- galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] f91796: Swap unpinned requirements.txt and conda-environme...
by GitHub 10 Mar '16

10 Mar '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f91796d7a652d93d2fbcaafc16a7b0654ce4af2e https://github.com/galaxyproject/galaxy/commit/f91796d7a652d93d2fbcaafc16a7… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/dependencies/conda-environment.txt M lib/galaxy/dependencies/requirements.txt Log Message: ----------- Swap unpinned requirements.txt and conda-environment.txt svgfig->svgwrite Commit: a7b1ce76700b99de782fd3c031cc456b4090599f https://github.com/galaxyproject/galaxy/commit/a7b1ce76700b99de782fd3c031cc… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M doc/source/admin/framework_dependencies.rst Log Message: ----------- Update doc Commit: 6b96f7d5abce39ccb58c947b81daaeb5744bab2b https://github.com/galaxyproject/galaxy/commit/6b96f7d5abce39ccb58c947b81da… Author: John Chilton <jmchilton(a)gmail.com> Date: 2016-03-10 (Thu, 10 Mar 2016) Changed paths: M doc/source/admin/framework_dependencies.rst M lib/galaxy/dependencies/conda-environment.txt M lib/galaxy/dependencies/requirements.txt Log Message: ----------- Merge pull request #1896 from dannon/svgwrite_svgfig_deps svgfig->svgwrite in unpinned requirements Compare: https://github.com/galaxyproject/galaxy/compare/8311b7233f15...6b96f7d5abce

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[galaxyproject/usegalaxy-playbook] 4c874c: Update galaxyprojectdotorg.galaxy role
by GitHub 09 Mar '16

09 Mar '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 4c874c3cdf1cbf6e1a3d687cafc5ee324dc7402d https://github.com/galaxyproject/usegalaxy-playbook/commit/4c874c3cdf1cbf6e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M roles/galaxyprojectdotorg.galaxy/README.md M roles/galaxyprojectdotorg.galaxy/defaults/main.yml M roles/galaxyprojectdotorg.galaxy/meta/.galaxy_install_info M roles/galaxyprojectdotorg.galaxy/tasks/dependencies.yml M roles/galaxyprojectdotorg.galaxy/tasks/main.yml Log Message: ----------- Update galaxyprojectdotorg.galaxy role

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[galaxyproject/ansible-galaxy]
by GitHub 09 Mar '16

09 Mar '16

Branch: refs/tags/0.6.3 Home: https://github.com/galaxyproject/ansible-galaxy

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[galaxyproject/ansible-galaxy] e2393a: Use pinned-requirements.txt when fetching.
by GitHub 09 Mar '16

09 Mar '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/ansible-galaxy Commit: e2393aff87eb91dd283d09723a6eba2ea95780a4 https://github.com/galaxyproject/ansible-galaxy/commit/e2393aff87eb91dd283d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M README.md M defaults/main.yml M tasks/dependencies.yml Log Message: ----------- Use pinned-requirements.txt when fetching.

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[galaxyproject/usegalaxy-playbook] aa43ac: Update Main
by GitHub 09 Mar '16

09 Mar '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: aa43ac5e18e08358cb98ffa20cd643ad85845434 https://github.com/galaxyproject/usegalaxy-playbook/commit/aa43ac5e18e08358… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M production/group_vars/all.yml Log Message: ----------- Update Main Commit: c24f864205e9b58998befe56ff245eacac0ed5d7 https://github.com/galaxyproject/usegalaxy-playbook/commit/c24f864205e9b589… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M production/files/interactive_environments/plugins/.ansible_ie_role_current_version M production/files/interactive_environments/proxy/.ansible_ie_role_current_version Log Message: ----------- Update IE versions Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/14427de5dd47...…

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[galaxyproject/galaxy] 9b251e: Tones down the warning message about tool changes
by GitHub 09 Mar '16

09 Mar '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9b251e567b0a1d5c7600d6aae7df7f22c7831700 https://github.com/galaxyproject/galaxy/commit/9b251e567b0a1d5c7600d6aae7df… Author: Brad Langhorst <brad(a)langhorst.com> Date: 2016-03-08 (Tue, 08 Mar 2016) Changed paths: M templates/webapps/galaxy/workflow/run.mako Log Message: ----------- Tones down the warning message about tool changes This looked like an error to people here. I think this proposed language is a bit softer, but still conveys the message that users can proceed but should review the changes first to make sure their results will not be affected. Commit: 079d645bebad8b531d926f08703c5a2ae180b9d5 https://github.com/galaxyproject/galaxy/commit/079d645bebad8b531d926f08703c… Author: Brad Langhorst <brad(a)langhorst.com> Date: 2016-03-08 (Tue, 08 Mar 2016) Changed paths: M templates/webapps/galaxy/workflow/run.mako Log Message: ----------- typo fix Commit: 7955a2b769d02e57ed609b636621cd76d27bc3a8 https://github.com/galaxyproject/galaxy/commit/7955a2b769d02e57ed609b636621… Author: Brad Langhorst <brad(a)langhorst.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M templates/webapps/galaxy/workflow/run.mako Log Message: ----------- Update run.mako Commit: 8311b7233f15c04596322db57ca232e8f368d318 https://github.com/galaxyproject/galaxy/commit/8311b7233f15c04596322db57ca2… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M templates/webapps/galaxy/workflow/run.mako Log Message: ----------- Merge pull request #1893 from bwlang/patch-1 Tones down the warning message about tool changes Compare: https://github.com/galaxyproject/galaxy/compare/cd26a567e84b...8311b7233f15

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[galaxyproject/galaxy] 8d71c3: Change to sentry middleware to work with modern ra...
by GitHub 09 Mar '16

09 Mar '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8d71c3dc1b7ed1ad33f60af1f1fe71e4c7ece108 https://github.com/galaxyproject/galaxy/commit/8d71c3dc1b7ed1ad33f60af1f1fe… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-03-08 (Tue, 08 Mar 2016) Changed paths: M lib/galaxy/web/framework/middleware/sentry.py Log Message: ----------- Change to sentry middleware to work with modern raven clients. This allows us to upgrade raven and actually show the entire event_id to users on the guru meditation page. Commit: cd26a567e84bbe736d3dcfbcbe37da7070045823 https://github.com/galaxyproject/galaxy/commit/cd26a567e84bbe736d3dcfbcbe37… Author: Marius van den Beek <m.vandenbeek(a)gmail.com> Date: 2016-03-09 (Wed, 09 Mar 2016) Changed paths: M lib/galaxy/web/framework/middleware/sentry.py Log Message: ----------- Merge pull request #1895 from dannon/sentry_event_id Change to sentry middleware to work with modern raven clients. Compare: https://github.com/galaxyproject/galaxy/compare/36d85e81eecd...cd26a567e84b

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[galaxyproject/usegalaxy-playbook] 14427d: Mutable configs on Test + fix the Test config to r...
by GitHub 08 Mar '16

08 Mar '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 14427de5dd473ae9020b4ea2118e6f91c6f2d715 https://github.com/galaxyproject/usegalaxy-playbook/commit/14427de5dd473ae9… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-03-08 (Tue, 08 Mar 2016) Changed paths: M files/galaxy/test.galaxyproject.org/var/shed_data_manager_conf.xml M stage/group_vars/galaxyservers.yml Log Message: ----------- Mutable configs on Test + fix the Test config to remove a duplication

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[galaxyproject/usegalaxy-playbook] 195454: Update Test
by GitHub 08 Mar '16

08 Mar '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 195454dc2362dee23e9170e2990cba5f875ef016 https://github.com/galaxyproject/usegalaxy-playbook/commit/195454dc2362dee2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-03-08 (Tue, 08 Mar 2016) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update Test

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[galaxyproject/infrastructure-playbook] 9e9077: Install sentry on galaxy06
by GitHub 08 Mar '16

08 Mar '16

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 9e9077c991fc7ec0b6ef5ab317d7262723a6a6b4 https://github.com/galaxyproject/infrastructure-playbook/commit/9e9077c991f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2016-03-08 (Tue, 08 Mar 2016) Changed paths: M common_roles A roles/sentry/defaults/main.yml A roles/sentry/tasks/main.yml A roles/sentry/templates/redis.conf.j2 A roles/sentry/templates/sentry.conf.py.j2 A roles/sentry/templates/uwsgi.ini.j2 M taccenv/group_vars/statsservers.yml M taccenv/host_vars/galaxy06.tacc.utexas.edu.yml M taccenv/playbook.yml M taccenv/secret_group_vars/ssl.yml M taccenv/templates/nginx/sentry.j2 A taccenv/templates/supervisor/sentry.j2 Log Message: ----------- Install sentry on galaxy06

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