- galaxy-commits - lists.galaxyproject.org

[galaxyproject/infrastructure-playbook] 49e5db: add TS dependencies in order to get func tests wor...
by GitHub 16 Sep '15

16 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 49e5dba92773f83924e4c145fac09670726fa31b https://github.com/galaxyproject/infrastructure-playbook/commit/49e5dba9277… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-16 (Wed, 16 Sep 2015) Changed paths: M galaxyenv/host_vars/n2.galaxyproject.org.yml Log Message: ----------- add TS dependencies in order to get func tests working

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[galaxyproject/galaxy] 89cc67: Trigger iframe event for history
by GitHub 15 Sep '15

15 Sep '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 89cc67baf67e295b3eaa2449e6fd6727317df942 https://github.com/galaxyproject/galaxy/commit/89cc67baf67e295b3eaa2449e6fd… Author: guerler <aysam.guerler(a)gmail.com> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M client/galaxy/scripts/galaxy-app-base.js M client/galaxy/scripts/mvc/app/app-analysis.js M static/maps/mvc/app/app-analysis.js.map M static/scripts/mvc/app/app-analysis.js Log Message: ----------- Trigger iframe event for history Commit: 1e2adc6b57034fb27b3a12f0a13d6f0ace1b096a https://github.com/galaxyproject/galaxy/commit/1e2adc6b57034fb27b3a12f0a13d… Author: carlfeberhard <carlfeberhard(a)users.noreply.github.com> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M client/galaxy/scripts/galaxy-app-base.js M client/galaxy/scripts/mvc/app/app-analysis.js M static/maps/mvc/app/app-analysis.js.map M static/scripts/mvc/app/app-analysis.js Log Message: ----------- Merge pull request #732 from guerler/fix_history_001 Trigger iframe event for history Compare: https://github.com/galaxyproject/galaxy/compare/71a1def3219d...1e2adc6b5703

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[galaxyproject/galaxy] 555b6d: Fix for 13ea86753ad778aaaf6e6470a9370190fc2e91a0.
by GitHub 15 Sep '15

15 Sep '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 555b6d745d245d5fa6d6868e92cc3797d6855343 https://github.com/galaxyproject/galaxy/commit/555b6d745d245d5fa6d6868e92cc… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M lib/galaxy/managers/collections.py Log Message: ----------- Fix for 13ea86753ad778aaaf6e6470a9370190fc2e91a0. Fixes tests and functionality broken with 13ea86753ad778aaaf6e6470a9370190fc2e91a0 as spotted by eagle eye @nsoranzo here https://github.com/galaxyproject/galaxy/commit/13ea86753ad778aaaf6e6470a937…. Commit: 71a1def3219db8763e76b87a4bb1aefdfdc082d3 https://github.com/galaxyproject/galaxy/commit/71a1def3219db8763e76b87a4bb1… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M lib/galaxy/managers/collections.py Log Message: ----------- Merge pull request #735 from jmchilton/collection_fix Fix for 13ea86753ad778aaaf6e6470a9370190fc2e91a0. Compare: https://github.com/galaxyproject/galaxy/compare/89b42bf06034...71a1def3219d

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[galaxyproject/infrastructure-playbook] 80bb94: Update README.md
by GitHub 15 Sep '15

15 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 80bb94e97d6cb83b07e1f40b2575a933734c2a72 https://github.com/galaxyproject/infrastructure-playbook/commit/80bb94e97d6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M README.md Log Message: ----------- Update README.md

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[galaxyproject/galaxy] 3fafbb: Fix more MissingToolException when running "./run_...
by GitHub 15 Sep '15

15 Sep '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 3fafbb5e34ed3f6f547bf1f184782b0f6967cf2f https://github.com/galaxyproject/galaxy/commit/3fafbb5e34ed3f6f547bf1f18478… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M test/api/test_workflow_extraction.py Log Message: ----------- Fix more MissingToolException when running "./run_tests.sh -api" without "-with_framework_test_tools". Commit: 63d1715679fb714f4c8f5ae426106edf6988e7ab https://github.com/galaxyproject/galaxy/commit/63d1715679fb714f4c8f5ae42610… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M lib/galaxy/tools/__init__.py Log Message: ----------- Fix API tests using collection_creates_pair tool. Commit: 89b42bf0603433b2b66a264c9a3a3d3fe4e12280 https://github.com/galaxyproject/galaxy/commit/89b42bf0603433b2b66a264c9a3a… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M lib/galaxy/tools/__init__.py M test/api/test_workflow_extraction.py Log Message: ----------- Merge pull request #731 from nsoranzo/dev Fix more API tests. Compare: https://github.com/galaxyproject/galaxy/compare/4671ae8d4509...89b42bf06034

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[galaxyproject/infrastructure-playbook] fb8175: add virtualenv to n2
by GitHub 15 Sep '15

15 Sep '15

Branch: refs/heads/martenson-patch-2 Home: https://github.com/galaxyproject/infrastructure-playbook Commit: fb81757b634892f1b717b68a7ee3275a5e1ec2e1 https://github.com/galaxyproject/infrastructure-playbook/commit/fb81757b634… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M galaxyenv/host_vars/n2.galaxyproject.org.yml Log Message: ----------- add virtualenv to n2

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[galaxyproject/infrastructure-playbook] 41f8d6: install postgresql-9.4 on n2
by GitHub 15 Sep '15

15 Sep '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 41f8d6cc7e261b9f200ccc8e0efb57e41d8e846f https://github.com/galaxyproject/infrastructure-playbook/commit/41f8d6cc7e2… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-09-14 (Mon, 14 Sep 2015) Changed paths: M galaxyenv/host_vars/n2.galaxyproject.org.yml Log Message: ----------- install postgresql-9.4 on n2 Commit: eafac90f95fb5e7674655ccc98419d9d4f3341fc https://github.com/galaxyproject/infrastructure-playbook/commit/eafac90f95f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M galaxyenv/host_vars/n2.galaxyproject.org.yml Log Message: ----------- Merge pull request #1 from galaxyproject/martenson-patch-1 install postgresql-9.4 on n2 Compare: https://github.com/galaxyproject/infrastructure-playbook/compare/113caf158f…

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[galaxyproject/galaxy] 23051d: When rerunning a job w/ remap, reassociate PostJob...
by GitHub 15 Sep '15

15 Sep '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 23051da68c88f1173be8094c2597cc60cb054f27 https://github.com/galaxyproject/galaxy/commit/23051da68c88f1173be8094c2597… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M lib/galaxy/tools/actions/__init__.py Log Message: ----------- When rerunning a job w/ remap, reassociate PostJobActions when possible to the new job. Commit: 4671ae8d45092824db2f7b19b7d6896e6524c672 https://github.com/galaxyproject/galaxy/commit/4671ae8d45092824db2f7b19b7d6… Author: John Chilton <jmchilton(a)gmail.com> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M lib/galaxy/tools/actions/__init__.py Log Message: ----------- Merge pull request #730 from dannon/pja_wf_rerun_fix When rerunning a job w/ remap, reassociate PostJobActions when possib… Compare: https://github.com/galaxyproject/galaxy/compare/1ea1da02291d...4671ae8d4509

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[galaxyproject/galaxy] 8dadfd: remove no-op __init__ methods
by GitHub 15 Sep '15

15 Sep '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 8dadfdcaa0492bce485fb786aed0d29243356258 https://github.com/galaxyproject/galaxy/commit/8dadfdcaa0492bce485fb786aed0… Author: Michael R. Crusoe <crusoe(a)ucdavis.edu> Date: 2015-09-14 (Mon, 14 Sep 2015) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- remove no-op __init__ methods Commit: 1ea1da02291d3d9abbec32a09d63a16ddcef1084 https://github.com/galaxyproject/galaxy/commit/1ea1da02291d3d9abbec32a09d63… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2015-09-15 (Tue, 15 Sep 2015) Changed paths: M lib/galaxy/datatypes/binary.py Log Message: ----------- Merge pull request #729 from mr-c/drop-noop-init remove no-op __init__ methods from lib/galaxy/datatypes/binary.py Compare: https://github.com/galaxyproject/galaxy/compare/34165913ba1e...1ea1da02291d

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[galaxyproject/galaxy] 471664: Merge "Issues" and "Galaxy Development" from READM...
by GitHub 14 Sep '15

14 Sep '15

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 471664c2692315b6699c586efccb6c7522fd6b56 https://github.com/galaxyproject/galaxy/commit/471664c2692315b6699c586efccb… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-09-07 (Mon, 07 Sep 2015) Changed paths: M CONTRIBUTING.md M README.rst Log Message: ----------- Merge "Issues" and "Galaxy Development" from README.rst in CONTRIBUTING.md . Commit: 3f40b7ca8f41403cc00e9fbbc88d8b48b6be6259 https://github.com/galaxyproject/galaxy/commit/3f40b7ca8f41403cc00e9fbbc88d… Author: Nicola Soranzo <nicola.soranzo(a)tgac.ac.uk> Date: 2015-09-07 (Mon, 07 Sep 2015) Changed paths: M CONTRIBUTING.md M doc/source/project/organization.rst Log Message: ----------- Move "Handling Pull Requests" from CONTRIBUTING.md to organization.rst . Commit: 34165913ba1e70ee72db363aeea74cc1824301ec https://github.com/galaxyproject/galaxy/commit/34165913ba1e70ee72db363aeea7… Author: Eric Rasche <rasche.eric(a)gmail.com> Date: 2015-09-14 (Mon, 14 Sep 2015) Changed paths: M CONTRIBUTING.md M README.rst M doc/source/project/organization.rst Log Message: ----------- Merge pull request #702 from nsoranzo/readme_contributing [PROCEDURES] Reorganize content Compare: https://github.com/galaxyproject/galaxy/compare/08668104e5aa...34165913ba1e

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