- galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] 7f140f: Update GCC2016 redirect
by GitHub 02 Dec '15

02 Dec '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 7f140f63d6095f01123da96fe6aed62f529c0614 https://github.com/galaxyproject/usegalaxy-playbook/commit/7f140f63d6095f01… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-12-01 (Tue, 01 Dec 2015) Changed paths: M templates/nginx/galaxyproject.j2 Log Message: ----------- Update GCC2016 redirect

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[galaxyproject/infrastructure-playbook] 8597fd: Allow jenkins to log in to mjolnir0 for building w...
by GitHub 01 Dec '15

01 Dec '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 8597fdb06f69c4b0cade4b9e8f363aebe3c67704 https://github.com/galaxyproject/infrastructure-playbook/commit/8597fdb06f6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-12-01 (Tue, 01 Dec 2015) Changed paths: M galaxyenv/group_vars/starforgebuilders.yml M galaxyenv/secret_group_vars/all.yml M galaxyenv/secret_host_vars/leeroy.galaxyproject.org.yml M galaxyenv/secret_host_vars/mjolnir0.galaxyproject.org.yml Log Message: ----------- Allow jenkins to log in to mjolnir0 for building wheels

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[galaxyproject/infrastructure-playbook] 843efb: Update common roles
by GitHub 01 Dec '15

01 Dec '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 843efba2e84bcdf907c267488e62d697e8a5d5e1 https://github.com/galaxyproject/infrastructure-playbook/commit/843efba2e84… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-12-01 (Tue, 01 Dec 2015) Changed paths: M common_roles Log Message: ----------- Update common roles

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[galaxyproject/galaxy] 2e9755: Filter download links
by GitHub 01 Dec '15

01 Dec '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 2e97553194a0e13dc4158c29a161c0b678bcd02e https://github.com/galaxyproject/galaxy/commit/2e97553194a0e13dc4158c29a161… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-11-28 (Sat, 28 Nov 2015) Changed paths: M client/galaxy/scripts/galaxy.frame.js M client/galaxy/scripts/galaxy.masthead.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/tools/tools-form-base.js M client/galaxy/scripts/mvc/ui/ui-buttons.js M static/maps/galaxy.frame.js.map M static/maps/galaxy.masthead.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/tools/tools-form-base.js.map M static/maps/mvc/ui/ui-buttons.js.map M static/scripts/galaxy.frame.js M static/scripts/galaxy.masthead.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/tools/tools-form-base.js M static/scripts/mvc/ui/ui-buttons.js Log Message: ----------- Filter download links Commit: 84464288b18ca587334dba89c9fd011c7f3a0fc6 https://github.com/galaxyproject/galaxy/commit/84464288b18ca587334dba89c9fd… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-12-01 (Tue, 01 Dec 2015) Changed paths: M client/galaxy/scripts/galaxy.frame.js M client/galaxy/scripts/galaxy.masthead.js M client/galaxy/scripts/mvc/dataset/dataset-li.js M client/galaxy/scripts/mvc/tools/tools-form-base.js M client/galaxy/scripts/mvc/ui/ui-buttons.js M static/maps/galaxy.frame.js.map M static/maps/galaxy.masthead.js.map M static/maps/mvc/dataset/dataset-li.js.map M static/maps/mvc/tools/tools-form-base.js.map M static/maps/mvc/ui/ui-buttons.js.map M static/scripts/galaxy.frame.js M static/scripts/galaxy.masthead.js M static/scripts/mvc/dataset/dataset-li.js M static/scripts/mvc/tools/tools-form-base.js M static/scripts/mvc/ui/ui-buttons.js Log Message: ----------- Merge pull request #1184 from guerler/fix_download_links_002 Filter download links, avoid warning dialog Compare: https://github.com/galaxyproject/galaxy/compare/3524476bc6c7...84464288b18c

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[galaxyproject/galaxy] 5bd898: deprecate TS direct hg api
by GitHub 01 Dec '15

01 Dec '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5bd898118f96ff30093fcd932de3483fee028453 https://github.com/galaxyproject/galaxy/commit/5bd898118f96ff30093fcd932de3… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-30 (Mon, 30 Nov 2015) Changed paths: M doc/source/releases/15.10_announce.rst Log Message: ----------- deprecate TS direct hg api Commit: da2cc588e5a5c4ee528ad1c6e406fe7837d58e8e https://github.com/galaxyproject/galaxy/commit/da2cc588e5a5c4ee528ad1c6e406… Author: Eric Rasche <rasche.eric(a)gmail.com> Date: 2015-11-30 (Mon, 30 Nov 2015) Changed paths: M doc/source/releases/15.10_announce.rst Log Message: ----------- Merge pull request #1194 from martenson/release_15.10 [15.10] docs - deprecate TS direct hg api Commit: 3524476bc6c75461fd8b793a3bf047d1ad475e2a https://github.com/galaxyproject/galaxy/commit/3524476bc6c75461fd8b793a3bf0… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-12-01 (Tue, 01 Dec 2015) Changed paths: M doc/source/releases/15.10_announce.rst Log Message: ----------- Merge branch 'master' into dev Compare: https://github.com/galaxyproject/galaxy/compare/9e28f2e786bc...3524476bc6c7

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[galaxyproject/galaxy] 5bd898: deprecate TS direct hg api
by GitHub 01 Dec '15

01 Dec '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/galaxy Commit: 5bd898118f96ff30093fcd932de3483fee028453 https://github.com/galaxyproject/galaxy/commit/5bd898118f96ff30093fcd932de3… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-30 (Mon, 30 Nov 2015) Changed paths: M doc/source/releases/15.10_announce.rst Log Message: ----------- deprecate TS direct hg api Commit: da2cc588e5a5c4ee528ad1c6e406fe7837d58e8e https://github.com/galaxyproject/galaxy/commit/da2cc588e5a5c4ee528ad1c6e406… Author: Eric Rasche <rasche.eric(a)gmail.com> Date: 2015-11-30 (Mon, 30 Nov 2015) Changed paths: M doc/source/releases/15.10_announce.rst Log Message: ----------- Merge pull request #1194 from martenson/release_15.10 [15.10] docs - deprecate TS direct hg api Compare: https://github.com/galaxyproject/galaxy/compare/a03404c04d41...da2cc588e5a5

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[galaxyproject/usegalaxy-playbook] e73878: update MTS
by GitHub 01 Dec '15

01 Dec '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: e73878d845f6937e17e6902283c45b3f9d3fc0fe https://github.com/galaxyproject/usegalaxy-playbook/commit/e73878d845f6937e… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-30 (Mon, 30 Nov 2015) Changed paths: M production/group_vars/toolshedservers.yml Log Message: ----------- update MTS

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commit/galaxy-central: natefoo: Create branch release_15.10
by commits-noreply＠bitbucket.org 01 Dec '15

01 Dec '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/af33af5cfc6b/ Changeset: af33af5cfc6b Branch: release_15.10 User: natefoo Date: 2015-11-30 19:39:18+00:00 Summary: Create branch release_15.10 Affected #: 0 files Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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[galaxyproject/galaxy] 5bd898: deprecate TS direct hg api
by GitHub 01 Dec '15

01 Dec '15

Branch: refs/heads/release_15.10 Home: https://github.com/galaxyproject/galaxy Commit: 5bd898118f96ff30093fcd932de3483fee028453 https://github.com/galaxyproject/galaxy/commit/5bd898118f96ff30093fcd932de3… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-30 (Mon, 30 Nov 2015) Changed paths: M doc/source/releases/15.10_announce.rst Log Message: ----------- deprecate TS direct hg api Commit: da2cc588e5a5c4ee528ad1c6e406fe7837d58e8e https://github.com/galaxyproject/galaxy/commit/da2cc588e5a5c4ee528ad1c6e406… Author: Eric Rasche <rasche.eric(a)gmail.com> Date: 2015-11-30 (Mon, 30 Nov 2015) Changed paths: M doc/source/releases/15.10_announce.rst Log Message: ----------- Merge pull request #1194 from martenson/release_15.10 [15.10] docs - deprecate TS direct hg api Compare: https://github.com/galaxyproject/galaxy/compare/a03404c04d41...da2cc588e5a5

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[galaxyproject/galaxy] 95507c: fix whitespace
by GitHub 01 Dec '15

01 Dec '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/galaxy Commit: 95507c5d02cd56199c232a8cd829e46c3f43ef7a https://github.com/galaxyproject/galaxy/commit/95507c5d02cd56199c232a8cd829… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-23 (Mon, 23 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/library/library-folderrow-view.js Log Message: ----------- fix whitespace Commit: e142beaffe1ee6aa853bbdb211ccf3fe1beb509e https://github.com/galaxyproject/galaxy/commit/e142beaffe1ee6aa853bbdb211cc… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-23 (Mon, 23 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/library/library-folderrow-view.js M static/maps/mvc/library/library-folderrow-view.js.map M static/scripts/mvc/library/library-folderrow-view.js Log Message: ----------- replace wrong class name Commit: 39bc057ef9d9e62f08e3c0dbdb95d14a1ae295d2 https://github.com/galaxyproject/galaxy/commit/39bc057ef9d9e62f08e3c0dbdb95… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-23 (Mon, 23 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- fix whitespace Commit: e19b7f656f6750cc87f7d3e7f0eb12d4292d1987 https://github.com/galaxyproject/galaxy/commit/e19b7f656f6750cc87f7d3e7f0eb… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-23 (Mon, 23 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- fix the extra slash in URL when creating folder Commit: 87b9d1a5f44a6e42397694e16f17c97c504c1b27 https://github.com/galaxyproject/galaxy/commit/87b9d1a5f44a6e42397694e16f17… Author: Greg Von Kuster <ghv2(a)psu.edu> Date: 2015-11-28 (Sat, 28 Nov 2015) Changed paths: M lib/galaxy/datatypes/interval.py Log Message: ----------- Add support for Strand-specific COordinate Count datatype Commit: 6fdff2d2f88458cef6f29ee3cb8bb895babab62c https://github.com/galaxyproject/galaxy/commit/6fdff2d2f88458cef6f29ee3cb8b… Author: Greg Von Kuster <ghv2(a)psu.edu> Date: 2015-11-28 (Sat, 28 Nov 2015) Changed paths: M config/datatypes_conf.xml.sample Log Message: ----------- Add Strand-specific Coordinate Count datatype entry to the datatypes config. Commit: 21fad8ac88a46996b2ff2719527709374f0c9913 https://github.com/galaxyproject/galaxy/commit/21fad8ac88a46996b2ff27195277… Author: Greg Von Kuster <ghv2(a)psu.edu> Date: 2015-11-30 (Mon, 30 Nov 2015) Changed paths: M lib/galaxy/datatypes/interval.py Log Message: ----------- Set the column names and edit the comments section Commit: c532f6808efda37be88a0519e3c44ad523541fa9 https://github.com/galaxyproject/galaxy/commit/c532f6808efda37be88a0519e3c4… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-11-30 (Mon, 30 Nov 2015) Changed paths: M config/datatypes_conf.xml.sample M lib/galaxy/datatypes/interval.py Log Message: ----------- Merge pull request #1186 from gregvonkuster/release_15.10 [15.10] Add support for Strand-specific Coordinate Count datatype Commit: a03404c04d41156dd5f962a72a0ca3913969f14f https://github.com/galaxyproject/galaxy/commit/a03404c04d41156dd5f962a72a0c… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-11-30 (Mon, 30 Nov 2015) Changed paths: M client/galaxy/scripts/mvc/library/library-folderrow-view.js M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js M static/maps/mvc/library/library-folderrow-view.js.map M static/maps/mvc/library/library-foldertoolbar-view.js.map M static/scripts/mvc/library/library-folderrow-view.js M static/scripts/mvc/library/library-foldertoolbar-view.js Log Message: ----------- Merge pull request #1162 from martenson/fix-datalibs [15.10] Fix two bugs in datalibs Compare: https://github.com/galaxyproject/galaxy/compare/a5200a4d5f97...a03404c04d41

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