- galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] 83fc23: show 'Test' in the masthead on Test; update dispos...
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 83fc23c1d5be14f351a8718f1b7fa2c4c1b5bedc https://github.com/galaxyproject/usegalaxy-playbook/commit/83fc23c1d5be14f3… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M stage/group_vars/galaxyservers.yml M stage/secret_vars/galaxyservers.yml Log Message: ----------- show 'Test' in the masthead on Test; update disposable domain list

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[galaxyproject/infrastructure-playbook] 6547ae: add python-virtualenv package to n2, remove whites...
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 6547ae51e15e02470019d0700d2995fcdd8fa1d2 https://github.com/galaxyproject/infrastructure-playbook/commit/6547ae51e15… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M galaxyenv/host_vars/n2.galaxyproject.org.yml Log Message: ----------- add python-virtualenv package to n2, remove whitespace Commit: 10afb69d72a5f1f1fcaf82ab00195b0319b86628 https://github.com/galaxyproject/infrastructure-playbook/commit/10afb69d72a… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M common_roles Log Message: ----------- Rev common_roles. Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/dc91d3c8e8…

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[galaxyproject/usegalaxy-playbook] bf2a23: Update Main Galaxy and Pulsar, enable AMQP acknowl...
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: bf2a23c417dd527d3f0a7f799fb6e95ff7c3604e https://github.com/galaxyproject/usegalaxy-playbook/commit/bf2a23c417dd527d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M production/group_vars/all.yml M production/group_vars/pulsarservers.yml M production/host_vars/login5.stampede.tacc.utexas.edu.yml M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Update Main Galaxy and Pulsar, enable AMQP acknowledgements

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[galaxyproject/usegalaxy-playbook] 659dbc: Update Test
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 659dbced678c878d79b396982d9b046fb03dc4f5 https://github.com/galaxyproject/usegalaxy-playbook/commit/659dbced678c878d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update Test

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[galaxyproject/galaxy] d41c13: Fix for logging in using OpenID when the OpenID is...
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: d41c137e2d6b4d9871bb25c5162745dda36e2f31 https://github.com/galaxyproject/galaxy/commit/d41c137e2d6b4d9871bb25c51627… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-09-11 (Fri, 11 Sep 2015) Changed paths: M templates/user/login.mako Log Message: ----------- Fix for logging in using OpenID when the OpenID isn't associated with a user yet. (cherry picked from commit 451196e4d39800995d7b1ea1f69b177294c3c632) Commit: 358dc4071462347dacecd1f6ec125d650b261db0 https://github.com/galaxyproject/galaxy/commit/358dc4071462347dacecd1f6ec12… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-09-11 (Fri, 11 Sep 2015) Changed paths: M templates/user/login.mako Log Message: ----------- Merge pull request #718 from blankenberg/openid_15.07 [15.07] Fix for logging in using OpenID when the OpenID isn't associated with a user yet. Commit: 88abd3451d1b8cb7161fde7559684d5378dc76fc https://github.com/galaxyproject/galaxy/commit/88abd3451d1b8cb7161fde755968… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-11 (Fri, 11 Sep 2015) Changed paths: M lib/pulsar/client/amqp_exchange.py Log Message: ----------- Merge pull request #719 from natefoo/amqp_ack [15.07] Pulsar client: Fix deepcopy() error with copying the errback method from PulsarExchange. Commit: d3bd0fa57765bd2d03f255099c2b4f0501ac6466 https://github.com/galaxyproject/galaxy/commit/d3bd0fa57765bd2d03f255099c2b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/model/__init__.py Log Message: ----------- Do not change the state of jobs if a state update is received after they are set to a terminal state. Commit: 85552f73f712a9491af8d141a27369b21b615075 https://github.com/galaxyproject/galaxy/commit/85552f73f712a9491af8d141a273… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/model/__init__.py Log Message: ----------- Merge pull request #737 from natefoo/job-terminal-update [15.07] Don't update the state of terminal jobs Commit: 43c13ee1626779a4127f67b564ee88bb6b9af3ca https://github.com/galaxyproject/galaxy/commit/43c13ee1626779a4127f67b564ee… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/model/__init__.py Log Message: ----------- Merge branch 'release_15.07' into dev Conflicts: lib/galaxy/model/__init__.py Compare: https://github.com/galaxyproject/galaxy/compare/1e2adc6b5703...43c13ee16267

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[galaxyproject/galaxy] d3bd0f: Do not change the state of jobs if a state update ...
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/release_15.07 Home: https://github.com/galaxyproject/galaxy Commit: d3bd0fa57765bd2d03f255099c2b4f0501ac6466 https://github.com/galaxyproject/galaxy/commit/d3bd0fa57765bd2d03f255099c2b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/model/__init__.py Log Message: ----------- Do not change the state of jobs if a state update is received after they are set to a terminal state. Commit: 85552f73f712a9491af8d141a27369b21b615075 https://github.com/galaxyproject/galaxy/commit/85552f73f712a9491af8d141a273… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M lib/galaxy/jobs/__init__.py M lib/galaxy/model/__init__.py Log Message: ----------- Merge pull request #737 from natefoo/job-terminal-update [15.07] Don't update the state of terminal jobs Compare: https://github.com/galaxyproject/galaxy/compare/88abd3451d1b...85552f73f712

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[galaxyproject/infrastructure-playbook] dc91d3: add jenkins to the docker group
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: dc91d3c8e8dc57e05bd9efa0022c0d237edfbcd9 https://github.com/galaxyproject/infrastructure-playbook/commit/dc91d3c8e8d… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M galaxyenv/host_vars/n2.galaxyproject.org.yml Log Message: ----------- add jenkins to the docker group jenkins user was created by apt

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[galaxyproject/infrastructure-playbook] 6a54a5: Install packages before managing local users
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 6a54a5f3801a01a016124167b9dae56a9e227fdd https://github.com/galaxyproject/infrastructure-playbook/commit/6a54a5f3801… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M playbook.yml Log Message: ----------- Install packages before managing local users Allows managing properties of apt managed users.

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[galaxyproject/infrastructure-playbook] c90d0f: add more packages to n2; add backports
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: c90d0f928a4c618ad756eea52b4added68cb5830 https://github.com/galaxyproject/infrastructure-playbook/commit/c90d0f928a4… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M galaxyenv/host_vars/n2.galaxyproject.org.yml Log Message: ----------- add more packages to n2; add backports

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[galaxyproject/infrastructure-playbook] 5a2674: fix packages to host_packages so it actually gets ...
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 5a2674a9c9a06ad8345077298486d19fc4df86e7 https://github.com/galaxyproject/infrastructure-playbook/commit/5a2674a9c9a… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M galaxyenv/host_vars/n2.galaxyproject.org.yml Log Message: ----------- fix packages to host_packages so it actually gets recognized

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