- galaxy-dev - lists.galaxyproject.org

No zebrafish Zv9 build
by Smith, Tiffany L 29 Aug '13

29 Aug '13

I cannot work with Zv9 data because galaxy does not seem to support it. Can you please add Zv9/danRer7 to the database/build list? Tiffany Smith

2 1

Re: [galaxy-dev] adding new genome to local galaxy instance
by Ricardo Perez 29 Aug '13

29 Aug '13

>Hello, > >I am slightly confused with adding a new genome to my local Galaxy >instance, I am using the recent default branch 10411:c42567f43aa7 >(following the documentation at >http://wiki.galaxyproject.org/Admin/Data%20Integration) > >I have edited the ~/galaxy-dist/tool-data/all_fasta.loc to add new >Arabidopsis genome and updated >~/galaxy-dist/tool-data/shared/ucsc/builds.txt, when I restarted my local >instance, I am not finding the newly added genome in database. > >any idea what is going wrong here ? > >thanks, >--/Vipin Dear Vipin, Have you restarted your galaxy server? You need to restart so galaxy's can be updated. --Ricardo Perez

1 0

Local Instance and current website are not the same
by Tevfik Hamdi Kitapci 29 Aug '13

29 Aug '13

Hi, I installed a local instance of galaxy browser on my local machine using the steps in: http://wiki.galaxyproject.org/Admin/Get%20Galaxy I tried both the default (hg update default) and stable versions (hg update stable) but the current website has different features on the left panel then the local instance that I downloaded. Specifically I want to use the SnpEff feature under the NGS toolbox Beta on the left panel of the website. But I can't find this feature on the local instance is there anyway to install a local instance of the current version of the website? Thanks Best Regards Hamdi Kitapci

3 2

Patch for RPy for R 3.0.1
by Guest, Simon 29 Aug '13

29 Aug '13

Just catching up with the galaxy-dev mailing list, and found some remarks about RPy not working with R 3.0. If that's bugging you, you may be interested in my patches for RPy-1.0.3a, which enable it to work with R 3.0.1 (and probably 3.0.0, but we've moved on from that here). Attached, in case it helps someone. cheers, Simon PS: Anyone on EL6 could just install the python-rpy package from the AgResearch repo, http://rpm.agresearch.co.nz/ ;-) ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. =======================================================================

1 0

tool not runing in workflow
by Berner, Thomas 27 Aug '13

27 Aug '13

Hey guys, we installed and used a tool of the mothur_toolsuite in our local galaxy instance named "get.otulist", but if we want to integrate it into a workflow (extract from history) we get the following error for the next step: "Error due to input mapping of 'Join two datasets' in '__new_primary_file_logfile|0.03.otu__'. A common cause of this is conditional outputs that cannot be determined until runtime, please review your workflow." In the workflow editor only the *.html file is displayed as output but not the tabular file which is generated by the tool normally. There should be an output (tabular) which we want to join with another one, but this doesn't work in the workflow. Can somebody give me a hint for this? Greetings, Thomas

2 2

Connecting to new Galaxy Cloudman by FTP
by Mohammad Heydarian 27 Aug '13

27 Aug '13

Hi, I am having trouble setting up a FTP connection with the recently released version of Galaxy Cloudman (ami-118bfc78). I have instantiated the new version of Galaxy Cloudman with CloudLaunch<http://usegalaxy.org/cloudlaunch> and also through the AWS EC2 wizard (using the same security group settings as the previous versions) and neither instance will connect to my FTP connection. Has anyone else had this problem? Does anyone know what is preventing the FTP connection? Any help would be greatly appreciated. Cheers, Mo Heydarian

4 4

Cloudman database issue (?)
by Mohammad Heydarian 27 Aug '13

27 Aug '13

Hello, I found a couple of issues in using the latest version of Cloudman (revision:10201:ebe87051fadf"). The "Extract Genomic DNA" tool returns an error: "No sequences are available for 'mm9', request them by reporting this error." Upon trying to report the error in Galaxy (on the page that comes up when you click the bug icon) I get the error: "Mail is not configured for this galaxy instance" Any help on fixing the "Extract Genomic DNA" tool would be great. Thanks. Cheers, Mo Heydarian

3 2

Galaxy CloudMan release
by Enis Afgan 27 Aug '13

27 Aug '13

*Last night, we released an update to Galaxy CloudMan.* CloudMan offers an easy way to get a personal and completely functional instance of Galaxy in the cloud in just a few minutes, without any manual configuration. *IMPORTANT - please read* Any new cluster will automatically start using this version of CloudMan. Existing clusters will be given an option to do an automatic update once the main interface page is refreshed. Note that this upgrade is a major version upgrade and thus the migration is rather complicated. The migration process has been automated but will take a little while to complete. If you have made customizations to your cluster in terms of adding file systems, upgrading the database, or similar, we do not recommend you perform the upgrade. Note that this upgrade comes with (and requires) a new AMI (ami-118bfc78), which will be automatically used if starting an instance via CloudLaunch <http://usegalaxy.org/cloudlaunch>. *This update brings a large number of updates and new features, the most prominent ones being:* - Unification of *galaxyTools* and *galaxyData* file systems into a single * galaxy* filesystem. This change makes it possible to utilize the Galaxy Tool Shed when installing tools into Galaxy. - Added initial support for Hadoop-type workloads - Added initial support for cluster federation via HTCondor - Added a new file system service for instance's transient storage, allowing it to be used across the cluster over NFS - Added a service for Galaxy Reports webapp - Added optional Loggly (loggly.com) based off-site logging support - Added tags to all resources utilized by CloudMan For more details on the new features, see the the CHANGELOG<https://bitbucket.org/galaxy/cloudman/src/tip/CHANGELOG.md?at=default>and for even more details see, all of 291 commit messages<https://bitbucket.org/galaxy/cloudman/commits/all?search=35baec1%3A8bbae3f> from 7 contributors. Enjoy and please let us know what you think, Enis P.S. We also now have a logo for CloudMan [image: Inline image 2]

3 5

RuntimeError: maximum recursion depth exceeded while calling a Python object
by Christian Dreischer 27 Aug '13

27 Aug '13

Hi, I tried to visualize a BAM file with Trackster. After adding a custom genome build, I always get an error message when Galaxy needs to access http://127.0.0.1:8081/user/dbkeys: Internal Server Error Galaxy was unable to sucessfully complete your request URL: http://127.0.0.1:8081/user/dbkeys Module galaxy.web.framework.middleware.error:149 in __call__ >> app_iter = self.application(environ, sr_checker) Module paste.recursive:84 in __call__ >> return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ >> return self.application(environ, start_response) Module galaxy.web.framework.base:132 in __call__ >> return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:190 in handle_request >> body = method( trans, **kwargs ) Module galaxy.web.framework:98 in decorator >> return func( self, trans, *args, **kwargs ) Module galaxy.webapps.galaxy.controllers.user:1334 in dbkeys >> len_dataset = fasta_dataset.get_converted_dataset( trans, "len" ) Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:216 in execute >> chrom_info = build_fasta_dataset.get_converted_dataset( trans, 'len' ).file_name Module galaxy.model:1340 in get_converted_dataset >> new_dataset = self.datatype.convert_dataset( trans, self, target_ext, return_output=True, visible=False, deps=deps, set_output_history=False ).values()[0] Module galaxy.datatypes.data:488 in convert_dataset >> converted_dataset = converter.execute( trans, incoming=params, set_output_hid=visible, set_output_history=set_output_history)[1] Module galaxy.tools:2275 in execute >> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs ) Module galaxy.tools.actions:204 in execute >> db_dataset = trans.db_dataset_for( input_dbkey ) Module galaxy.web.framework:1082 in db_dataset_for >> for ds in datasets: Module sqlalchemy.orm.query:2227 in __iter__ >> return self._execute_and_instances(context) Module sqlalchemy.orm.query:2242 in _execute_and_instances >> result = conn.execute(querycontext.statement, self._params) Module sqlalchemy.engine.base:1449 in execute >> params) Module sqlalchemy.engine.base:1576 in _execute_clauseelement >> inline=len(distilled_params) > 1) Module sqlalchemy.sql.expression:1778 in compile Module sqlalchemy.sql.expression:1784 in _compiler Module sqlalchemy.sql.compiler:276 in __init__ Module sqlalchemy.engine.base:705 in __init__ >> self.string = self.process(self.statement) Module sqlalchemy.engine.base:724 in process >> return obj._compiler_dispatch(self, **kwargs) Module sqlalchemy.sql.visitors:72 in _compiler_dispatch Module sqlalchemy.sql.compiler:997 in visit_select Module sqlalchemy.sql.visitors:72 in _compiler_dispatch Module sqlalchemy.sql.compiler:498 in visit_clauselist Module sqlalchemy.sql.compiler:496 in <genexpr> Module sqlalchemy.sql.compiler:498 in <genexpr> Module sqlalchemy.sql.visitors:72 in _compiler_dispatch Module sqlalchemy.sql.compiler:618 in visit_binary Module sqlalchemy.sql.compiler:663 in _operator_dispatch Module sqlalchemy.sql.compiler:617 in <lambda> Module sqlalchemy.sql.visitors:72 in _compiler_dispatch Module sqlalchemy.sql.compiler:679 in visit_bindparam Module sqlalchemy.sql.compiler:743 in _truncate_bindparam Module sqlalchemy.sql.compiler:754 in _truncated_identifier Module sqlalchemy.sql.expression:1325 in apply_map Module sqlalchemy.util._collections:572 in __missing__ Module sqlalchemy.sql.compiler:773 in _process_anon RuntimeError: maximum recursion depth exceeded while calling a Python object Do you have an idea what causes this error? Is there a way to purge the dbkeys database? Thank you Christian

3 3

Select multiple and conditional
by Kahlke Tim 27 Aug '13

27 Aug '13

Hei, Is it possible to use a <select multiple="True"> for a conditional? I'm trying to use it for checkboxes which by default have to have multiple set. But as soon as I put the multiple-tag in I get an 'no case matched' exception (see example below). Any suggestions? Tim Example (working) <conditional name="c1"> <param type="select" name="dbt" label="Db tools"> <option value="blast">Blast</option> <option value="fasta">Fasta</option> </param> <when value="blast"> ... </when> </conditional> Example (exception) <conditional name="c1"> <param type="select" name="dbt" label="Db tools" multiple="True"> <option value="blast">Blast</option> <option value="fasta">Fasta</option> </param> <when value="blast"> ... </when> </conditional> => Exception: ('No class matched value:' , 'c1' , None)

2 1