pull request #1898 from dannon/quota_api_fix_fabien [16.01] Quota API issue with serialization to JSON of Decimal Commit: 8423fe74dfc3b5effa70e771fd6a58df01b85d02 https://github.com/galaxyproject/galaxy/commit/8423fe74dfc3b5effa70e771fd6a… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-11 (Fri, 11 Mar 2016) Changed paths: M lib/galaxy/visualization/data_providers/genome.py M lib/galaxy/webapps/galaxy/api/quotas.py Log Message: ----------- Merge branch 'release_16.01' into dev Compare: https://github.com/galaxyproject/galaxy/compare/dd07156e1109...8423fe74dfc3

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[galaxyproject/galaxy] 824c22: Very basic tool error sentry reporting.
by GitHub 11 Mar '16

11 Mar '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 824c22942e5619859f37ddb0319ef367ea4231f1 https://github.com/galaxyproject/galaxy/commit/824c22942e5619859f37ddb0319e… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/app.py M lib/galaxy/jobs/__init__.py Log Message: ----------- Very basic tool error sentry reporting. Commit: f46f1d58080a37e97d0add17dd95806af2987d4b https://github.com/galaxyproject/galaxy/commit/f46f1d58080a37e97d0add17dd95… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M lib/galaxy/jobs/__init__.py Log Message: ----------- Add tool version to title for grouping, and include path to tool config file. Commit: dd07156e1109f969a69be037c9122243bd4810d0 https://github.com/galaxyproject/galaxy/commit/dd07156e1109f969a69be037c912… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M lib/galaxy/app.py M lib/galaxy/jobs/__init__.py Log Message: ----------- Merge pull request #1900 from dannon/sentry_tool_errors Very basic tool error sentry reporting. Compare: https://github.com/galaxyproject/galaxy/compare/effdc314da3f...dd07156e1109

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[galaxyproject/galaxy] f0b7a3: Apply patch from Fabien Mareuil to resolve json se...
by GitHub 11 Mar '16

11 Mar '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: f0b7a34dd3ea5b3b10494c7e186fb10fda30441f https://github.com/galaxyproject/galaxy/commit/f0b7a34dd3ea5b3b10494c7e186f… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/webapps/galaxy/api/quotas.py Log Message: ----------- Apply patch from Fabien Mareuil to resolve json serialization of Decimal error; for more see http://dev.list.galaxyproject.org/quota-api-error-td4669081.html Commit: 3abd2c213ae508bd3547d08729c96bbff4a5b740 https://github.com/galaxyproject/galaxy/commit/3abd2c213ae508bd3547d08729c9… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M lib/galaxy/webapps/galaxy/api/quotas.py Log Message: ----------- Merge pull request #1898 from dannon/quota_api_fix_fabien [16.01] Quota API issue with serialization to JSON of Decimal Compare: https://github.com/galaxyproject/galaxy/compare/afb4e9c8f40d...3abd2c213ae5

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[galaxyproject/galaxy] 50f108: Slight tweaks to our tabix usage. This fixes trac...
by GitHub 11 Mar '16

11 Mar '16

Branch: refs/heads/release_16.01 Home: https://github.com/galaxyproject/galaxy Commit: 50f1089c72ff46397e525d4aa99dc80569081509 https://github.com/galaxyproject/galaxy/commit/50f1089c72ff46397e525d4aa99d… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/visualization/data_providers/genome.py Log Message: ----------- Slight tweaks to our tabix usage. This fixes trackster without more divergence in our version of pysam. Commit: c6f3e9b5b28268cba1ef8d7be5f1bed90b6ecc00 https://github.com/galaxyproject/galaxy/commit/c6f3e9b5b28268cba1ef8d7be5f1… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/visualization/data_providers/genome.py Log Message: ----------- Slight cleanup, remove outdated comment regarding tabixfile.close() Commit: a351c75687921bb8d2487577c5c4c0a64bee5e5f https://github.com/galaxyproject/galaxy/commit/a351c75687921bb8d2487577c5c4… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/visualization/data_providers/genome.py Log Message: ----------- Extra documentation for @mvdbeek Commit: afb4e9c8f40da5331412c2a8f83ece814fb54b05 https://github.com/galaxyproject/galaxy/commit/afb4e9c8f40da5331412c2a8f83e… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M lib/galaxy/visualization/data_providers/genome.py Log Message: ----------- Merge pull request #1897 from dannon/pysam_compat [16.01] Slight tweaks to our tabix usage. Compare: https://github.com/galaxyproject/galaxy/compare/0c34d5bd3ff4...afb4e9c8f40d

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[galaxyproject/usegalaxy-playbook] e8e310: Updated slide rotation.
by GitHub 10 Mar '16

10 Mar '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: e8e31070269b56b05c88d61174d4e411dca1a9c5 https://github.com/galaxyproject/usegalaxy-playbook/commit/e8e31070269b56b0… Author: tnabtaf <clements(a)galaxyproject.org> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: A files/galaxy/common/static/welcome_img/GCC2016OralAbstracts.png A files/galaxy/common/static/welcome_img/GCC2016ScholarshipsInternational.png A files/galaxy/common/static/welcome_img/RDF2GraphGalaxy.png M templates/galaxy/common/static/welcome.html.j2 Log Message: ----------- Updated slide rotation. Dropped PIA server; added RDF2Graph server. Added 2 GCC2016 deadline slides

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[galaxyproject/galaxy] 3f15d5: UI, histories: rework update system to check conte...
by GitHub 10 Mar '16

10 Mar '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3f15d5af213d4ba59e75f51c11b1aef4ed101428 https://github.com/galaxyproject/galaxy/commit/3f15d5af213d4ba59e75f51c11b1… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/history/multi-panel.js M lib/galaxy/managers/histories.py M lib/galaxy/managers/history_contents.py M lib/galaxy/model/__init__.py M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-model.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/history/multi-panel.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/history/history-model.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/history/multi-panel.js Log Message: ----------- UI, histories: rework update system to check contents based on update times of contents and only stop checking when history has no more running jobs Commit: 7855e0009d21dad14b998bae974d0978ff43c6c9 https://github.com/galaxyproject/galaxy/commit/7855e0009d21dad14b998bae974d… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-02-24 (Wed, 24 Feb 2016) Changed paths: M client/galaxy/scripts/galaxy.library.js M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/form/form-parameters.js M client/galaxy/scripts/mvc/form/form-section.js M client/galaxy/scripts/mvc/library/library-dataset-view.js M client/galaxy/scripts/mvc/library/library-folder-view.js M client/galaxy/scripts/mvc/tool/tool-form-workflow.js M client/galaxy/scripts/mvc/ui/popup-menu.js M client/galaxy/scripts/mvc/workflow/workflow-terminals.js M client/galaxy/scripts/mvc/workflow/workflow-view-node.js M client/galaxy/scripts/utils/utils.js M client/galaxy/style/less/library.less M config/datatypes_conf.xml.sample M doc/source/project/organization.rst M lib/galaxy/config.py M lib/galaxy/datatypes/assembly.py M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/display_applications/application.py M lib/galaxy/datatypes/genetics.py M lib/galaxy/datatypes/images.py M lib/galaxy/datatypes/ngsindex.py M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/datatypes/text.py M lib/galaxy/jobs/__init__.py M lib/galaxy/jobs/deferred/data_transfer.py M lib/galaxy/managers/configuration.py M lib/galaxy/managers/datasets.py M lib/galaxy/managers/taggable.py M lib/galaxy/managers/tags.py M lib/galaxy/managers/workflows.py M lib/galaxy/model/__init__.py M lib/galaxy/model/metadata.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/actions/__init__.py M lib/galaxy/tools/cwl/representation.py M lib/galaxy/tools/data_manager/manager.py M lib/galaxy/tools/evaluation.py M lib/galaxy/tools/parameters/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/tools/parameters/meta.py M lib/galaxy/tools/parameters/output_collect.py M lib/galaxy/tools/parameters/sanitize.py M lib/galaxy/tools/parameters/validation.py M lib/galaxy/tools/parser/output_collection_def.py M lib/galaxy/tools/test.py M lib/galaxy/tools/toolbox/base.py M lib/galaxy/util/__init__.py M lib/galaxy/util/sanitize_html.py M lib/galaxy/visualization/data_providers/registry.py M lib/galaxy/visualization/plugins/config_parser.py M lib/galaxy/visualization/plugins/plugin.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/base/controllers/admin.py M lib/galaxy/web/base/interactive_environments.py M lib/galaxy/web/form_builder.py M lib/galaxy/web/framework/base.py M lib/galaxy/web/framework/decorators.py M lib/galaxy/web/framework/helpers/__init__.py M lib/galaxy/web/framework/helpers/grids.py M lib/galaxy/web/framework/middleware/translogger.py M lib/galaxy/web/framework/webapp.py M lib/galaxy/webapps/galaxy/api/datasets.py M lib/galaxy/webapps/galaxy/api/jobs.py M lib/galaxy/webapps/galaxy/api/lda_datasets.py M lib/galaxy/webapps/galaxy/api/tools.py M lib/galaxy/webapps/galaxy/api/visualizations.py M lib/galaxy/webapps/galaxy/api/workflows.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/webapps/galaxy/controllers/data_manager.py M lib/galaxy/webapps/galaxy/controllers/dataset.py M lib/galaxy/webapps/galaxy/controllers/history.py M lib/galaxy/webapps/galaxy/controllers/library_common.py M 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test/unit/unittest_utils/galaxy_mock.py M test/unit/workflows/test_render.py M tox.ini Log Message: ----------- (merge conflicts) Commit: 8078306d9af4ce4ebff5b85f20290ee11c98177a https://github.com/galaxyproject/galaxy/commit/8078306d9af4ce4ebff5b85f2029… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-03-04 (Fri, 04 Mar 2016) Changed paths: M lib/galaxy/managers/histories.py Log Message: ----------- History manager: remove unused import Commit: c15e5db2eca3e177febe2da43bfa41b9bcbd4455 https://github.com/galaxyproject/galaxy/commit/c15e5db2eca3e177febe2da43bfa… Author: carlfeberhard <carlfeberhard(a)gmail.com> Date: 2016-03-07 (Mon, 07 Mar 2016) Changed paths: M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/mvc/tours.js M config/tool_conf.xml.main M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/tabular.py M lib/galaxy/external_services/result_handlers/basic.py M lib/galaxy/jobs/__init__.py M 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Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M client/galaxy/scripts/mvc/workflow/workflow-canvas.js M lib/galaxy/managers/workflows.py M lib/galaxy/tools/__init__.py M lib/galaxy/tools/parameters/basic.py M lib/galaxy/web/framework/base.py M lib/galaxy/webapps/galaxy/controllers/root.py M lib/galaxy/workflow/modules.py M lib/galaxy/workflow/run_request.py M lib/tool_shed/galaxy_install/tool_dependencies/recipe/tag_handler.py M lib/tool_shed/util/workflow_util.py M static/maps/mvc/dataset/dataset-li-edit.js.map M static/maps/mvc/workflow/workflow-canvas.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/dataset/dataset-li-edit.js M static/scripts/mvc/workflow/workflow-canvas.js M templates/webapps/galaxy/workflow/editor.mako M templates/webapps/galaxy/workflow/run.mako M test/unit/workflows/test_modules.py Log Message: ----------- (merge conflicts) Commit: 4fd5df6d58ac4ddab59006c5251bdf3ef723de68 https://github.com/galaxyproject/galaxy/commit/4fd5df6d58ac4ddab59006c5251b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- Rebuild client, bundles had unresolved conflicts committed previously. Commit: effdc314da3f05908eee4770354b457505bfffb4 https://github.com/galaxyproject/galaxy/commit/effdc314da3f05908eee4770354b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/history/multi-panel.js M lib/galaxy/managers/histories.py M lib/galaxy/managers/history_contents.py M lib/galaxy/model/__init__.py M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/history/history-model.js.map M static/maps/mvc/history/history-view.js.map M static/maps/mvc/history/multi-panel.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js M static/scripts/bundled/login.bundled.js.map M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/history/history-model.js M static/scripts/mvc/history/history-view.js M static/scripts/mvc/history/multi-panel.js Log Message: ----------- Merge branch 'history.updating' into dev Compare: https://github.com/galaxyproject/galaxy/compare/6b96f7d5abce...effdc314da3f

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