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[hg] galaxy 2712: Forgot Ross' tools
by Greg Von Kuster 21 Sep '09

21 Sep '09

details: http://www.bx.psu.edu/hg/galaxy/rev/c1e0a15b5cd5 changeset: 2712:c1e0a15b5cd5 user: Anton Nekrutenko <anton(a)bx.psu.edu> date: Fri Sep 18 10:29:34 2009 -0400 description: Forgot Ross' tools 1 file(s) affected in this change: tool_conf.xml.sample diffs (102 lines): diff -r 8d3037d55621 -r c1e0a15b5cd5 tool_conf.xml.sample --- a/tool_conf.xml.sample Fri Sep 18 10:27:03 2009 -0400 +++ b/tool_conf.xml.sample Fri Sep 18 10:29:34 2009 -0400 @@ -209,6 +209,25 @@ <tool file="samtools/sam_pileup.xml" /> <tool file="samtools/pileup_parser.xml" /> </section> + <section name="Rg Data" id="rgData1"> + <tool file="rgenetics/rgenetics_import.xml"/> + <tool file="rgenetics/rgLpedPbed.xml"/> + <tool file="rgenetics/rgClean.xml"/> + <tool file="rgenetics/rgQC.xml"/> + </section> + <section name="Rg Simulate" id="rgSim1"> + <tool file="rgenetics/rgfakePhe.xml"/> + </section> + <section name="Rg Visualise" id="rgVis1"> + <tool file="rgenetics/rgQC.xml"/> + <tool file="rgenetics/rgEigPCA2.xml"/> + <tool file="rgenetics/rgQQ.xml"/> + </section> + <section name="Rg Model Data" id="rgModel1"> + <tool file="rgenetics/rgGLM.xml"/> + <tool file="rgenetics/rgCaCo.xml"/> + <tool file="rgenetics/rgTDT.xml"/> + </section>  -======= - --> - <section name="SOLiD Data Analysis" id="solid_tools"> - <tool file="solid_tools/solid_qual_stats.xml" /> - <tool file="solid_tools/solid_qual_boxplot.xml" /> - <tool file="solid_tools/maq_cs_wrapper.xml" /> - </section> - <section name="FASTA manipulation" id="fasta_manipulation"> - <tool file="fasta_tools/fasta_compute_length.xml" /> - <tool file="fasta_tools/fasta_filter_by_length.xml" /> - <tool file="fasta_tools/fasta_concatenate_by_species.xml" /> - <tool file="fasta_tools/fasta_to_tabular.xml" /> - <tool file="fasta_tools/tabular_to_fasta.xml" /> - </section> - <section name="FASTA/Q Information" id="cshl_library_information"> - <tool file="fastx_toolkit/fastx_quality_statistics.xml" /> - <tool file="fastx_toolkit/fastq_quality_boxplot.xml" /> - <tool file="fastx_toolkit/fastx_nucleotides_distribution.xml" /> - <tool file="fastx_toolkit/fasta_clipping_histogram.xml" /> - </section> - - <section name="FASTA/Q Preprocessing" id="cshl_fastx_manipulation"> - <tool file="fastx_toolkit/fastq_to_fasta.xml" /> - <tool file="fastx_toolkit/fastq_quality_converter.xml" /> - <tool file="fastx_toolkit/fastx_clipper.xml" /> - <tool file="fastx_toolkit/fastx_trimmer.xml" /> - <tool file="fastx_toolkit/fastx_renamer.xml" /> - <tool file="fastx_toolkit/fastx_reverse_complement.xml" /> - <tool file="fastx_toolkit/fasta_formatter.xml" /> - <tool file="fastx_toolkit/fasta_nucleotide_changer.xml" /> - <tool file="fastx_toolkit/fastx_artifacts_filter.xml" /> - <tool file="fastx_toolkit/fastq_quality_filter.xml" /> - <tool file="fastx_toolkit/fastx_collapser.xml" /> -  - </section> - <section name="Short Read QC and Manipulation" id="short_read_analysis"> - <tool file="metag_tools/short_reads_figure_score.xml" /> - <tool file="metag_tools/short_reads_figure_high_quality_length.xml" /> - <tool file="metag_tools/short_reads_trim_seq.xml" /> - <tool file="metag_tools/blat_coverage_report.xml" /> - <tool file="metag_tools/split_paired_reads.xml" /> - </section> - <section name="Short Read Mapping" id="solexa_tools"> - <tool file="metag_tools/shrimp_color_wrapper.xml" /> - <tool file="metag_tools/shrimp_wrapper.xml" /> - <tool file="sr_mapping/lastz_wrapper.xml" /> - <tool file="metag_tools/megablast_wrapper.xml" /> - <tool file="metag_tools/megablast_xml_parser.xml" /> - <tool file="metag_tools/blat_wrapper.xml" /> - <tool file="metag_tools/mapping_to_ucsc.xml" /> - <tool file="sr_mapping/bowtie_wrapper.xml" /> - <tool file="sr_mapping/bwa_wrapper.xml" /> - </section> - <section name="Tracks" id="tracks"> - <tool file="visualization/genetrack.xml" /> - </section> - <section name="SAM Tools" id="samtools"> - <tool file="samtools/sam_bitwise_flag_filter.xml" /> - <tool file="samtools/sam2interval.xml" /> - <tool file="samtools/sam_to_bam.xml" /> - <tool file="samtools/sam_merge.xml" /> - <tool file="samtools/sam_pileup.xml" /> - <tool file="samtools/pileup_parser.xml" /> - <tool file="samtools/pileup_interval.xml" /> - </section> ->>>>>>> other </toolbox>

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[hg] galaxy 2707: Two fixes - functional tests should pass.
by Greg Von Kuster 21 Sep '09

21 Sep '09

details: http://www.bx.psu.edu/hg/galaxy/rev/bac909f808c2 changeset: 2707:bac909f808c2 user: Greg Von Kuster <greg(a)bx.psu.edu> date: Thu Sep 17 09:08:37 2009 -0400 description: Two fixes - functional tests should pass. 3 file(s) affected in this change: lib/galaxy/web/controllers/admin.py lib/galaxy/web/controllers/user.py templates/admin/user/grid.mako diffs (39 lines): diff -r a9c4d314ac89 -r bac909f808c2 lib/galaxy/web/controllers/admin.py --- a/lib/galaxy/web/controllers/admin.py Wed Sep 16 16:00:09 2009 -0400 +++ b/lib/galaxy/web/controllers/admin.py Thu Sep 17 09:08:37 2009 -0400 @@ -539,8 +539,8 @@ message = 'Enter a real email address' elif len( email) > 255: message = 'Email address exceeds maximum allowable length' - elif trans.app.model.User.filter( trans.app.model.User.table.c.email==email ).first(): - message = 'A user with that email already exists' + elif trans.app.model.User.filter_by( email=email ).all(): + message = 'User with that email already exists' elif len( password ) < 6: message = 'Use a password of at least 6 characters' elif password != confirm: diff -r a9c4d314ac89 -r bac909f808c2 lib/galaxy/web/controllers/user.py --- a/lib/galaxy/web/controllers/user.py Wed Sep 16 16:00:09 2009 -0400 +++ b/lib/galaxy/web/controllers/user.py Thu Sep 17 09:08:37 2009 -0400 @@ -177,8 +177,7 @@ email_error = "Please enter a real email address" elif len( email ) > 255: email_error = "Email address exceeds maximum allowable length" - elif trans.app.model.User.filter( and_( trans.app.model.User.table.c.email==email, - trans.app.model.User.table.c.deleted==False ) ).first(): + elif trans.app.model.User.filter_by( email=email ).all(): email_error = "User with that email already exists" elif len( password ) < 6: password_error = "Please use a password of at least 6 characters" diff -r a9c4d314ac89 -r bac909f808c2 templates/admin/user/grid.mako --- a/templates/admin/user/grid.mako Wed Sep 16 16:00:09 2009 -0400 +++ b/templates/admin/user/grid.mako Thu Sep 17 09:08:37 2009 -0400 @@ -95,7 +95,7 @@ No users were returned for the current query. Click the Show all users button or a letter below. %endif: <% - letters = ['A','B','C','D','E','F','G','H','I','J','K','L','M','N','O','P','Q','R','S','T','U','V','W','X','Y','Z', '0'] + letters = ['A','B','C','D','E','F','G','H','I','J','K','L','M','N','O','P','Q','R','S','T','U','V','W','X','Y','Z'] %> <div class="toolFormBody"> <div class="form-row">

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[hg] galaxy 2706: Added sam2interval converter
by Greg Von Kuster 21 Sep '09

21 Sep '09

details: http://www.bx.psu.edu/hg/galaxy/rev/a9c4d314ac89 changeset: 2706:a9c4d314ac89 user: Anton Nekrutenko <anton(a)bx.psu.edu> date: Wed Sep 16 16:00:09 2009 -0400 description: Added sam2interval converter 6 file(s) affected in this change: test-data/sam2interval_noprintAll.dat test-data/sam2interval_printAll.dat test-data/sam_bioinf_example.sam tool_conf.xml.sample tools/samtools/sam2interval.py tools/samtools/sam2interval.xml diffs (218 lines): diff -r e2d37ea1a436 -r a9c4d314ac89 test-data/sam2interval_noprintAll.dat --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sam2interval_noprintAll.dat Wed Sep 16 16:00:09 2009 -0400 @@ -0,0 +1,6 @@ +ref 6 22 + +ref 8 19 + +ref 8 14 + +ref 15 40 + +ref 28 33 - +ref 36 45 - diff -r e2d37ea1a436 -r a9c4d314ac89 test-data/sam2interval_printAll.dat --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sam2interval_printAll.dat Wed Sep 16 16:00:09 2009 -0400 @@ -0,0 +1,6 @@ +ref 6 22 + r001 163 ref 7 30 8M2I4M1D3M = 37 39 TTAGATAAAGGATACTA * +ref 8 19 + r002 0 ref 9 30 3S6M1P1I4M * 0 0 AAAAGATAAGGATA * +ref 8 14 + r003 0 ref 9 30 5H6M * 0 0 AGCTAA * NM:i:1 +ref 15 40 + r004 0 ref 16 30 6M14N5M * 0 0 ATAGCTTCAGC * +ref 28 33 - r003 16 ref 29 30 6H5M * 0 0 TAGGC * NM:i:0 +ref 36 45 - r001 83 ref 37 30 9M = 7 -39 CAGCGCCAT * diff -r e2d37ea1a436 -r a9c4d314ac89 test-data/sam_bioinf_example.sam --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sam_bioinf_example.sam Wed Sep 16 16:00:09 2009 -0400 @@ -0,0 +1,6 @@ +r001 163 ref 7 30 8M2I4M1D3M = 37 39 TTAGATAAAGGATACTA * +r002 0 ref 9 30 3S6M1P1I4M * 0 0 AAAAGATAAGGATA * +r003 0 ref 9 30 5H6M * 0 0 AGCTAA * NM:i:1 +r004 0 ref 16 30 6M14N5M * 0 0 ATAGCTTCAGC * +r003 16 ref 29 30 6H5M * 0 0 TAGGC * NM:i:0 +r001 83 ref 37 30 9M = 7 -39 CAGCGCCAT * diff -r e2d37ea1a436 -r a9c4d314ac89 tool_conf.xml.sample --- a/tool_conf.xml.sample Wed Sep 16 15:30:17 2009 -0400 +++ b/tool_conf.xml.sample Wed Sep 16 16:00:09 2009 -0400 @@ -343,6 +343,7 @@ </section> <section name="SAM Tools" id="samtools"> <tool file="samtools/sam_bitwise_flag_filter.xml" /> + <tool file="samtools/sam2interval.xml" /> <tool file="samtools/sam_to_bam.xml" /> <tool file="samtools/sam_merge.xml" /> <tool file="samtools/sam_pileup.xml" /> diff -r e2d37ea1a436 -r a9c4d314ac89 tools/samtools/sam2interval.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/samtools/sam2interval.py Wed Sep 16 16:00:09 2009 -0400 @@ -0,0 +1,100 @@ +#!/usr/bin/env python + +import sys +import optparse +import re + +def stop_err( msg ): + sys.stderr.write( msg ) + sys.exit() + +def main(): + usage = """%prog [options] + +options (listed below) default to 'None' if omitted + """ + parser = optparse.OptionParser(usage=usage) + + parser.add_option( + '-f','--input_sam_file', + metavar="INPUT_SAM_FILE", + dest='input_sam', + default = False, + help='Name of the SAM file to be filtered. STDIN is default') + + parser.add_option( + '-c','--flag_column', + dest='flag_col', + default = '2', + help='Column containing SAM bitwise flag. 1-based') + + parser.add_option( + '-s','--start_column', + dest='start_col', + default = '4', + help='Column containing position. 1-based') + + parser.add_option( + '-g','--cigar_column', + dest='cigar_col', + default = '6', + help='Column containing CIGAR or extended CIGAR string') + + parser.add_option( + '-r','--ref_column', + dest='ref_col', + default = '3', + help='Column containing name of the refernce sequence coordinate. 1-based') + + parser.add_option( + '-e','--read_column', + dest='read_col', + default = '1', + help='Column containing read name. 1-based') + + parser.add_option( + '-d','--debug', + dest='debug', + action='store_true', + default = False, + help='Print debugging info') + + parser.add_option( + '-p','--print_all', + dest='prt_all', + action='store_true', + default = False, + help='Print coordinates and original SAM?') + + + options, args = parser.parse_args() + + if options.input_sam: + infile = open ( options.input_sam, 'r') + else: + infile = sys.stdin + + cigar = re.compile( '\d+M|\d+N|\d+D|\d+P' ) + + for line in infile: + line = line.rstrip( '\r\n' ) + if line and not line.startswith( '#,@' ): + fields = line.split( '\t' ) + start = int( fields[ int( options.start_col ) - 1 ] ) - 1 + end = 0 + for op in cigar.findall( fields[ int( options.cigar_col) - 1 ] ): + end += int( op[ 0:len( op ) - 1 ] ) + + strand = '+' + if bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0010 ): + strand = '-' + read_name = fields[ int( options.read_col ) - 1 ] + ref_name = fields[ int( options.ref_col ) - 1 ] + + if options.prt_all: + print '%s\t%s\t%s\t%s\t%s' % (ref_name, str(start), str(end+start), strand, line) + else: + print '%s\t%s\t%s\t%s' % (ref_name, str(start), str(end+start), strand) + +if __name__ == "__main__": main() + diff -r e2d37ea1a436 -r a9c4d314ac89 tools/samtools/sam2interval.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/samtools/sam2interval.xml Wed Sep 16 16:00:09 2009 -0400 @@ -0,0 +1,69 @@ +<tool id="sam2interval" name="Convert SAM" version="1.0.0"> + <description>to interval</description> + <command interpreter="python">sam2interval.py --input_sam_file=$input1 $print_all > $out_file1 + </command> + <inputs> + <param format="sam" name="input1" type="data" label="Select dataset to convert"/> + <param name="print_all" type="select" label="Print all?" help="Do you want to retain original SAM fields? See example below."> + <option value="-p">Yes</option> + <option value="">No</option> + </param> + </inputs> + <outputs> + <data format="interval" name="out_file1" /> + </outputs> +<tests> + <test> + <param name="input1" value="sam_bioinf_example.sam" ftype="sam"/> + <param name="flags" value="Read is mapped in a proper pair"/> + <param name="print_all" value="Yes"/> + <output name="out_file1" file="sam2interval_printAll.dat" ftype="interval"/> + </test> + <test> + <param name="input1" value="sam_bioinf_example.sam" ftype="sam"/> + <param name="flags" value="Read is mapped in a proper pair"/> + <param name="print_all" value="No"/> + <output name="out_file1" file="sam2interval_noprintAll.dat" ftype="interval"/> + </test> + +</tests> + <help> + +**What it does** + +Converts positional information from a SAM dataset into interval format with 0-based start and 1-based end. To calculate the end position the tool uses the CIGAR string. + +----- + +**Example** + +Converting the following dataset:: + + r001 163 ref 7 30 8M2I4M1D3M = 37 39 TTAGATAAAGGATACTA * + r002 0 ref 9 30 3S6M1P1I4M * 0 0 AAAAGATAAGGATA * + r003 0 ref 9 30 5H6M * 0 0 AGCTAA * NM:i:1 + r004 0 ref 16 30 6M14N5M * 0 0 ATAGCTTCAGC * + r003 16 ref 29 30 6H5M * 0 0 TAGGC * NM:i:0 + r001 83 ref 37 30 9M = 7 -39 CAGCGCCAT * + +into Interval format will produce the following if *Print all?* is set to **Yes**:: + + ref 6 22 + r001 163 ref 7 30 8M2I4M1D3M = 37 39 TTAGATAAAGGATACTA * + ref 8 19 + r002 0 ref 9 30 3S6M1P1I4M * 0 0 AAAAGATAAGGATA * + ref 8 14 + r003 0 ref 9 30 5H6M * 0 0 AGCTAA * NM:i:1 + ref 15 40 + r004 0 ref 16 30 6M14N5M * 0 0 ATAGCTTCAGC * + ref 28 33 - r003 16 ref 29 30 6H5M * 0 0 TAGGC * NM:i:0 + ref 36 45 - r001 83 ref 37 30 9M = 7 -39 CAGCGCCAT * + +Setting *Print all?* is set to **No** will generate the following:: + + ref 6 22 + r001 + ref 8 19 + r002 + ref 8 14 + r003 + ref 15 40 + r004 + ref 28 33 - r003 + ref 36 45 - r001 + + + </help> +</tool>

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hiring ad
by Kanwei Li 19 Sep '09

19 Sep '09

Could we move the greeting for hiring a developer to a universe.wsgi setting unless it's intentional? -Kanwei

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[hg] galaxy 2704: A tool for filtering SAM datasets on bitwise f...
by Nate Coraor 16 Sep '09

16 Sep '09

details: http://www.bx.psu.edu/hg/galaxy/rev/fc1be2626130 changeset: 2704:fc1be2626130 user: Anton Nekrutenko <anton(a)bx.psu.edu> date: Wed Sep 16 15:19:35 2009 -0400 description: A tool for filtering SAM datasets on bitwise flag. 4 file(s) affected in this change: test-data/sam_bw_filter.sam test-data/sam_bw_filter_0002-yes.sam tools/samtools/sam_bitwise_flag_filter.py tools/samtools/sam_bitwise_flag_filter.xml diffs (1935 lines): diff -r 6555560039d6 -r fc1be2626130 test-data/sam_bw_filter.sam --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sam_bw_filter.sam Wed Sep 16 15:19:35 2009 -0400 @@ -0,0 +1,1000 @@ +HWI-EAS91_1_30788AAXX:1:2:1670:915 99 chr9 58119878 60 36M = 58120234 392 GACCCCTACCCCACCGTGCTCTGGATCTCAGTGTTT IIIIIIIIIIIIIIIIEIIIIIII7IIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1670:915 147 chr9 58120234 60 36M = 58119878 -392 ATGAGTCGAATTCTATTTTCCAAACTGTTAACAAAA IFIIDI;IIICIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:835:1201 83 chr19 7640648 60 36M = 7640277 -407 AATTTTATTAACAAATGCTAAAACTTGGAAGCAACC IIIIIIIIIIIIIIIHIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:835:1201 163 chr19 7640277 60 36M = 7640648 407 TGAGCCGATGACCTTAACCAAGACTTCATCAAGAAG IIIIIIIHIIIIIIIIIII:@I49IGF88:0EI>7- XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:6A21C7 +HWI-EAS91_1_30788AAXX:1:2:1402:1012 99 chr15 67776677 60 36M = 67777024 383 GTCTTAACACAAGAATCATGAGATTGACCTTCATGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1402:1012 147 chr15 67777024 60 36M = 67776677 -383 TTTAGTGTCCATCCCTGGAAGTCTTTGGGTCGTCCA <8/II5I;?CG0IIIFIIIII?IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1428:881 99 chr5 78959538 60 36M = 78959849 347 GGATAAATGGGAATAAGACAATAAAGGACCTAAGAG IIIIIIIIIIIIIIIIIIIIIIII>IIIIIII>IAI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1428:881 147 chr5 78959849 60 36M = 78959538 -347 CCTTTGTAGAGTGGAACGGTCATAGATCTAAGTTTC III>5ICII9I:IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1624:138 99 chr14 19993808 60 36M = 19994089 317 GTGGATTTGGGCCGTAGTACACAAAGGGATCAATTG IIIIIIIIIIIIIIIIIIIIIIIICIIICII9IIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1624:138 147 chr14 19994089 60 36M = 19993808 -317 CCTGGGAAGGCAGAAAGTTATTTGGGAGGTTATTAC >2-IIIIIIIIIIIIIIIII3IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:600:851 83 chr15 52551374 60 36M = 52550994 -416 GGAATCTTCTCAGACTTACCTTACCCATTTTCAATC IEEIIIIII?8IIIIIIIII4I;IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:600:851 163 chr15 52550994 60 36M = 52551374 416 TCCACCATCCCTGGGTCCCTGAATGGGCCTGAGTCT IIIIIIIIIIII/II+I5.II.A2D%0A*I15A2=I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1189:764 83 chr3 50738340 60 36M = 50737960 -416 CACTAGCTGGCAAAAAAATAGGAACCTCAGTCATAC II7>IIGIII<IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1189:764 163 chr3 50737960 60 36M = 50738340 416 AATAGCTACTGTGTCAGATACTAATTCTGTTCAATT IIIIIIIIIIIIIII:III7HD58IICC9AI?+2IF XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:737:1501 81 chrM 933 37 36M chr1 21812681 0 GTCACCCTACTTAAATATCACAAATCATAACATAAC 5D+I.,'@%$IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:8C27 +HWI-EAS91_1_30788AAXX:1:2:737:1501 161 chr1 21812681 0 36M chrM 933 0 AAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAG IIIIIIIIIIIIII;H(a)II9-*;5II482$$-6.35 XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:535:15 69 * 0 0 * * 0 0 GNNNNNNCTGTAAACTTCNNTNNAAAGTNNNNANAA I""""""IIIIIIIIIII""I""II9II""""I"II +HWI-EAS91_1_30788AAXX:1:2:535:15 133 * 0 0 * * 0 0 NNNNNNATCTNNNNNNNNTAGATGTATACTNNTANN """"""IIII""""""""IGI8IIIHI7<I""I/"" +HWI-EAS91_1_30788AAXX:1:2:1713:538 69 chrUn 67420542 0 36M = 67420542 0 GCATGCCCGACAGGTGTTTCTGGACTTTCCGCCACG IIIIIIIIIIIIIIIIIIIIII=8IIIIIIIII3II +HWI-EAS91_1_30788AAXX:1:2:1713:538 137 chrUn 67420542 0 36M = 67420542 0 TGCCTGAGATGCCGGAACCACACCCCGAACAGACCG IIIIIIIIIIIIIIIIIII=IIIIII=&9I/I(III XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:693 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:984:1321 83 chr22 20811874 60 36M = 20811543 -367 AAGCGCAGCAATTCCACTGTCTGCCTCAGAAGACAC (I5I='IIIIIIHIIII@IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0C35 +HWI-EAS91_1_30788AAXX:1:2:984:1321 163 chr22 20811543 60 36M = 20811874 367 GCCTTCTTCTGTTCCCCCTCCCTTCCCTGAATCGGG IIIIIIIIIIIIIIIIIIIIIIIIIIII/A2>A5(0 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:959:227 99 chr2 101947377 60 36M = 101947673 332 GCACAGATGTCAGCTCAGCGCAAACCTTCCTCAGCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:959:227 147 chr2 101947673 60 36M = 101947377 -332 CCCGTTCCCGACTTGAGCCCCTTTGTTACCGTAATC II>I@GIIIIHIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:863:1159 99 chr20 16056387 60 36M = 16056736 385 GAACATACAAGTCTCCAACAGGTCCTTATTGTCAAA IIIIIIIIIIIIIIIIIIIIII6IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:863:1159 147 chr20 16056736 60 36M = 16056387 -385 ATCTCATGAACATGGCTTTGCATTTCTAGCTTCCAG IIIGDIIIIFII1ICIIIIIIIIGIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1682:968 65 chrUn 106473006 0 36M = 100435643 -6037363 GCCGAGCACGCCGGAGCCACCTGTTCGACTCGCTGG IIIIIIIIIIIIIIIIII;IIIIIII:IIIIHIIA5 XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1053 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1682:968 129 chrUn 100435643 0 36M = 106473006 6037363 TTGCGTATGCCCAACAGGTGATACCGGACTGTCCGC IIIIIIIIIIIIIIIIIICI4IIII?I6BF%?I?<@ XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:1099 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:992:786 113 chrUn 95541255 0 36M = 71970516 -23570739 TTACAAAGGCATGTGAAACGCAGTTTCTTTGCAGGC F;<IIIIIII%IIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:41 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:992:786 177 chrUn 71970516 0 36M = 95541255 23570739 GTGGGGCCCAACTCGCCCTTTGGAAAGAAGCCTGCA I)III8*/0II53II.B'?I9IIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:31867 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1096:438 99 chr23 12570811 60 36M = 12571094 319 GTTGTTCATGTTGTTATAGTGTTATGGTGATTGCAT IIIIIIIIIIIIIIIIIIIIIIIIIE?IIIII&;7' XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:35G0 +HWI-EAS91_1_30788AAXX:1:2:1096:438 147 chr23 12571094 60 36M = 12570811 -319 ACAGAGATCCAGGAGCAACCACCTGATCTCCAGGTA @@I@III<IIIIIIIIII;IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1430:987 83 chrUn 49157387 60 36M = 49157036 -387 TTGTAAGATACACTTTTCCCCCCACATTCTATCATC IHFEIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1430:987 163 chrUn 49157036 60 36M = 49157387 387 TACAAAGGATTTCCCAGTCTATAAAGCATTCTAGGG IIIIIIIIIIIIIIIAIIIIII=@9BG:IIDI.8/E XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1147:736 99 chr1 112740356 60 36M = 112740695 375 GACACTCAAAGAATTTCTCAATTTTATGATTTACTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII5 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1147:736 147 chr1 112740695 60 36M = 112740356 -375 TTTTAGTTTTGTTTCAGCACACTTTTTTTTTGGATT 6I=I=IBBC@87IHIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:994:293 99 chr27 4817510 60 36M = 4817805 331 GAAGTTAAATTATTCTCTGAAGTCACAGGAGTCGTC IIIIIIIIIIIIIIIIIIIIIIIIIIIBIIDII3II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:994:293 147 chr27 4817805 60 36M = 4817510 -331 ACCTCAGTCTTCCATGGCCCCCACCACATTTATTGA 27AF/I<;DI>HII2III'IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1168:628 99 chr4 27471068 60 36M = 27471384 352 GTCCCCATCCTTGTTTTCTCTACTATTCTTGTCTCT IIIIIIIIIIIIIIIIIIIIIDIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1168:628 147 chr4 27471384 60 36M = 27471068 -352 ATGGATTCTTATCCTTCCTCCTTGTATATAATGTAT I82III=IIIIDIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1549:1237 83 chr11 10358091 60 36M = 10357735 -392 CTAATGAAAAACATGGAAAAGAAAGAAAAACAGTTC 9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1549:1237 163 chr11 10357735 60 36M = 10358091 392 TAACTCCAGGAGATTATAACCAATTTCTTTCCCAAA IIIIIIIIIIIIIIIIIIIIII5IIIIIIIIII1H6 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1458:1008 81 chrUn 63223541 0 36M = 68294560 5070983 ACTCCGGTATCACCTGCCGGGCATGCCGGAACCACC .I1I9II(a)I.I<II+IIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:793 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1458:1008 161 chrUn 68294560 0 36M = 63223541 -5070983 TGCCAGAGAATCCGGAAGCACCAGCTGAGCATGCCT IIIIIIIIIIIIIIIIIHDEIA0IIIB6II2+D@=% XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:10 X1:i:921 XM:i:1 XO:i:0 XG:i:0 MD:Z:10G25 +HWI-EAS91_1_30788AAXX:1:2:1578:679 83 chr11 55516487 60 36M = 55516099 -424 TGGCATTAAATATGAGATTGAAGTTTTAACTGTCAC 3IIIII=III9IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1578:679 163 chr11 55516099 60 36M = 55516487 424 ATATTCTTTCATAATAAACTGGCAATCTGGTAAGTA IIIIIIIIIIIIIIIIIIAIIIIFII)I:G?III5I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:938:810 83 chr16 21308291 60 36M = 21307938 -389 CACATGACCAGGCTTGTTCAATCTGATCATTCCATC II<IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:23A12 +HWI-EAS91_1_30788AAXX:1:2:938:810 163 chr16 21307938 60 36M = 21308291 389 TAATGCTTGCAGCAACCCTGGGAAGGTTATTATCCA IIIIIIIIIIIIIIIIIIIIII6DIIIIIII8I9@& XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:605:679 83 chr9 45603812 60 36M = 45603475 -373 TTTTCTCCCCTCTCCTTATTCACCCCATTTTTTTAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:605:679 163 chr9 45603475 60 36M = 45603812 373 AATTGCGCGGTGTCTTTCTGTGAACATAGAGTAGGC IIIII,IIIIIIIIIIIIIIIIIHF9I8=5(F;B3, XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5G30 +HWI-EAS91_1_30788AAXX:1:2:1711:1368 83 chr14 23898303 60 36M = 23897924 -415 ACTCAGGTCCTCTCCCTTACAGTCTCCCGTCATCAC II@II:?DII5IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1711:1368 163 chr14 23897924 60 36M = 23898303 415 GGTTTGCTTTGGGCAAGGCTAAGTGTGCAAGGACAC IIIIIIIIIIIIIAI.I?@IIAICI?IIII,I:88B XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:679:1132 83 chr8 91991535 60 36M = 91991179 -392 GTTAAACAGACGATTGTCCTGTCTCTGTTTAAACTC .@A&IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0A2C32 +HWI-EAS91_1_30788AAXX:1:2:679:1132 163 chr8 91991179 60 36M = 91991535 392 CCAGGAACAACATGGTCCTGAGTGGAAAGCAGGAAA IIIIIIIIIIICIIIBIIIIIICII?IAID:IIB8= XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:876:1069 83 chr18 15004036 60 36M = 15003687 -385 TTCATGGTCATCAGCATCAGTTACACTATTGATGTC IICIIIIIIIAII?IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:876:1069 163 chr18 15003687 60 36M = 15004036 385 ATCTTCATTTCGTTAGGGAAACTTTTAATCATCCCA IIIIIIIIIIII/IBII)IIIIIIIIIIIICIIBID XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1245:1015 81 chr21 14134908 37 36M = 14134807 -137 TGGCCCTCGTTATTCATGGATTCCATATTTGCAAAC IIICI:FIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1245:1015 161 chr21 14134807 0 36M = 14134908 137 TTCTGTTATTTAAGCCACCCAGCTTGTGGTACTTTT IIIIIIIIIIIIIBIIIIII9IIIIIII3I8IIII( XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:2 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:35G0 +HWI-EAS91_1_30788AAXX:1:2:1327:654 83 chr2 94157304 60 36M = 94156969 -371 CCTTATTTCAGTTCTGCGTGCTTGTTTAAGTTCTAC IIIBIIGIIIIIDIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1327:654 163 chr2 94156969 60 36M = 94157304 371 ACCACCTGGAAGGGCTATAGGAAAGAGTTCAACAGG IIIIIIIIIIIIIIIICI>II3E<I8I6IIHII7HI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1186:417 83 chr7 94241079 60 36M = 94240722 -393 CTCCACACTTAATCTCTCTCATTCTGGACAGACTTC ICIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1186:417 163 chr7 94240722 60 36M = 94241079 393 CTCCAGCATTTTCTGAAGAGGAGCTCAAGAACGCAA IIIIIIIAIIIIIIIIII@IIBIIII97I=IIHE5I XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:33A2 +HWI-EAS91_1_30788AAXX:1:2:1046:1574 99 chr4 21581052 60 36M = 21581406 390 GGAAAACTCAATAAACGATTATAATAGAAACAAGCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1046:1574 147 chr4 21581406 60 36M = 21581052 -390 TGGGCTTATCATTTAGGAGCTCTGAAAAAGGGGAAA 2IEIB1II;IIIC?IIIIID@IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1548:1215 99 chrX 61056203 60 36M = 61056579 412 GGAGGTGCCTCCTTTCCCTCTCCAAACCCCCTCCTT IIIIIIIIIIIIIIIIIIIIIII:AGIIIIIIIII6 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1548:1215 147 chrX 61056579 60 36M = 61056203 -412 ACCACTCAATAACTATGGAACTTGGGCAAATTAGTT B40:I8GIIAI5IIIGIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1220:866 99 chr4 8576382 60 36M = 8576716 370 GGTTTGGTAGCTCACTTTGATTTATTGCTAAATAAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1220:866 147 chr4 8576716 60 36M = 8576382 -370 AGTATTTGACATTGTTTAACTTTCAGCTTCTAATAG IE6I9IAIFIIICIIIIIIIGIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:609:368 99 chr6 69331746 60 36M = 69332001 291 GAAAACAAGAGAGAAAATCCTTAGTAACAGGTGGAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIICIICII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:609:368 147 chr6 69332001 60 36M = 69331746 -291 TAGATAGAAAAACTTACAAATCCCAGGGAAGTATTT IIIIIIIIIIIIIICIIIII<IIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:15C20 +HWI-EAS91_1_30788AAXX:1:2:1631:63 83 chr24 12862480 60 36M = 12862137 -379 AAATCTCAGTGACCCTAAAATCTTTCCCTCATAATC IIIIIDIIIII?IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1631:63 163 chr24 12862137 60 36M = 12862480 379 TAACTCAGGCTCAGGTTTGCTGGTGCACATTTATCT IIIIIIIII$II<IIIIIII.II'IIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9T26 +HWI-EAS91_1_30788AAXX:1:2:849:162 83 chr1 119971050 60 36M = 119970720 -366 CTGCAGGATTGAGCCAAAACTGTGCATGCATTCACC IIIIIIII?IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:849:162 163 chr1 119970720 60 36M = 119971050 366 ATCTCGTGGCTCATCTGGGTTTGGGTTCTGGTTTTG IIIIIIIIIIIIIIIII<ICII+I?IIIIIG8III4 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:827:1141 99 chr15 32000448 60 36M = 32000769 357 GCAGGAAAAATACAAGAGAAAGGGGTGGTCTGGTAG IIIIIIIIIIIIIIIIIIIIIIIIIBIIIIIIIII; XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:827:1141 147 chr15 32000769 60 36M = 32000448 -357 GAGAATCAACTGCATTTTAGACGGTGCTGGGTTTAC II8IIDII=I-IIIEI4III@IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1273:1456 113 chrUn 93905486 0 36M = 115025717 21120231 GGTGTGCTACTTTGCCCTAGAGCTGAAAGGCACAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:26260 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1273:1456 177 chrUn 115025717 0 36M = 93905486 -21120231 AGATGCTGTGGGGCCCAACTCGCCCTTTGGAAAGAA III1I-9I-IIIIIIIII7IIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:32876 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1583:435 83 chr26 30514638 60 36M = 30514314 -360 CTCGTCCCAGGCAGTAGAAGTGACAGGTTCAAAGTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1583:435 163 chr26 30514314 60 36M = 30514638 360 AAATGGTGAATTTTACACTATGTAAGTTATATCTCA IIIIIIIIIIIIIIIIGIIIIII;I7IIFI:IIFH, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1510:1131 83 chr19 29430163 60 36M = 29429839 -360 CCCAAGTAGAGAATTCAGACAGGCAAATACAAAGAC >IIIII>IIIIIIG@IIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1510:1131 163 chr19 29429839 60 36M = 29430163 360 TTCACTCATTCGACAATTGTCAATGGTACCCCTATT IIIIIIIIIIIIIIG7III>IIHIIA53IIII4*EI XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:11A24 +HWI-EAS91_1_30788AAXX:1:2:1089:1022 83 chr19 18406162 60 36M = 18405890 -308 AGGACTAGAGATGCAAGAAGCAGCACCTAACACTTC IIIIIIIIIII;IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1089:1022 163 chr19 18405890 60 36M = 18406162 308 TAAAATAAAATAAAAAATAAATGCTTTTTAAATGAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII@IIID XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1618:729 99 chr7 65638065 60 36M = 65638366 337 GTCATGGAACCTGCAAAATCCTGCAGGATTTGGTGA IIIIIIIIIIIIIIIIIIIIIIIIIIIDIIIII>I; XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1618:729 147 chr7 65638366 60 36M = 65638065 -337 TATATGTCTGTGCTTATGTTCCCTCTCTTGTAGACG IIIIII>H+H?IIIIIIIIFIII?I9IIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1242:1277 113 chrX 5469111 0 36M chr7 72444556 0 AGGGAAACAAAAGAAAAAATAAACAAGTGGGACTTC II>IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:283 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1242:1277 177 chr7 72444556 37 36M chrX 5469111 0 GCCTTTCAGTTCTGTTCCGGTGATCTGTGTGCCTAT IBI7F.IC95EI7I6I?III7IIIIGIIIIIIII@I XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1154:769 83 chr2 91146327 60 36M = 91145957 -406 CTAACTTCAGGTTAGTGACTCTTAGTTTATTTGTTC IIIIIDHIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:1A34 +HWI-EAS91_1_30788AAXX:1:2:1154:769 163 chr2 91145957 60 36M = 91146327 406 GAATGGGCTTGAGATACTCATTATCCTCCGATATAT IIIIIIIIIIIIIIIFIIIFIIEIGFIIII?I3I=I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1435:1979 81 chr9 4542583 37 36M = 4542450 -169 TGATTATTTGAGTTCTATGTCTATGTGCTCACTTCC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1435:1979 161 chr9 4542450 37 36M = 4542583 169 ATTTATTTTACTTTTATTTGGCATAGCTAGTGAAAT IIIIIIIIIIIIIIIIIIII?IIIIIIII*I-8I?I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1079:687 99 chr17 51783267 60 36M = 51783523 292 GGGACATTGAACCTGGACATTAGGTCTGAATGGTGT IIIIIIIIIIIIIIIIIIIIIIII-IIII6III<II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1079:687 147 chr17 51783523 60 36M = 51783267 -292 CTTATCAGTTGGGGGAAAAAAACAAAGATGAACTAC A0&I7&ID1IICIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:29A6 +HWI-EAS91_1_30788AAXX:1:2:498:210 99 chr20 45564137 60 36M = 45564488 387 GTATCCAGCAAAGCCTAGCGGGGTGTACCATCGCTG IIIIIIIIIIIIIIIIIIIIIIIIII>IIIII?IIG XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:498:210 147 chr20 45564488 60 36M = 45564137 -387 CAGTCTGCACAAAAAACAGAACTTCATCTCATGGGG +H:3,4I*I0IIIIIIIIIIIIIFIICIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1466:1315 69 * 0 0 * * 0 0 GAAGGCAGGTGGGCAGATAGACTGATGGTCGGAGAG IIIIIIIIIIIIIIIIIIIIIIII<IIIIIII7I/I +HWI-EAS91_1_30788AAXX:1:2:1466:1315 133 * 0 0 * * 0 0 CATCCATCCCATCATCCATCTGACCATCAATCCATT IIIIIIIIIIIII9IIIGGI@I:II4II<;III*I? +HWI-EAS91_1_30788AAXX:1:2:958:1309 83 chr18 56913664 60 36M = 56913390 -310 TGGGTTTCTTCTCAGTTAACCTGTTTCTAAGGGTGC IIFIIIIIIIIIIIIHIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:958:1309 163 chr18 56913390 60 36M = 56913664 310 CTTACCATTGACATAAATAGTAACAGAACTCCTGTT IIIIIIIIIIIIIIIF8(-EAF@IB83IC9:I:,3< XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17G18 +HWI-EAS91_1_30788AAXX:1:2:1515:950 99 chr3 84883580 60 36M = 84883913 369 GCATTATTCATAGCAGCCAATATATGGAAGAAACTT IIIIIIIIIIIIIIIIIIIIIIIIIIIHIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1515:950 147 chr3 84883913 60 36M = 84883580 -369 GATTAGAGGGCGTTAGGGGAAAGGGGAAGAGTTGGT I;18IIIIIIII:-IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1294:1387 99 chr2 100764844 60 36M = 100765170 362 GGGAAGAAGAAAGGCTCAACCATTCTAGCATCCCAG IIIIIIIIIIIIIIIIIIIIIIIIII?II@IIIICI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1294:1387 147 chr2 100765170 60 36M = 100764844 -362 AAGTTTAAAGGAATATGGAAATGCAAGTCTACTGCA III<DIIIIIIII:IGIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1578:105 99 chr4 10424438 60 36M = 10424812 410 GAGTTCAGAGGCTTCGATCCCAGCTCTGGAAGGATG IIIIIIIIIIIIIIIIIIIII2IIIIIII&3II-II XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:19T16 +HWI-EAS91_1_30788AAXX:1:2:1578:105 147 chr4 10424812 60 36M = 10424438 -410 TAGGGCAATTTAGTGCTCAGAAGGTGGGAAACAAGG 6IIIIIIIEIIIIIIAIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1635:191 81 chr15 41619842 23 36M = 41619557 -321 AGGTTGCTTCCAAGTCTTGGCTGTTGTGAATAATTC IIIIIIICIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:83 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1635:191 161 chr15 41619557 37 36M = 41619842 321 GCCTAATCACCCCTTTCACCCGCTTCCATCCCCACG IIIIIIIIIIIIIIIIIIIIIIIIIII(IIIII5II XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1003:1336 83 chr23 9257139 60 36M = 9256798 -377 AATGTGATATTCATATATAAAAAGGTTTGATGTGGC II?IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10C25 +HWI-EAS91_1_30788AAXX:1:2:1003:1336 163 chr23 9256798 60 36M = 9257139 377 GATACAGGACAACAAGCGTAAACTAGAATTGTCCTC IIIIIIIIIIII:III>I13IAI6.I;I>I1FGD1E XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:862:93 99 chr26 18865331 60 36M = 18865673 378 GAAGTGAAGGATAAGGTGAAGTTGTAAACTGCCTGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:862:93 147 chr26 18865673 60 36M = 18865331 -378 CATGAAAAGCTGTGAAAAGTAACAAGAAAGTATGGC 1I9IIIIIIF4I9IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1216:465 81 chr8 28976950 37 36M = 28976776 -210 GTCATACAACCACCATGTGTATCCAGCCCTGGGAAC 65&I=IGIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1216:465 161 chr8 28976776 23 36M = 28976950 210 TGCCATCTCAGCATGGCTTGATGAGTGGTGCCGTGT IIIIIIIIIIIIIIIIIIII;I89IC1I<18I:4%7 XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:41 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1348:1250 99 chr3 65208819 60 36M = 65209192 409 GTCTCTTCCAGGCAATCTAGGTATTTTTCTAACATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1348:1250 147 chr3 65209192 60 36M = 65208819 -409 GTCATATTGTATTAGGGCCTAACCCTAAAGACCTCA C>BB=I50I7II=IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1508:1116 83 chr7 27480949 60 36M = 27480595 -390 AGTGTGGCTGGAAAGGAGGATGGCTAGGTTGAGAGC II9IIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1508:1116 163 chr7 27480595 60 36M = 27480949 390 AGGCATTGTTCTAAGTGTTAGGAAGGTAGAAGGGAA IIIIIIIIIIIIIIIIIII1I=(a)III.(I9.6II'G XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:921:33 99 chr8 85153436 60 36M = 85153782 382 GATTGAAAGTGTCCTAGAGACTAAATCGAGTTTTTG IIIIIIIIIIIIIIIIIII<IIIFIIII7IIIIIIC XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:14C21 +HWI-EAS91_1_30788AAXX:1:2:921:33 147 chr8 85153782 60 36M = 85153436 -382 GGCTCTGATCTTAATTTTTGCTCCATTAACTTTAAA 7IIAGF;IDIAIII??IIIHIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:899:377 99 chr19 25446520 60 36M = 25446849 365 GAGACTCTTAGAGAGTCTGTAGGTCAGGTTTGCTCA IIIIIIIIIIIIIIIIIIII@IIIIIIIII)IIII0 XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:30G5 +HWI-EAS91_1_30788AAXX:1:2:899:377 147 chr19 25446849 60 36M = 25446520 -365 GCCTCAGGAATCCTGTGCAGAAAAGTGTCCTTAGTA @GIIIIIIII0IIHIII5IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:8G27 +HWI-EAS91_1_30788AAXX:1:2:843:490 83 chr11 34797143 60 36M = 34796802 -377 AATGCTTCCTCATTCATTGACTAAGACCAGTATTCC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:843:490 163 chr11 34796802 60 36M = 34797143 377 CTCATTTAATTCAGTATATAAGGTATTATGCACGTT IIIIIIIIIIIIIIIIIIIIIAI4CIICI5IGI=II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1269:978 99 chr7 60276467 60 36M = 60276819 388 GTCAGAGAGGGAATGGAGAGTCAGGTCATCAAGTTT IIIIIIIIIIIIIIIIIIIIIIIIIII:II*8IIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1269:978 147 chr7 60276819 60 36M = 60276467 -388 AAAAGCAAGAAGTCAAGAATATCTTCAGGTTTTTCC III@A+IIIIIIIIIIIIIIIEIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1512:312 97 chr13 31856432 23 36M = 31856815 419 GAGGTGATAAAGGTTAAATGAGGCCATAAGGGTGGG IIIIIIIIIIIIIIIIIIIIIIIIIIII:IIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:2 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1512:312 145 chr13 31856815 37 36M = 31856432 -419 GGCCTCTGAGGAGGAGAACCAGGAGCTGGAGGATGG IC5E++*IIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1177 99 chr4 79152164 60 36M = 79152494 366 GACTGTTGTGTACCTGAGCCTCTTGGCCATCTAATT IIIIIIIIIIIIIIIIIIIIIIIII:II=III8,II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1177 147 chr4 79152494 60 36M = 79152164 -366 ATATTTTTTTTTAAGATTGACTTCACGGACTTCATC H.92I8I;::5IIIII;IIIIIBIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1500:419 97 chr5 61650894 37 36M = 61651134 276 GTTGCAAATCTGAATGATAGCTTTGGCCGAATGTCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1500:419 145 chr5 61651134 37 36M = 61650894 -276 ATCTCCTTCCATTTGGGATATTTTTTTAAAAACTAT IHIAIICIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1750:1887 99 chrX 76366699 60 36M = 76367056 393 GACTGTATACTTAGTTTTATTTATCATTGTCCTCCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1750:1887 147 chrX 76367056 60 36M = 76366699 -393 GCAGCTCCATTTATGTCTGTTTTATCAATTGAGTTT GDIEI7IGI;IIIIIIIBIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1097:1121 113 chrUn 60570078 0 36M = 95345125 34775047 CAGCATTTGGTATTGGCACGTCTGAGAGGTGGTTCC IIIIIC6EIIIIE@IIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:2 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11T0C23 +HWI-EAS91_1_30788AAXX:1:2:1097:1121 177 chrUn 95345125 0 36M = 60570078 -34775047 GCAGACACTCCGGAATCACCTGACGGGCTGGCTGGA +0IGC2CI*I(a)IIIIGIIII.IIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:634 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1317:1907 81 chr25 25970026 37 36M = 25969879 -183 GATCAAATGAACACGGTGACTGGTGTGTATCTTTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1317:1907 161 chr25 25969879 37 36M = 25970026 183 ATGGGGAAACTGAGGCCTGGAGAGGGAACCACTTGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIHI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1557:699 97 chrUn 28128796 0 36M = 28129144 384 GAGGAAGAGAGGGAAAGGAAAGAATAGGAATAAAAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1557:699 145 chrUn 28129144 23 36M = 28128796 -384 AAAGTGATCTGGAAGAGACTTAAACAGATCATAGCA IIII/I'DI=IIIIIIII>IIIIIII4IIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1533:959 99 chr2 66393107 60 36M = 66393460 389 GGGGAGATTTACACAGCATCTTATCCCTACATAAAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDI@I4I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1533:959 147 chr2 66393460 60 36M = 66393107 -389 ATATCTAGTCCCAAAATATCAAGACTGTGGGGGGGT I1GBI;IICDIGIIII0I8IIIIIIII?IIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1712:1909 83 chr4 59672928 60 36M = 59672561 -403 AATGTGGATCTAGCCATTGCTTCCCTTACCCGTGAC IIAI2III<IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1712:1909 163 chr4 59672561 60 36M = 59672928 403 TGAGGCATAAGTTGAGTAAACAGATGCAAGTGGGTG IIIIIIIIIIIIIIIIIIIIIII?IIEA5IBIIIFI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1145:1955 83 chr6 49524371 60 36M = 49524028 -379 ACATAAATAGCTCTTCATTATTTGAAGATAATTCTC IDIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:4G31 +HWI-EAS91_1_30788AAXX:1:2:1145:1955 163 chr6 49524028 60 36M = 49524371 379 TAAAAGAAAGTCATTTACTGAATTCAACATACTGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIH@I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1045:1305 83 chr5 24857286 60 36M = 24856947 -375 TCGAATCTTTGTCGAGAGCTGAATGGCTATATGTGC >IIIIBI2IHIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1045:1305 163 chr5 24856947 60 36M = 24857286 375 CAGAAGGGAAGAAAGGGTGCAGGATGCTACACAGAG IIII<IIIIIIIIIIIIIIIDII1IIII>G9B2I6I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:676:657 99 chr4 66313600 60 36M = 66313984 420 GTTTAAAAACCTACATTCTGAGGAACTACAAGCTAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:676:657 147 chr4 66313984 60 36M = 66313600 -420 ACGTATCAACTCAGGGGCCATGCGGCCCAACGTGGC .:I3I1IIAI+IIIIIFI;I>IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1537:1422 81 chr8 1675029 37 36M = 1674716 -349 GTCACTGTATCTTTTCTTTTTGTCTCTGTGTTTAGC IHIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:20C15 +HWI-EAS91_1_30788AAXX:1:2:1537:1422 161 chr8 1674716 0 36M = 1675029 349 AGCATCCCCACTGGCTGGCAAGCTGCCCTCTCTGGC III<IIIIIIIIIIIII5=(-4IC-IDI'D?@.&,8 XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:2 X1:i:4 XM:i:1 XO:i:0 XG:i:0 MD:Z:24A11 +HWI-EAS91_1_30788AAXX:1:2:770:11 69 * 0 0 * * 0 0 GNNNNNNAAGNGNGCANNNNNNNNTNAANNNNANNT I""""""III"I"III""""""""I"IA""""1""I +HWI-EAS91_1_30788AAXX:1:2:770:11 133 * 0 0 * * 0 0 NNNNNNNTNNNNNNNNNNNTTGNNANAAGNNNTCNN """""""I"""""""""""III""H"I5I"""II"" +HWI-EAS91_1_30788AAXX:1:2:1669:1456 99 chr3 49913297 37 32M4S = 49913632 371 GTGGGCTTTTCACATATGGCTATTATTATATTTTGG IIIIIIIIIIIIIIIIIIIIIICI+II&I(II2()% XT:A:M NM:i:1 SM:i:37 AM:i:37 XM:i:1 XO:i:0 XG:i:0 MD:Z:9C22 +HWI-EAS91_1_30788AAXX:1:2:1669:1456 147 chr3 49913632 37 36M = 49913297 -371 TGATATCTTTGTCTGGCTTTCGAACCATGGTAATGC 018<<1I21-?3I3III>IBIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:31G4 +HWI-EAS91_1_30788AAXX:1:2:877:503 83 chr4 43276862 60 36M = 43276528 -370 TTTGTCAGGCAGTAAAATACAGTGGTCTCTTTGATC IIGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:877:503 163 chr4 43276528 60 36M = 43276862 370 TTATAGCCAAGGAGCAGGGTAGGAGTCAGTGGATAT IIIIIIIIIIIIIIGAIII1IIIFI@I:II.I4I?I XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:18A17 +HWI-EAS91_1_30788AAXX:1:2:1584:1121 81 chr14 85458174 0 36M = 85457803 -407 TCTCAAGTGCCTTTAATTCAAAATAATCAATATGCC IEAIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:12 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1584:1121 161 chr14 85457803 37 36M = 85458174 407 TAAAAATTAAATGGACGAAGACAGATTAACAGGAGA IIIIIIIIIIIIIIIIIBIIII3IFIIII<II8D4I XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:1G34 +HWI-EAS91_1_30788AAXX:1:2:1073:1549 83 chr26 13342615 60 36M = 13342287 -364 GAAGCTGAGACCAGAAGTTTGAAAAATGTTGACAAC IIIIGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:28A7 +HWI-EAS91_1_30788AAXX:1:2:1073:1549 163 chr26 13342287 60 36M = 13342615 364 GAATAGACACTATTTGTAAAGAAAAAGTATTGACTA IIIIIIIIIIIIIIIIIIIIIAEIIII,9III4BI; XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1732:31 113 chr27 37372826 0 36M chrM 8776 0 GGTAATGTTAGCGGTTAGCCGCACGGCTAGGGCTAC I>HII:9<IIFIIIHIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1732:31 177 chrM 8776 0 36M chr27 37372826 0 AATAGGGCTATTAACCAACATCCTTACCATATATCA #I7><I?@2IBBIIIIIIII8IIIIIIIIIIIIIII XT:A:R NM:i:2 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T14T20 +HWI-EAS91_1_30788AAXX:1:2:1775:1284 97 chrUn 70555432 0 36M = 42147379 -28408017 GTCATCTGGGCCTCGTCCCCGTTGCTGAAGGGGAAG IIIIIIIIIIIIIIIIIIIIIIIIIIIA/IIII93I XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1127 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1775:1284 145 chrUn 42147379 0 36M = 70555432 28408017 AGTGCACAATGGTGGTTGGAAAAAGGCGTGCAGTCT I93C<G6I<0II9IIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:951 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:677:503 99 chr17 22254545 60 36M = 22254840 331 GTTGCATGCTGTATCCTTTTCCATCCCTTCACTTTC IIIIIIIIIIIIIIIIIIIIIIEIIIIIII8IIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:677:503 147 chr17 22254840 60 36M = 22254545 -331 TTTTGGTTCCTATCTCTTAATATTTTGTGTATTTAT I>IICIIIIIFIIIHIIIIIAIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:656:1210 83 chr14 91469947 60 36M = 91469581 -402 AGAGTAAGTGAAACCCAAATAGGCAGAAAAGGAAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:656:1210 163 chr14 91469581 60 36M = 91469947 402 ACAGATTGTAGTTTGGACTATATAACAAATACCAAT IIIIIIIIIIIIIIIIIIIDIEIIII8I?I9>:53< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1612:1385 99 chr10 65547655 60 36M = 65547992 373 GACTATGGGAGGAGGAGAACAGAAGGGAACCAAGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIHIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:35C0 +HWI-EAS91_1_30788AAXX:1:2:1612:1385 147 chr10 65547992 60 36M = 65547655 -373 AAATGTCTTTGAACATCATGGTGCTATTGCAGAATA IIIII6IICIIIIIIHIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1430:1137 113 chrUn 69595353 0 36M = 94746478 25151125 CTGCACAGTGCTCTTACAGCCTACCGGGAACATGTC =7IIDIGII>IGEIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1761 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1430:1137 177 chrUn 94746478 0 36M = 69595353 -25151125 GCTCTAGGGCAAAGTAGCACACCCAGAGCAGAAGTC I1+I-IIIIGIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:26613 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:831:1954 83 chr19 5278641 60 36M = 5278301 -376 TACGCCCTCTCCCTGGGGTGGCCCTCATCTAATGCC IIIIIIIFIEIIIAIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:3A32 +HWI-EAS91_1_30788AAXX:1:2:831:1954 163 chr19 5278301 60 36M = 5278641 376 GTACCATCCAAGATCCTCAAATATTTATGTCTGAGT IIIIIIIIIIIIIIIIIIIIIIIIIIBI6III2I&A XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1458:1304 99 chrX 21922142 60 36M = 21922525 419 GTACTGCTAGCCCCTCTAAATCTACACACTCAAAAT IIIIIIIIIIIIIIIIIICDIIIIIIIIIIIFCIEI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1458:1304 147 chrX 21922525 60 36M = 21922142 -419 TCTGGGGAATTTTGCTCTCAGGGAACATTCAGCAAT 0I-IIIIIIHI;III8I?-IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:1420 97 chrX 78902018 37 36M = 78902137 155 GAGTGCTGGAAAATCATGGTCGATTACCCCTTGTGT IIIIIIII'IIIIIIIIIIIIIGIIIIIIIII'I&I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:1420 145 chrX 78902137 37 36M = 78902018 -155 AAGAATATAACTCTAAACTTAAATTCCAGGCAGAAA IIIII0*III.A'IIII$5IIIIII%IIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C29 +HWI-EAS91_1_30788AAXX:1:2:1440:937 113 chrUn 72169578 0 36M = 76726508 4556930 CTCACCGGTCCCACATGCCGGACGTGCCAAAATCAC A3IGIIIICIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:5 X1:i:3 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1440:937 177 chrUn 76726508 0 36M = 72169578 -4556930 TGGCACGTGGTTCTGGCATGTCCGAGAGGTGGTTCT (:@I*.E;IGC6==IIC-6IDIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:50 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1242:773 83 chr7 68834772 60 36M = 68834448 -360 GTGGGGTTTTTTTGGTTTTCTAAATTTTAATAAAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1242:773 163 chr7 68834448 60 36M = 68834772 360 CCGCCTATAGAGCTCTAATGAGGGGCCGCGTTTAAC IIIIIIIIIIIIIIIIIIII=IIHIIIBIIIII4H= XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:553:1150 99 chrX 83392118 60 36M = 83392432 350 GGAGGAGAGTACACACAGCATGAGCTGGCTCTTACC IIIIIIIIIIIIIIIIIIIIIIGIIIIAIIIAIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:553:1150 147 chrX 83392432 60 36M = 83392118 -350 AGTTAAGACACTCCCTCTTGTCTAGTGGCACTGGAG AI9IIIEHB5IAIIII?I1IIIIII.IIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1656:1012 83 chr16 17381368 60 36M = 17380979 -425 GTTCAAAGATCAGTTTTTAACAATTAATAGGGCTCC IEIIIIIIICIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1656:1012 163 chr16 17380979 60 36M = 17381368 425 CCTGGGTTCAAATTCCAGCTCTGCTATGTGAGCTTG IIIIIIIIIIIIIIIIIBIIIIIII5IIH?IIIII= XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:951 83 chr18 78667252 60 36M = 78666954 -334 GACACTTTTACCTACCTCCATTCATTTTATTCTCAC II+I6IIIII/IFIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:951 163 chr18 78666954 60 36M = 78667252 334 CACTGGGAGCGTCAGGATAGGAAGACTTTTCCAAAA IIIIIIIIIIIIIIII5IHII<II4I=III0I,1@0 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1007:810 99 chr7 35869555 60 36M = 35869883 364 GAATCACAGTGCTGGAATCAACTTCCCCACCAGGGG IIIIIIIIIIIIIIIIIIIIIIIIIIII=II:IDII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1007:810 147 chr7 35869883 60 36M = 35869555 -364 TCCGAAACTCCTTCTTCATAGGTGGGGGTCACCCTT 1;IIIIIIIIII@I:;IIFIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:634:1196 83 chr9 77287671 60 36M = 77287326 -381 AATGGAACAGAGCAGGATGCTGTGAGAGTTTATCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C5C27 +HWI-EAS91_1_30788AAXX:1:2:634:1196 163 chr9 77287326 60 36M = 77287671 381 ATAAATAATAATAAAATAGAATAATTATAATAATAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIHIIE@ XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:961:809 83 chrX 36653305 60 36M = 36652992 -349 GCCAGAAGTGGTGCCTTTCCATGTCACAATGGATGC IABIIIIIEIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:961:809 163 chrX 36652992 60 36M = 36653305 349 CAACTAATTCAACTTATAATTATTCAACTTATTTTT IIIIIIIIIIIIIIIII9IIIIIIIIIIIIEIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:709:665 99 chr28 28945755 60 36M = 28946043 324 GCTTTGTATCAATGCAGGATCCTGGGCATCACTGTG IIIIIIIIIIIIIIIIIIIIIII*00I?IIIII,I, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:709:665 147 chr28 28946043 60 36M = 28945755 -324 TGGAGGAGAGCACTGTCAGCTCTCCTTTCCTGGCCC ,IIII4IIECIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1245 99 chr9 64435894 60 36M = 64436287 429 GCCCCTACTCTGCTGTTTTAAGCCTCGTGCCCTGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFBI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1245 147 chr9 64436287 60 36M = 64435894 -429 AAAAATCATGGAACTACTGGCCTGTGCTCAATTAAC IIIII.5G8IIIII3HIHIIII?IGIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1365:429 81 chr9 35299885 37 36M = 35299763 -158 AAGAATCAAGGCACCTGGGCAACAGGCCCAGCCATC IIIICAIIIIII/II>IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1365:429 161 chr9 35299763 37 36M = 35299885 158 TCAAAGGCTGTAGTTTCTGTTTAGTTCTCTTAGAAG IIIIIIIIIIIIIIIIIIIIIIF5II18III:D3)6 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1299:812 65 chrUn 22399610 23 36M = 35888624 13489014 GATTTCTTAAATGTGACCTGTTTTCAGAGAAATACA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1299:812 129 chrUn 35888624 23 36M = 22399610 -13489014 TTTGTCAATGATGAAGCTAAATTAAATGGTTGAACC IIIIIIIIIIIII;IIIIAGIIIFEIII4>I)3:<I XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1019:1317 113 chrUn 113505236 0 36M = 74559338 -38945898 CCCAGAGCAGAAGTCCTACTTCAGCCAGATCAGGCC --IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:34891 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1019:1317 177 chrUn 74559338 0 36M = 113505236 38945898 AGCTAAGAAACAACTCGCTCTGCACAGTGCTCTTAC II,8IIIIIIIIIIDIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:41649 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1498:676 83 chr19 18827597 60 36M = 18827241 -392 ACACCAGGACTTAAGGTTACCACTTAGAATTAGTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1498:676 163 chr19 18827241 60 36M = 18827597 392 AAAGACACAGGTTCAGCTTGTCTGCATAGAAACTAA IIIIIIIIIIIIIIDIIIIIBI@II@I6III9>H?9 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1415:875 83 chr1 76298171 60 36M = 76297829 -378 ACCACAGAGTGAGAACACTTGGCCCCAGAGTTGGTC >I7IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1415:875 163 chr1 76297829 60 36M = 76298171 378 AATGACAGAGTGGGCTCCTGTCTTGGAAAGGTGTTA IIIIIIIIIIIIIIIIIIIIIIII'C+EII70I=I8 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:636:1654 83 chr4 6289843 60 36M = 6289506 -373 ATGATTTATGTAATCAAGGAGTTATTAAACAAAGAC IIIIIIIIIIIIIIIIIIIIIII8IIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:23C12 +HWI-EAS91_1_30788AAXX:1:2:636:1654 163 chr4 6289506 60 36M = 6289843 373 ACTTAAATAGCATGAGCAAGAAAGGACAGCAAACAC IIIIIIIIIIIIIIIII.IIIIIIIIIEBI0IIIDI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1472:699 97 chr25 18170225 37 36M chrX 23336108 0 GTCATCTAATGAATAAATAAGCTATTATTAATAATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1472:699 145 chrX 23336108 0 36M chr25 18170225 0 GATCCCAGGTGCGGACATGGCACCGCTTGGCAAAAG II)5E?EII*IEIIIIIIIIICIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:133 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1508:1518 83 chr27 9034212 60 36M = 9033853 -395 CCACACACATACACACAACAACCCACAAACTCCCAC &EI*III9IAIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1508:1518 163 chr27 9033853 60 36M = 9034212 395 AGCTAGAACTAAGGTCAAGGCAGGCAGTGAAGTTTC IIIIIIIIIIIIIIIIIIIIIHII@DI*I/3C+BI+ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1343:473 99 chr8 61268888 60 36M = 61269254 402 GTGACTCTGGCTTAAGCATCTTACCCTCTGTATAAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII5III9 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1343:473 147 chr8 61269254 60 36M = 61268888 -402 AAAGGGAAGCAATTTCCTAAGTTTTTTCTAGAACAT DIIIDIIIFIII>IIIIBIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1663:1247 97 chrUn 45432445 0 36M chr13 22680350 0 GTCTTTAGAGAGAAGGTCATCTCCTTTCTTCTTCCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:6 X1:i:230 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1663:1247 145 chr13 22680350 0 36M chrUn 45432445 0 GGTCAAGTTGGTTAAGATTGAAATGAATCTAATTAA .E3.9III2IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:20 X1:i:39 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1024:236 83 chr15 49101753 60 36M = 49101413 -376 GAGGAAAGGTAAAAAAATACACATGTAACTTCAAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1024:236 163 chr15 49101413 60 36M = 49101753 376 GGTAACGATGGGACTAATTTGGCTTCACATGGAGTT IIIIIIIIIIIIIIIHIIIIIIIIIIII3I>I:III XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1729:1071 99 chr3 78578575 60 36M = 78578929 390 GGAATATGGATGTGAACAAGATAGAAAAAGTCCAAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIBII94I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1729:1071 147 chr3 78578929 60 36M = 78578575 -390 GGGCAGGGGCTGGATTCTTACAGCTTTGTCCATCAT III17IIDII5IIIIDIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1735:16 69 * 0 0 * * 0 0 GNNNNNNGTTGGTACGCANNTTNTTAATNCNNGGTC I""""""IIIIIIIIIII""II"IIIII"I""I%II +HWI-EAS91_1_30788AAXX:1:2:1735:16 133 * 0 0 * * 0 0 NNNNNNGGAANANNNNNNGGCAGACCCTCANNAGNN """"""IIII"I""""""IIG=I>IIIAI5""&I"" +HWI-EAS91_1_30788AAXX:1:2:1588:725 83 chr20 29609699 37 36M = 29609339 -396 GCACATTTACCTGCTGGTAGTATTTAAACTTTGCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1588:725 163 chr20 29609339 37 22M1I13M = 29609699 396 AGGTCTCAACTCCTCATCCCCACCCCCCAGCCTCCC IIIIIIIIIIIIIII:IIIIIIIIIIII*:II6III XT:A:M NM:i:3 SM:i:37 AM:i:37 XM:i:2 XO:i:1 XG:i:1 MD:Z:22A5C6 +HWI-EAS91_1_30788AAXX:1:2:944:177 99 chr7 15629437 60 36M = 15629792 391 GAATATGGAAGACCTGAACAACACAATCAACCAAGT IIIIIIIIIIIIIIIIIIIIIIIIIDIIIIIII=I1 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:944:177 147 chr7 15629792 60 36M = 15629437 -391 CTCCTGGGATGAAACTAAAATTGTGCTGTATGAAAA <08I>IIIIIIIIIIFIIII,5IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:815:671 99 chr18 28563846 60 36M = 28564192 382 GTGTGTTTGTGCTCAGTGGTGGCTGGGGCTGGAGTC IIIIIIIIIIIIIIIIIIIII&II3D14@IIIIIF- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:815:671 147 chr18 28564192 60 36M = 28563846 -382 CAGATATTTTAATGATAATCACATTTTCAATACAAA 'I0IDI,IIGIIIIIIII9IAIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1445:171 83 chr22 49688260 60 36M = 49687914 -382 AGAACATTATAGAACTGCTTTTTTCAAACCAGATAC IIIIIII<IIIIIIIIIII<IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1445:171 163 chr22 49687914 60 36M = 49688260 382 TGAATGACATGGATATGTATAGAAAGTTGTCATATT IIIIIIIIIIIIIIIIIIIIEIII=I:I/G*%H:II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1197:225 97 chr1 72600606 23 36M chrX 49385361 0 GGGGTGTTGAGGTCCCCTCCTATTATTGTATTGCTG IIIIIIIIIIIIIIIIIIIIIIII1IIIIGIIIIIH XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:156 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1197:225 145 chrX 49385361 0 36M chr1 72600606 0 GTGTGTTTCCTGGAGGCAGCATATTGTTGGATCTTG IIC4II7AII5IIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:948 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1380:1247 83 chr15 67477565 60 36M = 67477190 -411 TGAACCCCACCCTGTGCCAGGGTGGGGGCAGGCTTC <IIIIIII<III6IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1380:1247 163 chr15 67477190 60 36M = 67477565 411 GGAATGCACGCAGCCAGCTGTATGCTCACATTAGCT I=IIIIIIIIIIIII?IICI?4III9I/;+EG-2C3 XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:1A34 +HWI-EAS91_1_30788AAXX:1:2:1485:1544 97 chr21 45548265 37 36M = 45548595 366 GCCCTGAATTAATAGTTTCTTGGGGGACTTTTCAAA IIIIIIIIIIIIIIIIIIIIIII3IBDIIIIII@H< XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1485:1544 145 chr21 45548595 0 36M = 45548265 -366 TGCACAATGTGAATGTACTTAATGCCACTGAACTGT 6<-I2II6I=IIIIIIIIIHIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:6 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1422:1170 81 chrUn 96869971 0 36M = 62682824 -34187183 TGGGCGATGAATGCCTGAGTCACATGTCAGCCATGC .IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:14 X1:i:72 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1422:1170 161 chrUn 62682824 0 36M = 96869971 34187183 TGGCTGTGCTATGCCTGAACCACGGGTTAGACTTAC IIIIIIIIIIBI>IIE9>HHI'F7II1A+:)/7I+< XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:18 X1:i:3 XM:i:1 XO:i:0 XG:i:0 MD:Z:31G4 +HWI-EAS91_1_30788AAXX:1:2:901:1618 81 chr13 45047 0 36M chrUn 31854463 0 TGTGATCTCAATAATGAGCAGAAGATAAAAACAATC DIIII<:I*I-I/IIIII<IIIIIIIIIIIIIIIII XT:A:R NM:i:2 SM:i:0 AM:i:0 X0:i:43 XM:i:2 XO:i:0 XG:i:0 MD:Z:10C1C23 +HWI-EAS91_1_30788AAXX:1:2:901:1618 161 chrUn 31854463 0 36M chr13 45047 0 GTTATGATCCGGCTATCCCACTGCTGGCTATTCTTC IIIIIIIIII)III?IIII/II>II-=FH6II4$@I XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:25 X1:i:4 XM:i:1 XO:i:0 XG:i:0 MD:Z:33A2 +HWI-EAS91_1_30788AAXX:1:2:559:1049 99 chr30 8613410 60 36M = 8613783 409 GTTTTTAAAGTCAGATGAGCTGTGTTCAAAGGTAGG IIIIIIIIIIIIIIIIIIIIIII6IIIIIIC$IC-- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:559:1049 147 chr30 8613783 60 36M = 8613410 -409 TAGAAAGGAAGCAAAATCTAAAACAACAAACAAAGC BI>III=IIII+IIIII(IIIII6IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1070:202 83 chr6 65434195 60 36M = 65433844 -387 CTTGGCAGAAAGTTCTGTGGAGTTAGGGGAACTATC I=5IIIIIIIIICIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1070:202 163 chr6 65433844 60 36M = 65434195 387 CTACCCCTGTTGAATAATAACAATAACGACAGTTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIA2@.F:FII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1698:468 97 chr17 2528966 37 36M = 2529260 330 GCAGGCCTTTTCCCCCTTATGTTTGATAGTTTTTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIDIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1698:468 145 chr17 2529260 23 36M = 2528966 -330 GTTCTTTTTTATCCTGTTTTCAGTTCTCTCTCAGGG I>HIII?E<@IIII>IIII:IIIIEIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:2 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1444:970 83 chr30 4909358 60 36M = 4909058 -336 ATGGGGCTTGTTAAAATGCATGTTCTGGTCCCAACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1444:970 163 chr30 4909058 60 36M = 4909358 336 AAGGGAACAGCAGAGGTAGTCTCAGAGCCATGGAAA IIIIIIIIIIIIIIIICII8III4ICIBI4III463 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:888:1721 83 chr28 33436016 60 36M = 33435676 -376 GATTTTTAAAAAGCAGGCATTAATGCAGATCAGCAC II@E9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:888:1721 163 chr28 33435676 60 36M = 33436016 376 ACTGCAAAAGCAACTGCTTCTTCTTTCAGATTTTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIII6IIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1472:316 113 chr4 30677060 0 36M chr8 41431211 0 CATCTACAAAGCCAACATTATCCTGATACGAAAACC IIFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1472:316 177 chr8 41431211 0 36M chr4 30677060 0 GGAAGGTTGTATGTTTCTAAGAATTTATCCATTTCT IGCIEI@IIGIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:434 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1535:917 83 chr14 86071679 60 36M = 86071350 -365 GCCCTGAAGGCCCGGCCTGGAGCGAGGGCCAAGGTC IIFI1IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0A35 +HWI-EAS91_1_30788AAXX:1:2:1535:917 163 chr14 86071350 60 36M = 86071679 365 ATTGTTGGAGGCAAAACTAGTAGCTGAAGAGTTAAT IIIIIIIIIIIIIIHIII;II7IDII4II=B=I::@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1697:657 113 chrUn 111149580 0 36M = 77773663 -33375917 GCCAGAAACGTGTTCATGAGATGCTGGAACCACACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1121 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1697:657 177 chrUn 77773663 0 36M = 111149580 33375917 GTTCCTGCATGCCCGGCAAGTGATTCCGGAGTGTTC F?0II6<H=+IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1413 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1018:1228 97 chr23 41036508 0 36M chr5 99680089 0 GGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAG IIIIIIIIIIIIIIIIIIIIIIIII0IIIHI*II:% XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:174 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1018:1228 145 chr5 99680089 0 36M chr23 41036508 0 GGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTA IIIIEIIII;1IIIII3EIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:171 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1243:1115 99 chr7 2472852 60 36M = 2473160 344 GAGACCATTGTTCTGCCCACTACAGGTTTGAATGGG IIIIIIIIIIIIIIIIIIIIIII=II=IIIIIIHI; XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1243:1115 147 chr7 2473160 60 36M = 2472852 -344 TCAACCTGGTTTTGGTCCTGGCTGACTCTCCACCCA 0H@.II<FA6II>II1II8IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1654:1680 83 chr7 43150282 60 36M = 43149917 -401 CTAACTTTGTCTTTATTTCCTCTGGGACATACAAGC IIIIIAIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1654:1680 163 chr7 43149917 60 36M = 43150282 401 TTTGTTCCAAAAACCTTCTCAGTCCCCACGTTGCTA IIIIIIIIIIIIIIIIIIII,IIIIII=II,DAFI& XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1609:620 99 chr31 20888302 60 36M = 20888687 421 GGTCCTAGTGGAACTTGAAGACATTTTAGGAGATGT IIIIIIIIIIIIIIIIIIIIIIBIIIIIII5IIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1609:620 147 chr31 20888687 60 36M = 20888302 -421 TAAATGAGGGCACTGAGCAATAGTGTCACTGAGCTG IBIE)IIIIEIII=I;IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1708:1857 99 chr1 128754664 60 36M = 128754974 346 GTCTACTCACCTGTTATTAGGGGAAAGTCTAATGGC IIIIIIIIIIIIIIIIIIIIIIIHIIIIIIIII7CI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1708:1857 147 chr1 128754974 60 36M = 128754664 -346 ACTGAAGCGAGTCCCTAGACTCACCCTTCCTGACGC (./IFIIIIIIIIIIIIIIIII>IIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:20G15 +HWI-EAS91_1_30788AAXX:1:2:1480:1039 99 chr3 99988287 60 36M = 99988574 323 GTATGATTCACCTTAGAGAGGGGAGAAACCCCACTG IIIIIIIIIIIIIIIIIIIIIIIIII?IIIIIIHII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1480:1039 147 chr3 99988574 60 36M = 99988287 -323 TTTCAGCCGAAAGCACACCTGTGCGAATCTGATGTG =I6IIIA1IIIIII*I2IIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:8T27 +HWI-EAS91_1_30788AAXX:1:2:853:685 99 chr3 25386001 60 36M = 25386369 404 GAATGTGTTCATGGTGATCACAGATAAGCGTAACAG IIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIA XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:853:685 147 chr3 25386369 60 36M = 25386001 -404 TCACACTGCACATGTTTGTACTGTTCTTAAGCTCCA 6>:I;H-II:GIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1720:542 99 chr28 10455455 60 36M = 10455783 364 GCTTTGTGACTACCATGAGGCCTAAGTAAACCATCT IIIIIIIIIIIIIIIIIIIIIIIIII@IIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1720:542 147 chr28 10455783 60 36M = 10455455 -364 CCCACATTTATGCTTTTGATATCACAATTTATGTCT I039II@;+I+II2IIDIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1738:808 99 chr4 30829932 60 36M = 30830303 407 GTGCTCCTTTTTCTAAGAGCAAGTTAAATGTTTATG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1738:808 147 chr4 30830303 60 36M = 30829932 -407 TGTAGGTCATTGAGGGAGTTGTTACTGTAGCATAAA 88649H>=?5>IEIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:578:1129 99 chr3 109664597 60 36M = 109664885 324 GTTGCAACCACATGCAAAGACTTATTGACTTTCCCA IIIIIIIIIIIIIIIIIIIIIIIIII(III'IIHI? XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:30G5 +HWI-EAS91_1_30788AAXX:1:2:578:1129 147 chr3 109664885 60 36M = 109664597 -324 GAAAGGCATTAATGCCTAAAATAAACACAGACAGGA &I&I=?%IIIIICI4BIICIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C15C17 +HWI-EAS91_1_30788AAXX:1:2:1761:1701 97 chrUn 11956658 0 36M = 22770279 10813657 GATTGATTTCTTACATTTGATATTGCAATATTCTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIBIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1761:1701 145 chrUn 22770279 0 36M = 11956658 -10813657 TTTGCTGTTTTTACAGGTTCAGCTCTTTTAAAATCC IECII95C@EHIIII%IIIIIIIIIIIIIIIIIIII XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:4 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:15A20 +HWI-EAS91_1_30788AAXX:1:2:1479:1030 113 chr4 89055445 0 36M = 89182569 127124 AGTCTAAGGCTGTGACTTCATTCCTGGAGCAGTATC IIEI7IIIIIIIIIIIIIIII=IIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1479:1030 177 chr4 89182569 37 36M = 89055445 -127124 TTCAAGTTAGACAGTGAAGTGCTTGCAAAACCAGGA 130IICD<IIIIII=IIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:749:663 83 chr1 144501310 60 36M = 144500947 -399 ACAATGATCTAGAAGGTAGGTTTTACTTTCATTTAC IIIIIII@IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:749:663 163 chr1 144500947 60 36M = 144501310 399 AGAAAAAAAAAGATATTAAAGTGGGGAGAAAAATAG IIIIIIIIIIIIIIIIIIIII7IIII5IHAE?3A9C XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1134:880 83 chr11 15523160 60 36M = 15522809 -387 TTATATGCTACAATGAATTTTCTTTAAAACAGGATC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1134:880 163 chr11 15522809 60 36M = 15523160 387 ATTATAGCACTCAAGAAATTGCTGCTGTTTTTGCGT IIIIIIIIIIIIIII12IIIIIIII?IIIIII)G6I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1300:1495 99 chr28 16045269 60 36M = 16045663 430 GTATTCATTCCATAATTATTTCTTAAGTGCATGCTA IIIIIIIIIIIIIIIIIIIIIIIIII-IIIIIIII7 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1300:1495 147 chr28 16045663 60 36M = 16045269 -430 TTGATTTGAGATATGCACTGATAATAATAATAATAA I5;I6=2>I9III7=5?58IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:964:1558 99 chr1 54819618 60 36M = 54819982 400 GGTGGCAGACTCACAGGTTGAGGATGCATTTGACGA IIIIIIIIIIIIIIGIIIIIIIIIIII4III4IDG9 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:964:1558 147 chr1 54819982 60 36M = 54819618 -400 AGACCTGTTTGGGAGGGAGAACAAAGGATGAGCTGG II15:-I+.AIII<IGBIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1372:812 99 chr3 79518145 60 36M = 79518429 320 GACTCAAAGCAAGTATGAGAGAGAGAGAATGAGTGA IIIIIIIIIIIIIIIIIIIEI;IIIDI/IIIIIIIH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1372:812 147 chr3 79518429 60 36M = 79518145 -320 TTCAAGCTGCTGGATACCTCTAGTCCTGCGTTTATC /9IGCIIIII:IIIIIIIFIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1364:1610 99 chr14 79263090 60 36M = 79263430 376 GCTTGATAAAAGTGCTATGTCTGCTGGCACGGTTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIAIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1364:1610 147 chr14 79263430 60 36M = 79263090 -376 TTAAGCTCTTTTCAGAGGCATAAAATTCTCATAGAT ?IIIIIIIE>67IIIIII&IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1599:532 97 chrUn 39953305 0 36M = 16417999 -23535270 GGCCTGAGTTGGTAGATGGGAAACAGGAGTGAGCTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIH XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:4 X1:i:4 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1599:532 145 chrUn 16417999 0 36M = 39953305 23535270 GACCCATGGCCCTCCCTGGCCTTACCTTCACTTCAC I*IIII4I@IIICIII6IIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:3 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:748:716 99 chr15 67406696 60 36M = 67407044 384 GAGCAAGTGGTGAGGAAAAAGGAAAAAGACTAACGA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:748:716 147 chr15 67407044 60 36M = 67406696 -384 AGTACAAAGTATCTAGAAACAGATCTAACTAAACAG I68I4IIII8II5IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1178:638 83 chr8 11855234 60 36M = 11854910 -360 TCTCCAGGACAATCCAGCTGCGGAACAATGAGAAGC :I@IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1178:638 163 chr8 11854910 60 36M = 11855234 360 CAGATTAAATCAATTAGAATTCAGGGGGCAACACAG IIIIIIIIIIIIIIIDIIIIIIIIIIIIH6FII=8G XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1600:753 65 chr11 30398198 23 36M chr6 39077183 0 GGAGTGAGACTCCCGACCCTCCACTCCAGCACCTGA IIIIIIIIIIIIIIIIIIIIIIIIIII=IIIIIII: XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1600:753 129 chr6 39077183 37 36M chr11 30398198 0 ACACATCTTGAAGCTATTCCTAAGTATTGAATAGAC IIIIIIIIIIIIIIIEIIIII50II>IIAIFII@C@ XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:884:1170 83 chr6 64392331 60 36M = 64391995 -372 TGCTTGGAAAAGGCCCTGGCTAAAAACCAGTCAGTC II1F2IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:884:1170 163 chr6 64391995 60 36M = 64392331 372 AGTTGAAGTTGGGGAAGAGATGGGTCAGTGTTTTTT IIIIIIIIIIIIIICII7IIIIIIII+IIHIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:774:1064 113 chrUn 36953921 0 36M chr17 18828330 0 TCACTCTCTCCCTTCCTTTCTGTTCCCATTGCTACC IIII>I@I@IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:774:1064 177 chr17 18828330 0 36M chrUn 36953921 0 TGTGGAGAGAAGAACAGAAAGCCAAGGATCAGGCCT 8I/IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1740:879 83 chr24 9043542 60 36M = 9043129 -449 TTGCAGCACTTTAAAGATTGTTCCATTGTCCTCAGC 9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1740:879 163 chr24 9043129 60 36M = 9043542 449 ACCTGTGACTTAATCTACCTGTAATGAGTGAGGGAG IIIIIIIIIIIIIIIIIIIIII2>II/I@@6AID-E XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1780:1146 81 chr9 72044793 37 36M = 72040983 -3846 GATTGGTTATGGAGTGTTTTTGTCGACATTAGAAAC IIIFIIIGIIIII$IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13T22 +HWI-EAS91_1_30788AAXX:1:2:1780:1146 161 chr9 72040983 37 36M = 72044793 3846 ACGACTCGCTCATGCGTCTTATAAATTGCTATTTAG IIIIIIIIIIIIIII=:III7II2I?II@GC7HI92 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1690:1211 99 chr27 28697691 60 36M = 28698025 370 GTTAAATGTTTAAATGCCTGTGTAGGAGATGTCGTC IIIIIIIIIIIIEIIIIIIIIIII>IIIIIIIIHII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1690:1211 147 chr27 28698025 60 36M = 28697691 -370 TAAGCATTTGTTGAGGAAGATAATTTCCATTTAAAT II0+II<ICIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1478:1397 113 chrUn 80088687 0 36M = 100046230 19957543 TTGTGCCTTTCAGCTCTAGGGCAAAGTAGCACACCC ;GIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:26319 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1478:1397 177 chrUn 100046230 0 36M = 80088687 -19957543 ACATCTCTTCCAAAGGCCTGTGAAACGCAGTTTCTT III1IDIE2IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:29939 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1583:1240 83 chr9 53940252 60 36M = 53939909 -379 GAATCCATTTCTAGTAAAAGACATGGATTATTTTTC IIIBIIIFIAIIIIHIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1583:1240 163 chr9 53939909 60 36M = 53940252 379 GTCAAAGTCACAATGTCCATCACACTGTAGCTGAAT IIIIIIIII?II@IIIII;II0I>I;I=FIB+H,61 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:904:607 117 chrUn 29088831 0 36M = 29088831 0 CCGGCGGGGAATGCCGGAACCACCTCTCAGAAGAGC I0#3=%II3$I%5B&I9IIIIIIIIIIIIIIIIIII +HWI-EAS91_1_30788AAXX:1:2:904:607 153 chrUn 29088831 0 36M = 29088831 0 GCAGGTGATTTTGTCATGTCCGGCAGGTGGTTCCGG I2,II3ID=ID5I5II4ICIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:7 X1:i:54 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1671:566 83 chrUn 23136659 60 36M = 23136303 -392 ATACTTGAATAGCACACATATAGAAAGAAGAGTGAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1671:566 163 chrUn 23136303 60 36M = 23136659 392 AAGGTTAGCTGGACTTCCTATGCGGCATCTCATGGC IIIIIIIIIIIIIIIIIIIIIIIIIIDIIII:IIDI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1028:686 99 chr8 17127041 60 36M = 17127307 302 GTAAGTGGAGCATTGTAGGCAAGACACCTCAACTCC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1028:686 147 chr8 17127307 60 36M = 17127041 -302 CAGTCAGACCAAAATTGGGAGTGAGGACTGATTATT III@IIIIIDIIIIBBIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1072:893 99 chr14 11799682 60 36M = 11800055 409 GTTGCTTCTGAATTCAAATCCTGGCTTCGATCTTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIII0IIIII- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1072:893 147 chr14 11800055 60 36M = 11799682 -409 AAGAAGGTGACATCCGAGTAATGACTTGAAAGTGAG :IE?2IB>I=;I1IIIII8IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1768:473 97 chr7 66951441 37 36M = 66951844 439 GACCTTTAAGCTGAGATCTGGAAAGGATAAATAAAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1768:473 145 chr7 66951844 0 36M = 66951441 -439 TCTTGGTGTTGTACATTCTATAGGTTTTGACAAATG 7IC6II+D??IIIII7IIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:22 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1247:170 99 chr23 30466664 60 36M = 30467002 374 GAAACTGAGTTGCTCCCACAGATGAGGAAATACTGT IIIIIIIIIIIIIIIIIIIIIIIIHIII@II@IIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1247:170 147 chr23 30467002 60 36M = 30466664 -374 AGTTATAACCTGTGAATACAACCTGGTAACTGCTTC II94ICI>II:I7IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:884:1205 81 chr13 16097223 37 36M = 16096991 -268 AAGACGCTGAGGTGGACACAACATCCTGGAATTTGC IIIIIII:IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:884:1205 161 chr13 16096991 37 36M = 16097223 268 TGCTAATGGGTATGGGATTTCTTGCTGGAGTGATGA IIIIIIIIIIIIIIII5III=IIEGIII%6II4I;< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1269:1201 83 chr18 18783069 60 36M = 18782724 -381 CTCACATCTCAGACCTTCTTTCTGGAGTCATTTTTC I@IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1269:1201 163 chr18 18782724 60 36M = 18783069 381 CAGTAAAGTGCAAAAGGGAAAAGACAGAATGAAAAG IIIIIIIIIIIIIIIIIIIIICIHIBICBII?IF9I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:659:139 113 chr4 66980200 37 36M chr1 184527286 0 AGTGACTCTGCAGATCTCACTTCGGCTTGCTCCCAC II6B6I?I7II>IIIIIIII7IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:659:139 177 chr1 184527286 37 36M chr4 66980200 0 GCTCAGACTGGAGCTCATCCACTTGGTCTTGTAATA =531II9A4IIII?:II,BIIICIII9IIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1639:1462 113 chrUn 85140268 0 36M = 73253380 -11886888 TTCTTTGCAGGCCTGATCTGGCTGAAGTAGGACTTC I;II:GIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:33841 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1639:1462 177 chrUn 73253380 0 36M = 85140268 11886888 GCTGTGGGGCCCAACTCGCCCTTTGGAAAGAAGCCT I=1I7IIIIIEGIIIIII+III>?IIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:32111 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1434:1080 83 chr17 40637104 60 36M = 40636780 -360 ACAGTCAGGGCAGGAGGCTGACACTGCTGCTTGCTC IIII/I>IIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1434:1080 163 chr17 40636780 60 36M = 40637104 360 TAGATTTCCCAGTAACACAGTTTAGGATGTACTCAC IIIIIIIIIIIIIIIIIIIIIIIIII>IIIIIIIFI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:906:1786 99 chr4 101671836 60 36M = 101672159 359 GGTGATCCGGGCAGATAGCTATGGGTATTTGAATTT IIIIIIIIIIIIIIIIIIIIGIIIII@III0CEIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:906:1786 147 chr4 101672159 60 36M = 101671836 -359 CACAGACAGATTTTCTTCACCAAACAACAAAGTACG -I3IIIIIIIHFIIIIIDIFEIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:812:1388 83 chr21 23230527 60 36M = 23230178 -385 ATAATCATCTAAACAAGAGTGGGAGAGTAAATATTC IIIII5IE.3IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:812:1388 163 chr21 23230178 60 36M = 23230527 385 GTTAGTGTTTATCCTTTTCTAGAGTGGATTAACATT IIIIIIIIIIIIIIIII-IICA5III99II5405II XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17G18 +HWI-EAS91_1_30788AAXX:1:2:1490:147 83 chr8 60741676 60 36M = 60741393 -319 TATATTATCCTCTAATTTTTTTCTCAAATCTTCCTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1490:147 163 chr8 60741393 60 36M = 60741676 319 TCTGTCCTTCCCTCCATTCTTTCCCAGTGCAGTTCT IIIIIIIIIIIIIIIIIIIIIIIIIGIIII6IIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1070:758 113 chrUn 99196288 0 36M = 105300315 6104027 GGTGTGCTACTTTGCCCTAGAGCTGAAAGGCACAAC IIAIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:26260 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1070:758 177 chrUn 105300315 0 36M = 99196288 -6104027 GTTTCTTCGCTTCCCAAAGAGCTGGAAGCAACATGC /IGIIFAI>II@7IIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:22 X1:i:436 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1412:985 81 chrUn 83761658 23 36M = 66378956 -17382738 CTGATCCATTCCCCAAAACCACCTGCTGGACACGCC IBBICIIIH>IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:6 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1412:985 161 chrUn 66378956 0 36M = 83761658 17382738 GGAAGCACCTGCCGAGCTCACCGGAACCACCTTCTG IIIIIIIIIIIIII@IIII;II>I-III3II<GH78 XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:16 X1:i:197 XM:i:1 XO:i:0 XG:i:0 MD:Z:32G3 +HWI-EAS91_1_30788AAXX:1:2:1510:1194 113 chrUn 103925359 0 36M = 107925132 3999773 CATGCCCAAATCACCAGCCGGGTATGCCAGAACCAC .I>IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1209 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1510:1194 177 chrUn 107925132 0 36M = 103925359 -3999773 CGGCAGGTGGTTCTGGCGAGTCGAGCAGGTGGTTCC 7AE--IH*II/5I,IIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2723 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1218:1143 83 chr7 26001391 60 36M = 26001035 -392 TGCCTTGTGTCTGGGTTCATCGTCTCTGAGCTGGAC 0IE;5@I<IBI@IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1218:1143 163 chr7 26001035 60 36M = 26001391 392 AGAGAGAAATAAGGCCCAGGGGCAGGCTGCTTGGCA IIIIIIIIIIIIIIIIIIIIIII<II=II=IIII61 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1362:861 97 chrUn 111290702 0 36M = 113793760 2503094 GCCAAGTGGTTCTGGCATAGTCGGCAGGTGATTTTT IIIIIIIIIIIIIIIIIIIIIIIII3IIII:IIII% XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:8 X1:i:1465 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1362:861 145 chrUn 113793760 0 36M = 111290702 -2503094 TGTCTGGCAGGTTGTTCCGTTGTGCTTGGCAGTTGG &C:5&I9I.II<6I8<I=ICII7IIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:1305 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1111:1424 97 chr1 107720907 25 36M = 107720960 89 GCTCCATCTTTAGAGGCTGCAGTTTATGGAGGACAC IIIIIIIIIIIIIIIIIIII7III%0&)I2?+;ICI XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24G1G9 +HWI-EAS91_1_30788AAXX:1:2:1111:1424 145 chr1 107720960 37 36M = 107720907 -89 ATGTTGAACAGGAAACTTAAGGCAATCGTCTAAGCC I<IIBI4I&IIIIIIICIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C29 +HWI-EAS91_1_30788AAXX:1:2:1738:847 97 chrUn 108573406 0 36M = 110880346 2306976 GAACCACCGGCCGGACAGGCCAATATTAACTGCTGG IIIIIIIIIIIIIIIIIIIIIIIIHIIIIIBIICCG XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:322 XM:i:1 XO:i:0 XG:i:0 MD:Z:8T27 +HWI-EAS91_1_30788AAXX:1:2:1738:847 145 chrUn 110880346 0 36M = 108573406 -2306976 TCCCCTGTTGGGCATGCGCAACCACCTCTGAGACGT %9%I>%:*&II65E(FIG)IIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:1543 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1262:1592 113 chrUn 107670135 0 36M = 112162575 4492440 CTTGCTGGAACCACCTGCCAGTCATGCCAAAATCAC /1)D3)I7II?IIIIEIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:973 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1262:1592 177 chrUn 112162575 0 36M = 107670135 -4492440 TTCCGGCGTCTCCGGCACGTGTTTCTGGCACATCTG 5+EIIE<I@I0IIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2624 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1660:635 99 chr3 102828807 60 36M = 102829170 399 GGATGTTTATTAATTATATTATATATGTATATTATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1660:635 147 chr3 102829170 60 36M = 102828807 -399 GAGCAGAGAAGCTTCATGCAAAAATAACCACTTAGC 9=I/@IIIIIGII>II9IBIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:660:975 83 chr19 27427509 60 36M = 27427209 -336 GACACACACTCTGCATTTTGATACCCTGCTTTATCC IIBIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:660:975 163 chr19 27427209 60 36M = 27427509 336 TGCATATGAGTCTATAATACGTGGTGACCCAAAAAA IIIIIIIIIIIIIIIIIII&3I1II9GIII32I8BI XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:19T16 +HWI-EAS91_1_30788AAXX:1:2:964:915 83 chr21 40989788 60 36M = 40989445 -379 AATCAGAAACGTAAACATTATATCATAAAGAGGATC IIIIIIIIIIIIIIIIIIAIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:964:915 163 chr21 40989445 60 36M = 40989788 379 GTAACAGAATCTAGGCAATACAGTTTTTAACTTTCC IIIIIIIIIIIDIIIIIIIBI/I6IIIIIIIIIFBI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:958:1970 83 chr23 47815085 60 36M = 47814830 -291 TAAGAAAAAAATGCAATCTCTTGAAAGGTGTTTTGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:958:1970 163 chr23 47814830 60 36M = 47815085 291 CTTCCAACAATTGGATAGACAATTTATATCTAAGCC IIIIIIIIIIIIIIIIIIIIIIIIIIII>IIIFHII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1143:803 83 chr15 10493867 60 36M = 10493524 -379 GACATGTCAGATTCCCACCTGTTTCCCGACGTTCTC IIIIFIDIIIIHEIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1143:803 163 chr15 10493524 60 36M = 10493867 379 TTGGGATGACGGGGACATTTTCTGGAGGGAATGAAC IIIIIIIIIIIIIIII:IIIIII;373I4/9II88B XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1485:193 99 chr24 36426868 60 36M = 36427211 379 GGAAGAATTGGATATGATTTGCTTCGTTTCGTGTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1485:193 147 chr24 36427211 60 36M = 36426868 -379 TTTGAAATTCAAACTTAAAAGACAAATATTGAATAA ::2IIII?7=IIII3FIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:985:1580 97 chr31 21276734 37 36M = 21276965 267 GTTAAGTGGCTGCCAACTTACAAAGCAATCAGAACC IIIIIIIIIIIIIIIIIIIIIIIIHI=EII8IIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:985:1580 145 chr31 21276965 37 36M = 21276734 -267 GTTCCATATGTATCACCAATATGCAATAGGTGGCTG D?2E?&EIBIIIII6IIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C30 +HWI-EAS91_1_30788AAXX:1:2:902:407 113 chr14 19641522 37 36M = 5938340 -13703182 CACAGTATCAAAGGAACCAGTTTCTCTTTGCTTTTC >IAIIII?IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:902:407 177 chr14 5938340 0 36M = 19641522 13703182 CGATATTTAAGGTGGTGGCTTCAGCCATTTTGGCAA 07E4DI<)I1II3II.IIFIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:55 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:634:806 99 chr16 11794041 60 36M = 11794372 367 GCCAACATTTCACTTTTCTCTTCTTCCTAAGAGAAT IIIIIIIIIIIIIIIIIIIIIIIIIIII8B)I-9HI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:634:806 147 chr16 11794372 60 36M = 11794041 -367 TTTGTATGTTCTGTCTGGAACTATATTCTGTTTTAC 9:<F?I8GIII9II<IIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1124:426 99 chr7 20982917 60 36M = 20983283 402 GATATAGACATAAATTATTGATATGTTTGTAACTGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIGIIGI5I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1124:426 147 chr7 20983283 60 36M = 20982917 -402 ATTATTGCTCTAAAAAAACAGTAACAGTTATCTTTC I:4I;I8>258IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1042:1530 83 chr11 41005020 60 36M = 41004681 -375 TTGCAGTCCATTTTCTCTAGGTTGCTACCACACTTC IDIIIIIIIIIIIIIDIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1042:1530 163 chr11 41004681 60 36M = 41005020 375 TATAGTATAATTTATTTAAAAAGTTATGTCAAAATA IIIIIIIIIIIIIIIIIIIIHDCIIII;IIIG7>IF XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:22A13 +HWI-EAS91_1_30788AAXX:1:2:1357:981 97 chr4 95450892 23 36M = 95451231 375 GAAGGCATCAGTCAGGGGAGATGGGGGATTATGATC IIIIIIIIIIIIIIIIIIAIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:7C28 +HWI-EAS91_1_30788AAXX:1:2:1357:981 145 chr4 95451231 37 36M = 95450892 -375 GGCATCACATACAAAAAAGGTTTTACTGAGGCCAAA G;-IE*I:I?I:IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1576:1152 83 chr1 96562410 60 36M = 96562070 -376 CTCCAACTCTCAATTTCCTCATCTTGCCTGTAGCTC I6IIIIIII<IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1576:1152 163 chr1 96562070 60 36M = 96562410 376 GAATTTACCATTTAAATGTGGAGCTTGTAGGCTATA IIIIIIIIIIIIIIIEI-IIIIIIIIEI:<';IIIH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1688:1878 97 chrUn 108036525 0 36M = 101052104 -6984385 GAAACAACTCGCTCTGCTCAGTGCTCTTACAGCCTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII5II XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:515 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1688:1878 145 chrUn 101052104 0 36M = 108036525 6984385 TTTGCCCTAGAGCTGAAAGGCACAACGTGCAGGCTT ;D<II0950IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:25787 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:630:626 97 chr2 43856533 23 36M = 43856851 354 GCTAGAAGCACCCACAACTAAAAATATACAGCTATG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII: XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:7 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:630:626 145 chr2 43856851 37 36M = 43856533 -354 ACCCAGTCACTACCAAAGAACAGGTGCTCAATAAAT IA5=IE>CIIBIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:834:631 83 chr4 86840641 60 36M = 86840285 -392 GCTGCCTGACTCCAGGTCCAGGATCCTTTCTGCTAC II*IIIFIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:834:631 163 chr4 86840285 60 36M = 86840641 392 ATGATGATAGCACAGAGCCCCAAGCACCATAGAAGA IIIIIIIIIII9III1IIIII/.IIEII?3II05I2 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1174:1342 99 chr13 26637126 60 36M = 26637411 321 GAAGTTCCAGGCTGCTACCATGTGCAAATTCACCAG IIIIIIIIIIIIIIIIIIIGIIIIIIGFIIIIII9I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1174:1342 147 chr13 26637411 60 36M = 26637126 -321 CTGCTGTTTCAAACCTTTATCTTTTCTCTTCTTCTT I6IFII9EIIIIIIIIIIIIIII?IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1220:1220 83 chrM 3645 60 36M = 3288 -393 ACTTCCTACCACTCACACTAGCCCTCTGCATATGAC I7D6IHDIIIII<IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1220:1220 163 chrM 3288 60 36M = 3645 393 GATTAATCTTCCCATCATGACCCTTAGCCATAATGT IIIIIIIIIIIIIHIIBII=IIIII5CII?I-2I;I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1058:1963 97 chr27 5803497 0 36M chrX 60891847 0 GTTAAAATGTCCATGCTTCCTAAAGCAATCTACAGA IIIIIIIIIIIIIIIIIIIIIIICIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:17 X1:i:495 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1058:1963 145 chrX 60891847 37 36M chr27 5803497 0 GGGAACAGGATCGAGAGCCCAGAAATAAACCCACAG IIIII6IIIIIIIIIIII9IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1319:565 97 chr23 16144729 23 36M = 16145065 372 GAACAGCCTCCACCATTTTGGCGAGTTACTCAGTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIGIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:2 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1319:565 145 chr23 16145065 37 36M = 16144729 -372 AAGAATTGTCATCATTCTTCCAGAGAAAAGCACTGA IIFIID?IIIIEIII=I>IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:659:154 81 chr21 39264890 37 36M = 39264584 -342 TATGGTTATGTGAGTACAAAATATGCACTGATCAAC 6IGII7HIFIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:659:154 161 chr21 39264584 23 36M = 39264890 342 ATTGGGCCGGCCCGGTGGCGCAGCAGTTAAGTGCAC IIIIIIIIIIIIIIIIIIIII?IIEI2I0955E=.I XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:3 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1522:876 99 chr17 48464934 60 36M = 48465263 365 GATCTAATTCTCATTCCTTATATCTTATTTGTGAGA IIIIIIIIIIIIIIIIIIIIIIIIIIEIIIIIEI;G XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1522:876 147 chr17 48465263 60 36M = 48464934 -365 CTCACCGACATCAACAGCCCCTTGCCAGTGATCTTG I#3'I0274;0=I2IIFIIIIFHIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1459:1405 97 chr14 46696116 37 36M chr1 156091431 0 GTAGACTGTGCTGGTTTCTGTGGTTTCAAAAACAAA IIIIIIIIIIIIIIIIIIIIIIIIIII=I5HIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1459:1405 145 chr1 156091431 23 36M chr14 46696116 0 CTCAGGGCCAGTCTTCCTCTGCAAAAGGAGGAGGAT @,=@IIIIIIIII<7II8)IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:508 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:842:897 99 chr2 43072300 60 36M = 43072680 416 GCTGGCAATCTCAATGGGGCCATAAAACATTTACTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIAII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:33T2 +HWI-EAS91_1_30788AAXX:1:2:842:897 147 chr2 43072680 60 36M = 43072300 -416 ACTCTTTTGTTTTGCTAGGAGCCCAGAGGAAATAAA 73A@67IIIIBI1IIIIIHII?IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1313:452 99 chr19 40447606 60 36M = 40448042 472 GGTTCTGTGGATGGATGAGCAAATTTTATCCTCCTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII6 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1313:452 147 chr19 40448042 60 36M = 40447606 -472 TTTATGGCGTGGATCACCTCAGCCACTCTTGCTTCC ?;+'&I5.2*7/34I$II'IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1638:1475 83 chr18 23020312 60 36M = 23019926 -422 TTACCTTAAATCAATTTGATTAAAATATTTGTTCTC II=IBIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10G23C1 +HWI-EAS91_1_30788AAXX:1:2:1638:1475 163 chr18 23019926 60 36M = 23020312 422 CTTCCAATAACCTATTTGGGTTCTTTTTGCCCAGCA IIIIIIIIIIIII<IHI-II=IIIIIII8ABI5@I2 XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1362:1308 113 chrUn 81373756 0 36M = 81897962 524206 CACAGTGCTCTTACAGCCTACCGGGAACATCTCTTC II4II9GICIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:23692 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1362:1308 177 chrUn 81897962 0 36M = 81373756 -524206 AATGTAGCACACCCAGAGCAGAAGTCCTACTTCTGC IIDI?IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:201 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:642:173 99 chr29 5943208 60 36M = 5943550 378 GTTCAATACTTTATTTTTGCCATATAAAAGACCAGT IIIIIIIIIIIIIIIIIIIIIIIIIICI?7IIIHDI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:642:173 147 chr29 5943550 60 36M = 5943208 -378 AGGCTTGTTGAAATCTAAATAGACACCATTCATGAG IDII>=FI8IIIIIIIIII8IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1653:121 83 chr13 31945064 60 36M = 31944711 -389 GCCATACAACTCACCTAAGAGAGTGGCAGTGGTGTC IIIIEIIIII7I>II?IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1653:121 163 chr13 31944711 60 36M = 31945064 389 TCAAGACTTGAGAAATTCTTAAAGCCAAATGGTAGG IIIIIIIIIIIIBIIIIIIIIIDIIIIIHIII-III XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:784:1027 81 chr6 36269809 23 36M = 36269464 -381 ATACTCTTTGGAGAAATGTCTGTTCAGATCTTTTAC ID7I=I>IIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:784:1027 161 chr6 36269464 37 36M = 36269809 381 TGCAGTGAACATAGGGGTACATATACCTTTGTGCAT IIIIIIIIIIIIIIIIIIIIIIIII@IIII9I;C0I XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:669:1425 69 * 0 0 * * 0 0 GTTAAATCTTCCTATCACACATCTGCTTACAAATCT IIIIIIIIIIII%%III0?%6A(II%D+&I&>,&I0 +HWI-EAS91_1_30788AAXX:1:2:669:1425 133 * 0 0 * * 0 0 AAACCATCCTGTAACGCCCAACCCCACGCCCCGCCG III&*I%III&)&(4I&GI+-4D%-)263&4$E1&) +HWI-EAS91_1_30788AAXX:1:2:1766:397 113 chr15 13414658 0 36M = 27517540 14102882 CAAACCTAAAAGAAGATATCAATAATAATACAATAC III>IIIIIIIIIIIIIIBIIIIIIIIIIIIIIIII XT:A:R NM:i:2 SM:i:0 AM:i:0 X0:i:18 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:19T15A0 +HWI-EAS91_1_30788AAXX:1:2:1766:397 177 chr15 27517540 0 36M = 13414658 -14102882 TCAATCCATTTACATTTAGGGTGATTATTGATATAT A8&I=II@40ICIIB;IIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:44 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1411:1408 99 chr2 57937465 60 36M = 57937806 377 GGGAAGTTGATGCTGTCCTGCCTCCCCACTTTTGGA IIIIIIIIIIIIIIIIIIIIIIIIIII4IIIIII;8 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1411:1408 147 chr2 57937806 60 36M = 57937465 -377 TAAGGGTAATTAGAGAGTAGAAGAAGTGCTCTGTAA )IIIIIAI?:IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1747:1814 99 chr25 19852920 60 36M = 19853251 367 GCGGGGAGCGTTCGGCGTGCCAAAATCTCCCTCACT IIIIIIIIIIIIIIIIIIIIIIFF?IIIIIIIIAII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1747:1814 147 chr25 19853251 60 36M = 19852920 -367 TATCCTTCATTTAGAATGGAGATATGTGTAAACTTT FI8E?EG6I<EIIIII;IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1087:772 99 chr4 62794915 60 36M = 62795268 389 GGATGAATCCAGTTAAGGCGGAGAGATAGAAAACAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIGI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1087:772 147 chr4 62795268 60 36M = 62794915 -389 AACTGCTGACAGTTCTTCCATCTGGAGAAACAACCT III0<49I>IIIGGIBII+ICI@IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:970:578 99 chr11 15947479 60 36M = 15947793 350 GTCATTCACTGTTAGTCACTGCAGGAAAACTTGGTA IIIIIIIIIIIIIIIIIIIIIIHIIIIIIIIII:II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:970:578 147 chr11 15947793 60 36M = 15947479 -350 AGAGGGTTAATTCTACCTCCATTCTCGTTTGCAGGC ,;6IIGIIIIIIIC*IIIIIIIIIDIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1660:714 113 chrUn 87454800 0 36M = 101216854 13762054 GTGCAGAGCGAGTTGTTTCTTAGCTTCCCAAAGAGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:41347 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1660:714 177 chrUn 101216854 0 36M = 87454800 -13762054 CTTCTGCTCTGGGTGTGCTACATTGCCCTAGAGCTG II2IIII6I3III<IIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:9333 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:974:32 99 chr29 15739852 60 36M = 15740211 395 GGATAGGTGCTCAAAAACTTTTATTTGCTTATTGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIBI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:974:32 147 chr29 15740211 60 36M = 15739852 -395 GAGTGATCAACATAGTTTCCATACCATCCAGAAGAC %ID;&I:'IIII8IGII6@IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1109:887 99 chr7 41007644 60 36M = 41008001 393 GATGGATTATGCTAATGTGGGCCGACTTTTCTGCTT IIIIIIIIIIIIIIIIIIIIIIIIHIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1109:887 147 chr7 41008001 60 36M = 41007644 -393 TCCTTTTCTTCATAGCAATAGGCAGTCTAAAGCAAA /4I7=>B@I>II4IIIIIAIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1064:1692 99 chr7 38028941 60 36M = 38029241 336 GGAAAAAGGCAAGTAGAAAAACTGGCAGTTCATAGA IIIIIIIIIIIIIIIIIIIIIIIIIIII'IB,I,6@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1064:1692 147 chr7 38029241 60 36M = 38028941 -336 CTCAGTGCTTCCAGCTCTGTGTTTGTGCCTTGAGAA II0EBIIICIIIIIIIIIIIII7>IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1303:644 83 chr25 16421488 60 36M = 16421138 -386 CAGCCACTAGTATTATGTTGTCTGGACCAGTTTAGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1303:644 163 chr25 16421138 60 36M = 16421488 386 CCTTAAGTGGCTACCATATTGGACAGTACAGAGTTG IIIIIIIIIIIII?I-I;II-II=1506.*,@;/@* XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1393:882 99 chr5 96665666 60 36M = 96666054 424 GGAATACAAAGATTGTACAAAAAAGGAAAAACAAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1393:882 147 chr5 96666054 60 36M = 96665666 -424 TGTTGTAAAACTAGGACTGTTGATAGTAATAGGGAT 7IIIAIIIIIHGIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1587:587 83 chr5 91363358 60 36M = 91363042 -352 TTTGATGGCTCCATCTTTACTATACCTGATGACTAC IIGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1587:587 163 chr5 91363042 60 36M = 91363358 352 CTATAACTGAGAAGCCATGGGGACTTAAATTTTTGA IIIIIIIIIIIIII:IIIIIII4=II<;IIIIII0- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1456:712 113 chrUn 108927053 0 36M = 89549435 -19377618 GACATGCCCAAATCACCAGCCGGGTATGCCAGAACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1213 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1456:712 177 chrUn 89549435 0 36M = 108927053 19377618 AGCCGGCAGGTGATTTTTGCGTGTCCGGCAGGTGGT (F=5II:1IA;I:?I42IIII?IHIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1327 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:881:447 99 chr26 31931907 60 36M = 31932254 383 GAGTATTTGTGGATGTTTTTAAGAGAGACTTGCTAC IIIIIIIIIIIIIIIIIII'IIIIICIFEII&3I)( XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:19G16 +HWI-EAS91_1_30788AAXX:1:2:881:447 147 chr26 31932254 60 36M = 31931907 -383 TTCCCAGCTGGTCCATGAATGAGCACACACCTCAGG ?3GIIIII0II7IIIIIIIDIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1291:1095 99 chr11 13569749 37 1S13M1D22M = 13570208 495 GCCTTGTAGGAAATGGTTGGGGTCGGAAGTGGGCTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII8II XT:A:M NM:i:3 SM:i:37 AM:i:37 XM:i:2 XO:i:1 XG:i:1 MD:Z:13^G12G5C3 +HWI-EAS91_1_30788AAXX:1:2:1291:1095 147 chr11 13570208 37 36M = 13569749 -495 TATGTTCAGTTTGTGAAGTCTGACATTGAGAAGACA G<)<FA17?-4FI8I<II/IIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:20G15 +HWI-EAS91_1_30788AAXX:1:2:732:1250 97 chr1 104794356 37 36M chr8 54025760 0 GAACAATAAGTAATTGAACAAACTTAATGCTGATTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:732:1250 145 chr8 54025760 37 36M chr1 104794356 0 GGTAGGGTGAATAAAGAGCAAAACCCAAAGTTATTG I8+:III9III?IIIIII>IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1319:1404 113 chrUn 99628244 0 36M = 88510367 -11117877 TGGGGCCCAAGTCGCCCTTTGGAAAGAAGCCTGCAC 5IIIIEIIIII3IIIIII=8IIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:191 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1319:1404 177 chrUn 88510367 0 36M = 99628244 11117877 CTGGCTGAAGCAGAACTTCTGCTCTGGGTGTGCTAC I'IDIIII>IIIII;IIAIIIICI8IIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:277 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:802:381 99 chr2 73194907 60 36M = 73195225 354 GATATGTGTTTAAGATATGAATATCATTCTGGGCCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:802:381 147 chr2 73195225 60 36M = 73194907 -354 TGATACAGATGTATCTATATGTGTATATATTCACAT ADB9?>IAIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:857:654 99 chr2 116162696 60 36M = 116163071 411 GTCTCTCTTGTGTTGGTGAACATAGTCGGCAATGCA IIIIIIIIIIIIIII+IIIIIIIIIIIIII@II&IH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:857:654 147 chr2 116163071 60 36M = 116162696 -411 TTAATCAACAGATGAATCAAGTCAGAAGAATATAAT >DII7)IIHIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:465:864 81 chr2 117724814 0 36M chr4 77925564 0 CTAAAAGCAGCCACGTTACTCACAAACCTTTAAAAC &/I*IIE>II+3I2III$>IIIIIIII%IIIIIIII XT:A:R NM:i:2 SM:i:0 AM:i:0 X0:i:4 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:3C13C18 +HWI-EAS91_1_30788AAXX:1:2:465:864 161 chr4 77925564 37 36M chr2 117724814 0 GACATAAAGTTACCCCAAGTCAGATTACTGTGAGTG IIIIIIIIIIIIIIIII5III9IIIIIII.407/6+ XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:3G32 +HWI-EAS91_1_30788AAXX:1:2:658:243 97 chrUn 113568909 0 36M = 36797415 -76771458 GCAAAGGTAAACGCTCTGGAAGAGGCAATATTACAG IIIIIII6IIIIIIIIIIIIIIGIIII4IIIIII79 XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:5 X1:i:6 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:658:243 145 chrUn 36797415 0 36M = 113568909 76771458 TCCTATAGATGGATCTGTGGGACTCCTCTTAAGGTA /$5HIIIII=IIIIIIIIIIIIIII4IIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:9 X1:i:4 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1255:808 113 chrUn 36810558 0 36M chr20 25300425 0 ATAAATATTCTTGTGTTCGTTTCTTACTTCCTTATC IIIII=IIFIIIIGIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:37 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1255:808 177 chr20 25300425 0 36M chrUn 36810558 0 ATTCCTTTGTCTTTTAGATTGTAGAGCTAACGGTCC >72AII<<<C75-7/IIII-IIGIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:47 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1597:1214 97 chr20 18073443 23 36M = 18073809 402 GAATTGAAGCAGCAGCCGCTACTCTCTCAATGAAGG IIIIIIIIIIIIIIIIIIIIIIIIIIII)9II?IIF XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:17A18 +HWI-EAS91_1_30788AAXX:1:2:1597:1214 145 chr20 18073809 37 36M = 18073443 -402 TAATTCACAATGATTGAGCTTTCCTAACTGGTACAA -II19*I?II0IIIIIIII>IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1575:907 99 chrM 6329 60 36M = 6677 384 GACTAGCCACCCTGCACGGAGGAAATATCAAATGAT IIIIIIIIIIIIIIIIIIIIIIII@IIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1575:907 147 chrM 6677 60 36M = 6329 -384 GCTATTCTGATTATCCAGACGCATATACAACATGAA 31FI85HEIG?HI;IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1628:849 83 chr22 28809267 60 36M = 28808899 -404 TCGGTGGTGAGAACATTTAAGATAGACCCTCTTAGC BIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1628:849 163 chr22 28808899 60 36M = 28809267 404 TCACATTTCCAGCAGTTCTTGCTTACATTTTTGCTG IIIIIIIIIIIIIAIIIIIIIIII<I3IIIII/II, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1380:710 99 chr4 96849101 60 36M = 96849436 370 GAAGCCAGTGAAGAGAAAGCTGATGGAAGAGCAGAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIHI XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:11G24 +HWI-EAS91_1_30788AAXX:1:2:1380:710 147 chr4 96849436 60 31M1I4M = 96849101 -370 AATGTGCAAGCAATAGGTTTAAAGCTATCTTAATTC IIFI,I9IFCIIIIIIIIIDIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:31T3 +HWI-EAS91_1_30788AAXX:1:2:936:40 99 chrX 97162256 60 36M = 97162556 336 GATAAGGCAATAAGAGAGGAAAAGAAACCAAAGATA IIIIIIIIIIIIIIIIIII9IIIIIIIIIF2=I7I6 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:936:40 147 chrX 97162556 60 36M = 97162256 -336 AATTTTCCACTTACCTTAATCATAAGGCATGGTACT IIIIIIII9I7=DII7IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1171:1540 83 chr29 19562868 60 36M = 19562529 -375 TCTGACACTGTTCCTATGGATGGGAAAGGTGAGTGC CIAIIIIIIIIFIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1171:1540 163 chr29 19562529 60 36M = 19562868 375 GTTAAGACAAGGATTAGAAAAGAAGAAATTTACTTG IIIIIIIIIIII?IIII?IDGIIFI=?GIIIIIIIC XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:547:661 99 chr3 102791916 60 36M = 102792219 339 GTATTTTGCAACACAACAGGACAAACTCCCAAACGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIII3IIIGB XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:547:661 147 chr3 102792219 60 36M = 102791916 -339 AGGATCCCAACATCAATGTGATCTCTGCCTTGCCTG @??E<-99IBII7III>I=IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1680:771 81 chrUn 111254445 0 36M = 32808657 -78445824 GGTGAGGAGGAAACGTGACACAGGCGTGCCTGACAC II3IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:11 X1:i:46 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1680:771 161 chrUn 32808657 0 36M = 111254445 78445824 GATACATGTGTGGAAGACATGTGGACATGCAGGTGT IIIIIIIIIIIIIIIIGIIIIIIIII7DIA4II75* XT:A:R NM:i:2 SM:i:0 AM:i:0 X0:i:5 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T2C32 +HWI-EAS91_1_30788AAXX:1:2:572:1135 81 chrUn 85002185 0 36M = 88457439 3455218 AAGAGATGTTCCCGGTAGGTTGTAAGAGCACTGTGC IIIIIIIIIF,G3IIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:61 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:572:1135 161 chrUn 88457439 0 36M = 85002185 -3455218 AGTATCACACCCAGAGCAAAAGTCCTACTTCAGCCA IIIIIIIIIIIIHIEIIIIGIIIIIIHIIII@DII8 XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:5 X1:i:40 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1724:791 73 chrUn 110980507 0 36M = 110980507 0 GACACGCCAAAATCACCTGCCACCTACGCCAGAACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIII6I>>II XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:346 XM:i:1 XO:i:0 XG:i:0 MD:Z:22G13 +HWI-EAS91_1_30788AAXX:1:2:1724:791 133 chrUn 110980507 0 36M = 110980507 0 CCAAGTGTTTCTTGTATAAGTGGCAGGTGATTTTTG IIIIIIIIIIIIIIIIIIIIIIII<II3B0IIII%. +HWI-EAS91_1_30788AAXX:1:2:536:781 97 chrUn 48448515 0 36M = 58710467 10261988 GAGGAGAAGCAGCACAGGCTCAAACTCAGCCTTCAG IIIIIIIIIIIIIIIIIIIIIIIIIIIGIIIIII<I XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:5 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:536:781 145 chrUn 58710467 0 36M = 48448515 -10261988 AATGGAGTACAAGCTAAATAAAACAAAACAGATGGT %?%5;282I$IDI9?III;IIIIIIIIIIIIIBIII XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:3 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0C35 +HWI-EAS91_1_30788AAXX:1:2:685:695 99 chr4 47670811 60 36M = 47671149 374 GTTAGGTCACTTGCAGTGTTTTGTTATTGCAAAAAT IIIIIIIIIIIIIIIIIIIIIIIIIIII=IIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:685:695 147 chr4 47671149 60 36M = 47670811 -374 GCCTTTCAATATTTTAGGACACTATTTACCCCATAT :7G5I6<IIHIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1696:1315 99 chr8 84751913 60 36M = 84752293 416 GGAACTTACATGAACTTGATAAAGGACATGGGATGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII?III XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1696:1315 147 chr8 84752293 60 36M = 84751913 -416 TGCCAGGCTGTTGACCAAAACGGACGTAAGTCCCCC +4?5?II;4>=EIII7IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1485:821 83 chrM 4818 60 36M = 4479 -375 ACGACTAACCTACTCCACCTCACTGACCATATTCCC IIIII=IIIIIIIAIIGIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:12T23 +HWI-EAS91_1_30788AAXX:1:2:1485:821 163 chrM 4479 60 36M = 4818 375 CTCGTCAATCGCGCATATAGGATGAATAACAGCTGT IIIIIIIIIIIIII1I1I>II5EGI3E4I144/0+% XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:961:1675 113 chrUn 105496983 23 36M = 103020472 -2476511 TTGCTTCCAGGTCTTTTGGAAGCTAAGAAACAACTC FEIII2GIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:269 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:961:1675 177 chrUn 103020472 0 36M = 105496983 2476511 CTACTTCAGCCAGATGAGGCCTGCAAAGAAACTGCG <+BI1+8II88III.IIIIIICI8IIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:315 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1733:1224 99 chr14 77003341 60 36M = 77003670 365 GATTCTTCTGAGTCAATATACAGCAAAGGATTTTCA IIIIIIIIIIIIIIIIIIIIIIIIIIIII&IIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1733:1224 147 chr14 77003670 60 36M = 77003341 -365 TGTGCCTAGTGAAATTTATCAATTTGGGCAGCAATA ICIII<IGIIIIII>IIIDIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1706:1040 97 chr3 80531552 37 36M chr12 17642145 0 GAAACCTGAGTTCTCTAATTAAAACTTTTTCATGTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1706:1040 145 chr12 17642145 0 36M chr3 80531552 0 CTTCTCCCCAAAGCCCCCAAGCACATAGTTGTATAT 99=723I9IIII2IIIII'IIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:166 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:517:1493 99 chrX 85415259 60 36M = 85415586 363 GATTGATTATGGTGCTGAGTATTTGGAATCCGGGCA IIIIIIIIIIIIIIIIIGIIIII&;&FIIII0+%EI XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:23G12 +HWI-EAS91_1_30788AAXX:1:2:517:1493 147 chrX 85415586 60 36M = 85415259 -363 ACATATTTATATGTCTTCTATTTTAAAAAATGTTGA H$IIIIBIIIIIII<IIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1038:889 99 chr23 31811283 60 36M = 31811637 390 GACATTCCTGTTGGCTCTTATGGTAATTGTAGGAAG IIIIIIIIIIIIIIIIIIIIIIIII6II1II;I0IH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1038:889 147 chr23 31811637 60 36M = 31811283 -390 CTTATATACATATGGTTCTCCTTTACAAATTCTCTT G4:6BI;III;IIIIIFIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1711:1761 81 chrUn 101112854 0 36M = 89880672 -11232218 CACGTGACGGCCATGCCTGAACCACCTGCCGAGCAC (/5($0IIFIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1024 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1711:1761 161 chrUn 89880672 0 36M = 101112854 11232218 CCAGAAACACCTGTCGGACACGTCAAAATCACCTGC IIIIIIIIIIIII<IIIIIDII9IIIII*IDII41I XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:62 XM:i:1 XO:i:0 XG:i:0 MD:Z:22C13 +HWI-EAS91_1_30788AAXX:1:2:1551:1555 99 chr19 8503309 60 36M = 8503693 420 GTGGGGCTGAAGCTGAAAATATTTTAGCAACTAACA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII>II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1551:1555 147 chr19 8503693 60 36M = 8503309 -420 CTGTTCCCATCCTATCCATTGTGAAAAGTCTGGCTT G2+I7@=II?IIII8IIII=IIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:28C7 +HWI-EAS91_1_30788AAXX:1:2:1107:657 113 chrUn 99140233 0 36M = 101154130 2013897 CCAAAGAGCTGGAAGCAAGATGCTGTGGGGCGCAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:67 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1107:657 177 chrUn 101154130 0 36M = 99140233 -2013897 CTTCTGCTCTGGGTGTGCTACTTTGCCCTAGAGCTG II7IIII0IIIIIIIIIID)IIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:27020 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1567:858 83 chr4 54301141 60 36M = 54300799 -378 TTTTTTCTTTCCAAAGGGCCAGTTTACTAGCACGCC I?I7IDIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1567:858 163 chr4 54300799 60 36M = 54301141 378 CAGTGTCTACTGTATCATATGAACAATTTTTCAAAA IIIIIIIIIIIIIIIIIIIII5CD82IIIII>1H1: XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1246:300 97 chr17 11723020 23 36M = 11723360 376 GTTAGCCCTGAGCTAACATCTATGCCAGTCTTCCTC IIIIIIIIIIIIIIIIIIIIIIIIII4IIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:91 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1246:300 145 chr17 11723360 37 36M = 11723020 -376 TGTGGTCAGAGCATATGGGCATACCTTGGAGATATT ;I-GIII<I=I%IIIDIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:11A24 +HWI-EAS91_1_30788AAXX:1:2:941:1511 113 chr14 6519689 37 36M chr2 37657649 0 AGGAGTGAAACCACAAAACCCTAGGGACCCCAACCC II7IBIIII<&IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:941:1511 177 chr2 37657649 37 36M chr14 6519689 0 CAGACAAGAGGTACGGAAACTCTGATCAGTTACGAT 7IIB?IIIIDIGI4IIIIFIIICIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:33A2 +HWI-EAS91_1_30788AAXX:1:2:1273:1881 97 chr7 38579227 23 36M = 38579335 144 GGTGCCATGTCCTCACCCGGGATCCCAACTGGTGAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII=EIE XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:22 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1273:1881 145 chr7 38579335 25 36M = 38579227 -144 AAAAATGTCAAACAACCATCAACATTATCCATTTCT 'I%II7II0III;IIIII<IIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:23 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C1C33 +HWI-EAS91_1_30788AAXX:1:2:756:98 99 chr3 110321867 60 36M = 110322131 300 GGCATGGAAATTTTACCTAGTTTAAGACTTAAATGG IIIIIIIIIIIIIIIIIIIIIIIIII=IIIII5III XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:756:98 147 chr3 110322131 60 36M = 110321867 -300 ACGTGATCATGTGTAATGTGTTCCATATTAACACCT EBI5II2II8IIIIIIII9IIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:21G14 +HWI-EAS91_1_30788AAXX:1:2:1672:1877 83 chr24 18069525 60 36M = 18069185 -376 AGGCCTTGACCCACACTCTTGATATGTCTGAGAGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1672:1877 163 chr24 18069185 60 36M = 18069525 376 GTTTATTTTCACACTGGTTTGATTATTCTTTGCTCA IIIIIIIIIIIIIIIIIIIII;IIIIIGIII,II=. XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1697:1291 113 chrUn 65983007 0 36M = 117262347 51279340 GGTACGCCAGAACCACGTGGCGGACACTCCGGAATC IIIIGI@IIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:525 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1697:1291 177 chrUn 117262347 0 36M = 65983007 -51279340 TACCGGATTCTCCGGCATTTGGTTCTGGCACCTCTG +$IIFI?I+I;IIIIIIBC4IIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:6 X1:i:242 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:757:886 83 chr14 83781200 60 36M = 83780845 -391 TCCTGGAATTCAGACCTAGATCTACTAACAATTTCC I/IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:757:886 163 chr14 83780845 60 36M = 83781200 391 TAAGGGTCAATGGAGTGCTCAACATATGCAGCTAAG IIIIIIIIIIIIIIIIIIIIIII1IGICIICB@4,@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1272:658 99 chr28 9855387 60 36M = 9855722 371 GAAAAATGGGCCGGCTGAGCGAGCAAAGGGCTGAAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII:<I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1272:658 147 chr28 9855722 60 36M = 9855387 -371 AGATAAGGAAACTGAGGTTTATAGATGTGGAATAAT III;IIIIIII7<IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:915:1733 83 chr7 88339997 60 36M = 88339620 -413 ACCCGGACCACCGCAGCATCTTCCCAACTAGTTTCC 1IIIIAIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:915:1733 163 chr7 88339620 60 36M = 88339997 413 GTTGGGGCAAAGGATTTTGGTTTCTTCTTGTAAGCC IIIIIIIIIIIII8IIIIIIIIIGIIDII4IH00@1 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1386:1447 99 chr6 13910088 60 36M = 13910434 382 GACATAAGATAGATGAATAATGAAGCTTAGCAGATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIICIAII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1386:1447 147 chr6 13910434 60 36M = 13910088 -382 TCTGGAAACATCTTTCCTATAATTTCTTGATTATAG D82DEIIEIIIICIGIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1308:1660 81 chr15 70146377 37 36M = 70146024 -389 AATGGTCCCTCTATTGGGCTTTGTTTCATATTTTCC EIIIDIIIIIIIIAI>>IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1308:1660 161 chr15 70146024 23 36M = 70146377 389 AAGTTTATTTTTTAGAAGAGTTTTAGATTTACAGAA IIIIIIIIIIIIII6IGDI>IIIII;6IIIIII/GI XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1458:254 81 chrM 15392 23 36M = 15004 -424 CCCAAGGACTATCAAGGAAGAAGCTCTAGCTCCACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1458:254 161 chrM 15004 23 36M = 15392 424 TACTTCCTGTTTGCCTACGCCATCCTACGCTCCCTT IIIIIIIIIIIIIIIIIIIII/IIII5IDI@II%H5 XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:2 XM:i:1 XO:i:0 XG:i:0 MD:Z:33A2 +HWI-EAS91_1_30788AAXX:1:2:1181:288 99 chr4 52819133 60 36M = 52819453 356 GGTGAGACTGTTCTGGTAAGCATGGAAATTATATTT IIIIIIIIIIIIIIIIIIIIIIIIIHIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1181:288 147 chr4 52819453 60 36M = 52819133 -356 GAAGACAATCAGGCAGAGAGAGCAAATTCTCTCTGA AIIII,II1GIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:781:1660 97 chr1 130526248 37 36M chr7 83046951 0 GAGGATATGATAGTAAATTGGTTTAATGTTGAGTGG IIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIII;& XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:781:1660 145 chr7 83046951 37 36M chr1 130526248 0 TTCTCTACATATATATATATGAAAGCAGGAAGCAAG ?;=7>%*'IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C29 +HWI-EAS91_1_30788AAXX:1:2:1535:1441 65 chr8 34292953 0 36M chr11 11201807 0 ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC II&IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:8 X1:i:49 XM:i:1 XO:i:0 XG:i:0 MD:Z:1G34 +HWI-EAS91_1_30788AAXX:1:2:1535:1441 129 chr11 11201807 0 36M chr8 34292953 0 CCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCC IIIIIIIIIIIIIIIII3IIIIIIIIIIIIHIIIII XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:6 X1:i:29 XM:i:1 XO:i:0 XG:i:0 MD:Z:12C23 +HWI-EAS91_1_30788AAXX:1:2:1329:349 99 chr5 22098876 60 36M = 22099202 362 GTCTCAGAAGCAGCCACGAAAGTTGTTGTCTACCCT IIIIIIIIIIIIIIIIIIIGIIIIIIIIIIIIIII? XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1329:349 147 chr5 22099202 60 36M = 22098876 -362 TAGGGATATTTGTGTCTGGTTAAAAAAAAAAGAGTC +I?IIIII/6IIII8?IFIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1364:1876 65 chr19 45305486 0 36M chrUn 46111001 0 GTTTTAATAAATTTGGCATAATTATTTACATAAGTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIII@II'GI XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:25 X1:i:26 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1364:1876 129 chrUn 46111001 37 9M1D27M chr19 45305486 0 TACAGACTTGGATATGACTTGGCAACTTTTTAGGAG IIIIIIIIIIIIIIIIIBII+EA':;)III4$<1>+ XT:A:U NM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:9^G21G5 +HWI-EAS91_1_30788AAXX:1:2:613:1231 99 chr22 24318862 60 36M = 24319164 338 GAGGTAGCTGGGACAGATCATATAAGGCCTTGGACA IIIIIIIIIIIIIIIIIIIIIIII>)<IIII:;IIA XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:613:1231 147 chr22 24319164 60 36M = 24318862 -338 AATAAAACACATGTTCAGGAAAATTCATAGCAATTC I'DIIII*I2IIIFI4IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:1C34 +HWI-EAS91_1_30788AAXX:1:2:1768:603 99 chr2 14142826 60 36M = 14143134 344 GCTCACATGTTTGTTATCTGTTGTCTCCTACCTTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:3T32 +HWI-EAS91_1_30788AAXX:1:2:1768:603 147 chr2 14143134 60 36M = 14142826 -344 TCACTGGCACAGAGAGGGAAACTGAAGCCACAGGGT I9@>'IIGF?EIIIIIIIIIII.IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1125:594 83 chr25 19401374 60 36M = 19401024 -386 GTGCTACGGTTATTTTCCTTTGGAAGCTTTGGAAGC IIIIIGIIIIIIIIF9IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1125:594 163 chr25 19401024 60 36M = 19401374 386 TTGTGCTCTTGTCATCACGGATTCCCGTTCTCTGTT IIIIIIIIIIIII8II@IIIGIIIIIIIIADII?II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1002:1788 81 chr20 19128311 37 36M = 19128151 -196 AATACCCATTACAGGGTGGCCATCCGGTTAATTTGC II>IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5A30 +HWI-EAS91_1_30788AAXX:1:2:1002:1788 161 chr20 19128151 37 36M = 19128311 196 GACCAGAAATCAGGAAATAGTAGAGTCAATTTGCTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1747:849 113 chrUn 93056639 0 36M = 38804407 -54252232 AAACAACTTGCTCTGCACAGGGCTCTTCCAGCCTCC IIIIIIII<IIHIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:19 X1:i:5 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1747:849 177 chrUn 38804407 0 36M = 93056639 54252232 CATGTAGGACACGGCAGAGCAGAAGTTCTACTTCAG ?I?F?IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:600 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1344:59 99 chr22 35581518 60 36M = 35581882 400 GTGTGGAAATGCAGAATCTCAGAATCACCCTGGACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1344:59 147 chr22 35581882 60 36M = 35581518 -400 GAACTGGCAGGGAGAAGGATTATGACAGTACGTAGA IIID.II36IIIEIIIIIIIIIEI<IIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1049:521 81 chr2 116757123 37 36M = 116756893 -266 TTCAAACTAGACCTACTCCAAGTTACATGAACCCTC IIIIIIGIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1049:521 161 chr2 116756893 37 36M = 116757123 266 TGGAATTGTCATCGTTAGCTTCAAGTCATCATGTGG IIIIIIIIIIIIIIIII?IIIDIIIII86I*IG9@I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1743:1274 83 chr17 49657748 60 36M = 49657391 -393 CACAGATAACATTGTACCCGGTGTCCCAAGTCACAC IIAIIIAIIIII<IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1743:1274 163 chr17 49657391 60 36M = 49657748 393 AAGTGCAAGGTTATATGCATTTAGTACATTTTCTCA IIIIIIIIIIIIIIIIII=IIIIII;I7IIIIII<9 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:679:1764 99 chr16 29370791 60 36M = 29371091 336 GAATAATCAGTCCATCTCTTCCTCATTCATTTTAAA IIIIIIIIIIIIIIIIIIIIIIIIAIGIIIIIII2< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:679:1764 147 chr16 29371091 60 36M = 29370791 -336 TTATGTATTGCTTTTCGTTATCTATTATTTCCACCA GI6ID1IICEI?7III8III>IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1280:1230 99 chr2 45343738 60 36M = 45344094 392 GCGATGAGCTGAAATTGGTTATTGGTTATTGATTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIII'.IIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:2A33 +HWI-EAS91_1_30788AAXX:1:2:1280:1230 147 chr2 45344094 60 36M = 45343738 -392 CCCCAACTTGTTTGTACAAATCTGCACCTTCTCATG 2/.IIIH;IIHIIG9IIIII4IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1182:845 83 chrX 52845727 60 36M = 52845385 -378 GTTGAGGAGGATAGTAGGCAGGACTTAAGCTGAACC I3=IIIIIII7IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1182:845 163 chrX 52845385 60 36M = 52845727 378 CAGGGTAACTTCTCAGCTCAGCCACTGTGGCCTTGA IIIIIIIIIIIIIIIIIII?III5I?I9IIII9A;? XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1011:1468 83 chr3 21100459 60 36M = 21100119 -376 GAGTTGCTGAACTGTCCACCAAAAGCTTTTTCAAAC IIIIIIIGIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1011:1468 163 chr3 21100119 60 36M = 21100459 376 AACAGTCTCATTTTCTGCTCCCAGTGCACACTTGTT IIIIIIIIIIIIIIIIIIIIII?IICE1E9IGEC:I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1498:369 99 chr7 34226931 60 36M = 34227262 367 GGAGGGGAGGGATTACTAGGAAAACGCACTCTGCCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII8 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1498:369 147 chr7 34227262 60 36M = 34226931 -367 TGGGGAAAGTCAGCATCTTTGTCTTATTCCAGTGCT &5I@III9I&IBIII/I7IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1652 97 chr3 88485311 37 36M = 88485461 186 GAGGTGAACGTTAGATCTTTTGTTATCCTCTCGCAG IIIIIIIIEIIIIIIIIIIIIIIIIIIIIIII*H:+ XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:8T27 +HWI-EAS91_1_30788AAXX:1:2:1166:1652 145 chr3 88485461 37 36M = 88485311 -186 ACTGAGCTCATCCAGAGAGCATTGTTATTTTGGATA I9IIIIGIAHIG8IIIIICIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:19T16 +HWI-EAS91_1_30788AAXX:1:2:1151:158 83 chr5 98799959 60 36M = 98799642 -353 GCAGAGTTAGAATCTGAGATAGGGTGGTACTTACTC IIIIIIEIIIIIDIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1151:158 163 chr5 98799642 60 36M = 98799959 353 CATGGGCAAGCCAGCACCGGCTCACAGGTTCACTCC IIIIIIIIIIIIIIIEIIIIIII+I2II:BI0I4II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1336:522 73 chrUn 10633011 0 36M = 10633011 0 GTCCACAGTCCACAGTCTACAGTCCACAGTCTACAG IIIIIIIIIIIIIIIIIIIIIIIIIII;IIII@I7= XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:8 X1:i:18 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C18 +HWI-EAS91_1_30788AAXX:1:2:1336:522 133 chrUn 10633011 0 36M = 10633011 0 TGGTGGAGACTGTGGACTGTAGACTGTAGACTGTAG IIIIIIIIIIIIIIIIIIIIAIIIIIIII?FIA?,I +HWI-EAS91_1_30788AAXX:1:2:1212:1439 97 chr6 36991835 37 36M chr19 12811610 0 GGGGCCAGCCCCGAGCATCTTTTCATGTGCCTATTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII6 XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1212:1439 145 chr19 12811610 0 36M chr6 36991835 0 TTAGTCTGATGAAGTCCCATTTGTTTATTCTTTCTA IGIII/>II<IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2888 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:671:531 99 chr21 33825320 60 36M = 33825661 377 GTAGTTTAAGAACATGCTTAACACGATTCATATTTT IIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIBIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:671:531 147 chr21 33825661 60 36M = 33825320 -377 TGCACATTTAAATTTTTATTTTTATTGGAAATTTGA @I=:8IIIIIIICIIIIIIA@IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:627:1022 99 chr7 94024834 37 35M1S = 94025106 308 GTAGAGATGGGAAACAGGCAGTGGGTTTTCACATAT IIIIIIIIIIIIIIIIIIIHII0II1$III&I=I7) XT:A:M NM:i:2 SM:i:37 AM:i:37 XM:i:2 XO:i:0 XG:i:0 MD:Z:26G3C4 +HWI-EAS91_1_30788AAXX:1:2:627:1022 147 chr7 94025106 37 36M = 94024834 -308 AGAGTCACATTTGGTTTAAATGAAAGAAAGAGCTTT II/I-I'2D@IIIIIIII1IGIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:18C17 +HWI-EAS91_1_30788AAXX:1:2:1379:855 113 chrUn 111017045 0 36M = 73035352 -37981693 GCATCTTGCTTCCAGCTCTTTGGGAAGCTAAGAAAC IH.7I=FII@IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:43077 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1379:855 177 chrUn 73035352 0 36M = 111017045 37981693 CGGTAGGCTGTAAGAGCACTTTGCAGAGCGAGTTGT :GI97III+I.IIICIIHI9I?IIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:76 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1396:1893 99 chr21 13322203 60 36M = 13322511 344 GTCTTGATTGTTGGATCGGGAGGCAGAGGCCATATA IIIIIIIIIIIIIIIIIIIIIIIIII?IIII@I;ID XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1396:1893 147 chr21 13322511 60 36M = 13322203 -344 AAGAACCATTGTGGACAGAGATGGGGAGAAATAGCC IIII4-III4I1IIDIIIIII8IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:614:163 99 chr8 45341890 60 36M = 45342167 313 GACGCAACAAGATATGATGAGGTTGACGTTAGACAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:614:163 147 chr8 45342167 60 36M = 45341890 -313 ATTCCAAGTAGATTTTTAAATGAGAAGGAAAATGCA I;DH:III?IIII?II?IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:827:710 97 chr18 24445579 23 36M = 24445928 385 GGTGAGAACTCTTAGGATTAACTCTCCTAACAACTT IIIIIIIIIIIIIIIIIIIIIIIIIIII8IIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:827:710 145 chr18 24445928 37 36M = 24445579 -385 GACTGAATAATATTCTATTGTATATATATCACAACT <9'.@IIIII;III,IIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1716:457 99 chrX 86974877 60 36M = 86975223 382 GCTGTGTATTGTGAGAGCCTCTGTATGGAGGAGAGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIHII;I;II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1716:457 147 chrX 86975223 60 36M = 86974877 -382 CTCTTGGGCCTCATCCCATATCTACAGAATGAGAAT >+;+.II;@I4FIFIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:625:831 99 chr15 58434315 60 36M = 58434653 374 GTAGAGAACCAAGAGATGGCTTTTGGAGAGGCCATC IIIIIIIIIIIIIIIIIIIIII+C'&II5DI=I&A) XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:22G13 +HWI-EAS91_1_30788AAXX:1:2:625:831 147 chr15 58434653 60 36M = 58434315 -374 AGATGAAAAACATAATAATAGCTAACATTCAGCGAA III4III%II%IIIIIII:IIIIII;II@IIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:7C1G26 +HWI-EAS91_1_30788AAXX:1:2:1064:853 81 chr14 85260468 37 36M = 85260110 -394 GAACTTGATTCATACTAAAGCATCAAAAATTTAACC IIIIFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1064:853 161 chr14 85260110 23 36M = 85260468 394 AGTTGTTTTCCTTGAAGCGACAAACTTGCTTTGTTC IIIIIIIIIIIIIIIIIII>IIF8EGI9IIII?FI3 XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1703:699 97 chr10 59051046 37 36M = 59051391 381 GAGTTGGGTGAAAGCCAGACTGCCAGAGTTAAGGAA IIIIIIIIIIIIIIIIIIIIIIIIII4IIIIIII;B XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1703:699 145 chr10 59051391 23 36M = 59051046 -381 CCCTAATTACCTCCCAAAGGCCCCATCTCCAGACAC =II6II6/7II5IIIIIIIIIIIIICIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:2 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:996:641 83 chr9 66450187 60 36M = 66449847 -376 GCGCATTTACACAGTTCTGACCAGGGCACAACGATC I@III?IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:2A33 +HWI-EAS91_1_30788AAXX:1:2:996:641 163 chr9 66449847 60 36M = 66450187 376 ACCAAAATTAACAAGAGAAGAATGACTAAACATTGG IIIIIIIIIIIIIIICIIBIIDIIIIIIIDIADII8 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:982:1288 113 chrUn 77283145 0 36M = 29909208 -47373937 GCTTCAAGTGAGGCTGACCTGTGGTTCAAGTGTGAC I)<48III,IIIIH?I7II@I9IIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:331 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:982:1288 177 chrUn 29909208 23 36M = 77283145 47373937 GAATTACACCCGAACCATGTGTGAGCCATGCAGCAA +I<74I23II/5IHIII3I.IIIIII<I4IIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:67 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:937:1712 83 chr1 175096252 60 36M = 175095881 -407 AGTTATATACTTAAGACTTGTGCACATTTCTGTACC IIIIIIIIII;IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:937:1712 163 chr1 175095881 60 36M = 175096252 407 TCTGCAAATAACCCGAACGTCCCTCAACAGTAGAAT IIIIIIIIIIIIIIIF4IHDIII9I-1G6B7<I34I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1417:1368 99 chr26 35345110 60 36M = 35345459 385 GTTTTCCTATTAATAAGAACCATGTTTTCACCTTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1417:1368 147 chr26 35345459 60 36M = 35345110 -385 ACACACCACATGAGTCCATTGATATGAAGTTCTGCA C>D5)B4GIIGI9I7III<?8IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1571:1100 97 chr23 49883487 23 36M = 49883807 356 GCTTTATTGAGATATAATTGATATACCATAAAATTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII?III XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:6 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1571:1100 145 chr23 49883807 23 36M = 49883487 -356 ATGTTGTGGCATGTGTCAGTACCTCATTCCTTTTTA =3I.6I2IIIDDI?IGIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:6 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1057:385 99 chr21 34924906 60 36M = 34925247 377 GGTGTCATATTGTCTTTAAAATAACTCCCTTTTCCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1057:385 147 chr21 34925247 60 36M = 34924906 -377 GTGCTCAGCACAAATCCTCAGCATTCAGTTTCTGTT I:HBI@III?IIIIIIIIGIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1417:1017 99 chr8 91109956 60 36M = 91110326 406 GTTTGAAAACTTAATGCAAGAAAAAGAATTGTGAAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII?I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1417:1017 147 chr8 91110326 60 36M = 91109956 -406 CACCGTGCTGTGCGGACAGAGGGTCCCAGTGAGAGC I+HII4II7I.IIIIIIIIIIII?IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:956:1978 99 chr2 19840615 60 36M = 19840942 363 GGGAAAAATTTTGATTCCAGTGTCTTGGAGCCTTTT IIIIIIIIIIIIIIIIIIIIIIIIII-IIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:956:1978 147 chr2 19840942 60 36M = 19840615 -363 ATTTTTGTCAAATATCAGGAAGGACAAAGAAACAGT III@IIII<III;I>?IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1476:130 99 chr4 47283762 60 36M = 47284140 414 GTGGACTGAATTGCGTATACTCAATTCCTATGTTGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1476:130 147 chr4 47284140 60 36M = 47283762 -414 CCCACTCTGACTAATACAGAAGGATTGTATGGAAAC G+>BA67*IDIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1456:1961 83 chr3 16383313 60 36M = 16383052 -297 GGTCCCAGAAGACCTGGGAGGTTGGTTATGCACGTC II@IIIIIIIIDIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1456:1961 163 chr3 16383052 60 36M = 16383313 297 AGCTAAACATTAAGGGACTTCAATGGGGAACAGACA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:917:939 97 chr27 29105573 23 36M = 29105894 357 GTGAACGTCTGTGCCAATCTTCCTCTATTTTATATT IIIIIIIIIIIIIII=>IIIIIIIII/IIIIHIII5 XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:7 XM:i:1 XO:i:0 XG:i:0 MD:Z:35G0 +HWI-EAS91_1_30788AAXX:1:2:917:939 145 chr27 29105894 37 36M = 29105573 -357 ATGATGTATTGTAAGAAAAAGTCTGTCTTACAAATA G5E>,IIIF+IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1034:1078 113 chrUn 108963094 0 36M = 117205058 8241964 CTCTAGGGCAAAGTAGCACACCCAGAGCAGAAGTCC %=%IIIIIAIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:26588 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1034:1078 177 chrUn 117205058 0 36M = 108963094 -8241964 ACAACTCGCTCTGCACAGTGCTCTTACAGCCTACCG I&III-IIIIBII@IIII>IIFIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:31725 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1557:1261 83 chr15 52394665 60 36M = 52394349 -352 CAGGTGGGTTGAAGATGGAGCCACAAACAAGGGGGC %FII'III.%IIIII=IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1557:1261 163 chr15 52394349 60 36M = 52394665 352 ACAAAAATTGGGGAAGACTTCAGTTAAATCCCAGCC IIIIIIIIIIIIIIIIIIIIG(a)IDI==.F<II26:< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1437:1559 83 chr20 36951791 60 36M = 36951467 -360 ATAATTGAAGACATTTTTAAATAACACTTTTTTTTC IIIIGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1437:1559 163 chr20 36951467 60 36M = 36951791 360 ATGCAATTGTTATCCAGGAATGGATTCACATTCAGC IIIIIIIIIIIIIIICIHIIIIIIIII9DII?D11C XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1294:687 83 chr14 32627554 60 36M = 32627218 -372 TGCAGTTAGAATGCATCTGATGGAAGCACTCTGCTC IIIIIIIIIIIIIIIBIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1294:687 163 chr14 32627218 60 36M = 32627554 372 ACTCATCTCTGCTATCATAGGGCAAAAAGAGCCACA IIIIIIIIIIIIIIIIIIIIIII=@6@:ICIIIDI- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1751:1059 81 chrUn 114262802 0 36M chr17 31600422 0 TCCTAGGTAATTGGTTGCTGCCTGTCTGTCCTTTCC 1I806IIAII5,III7IIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:20 X1:i:31 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1751:1059 161 chr17 31600422 37 36M chrUn 114262802 0 AATAAAATGTTGCACTTTTATAATATAGAATGATAT IIIIIII?IIIIIFIIIIIEIIIII@G::-IE+I@I XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1443:1181 83 chr11 53222400 60 36M = 53222099 -337 GTGAGGAAGATGACTTTTGTGATCTCAGATTCTTTC IIIIIIIIIIII>IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1443:1181 163 chr11 53222099 60 36M = 53222400 337 TCTGCCTTCTCTCTGTGGATTTGCCTATTCTGAATA IIIIIIIIIIIIIIIII<DIIIIIII+=IDII75I4 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1016:1027 81 chrX 81626706 23 36M = 81626363 -379 GGAAAGGGGTGAAGGTGTCCTTGTCCGTCCCCACTC IIIIIIIII?IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:17G18 +HWI-EAS91_1_30788AAXX:1:2:1016:1027 161 chrX 81626363 23 36M = 81626706 379 CTACGAGCACAGACTGCTTTCCCACATGGGATCACA IIIIIIIIIIIIIIIIIIIIIII3I+?<BI.C?*G) XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:3 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1524:1201 65 chr3 95623616 0 36M chr26 10102034 0 GCCCCCCAGTACATTGCTGTATATTCTTCGTTGTGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII* XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:2 X1:i:127 XM:i:1 XO:i:0 XG:i:0 MD:Z:14A21 +HWI-EAS91_1_30788AAXX:1:2:1524:1201 129 chr26 10102034 37 36M chr3 95623616 0 GAGAATGCACCCATGGGAGGCGGAGGAAAGGAGTGG IIIIIIIIIIII<IIIIIIIIII3II4C3II2I6@I XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:836:1643 99 chr6 68585405 60 36M = 68585755 386 GATGGAGCCTTTAGGTTATCCAATGGTCGTTTGAAA IIIIIIIIIIIIIIIIIIIII8IIIIIIIIIIII?I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:836:1643 147 chr6 68585755 60 36M = 68585405 -386 TGTCCACTTGCCTTGTCTCAACTGCCTTGTGCCCAG )86II:II:IIIIIIIII>IIIIIIIFIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:612:1350 99 chr9 22056955 60 36M = 22057339 420 GAGAGGTGAAGGATAAGGCAGGTCCATTCGGCTCAC IIIIIIIIIIIIIIIIIIIIII6II)II=IHI+I+F XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:612:1350 147 chr9 22057339 60 36M = 22056955 -420 AATTAGAATAATGGAAATAATAGGTAAAGACTAGGC III)IBIIIIIII<IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1100:1047 113 chrUn 84873335 0 36M = 66546754 -18326581 TAAGAAACAACTCGCTCTGCACAGTGCTGTTACAGC HIIIIIIIIIIFIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:164 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1100:1047 177 chrUn 66546754 0 36M = 84873335 18326581 AGAGCAGAAGTCCTACTTCAGCCAGATCAGGCCTGC IIIIDIIIII5IIAIIF>FIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:35229 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1336:1130 99 chr15 88251125 60 36M = 88251496 407 GTCTCAAACAAGTTTTCTGGCATCACTTCAATGTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIII@3IIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1336:1130 147 chr15 88251496 60 36M = 88251125 -407 TAAACCTAAAACATGAGTCACTGTTTTATCTAAAGC 6II=I;IIII;:I@IIIII;IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:803:662 99 chr3 53226486 60 36M = 53226876 426 GTTATATTTCATAAACCAATGTTCTACTTCAACATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:803:662 147 chr3 53226876 60 36M = 53226486 -426 TGAAAAAAGGAAGAACCAGCATTGTCTAGTGATGTG 1AIIIIIIIIIIII=IIIIIII>IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1233:1524 113 chr5 47966788 0 36M chr27 31015062 0 CCCACCAGCAGTGTATGAGGGTTGCCTTCTCTCCAC IIIAIIIIIIIEIHIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:331 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1233:1524 177 chr27 31015062 0 36M chr5 47966788 0 CCTTGAGGGTATTATGCTAAGTGAAACAAGTCAGAG -//9IIIHI9I:CI9IIEIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:11 X1:i:482 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:900:39 99 chr23 38909139 60 36M = 38909473 370 GTTGGTGGTAATTTCTGAGCACAGACCACGGGCATT IIIIIIIIIIIIIIIIIIIIIIIIIIIAIIIII.II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:900:39 147 chr23 38909473 60 36M = 38909139 -370 GACATACAGCAAGATTAACTGTCAGAGCACGCCTTT II9I?IGIIIIIFI5:IIIII?IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1534:1875 97 chrUn 21654444 0 36M = 21654837 429 GGGGGGTGTTCTGCATGAAAACAATGATACTAGGGG IIIIIIIIIIIIIIIIIIIIIIIIII?IIII>IIII XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:5 X1:i:4 XM:i:1 XO:i:0 XG:i:0 MD:Z:30C5 +HWI-EAS91_1_30788AAXX:1:2:1534:1875 145 chrUn 21654837 0 36M = 21654444 -429 TGAAGTCAGAGGCAAAAGCTCGTATGTGACAGTTGA =IH=C<IIIIICIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:4 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1365:1137 97 chrUn 9058003 37 36M chr25 37073922 0 GTGGTTTTTGCAGCCATAGTCTGTTACAGGAACACC IIIIIIIIIIIIIIIIIIIIIIIII'C0II382';I XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1365:1137 145 chr25 37073922 0 36M chrUn 9058003 0 TGCTCCAGCTAGAGAAGCCCAAGGTGACCTGGCCTA -H1)8AIIIDIIIIIIIC%IIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:415 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1327:1856 99 chr25 11948918 60 36M = 11949245 363 GATGTGGAATAGGCAGTCTGCATACACTTGGTTTAA IIIIIIIIIIIIIIIIIIIIG3III?III@IIII8G XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1327:1856 147 chr25 11949245 60 36M = 11948918 -363 AGGTTGCAAACAAGCCAGGCTGATTAGTCAGGGAGA ICGI9>-III2IIIIIIIII=II9IIIDIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:794:1092 83 chr6 31289289 25 36M = 31288911 -414 GAGGAAGAAACTGAGCTCTAGAATGGTAGCTAGCCC %1*+II&IIII;IIII&IDIIIIII;IIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16C16A2 +HWI-EAS91_1_30788AAXX:1:2:794:1092 163 chr6 31288911 25 36M = 31289289 414 ACCTTTCCCTATTACTTGGAACGTGGTGAATATATT I?IIIII.)II*I/-&86@I+I5H%2I6&@I3319I XT:A:M NM:i:3 SM:i:25 AM:i:25 XM:i:3 XO:i:0 XG:i:0 MD:Z:7T7C16A3 +HWI-EAS91_1_30788AAXX:1:2:759:1480 81 chr4 83612318 37 36M = 83612102 -252 ACATAAATCTGACTATAGCTTCCCTTTGATAAAACC I,IIIII6IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:759:1480 161 chr4 83612102 37 36M = 83612318 252 ATTGGGAGGTAGATATTCTTATTATCACATTTTCCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIBIIIIIIE XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1692:1105 113 chr8 1534478 0 36M chr13 12423749 0 GTTGCTCTTGATTTCCCAGAAACTGGATTGTAACTC IEIIIHIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:37 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1692:1105 177 chr13 12423749 0 36M chr8 1534478 0 TTACCTCCGGATGGTGTTACCAAAATTAAGAGCTCT II4IFF5IIIIIIIIIIIFIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:14 X1:i:15 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:805:1524 97 chrUn 32805644 0 36M = 32805961 353 GTGTTTTTGGCATGGGTTGCATGTGGCTCAGGCATT IIIIIIIIIIIIIIIIIIAIII.II6*III.A66I( XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:9 X1:i:14 XM:i:1 XO:i:0 XG:i:0 MD:Z:35G0 +HWI-EAS91_1_30788AAXX:1:2:805:1524 145 chrUn 32805961 0 36M = 32805644 -353 CACATGGGAGACTCCCTTGAACCACATCTGAAGAAC -I-G-?@+II8/@8I.6;IGICIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:14 X1:i:52 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1036:840 99 chr5 60688061 37 36M = 60688344 319 GACAGCAGCCATATGAGGCTCTCAAAGCCTGAACTG IIIIIIIIIIIIIIIIIIIIIII9IIEIII8.III* XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1036:840 147 chr5 60688344 37 36M = 60688061 -319 AGAGGCATGGAACACCTGGTGCCTTCTATATTCCAA IGEIG.IDIIIIIIIIEIIIIIIIIIIIIIIIIIII XT:A:M NM:i:3 SM:i:37 AM:i:37 XM:i:3 XO:i:0 XG:i:0 MD:Z:3C8T9G13 +HWI-EAS91_1_30788AAXX:1:2:1181:657 83 chr9 332134 60 36M = 331830 -340 TTTGTTGTCAAATGCTTGCTCTACCTCAATCAATAC ID;ICIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:18T17 +HWI-EAS91_1_30788AAXX:1:2:1181:657 163 chr9 331830 60 36M = 332134 340 TCCCCTCTTCCTTTTAGGCTGTAGAATCTCTGAATA IIIIIIIIIIIIIIIAI;IIIE:I75IIIGI201I/ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1431:1348 97 chr2 18162968 37 36M chr15 46649635 0 GAAAACTGAGGCTAGGGGCTGGCCTGGTGGTGCAGC IIIIIIIIIIIIIIIIIIIIIIIII>IIIIII;)<0 XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1431:1348 145 chr15 46649635 0 36M chr2 18162968 0 AAGCCTATTCTTTTTTTTTGCTGAGGAAGATTTGCC IIH<IIII?IIIH@I8A8III2IIIIIIIIIIIIII XT:A:R NM:i:2 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:20G11G3 +HWI-EAS91_1_30788AAXX:1:2:990:238 83 chr15 2889926 60 36M = 2889555 -407 AGTGGGGGACAAGGGAGTCTAGGGTGCTACAAAACC II:IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:990:238 163 chr15 2889555 60 36M = 2889926 407 AGTGAGGAGGACAAGCTGACATCTGTTGAAGGAGAA IIIIIIIIIIIIIIIIIIIIIIIIIIII5,IIHIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1247:508 99 chr2 73298833 60 36M = 73299173 376 GATAAACCACTGTGGAGGCATAAATAAGGAGCACAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIHIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1247:508 147 chr2 73299173 60 36M = 73298833 -376 TTGTTTTAAGCTCTCCTGCTACCACATTGCACATTT IE917I8IE<IHI8II8IICIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1718:1889 69 * 0 0 * * 0 0 CCCCCCCAAACGGCACGCCAAACCACGTAGTCATTT IIII;IIIII+II%-'&'<&&$64&6'%$)%$%$#$ +HWI-EAS91_1_30788AAXX:1:2:1718:1889 133 * 0 0 * * 0 0 AACAGAACCCGGGGTTCTCCTACATCTTCACCTCCC //I((++IIIIII3/$.F*$#$I&#5%$0&$'+%:+ +HWI-EAS91_1_30788AAXX:1:2:1100:442 83 chr6 40362001 60 36M = 40361629 -408 CCCAGTAGTGCTGCCTGACCCTCGCAACTGCTAATC IIIHI2CI,II5IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1100:442 163 chr6 40361629 60 36M = 40362001 408 CCAAGCTACTCTTACCCAAAATTTCTACAGGAAGTC IIIIIIIIIIIII>III/69II4II:EI;I&III3@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1677:1117 99 chrUn 23213983 60 36M = 23214376 429 GCTGGCCCCTGAAAATTGTTTTTGAAAAAGTCGCTA IIIIIIIIIIIIIIIIIIHIIIII@IIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:32A3 +HWI-EAS91_1_30788AAXX:1:2:1677:1117 147 chrUn 23214376 60 36M = 23213983 -429 AATTGAATCAGCTGTCAGGAAAAAATCACACAGGAG III&:I@,IIIIDIIIIIIIIIIIIIIAIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:669:1833 83 chr1 140707298 60 36M = 140706983 -351 TATGCTTCAAGCACAGATGTTTTCACGAGAGAATTC IIIIIDCIIIII$IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:12C23 +HWI-EAS91_1_30788AAXX:1:2:669:1833 163 chr1 140706983 60 36M = 140707298 351 TCCTAACCACCATAAAAACCTCAAGCTAATCTCTGT IIIIIIIIIIIIIDIII+IICIIB@IIIIIIIII$I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1008:1099 83 chr7 72771480 60 36M = 72771153 -363 AGCACAATAACACAATGATCAGATCGGTGCCATTGC II9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1008:1099 163 chr7 72771153 60 36M = 72771480 363 ATTGCCAGACCTTGTCACCACCCAGAGTTACTCAAT IIIIIIIIIIIIIDII6IIDIII0I-I1I<IFI.-A XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1630:1465 99 chr27 8633581 60 36M = 8633922 377 GGCAGGATTGTTAAATAGAATTTAGCCAGCCAGACA IIIIIIIIIIIIIIIIIIIIIIII=II7I=IE<E0I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1630:1465 147 chr27 8633922 60 36M = 8633581 -377 CAAATTATAATCAGGATCAGAATCCAGTTGTTGATT *'II(;I@+IIEIIIDII'IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1036:587 99 chr8 40262771 60 36M = 40263112 377 GTAAGATGGGATATTATTCGGTAGTACAAAGGAATG IIIIIIIIIIIIIIIIIIIIIIIIFIIIGIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1036:587 147 chr8 40263112 60 36M = 40262771 -377 AATTGTATGGTATAGGAAAGGTAGCTCAATAGAGCT FI50I4IIIIII<IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:843:517 83 chr2 1490548 60 36M = 1490213 -371 AGGTGGCCTATAATAGGCTCTCACTAAGCTATAGAC IIIIIIIIGIGIICIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:843:517 163 chr2 1490213 60 36M = 1490548 371 GTTGAGAGACTATTGTGATGCTTTGATTCGGCAGGT IIIIIIIIIIIIIIIIIIIIIIII,<III7(>/>$> XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:34C1 +HWI-EAS91_1_30788AAXX:1:2:1233:1042 97 chr7 27391212 37 36M chr29 17216741 0 GTGTGTGCAGTGCTTTGGGGCAGAGGCCTGACTGCT IIIIIIIIIIIIIIIIIIIIIII:IIIII;+II7II XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1233:1042 145 chr29 17216741 0 36M chr7 27391212 0 CTGGGGTTCGCTGGTTCGGATCCCGGGTGCCGACAT :,I9I3>-=?I.=II9=IBI<IIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:126 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1183:756 83 chr21 38233024 60 36M = 38232729 -331 GGAAGACTGGCAAGAGATAGCTCAGGGACAACCTTC FIIIII;BIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1183:756 163 chr21 38232729 60 36M = 38233024 331 TGTATAAAACTCAATTTTATGAGGGCTGAGAACACT IIIIIIIIIIIIIIIIII<II:@IIIII=IICI6AI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1479:620 113 chrUn 117317193 0 36M = 85835716 -31481477 CAGGTGATTCCGAAGTGTTCCCCAACTGGTTGTGGC IIIIGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1451 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1479:620 177 chrUn 85835716 0 36M = 117317193 31481477 CATGCAGGAACCACCTTTCACACATGCCAGAACCCC IIIIIIIIIIIIHIIIIF?IIIIIIIIIIIIIIIII XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:30 X1:i:1396 XM:i:1 XO:i:0 XG:i:0 MD:Z:16C19 +HWI-EAS91_1_30788AAXX:1:2:1258:393 83 chr24 10693332 60 36M = 10692981 -387 AATTCAGCCCTAAAGTCTTTGACTGAATCTCCTTTC IICIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1258:393 163 chr24 10692981 60 36M = 10693332 387 TTGATGTTTACTGCCATGTCCCTAACATGCTGAATT IIIIIIIIIIIIIIIAI?IIIIIIII0F>III+.II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:784:951 97 chrM 15205 23 36M = 15567 398 GGACAGCCAGTGGAACACCCATACGTAATTATCGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIICII3GI XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:784:951 145 chrM 15567 25 36M = 15205 -398 TATGAATGGCCTATGTACGTCGTGCATTGAATTGTT BI.DIIIII@3IIFIIDDI=IIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:23 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28A6C0 +HWI-EAS91_1_30788AAXX:1:2:726:913 81 chr4 89354251 23 36M = 89353945 -342 AGGTATATTAACACTCCAGACCAGAAGAAAAAAGAC IBDIIIIIIIIII5C+IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:726:913 161 chr4 89353945 37 36M = 89354251 342 CCTGTGGGATTGTGCACATGAAAGCGAGGGCACCTC IIIIIIIIIIIIICIIIII2IIA8I;1I:IH,IB:I XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:580:634 81 chrUn 49942635 0 36M = 91107408 41164737 CAGGCCTCACATCTCCTTCCCTTTGGATAAATGGGC @IIIIIIIIIIIIAIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:2 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:580:634 161 chrUn 91107408 0 36M = 49942635 -41164737 TCGAGCTCTTTTGCAGTCTAAGAAACAACTCGCTCT IIIIIIIIIIIIIIEIIIICII@IIGI9I?<>I3>I XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:192 XM:i:1 XO:i:0 XG:i:0 MD:Z:2C33 +HWI-EAS91_1_30788AAXX:1:2:653:1167 83 chr1 144732560 60 36M = 144732184 -412 TTATTACCTTAGTCACAGTTATAAGAATAAAATCTC IIIIIIHDIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:653:1167 163 chr1 144732184 60 36M = 144732560 412 TTCATTTTCTTGTGAAAGGAAAGGGAGGGCAGCACG IIIIIIIIIIIIIIII>.I>IIIIIIIIIIIIG<BI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1348:1561 83 chr12 28339137 60 36M = 28338781 -392 TTCCATCCCTGAATCCCTCCTCCTCTCCGTCCCTTC I4III9IIIHIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1348:1561 163 chr12 28338781 60 36M = 28339137 392 GATGGGACCGGCCTTCTCTTTTGGATGTTCCTCAAA IIIIIIIIIIIIIIIIIIIIIIII>IIII/G2G,0, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1370:917 83 chr1 170256013 60 36M = 170255715 -334 TATTTTTTAAATTTTTTTATTCCCTCAGTGTTGATC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:7A28 +HWI-EAS91_1_30788AAXX:1:2:1370:917 163 chr1 170255715 60 36M = 170256013 334 TCTTGATTAGGCCCAAATCTATGTAGCTGTTTCAGA IIIIIIIIIIIIIIIIAIIIIIII>IIIIIIID23, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1555:535 83 chr7 29103820 60 36M = 29103487 -369 TAAAGGCTCCTTGTCATTCTTTCAAGAAATCTCCTC IIIIBIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1555:535 163 chr7 29103487 60 36M = 29103820 369 CAAGCTGACCGGGTTATAGAAGTAGGAGTGAATACG IIIIIIIIIIIIIBI@IAI=IIIIIIIIHI>?IIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1110:1711 97 chr22 18052613 23 36M = 18052973 396 GATGTACTGTATATCATGCCTTTAAGGACTGGACTT IIIIIIIIIIIIIIIIIIIIIII=C?I0IIIIDIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1110:1711 145 chr22 18052973 23 36M = 18052613 -396 CCCCCACACCACTCGTCAAGCCATGCTGTGGCAGTA 31<&I>IAI+$I.I=4EIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:3A32 +HWI-EAS91_1_30788AAXX:1:2:1623:435 113 chrM 9041 0 36M chr27 37372534 0 AACACCTCAGTGCTCCTAGCATCTGGAGTCTCTATC IIIIII2IIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1623:435 177 chr27 37372534 0 36M chrM 9041 0 TGAAATCACATGGCTAGTCCTGATGTTATCAGGAGG ,IFIIII1II6IIIDIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1299:829 83 chr1 94762174 60 36M = 94761824 -386 GCAAATGCCGTTGTATTTTACCTAACACCACTGGGC I:III<IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C30 +HWI-EAS91_1_30788AAXX:1:2:1299:829 163 chr1 94761824 60 36M = 94762174 386 TAAGACTGAGTAGAGATGCAATTTCAACCCAAGTCG IIIIIIIIIIIIIDIIIIIIIIIIIICII924<;IE XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1444:892 99 chr28 26021348 60 36M = 26021697 385 GCTTATTGTAAGGAAATGTGCATGAGAACCTGAGAA IIIIIIIIIIIIIIIIIIIIIIIIIIIEIIII:I9I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1444:892 147 chr28 26021697 60 36M = 26021348 -385 CTCCAAGCTTTTGCTTACTCATGTTTCCATTCCCTC I0IIIIAI7A8IIIHIIIIIICIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:22T13 +HWI-EAS91_1_30788AAXX:1:2:958:1288 83 chr27 2185240 60 36M = 2184882 -394 GAAGGAGGAGGATCTTTACGTGTTGCCTCCCCACCC I9IIIIIIIIII@GDIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:958:1288 163 chr27 2184882 60 36M = 2185240 394 GTGGAGCCCTCAAGAGTGGGAATGGTGCCCTCATAA IIIIIIIIIII3II=I:<II81II84'@II1E+D*I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1521:1399 83 chrM 4351 60 36M = 3975 -412 ATATCAATCCTATATCAAATCTCACCCTCAATTAAC IIIEIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1521:1399 163 chrM 3975 60 36M = 4351 412 TCTTCTAGGAACTATAATCGTTATAATAAGCTCACA IIIIIIIIIIIIIBI=DIIIDI;I9EI>?1IFE4D+ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1345:1242 99 chr8 93625741 60 36M = 93626103 398 GAGGGTGTTACTGTATCTGAAGGACGAAGCTGAGTG IIIIIIIIIIIIIIIIIIIIIIII1IIIIIII9III XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1345:1242 147 chr8 93626103 60 36M = 93625741 -398 TCCAGTTGTCTTCACCAGGCCACGTCTTGGATTCTG -'*2A9'+09=*I)II&IEFIIIIIII6IIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1612:1818 83 chr2 24756597 60 36M = 24756284 -349 ATGGTAAATGAGAGTTATACAAACAAGAGAGTGCTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1612:1818 163 chr2 24756284 60 36M = 24756597 349 GCGAGGGCGAGGAGATGCCTTTCATTCTTTTATTCG IIIIIIIIIIIIIIIIIIIIIII6IIIIIII5II<I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1533:1600 113 chrM 8704 0 36M chr27 37372885 0 AGCCCTATCAGCCCTCCTGATAACATCAGGACTAGC IIIIIAIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1533:1600 177 chr27 37372885 0 36M chrM 8704 0 TCTCGATAATTACTAGTATGGGGATGAGGAAAATGG ),/6IIIII07IIIII3IAIIIII5IIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1693:791 99 chr7 79821880 60 36M = 79822188 344 GGCAAGAGCCTTGAATGTCCCCCTAGGTCAGATGGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII3IIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:18G17 +HWI-EAS91_1_30788AAXX:1:2:1693:791 147 chr7 79822188 60 36M = 79821880 -344 TTCACTTTTTGAAGAGAGAAGTATCAAAGGATTTGT :2I7I<I566IIIIIIIIIIIIIFIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1408:1674 99 chr7 83027061 37 36M = 83027392 363 GTTTTAAGCACATAAGCCAGAACGACAGGCCCTAAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII6I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1408:1674 147 chr7 83027392 37 4S32M = 83027061 -363 GAAAAGAGGTGGGCTGCCATAAAGCCACAGTAGCCA '&9#12%?/.)I'H.II.IEIIIIIIIIIIIIIIII XT:A:M NM:i:1 SM:i:37 AM:i:37 XM:i:1 XO:i:0 XG:i:0 MD:Z:6T25 +HWI-EAS91_1_30788AAXX:1:2:927:240 99 chr8 48667031 60 36M = 48667381 386 GTTTGCTAATACATCCTTTATTGGCTGCCTTCCTTT IIIIIIIIIIIIIIIIIIIIIII@III#I0I@I%II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:927:240 147 chr8 48667381 60 36M = 48667031 -386 AGTACTGAAGGAAGCTTCAGGTCACCCAACTATCAT II6DI-IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1724:1857 99 chr4 10950719 60 36M = 10951079 396 GTGGCGATTGCGTAGAAGTGGTTCACTGATTACTTC IIIIIIIIIIIIIIIIIIIIIIIB;III8II<;II1 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1724:1857 147 chr4 10951079 60 36M = 10950719 -396 AAATAAAGCTATTTGTTGACTGTTTAGGAAGAACAT IIIIIIIHI:II?III@IIIIIHIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1666:134 83 chr15 63379853 60 36M = 63379507 -382 TTATCACTGGTTGGATCCAGCACTGACCTCACCATC IHIDIII9IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1666:134 163 chr15 63379507 60 36M = 63379853 382 TGCTTCCACTGCCTCCCCTGGGTTTGAGTCCTGATT IIIIIIIIIIIIIIIIIIIIIIIIII6IIIIII:IG XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:700:1623 99 chr19 59295487 60 36M = 59295805 354 GTGTGAGTAGGTGCTAGACAAGTATGCATTTACAAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII:.% XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:35G0 +HWI-EAS91_1_30788AAXX:1:2:700:1623 147 chr19 59295805 60 36M = 59295487 -354 TTTTTGTAATCACCATTGGTCTAAATTAACCAATCA @5GE@?:III6I3II<AI)III:IIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:22C13 +HWI-EAS91_1_30788AAXX:1:2:994:407 113 chrUn 77938019 0 36M = 84124026 6186007 AAACAACTCGATCTGCACAGTGCTCTTACAGCCTAC III3III1IEI9IHIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:55 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:994:407 177 chrUn 84124026 0 36M = 77938019 -6186007 TGCACGTTGTGCCTTTCAGCTCTAGGGCAATGTAGC )?F8II:4I>IDH7BBIIIIIIBIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:8629 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1728:1908 81 chr15 67427371 37 36M chr20 2151535 0 CCAACATTTGCCGAGTGCTTACCATTTACACCAAAC II,+AII?IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1728:1908 161 chr20 2151535 0 36M chr15 67427371 0 TTCAGTGGCCCAGGGGTCGCAGGTTCGGATCCTGGG IIIIICIIIIIIIII+I<3>AII-IIE;3I5II?I@ XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:11 X1:i:101 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T20 +HWI-EAS91_1_30788AAXX:1:2:1046:147 83 chrX 105048797 60 36M = 105048518 -315 AAGTGGAAGTACTAGAGGTCCATGTCCTTAAAAAGC IIIIIII$)IIIIII.I&7FIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C18 +HWI-EAS91_1_30788AAXX:1:2:1046:147 163 chrX 105048518 60 36M = 105048797 315 CGTAGGTTCCAACATCCTATAGCACGGGCCCATCTC I&IIIIIIIIII4IIIIIIIIIIIII&4I@I%I+4I XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T24T9 +HWI-EAS91_1_30788AAXX:1:2:1319:675 99 chr5 70314517 60 36M = 70314844 363 GAGTAGAAGTGACAGGGGCTAGCCAACAAGCACTCT IIIIIIIIIIIIIIIIIIIIIIII;FI+III2I?IE XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1319:675 147 chr5 70314844 60 36M = 70314517 -363 CCCAAAGCAGCAGAACCTGTGCGTTAGTTTTGATTG A&+?8I(a)6EIIIII0II.I5IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1380:804 83 chr20 11293877 60 36M = 11293514 -399 GCTGGCCAGTGGCAGAACGGTTACATTTGTGCACTC IG>IIIIII?IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1380:804 163 chr20 11293514 60 36M = 11293877 399 AGGTATAAAGGAGGAATAAAACCCAAATATTTGGAA IIIIIIIIIIIIIIIIIIIGIIII?.I=ICIIIC1: XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:708:970 113 chrUn 107048267 0 36M = 86087043 -20961224 GGTGTGCTACTTTGCCCTAGAGCTGAAAGGCACAAC IIIIIIIIII7I.IIIGIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:26260 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:708:970 177 chrUn 86087043 0 36M = 107048267 20961224 TAAGAGCACTGTGCAGAGCGAGTTGTTTCTTAGCTT IIIIIIH4IIIIIIIIII8IIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:41643 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1230:1376 65 chrUn 39717768 37 36M chr25 16341770 0 GAGTTTCACATATGACCTGTTGTCTCTGAATTCATG IIIIIIIIIIIIIIIIIIIIIIIIIIIII=IIIII+ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1230:1376 129 chr25 16341770 37 36M chrUn 39717768 0 TGACTCAATGAGCCACTGTGCTCTAAACTCTCTACC IIIIIIIIIIIIIIIII;IIIIII;48IBIII6:@F XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1776:820 99 chr8 89942801 60 36M = 89943165 400 GGAGCAGACAGGGTACCACTTCACGGACACAGAGCA IIIIIIIIIIIIIIIIIIIIII<IIEII>I=7IDI- XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1776:820 147 chr8 89943165 60 36M = 89942801 -400 AATTAATTCCTGGACTGAATCAAAGACAGCCTGTGC &A1%I><+I,(H1>*+4II/I%IIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C20C14 +HWI-EAS91_1_30788AAXX:1:2:1264:674 99 chr19 37086246 60 36M = 37086604 394 GATGGCAGAAAAGTGGACAGAGACAGAGATGCAAAC IIIIIIIIIIIIIIIIIIIIIIIIFIAIIIII;FI@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1264:674 147 chr19 37086604 60 36M = 37086246 -394 ATTTTTTCCTCATCTGATACTTTCTCATATTGTCGT I<8B6I2II0II0I5IIDII:IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:606:638 83 chr20 57935589 60 36M = 57935259 -366 ATAAAGAAATATTTCTCTCAAATATTTACTATTCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:15C20 +HWI-EAS91_1_30788AAXX:1:2:606:638 163 chr20 57935259 60 36M = 57935589 366 TAATTCATTTTCTGCACAGTTTCATTCAAAGTGATT IIIIIIIIIIIIIIIII;IIIIIIIIIFIG-II4II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:867:25 99 chr15 33513370 50 36M = 33513706 372 GTTATCTCCCAGGCTCTCAGCACCCCTCCCACCCAA IIIIIIIIIIIIIIIIIIDIIIIIIIIIII3III-' XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C0G34 +HWI-EAS91_1_30788AAXX:1:2:867:25 147 chr15 33513706 50 36M = 33513370 -372 TGGTNGTGTGTCCAAATGANGAAACAATATGGAATA +ID&"I0I9I/),III@II"IIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G14A16 +HWI-EAS91_1_30788AAXX:1:2:681:664 97 chr30 15133966 23 36M chr2 121929 0 GTTATCCATAGTGGATGCACCAATTTACATTCCCAC IIIIIIIIIIIIIIIIII8II86IIIII3IIIII2I XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:6 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:681:664 145 chr2 121929 0 36M chr30 15133966 0 TTGTTGATGGTTTCTTTTGCTGTGCAGAAGCTTTTT -=I.CII@H;8IIIIIIIII6IIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:70 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1476:71 83 chr4 91313603 60 36M = 91313233 -406 GTCCCTCTGTACTTTTCTTTCCTGTCTGAAACATTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:34C1 +HWI-EAS91_1_30788AAXX:1:2:1476:71 163 chr4 91313233 60 36M = 91313603 406 CCTTATTTCGTCTGTAATTTGTCTTGCAAATTAGGA IIIIIIIIIIIIIIIIIIIII@IIIII/IIFIGICC XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1336:234 99 chr15 41534337 60 36M = 41534672 371 GTTTGTTGCATCCATCTCACTTCTTTGAGTACTTCA IIIIIIIIIIIIIIIIIIIIIIIIIIIAIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1336:234 147 chr15 41534672 60 36M = 41534337 -371 TGAATTGTTCACTGACTACCGCATTATCCCTCTGCC ,/I<II2IAI4I,9HIIIIIIIII=IIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:717:1143 99 chr5 78446612 60 36M = 78446977 401 GGAAGAATGAAGTAGTGGCTTCCAAAATTCATTAGC IIIIIIIIIIIIIIIIIIIII-I)6;7<I-%AI/0/ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:717:1143 147 chr5 78446977 60 36M = 78446612 -401 GGCAAGTCCCCTACCCTGCCTCAGTTTCCTCATCTG I5:I>>HI&II>$IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:8A27 +HWI-EAS91_1_30788AAXX:1:2:870:1445 113 chrX 36099151 0 36M chr10 53848335 0 CCCAGATAAACAAAAGCTGAAAGAGTTCATCACCAC %49IIIHIII0IIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:22 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:870:1445 177 chr10 53848335 23 36M chrX 36099151 0 TTTTCCCCAGGTTTGGGAAGTTCTAAGCCATTATTT <IC,I=II@II3IAIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1328:472 99 chr9 3434377 60 36M = 3434727 386 GCTTGGCGGGGGCAGGCCTGGGCTTGGGAACAGCCA IIIIIIIIIIIIIIIIIIIIIIIIIIII2II<IFI2 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1328:472 147 chr9 3434727 60 36M = 3434377 -386 GTGGGGAGTCTTGACATGTATTATCAGGAATCCACA I&:III8<+=:3C<-A5IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1428:1148 83 chr2 100737078 60 36M = 100736710 -404 TCTCTTCATTTCAGGTGAAGGCTATCTGATTTCCCC EIII>8IIBI4IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1428:1148 163 chr2 100736710 60 36M = 100737078 404 ATATTTATATGGTATGACACACTTGAGCTATATTTG IIIIIIIIIIIIIIIIIIIIGIIIG+@IIEI,III( XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1145:1375 81 chr8 53683266 23 36M = 53682925 -377 TTGGGCCGCCAAAGCAGAGCATGCGAACTTAACTTC 4+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1145:1375 161 chr8 53682925 37 36M = 53683266 377 ATCACAGGTTATAGCCACTCCATAATTTTAATGTAC IIIIIIIIIIII@III2IIII?C05HIII2CI2I4A XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:779:1408 81 chr6 74409562 0 36M = 74409215 -383 ATTATCTCACTTCACAAATTAGAGCATCATGATTTC IIIII5I;I8I@GIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:779:1408 161 chr6 74409215 23 36M = 74409562 383 GGGGTCCTCTTATTATCCCGACTTGCTGATGTGAAA IIIIIIIIIIIIIIIIIIII6III8IG<+I$96/-< XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1285:663 81 chrX 58351700 37 36M = 58351364 -372 GTGGGGGGCATGGCTGAAAATTCCGAGCTTCTAATC I5IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1285:663 161 chrX 58351364 23 36M = 58351700 372 GAGGTTCCAATGACCCCCTACTTGGGTTTGATTAAT IIIIIIIIIIIIIIIIIIH1IGIIII:IIIIII5@I XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:615:1216 99 chr10 68563652 60 36M = 68563993 377 GTGAGTCCACTTCATCCTTATATTATTCCACATCCC IIIIIIIIIIIIIIIIIIIIIIIII),IIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:25G0G9 +HWI-EAS91_1_30788AAXX:1:2:615:1216 147 chr10 68563993 60 36M = 68563652 -377 GCAAATCTTTTCATATTCCCTAATTCATTGATGAGG C>IIIIFIIIIIIIIIII*IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:423:1038 117 chr12 29176380 0 36M = 29176380 0 AGAAGGAATAAAGACATTGAATAAAAAAAGAAAACC '+III9II.IIII7'IIIII,I&IIAIIIIIIIIII +HWI-EAS91_1_30788AAXX:1:2:423:1038 153 chr12 29176380 0 36M = 29176380 0 TTTTGGGCTCCTTCTGTATTTTCCAGACTTTTTTCT I1III6IIIIIIIIIIII1IIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:3 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:978:417 83 chr1 124574504 60 36M = 124574232 -308 ATCCTCCTGATGTCATAACGTGTGGCATCACTGCAC I@II7II:IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:978:417 163 chr1 124574232 60 36M = 124574504 308 CACAGCATTCATAATATTCTGTGAGCTGACTCAAAT IIIIIIIIIIIIIHIIIIIIIIIIIIIIAGII0I7I XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T20 +HWI-EAS91_1_30788AAXX:1:2:1529:1049 81 chr8 29373021 0 36M chr3 36408903 0 CCACGTCAGGCCCTTTTGGAAAAACACTGTCAGGCC .IIIIIIIII-IIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:7 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1529:1049 161 chr3 36408903 0 36M chr8 29373021 0 CCCAGAGAGGACGTTTCACATAGGATCGAAAGGTCC IIIIIIIIIIIIIIIIIII.I3II4II:?>9II0>I XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:6 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1318:1604 99 chr14 44413404 60 36M = 44413658 290 GTGTCCCAACGTTAGTGCAAAATTTGTTCAATGGGC IIIIIIIIIIIIIIIIIIIHGIIIIIIIIIIII6DI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1318:1604 147 chr14 44413658 60 36M = 44413404 -290 GAGGGTCTATGCCTGTCCTACTTACTCCACCTTATG IIIII0IIIAIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1654:470 99 chr13 8486868 60 36M = 8487227 395 GGTATTAGGGCTGAAGGATGATTCCACAGAAACCTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIEHIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1654:470 147 chr13 8487227 60 36M = 8486868 -395 CCATGGTCCCCAGTAGTAACCTCAGCTTGGGCAGCT 0+-3II;I<EB;?IIIIIIII2IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:544:1136 99 chr5 55962312 37 36M = 55962597 321 GGACTTTTTTTTCCTGATTTTTCTCCTTTCTGATAT IIIIIIIIIIIIIIIIIIIIIIIIIII%'II26+CI XT:A:M NM:i:3 SM:i:37 AM:i:37 XM:i:3 XO:i:0 XG:i:0 MD:Z:27G0G4G2 +HWI-EAS91_1_30788AAXX:1:2:544:1136 147 chr5 55962597 37 36M = 55962312 -321 GAGCTTCTTTATTTAAGAGCAACACTGCCCTGTCCT II<8I81I:IIII0IIIIIIIIIIIFIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1469:1168 83 chr20 41018922 60 36M = 41018608 -350 TAAGGTGCAGCCCCTGCCCTCAGGGAACAACCAGCC >III9/IIIIIII9IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1469:1168 163 chr20 41018608 60 36M = 41018922 350 CCCACCAGGGAGGCTGTTACCTGGGGGTCACCACTG IIIIIIIIII+IIIIII72IIIII<CI>4/9@%;7- XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17G18 +HWI-EAS91_1_30788AAXX:1:2:1322:974 113 chrUn 113951505 0 36M chr10 11491468 0 ATCTGAAAGCTATATCATCTTAGAATCCACTGTTAC I6.0IIIIIIIIIIIII@IIIIIIICIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:8 X1:i:28 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1322:974 177 chr10 11491468 0 36M chrUn 113951505 0 TGTGTTTGTCGTTGTTTTTATCTTCTACTTATGAGT +I0IC=>IIIIGIIIDIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:48 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:969:1431 81 chrUn 72884016 0 36M = 80856173 7972121 TTCTCTTTTGTGGATTTGGGAAGTTTCGAACTTGAC I<ICI7I5IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:145 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:969:1431 161 chrUn 80856173 0 36M = 72884016 -7972121 TTATCAGTCCGTTCTCCTTCAGTCCCAGGGATTAAT IIIIIIIIIIIIIIIIIIIIEIIIII2?<B.BI36I XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:158 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1307:1618 83 chr14 31953348 60 36M = 31953054 -330 CCAAATGACAGGTGGTGGAGTGTTAGGGTGAAGCAC CIIIIIIIIIII@IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1307:1618 163 chr14 31953054 60 36M = 31953348 330 GAATACATAGGGAATTACATCCAGCTCTTCTATCCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII:III2 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:779:198 99 chr1 116729949 60 36M = 116730274 361 GACAGCACAGATCCAAAATAATTTTAGGACAAGCTA IIIIIIIIIIIIIIIIHIIIIIIIIIIIIIIIIICI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:779:198 147 chr1 116730274 60 36M = 116729949 -361 AGGAAAACCAAAAGCAGATGAAAACTATTGGTTTAA II8IIII5IIIIIIIIAIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:741:1526 99 chr3 67613931 60 36M = 67614249 354 GTGGTGAGAGGAATTAACATGCATGGCATGAATGTG IIIIIIIIIIIIIIIIFIIIIIIIIII:II>?I&I4 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:741:1526 147 chr3 67614249 60 36M = 67613931 -354 CACAACTTGCAGAGTCTTTAGGGAAAAGCAAAAGCT +I7GB(I0I8IIIIBB;I=IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1136:1426 83 chr17 75660251 60 36M = 75659900 -387 CATACCCTCCATGGTGAACATTTTCCTCCTGAAATC CI;EIII6IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1136:1426 163 chr17 75659900 60 36M = 75660251 387 GCCTGTTATCTCACTCTACTGAAGACTAGGCACCAG IIIIIIIIIIII>IIIIFIII/?I;G1<AFIFI=,? XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:1634 83 chr1 81568049 60 36M = 81567794 -291 CCCTTCTATCCATTCCCAGCTCAGGGGGCTGCATTC *D&;IIIIIIIIIAIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:1634 163 chr1 81567794 60 36M = 81568049 291 ATGCCCTACTTCTATGTCTTATTTTAGTTGTATTAA IIIIIIIIIIIIIEIEIIIIIIIIII1I&&-9II>I XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28G1G5 +HWI-EAS91_1_30788AAXX:1:2:1489:582 69 * 0 0 * * 0 0 GCTGAATTTACGGAAAACATTATTAATGGCGTCGAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIH== +HWI-EAS91_1_30788AAXX:1:2:1489:582 133 * 0 0 * * 0 0 TTAGACATTACATCACTCCTTCTGCACGTAATTTTT IIIIIIIIIIIIIIIIIIIIIII4I5IIII<IIIII +HWI-EAS91_1_30788AAXX:1:2:971:752 99 chrX 22241233 60 36M = 22241616 419 GAAAGGAAAATGAAGATCTGTGACTTGTGATATAAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:971:752 147 chrX 22241616 60 36M = 22241233 -419 TATGTGAACAGTTGGGTTGGGTAATTTGTTGTTAGT @I2I3II5III71IIII>IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:945:344 97 chr5 35649994 0 36M = 35277607 -372351 GAAATCATCCATGTGATGCATTGCAACAGCTCAAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII<DI XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:3 X1:i:2 XM:i:1 XO:i:0 XG:i:0 MD:Z:28A7 +HWI-EAS91_1_30788AAXX:1:2:945:344 145 chr5 35277607 23 36M = 35649994 372351 TCTGTGTCAGCCATTTTAGTTACTCCCCCCTCAATG 425HC23IEIIII<CIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:4 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:795:1130 83 chr8 51886907 60 36M = 51886616 -327 ACAGAGATGTGGAGCACCTGCATGACTGACTTTAGC I>IIIIIII@IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:795:1130 163 chr8 51886616 60 36M = 51886907 327 CAAGACCACCCTTAGGTTTGATGACATTCACTCAGA IIIIIIIIIIIIIBIIIIIIIIIIIIIIIIIII3+I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1672:655 99 chrX 16249942 60 36M = 16250248 342 GAACTTTCTCTGGAGGGAGATGATGATATATCTCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1672:655 147 chrX 16250248 60 36M = 16249942 -342 TGGCCATTTCACAAAGTCTCCAAGCTGCTATGTTAT 4I8IGI=?5IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:28C7 +HWI-EAS91_1_30788AAXX:1:2:1580:8 69 * 0 0 * * 0 0 GNNNNNNNTNNGNNNNNNNNNNNNNNNNNNNNNNNN I"""""""I""I"""""""""""""""""""""""" +HWI-EAS91_1_30788AAXX:1:2:1580:8 133 * 0 0 * * 0 0 NNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNN """"""""""""""""""""""""%""""""""""" +HWI-EAS91_1_30788AAXX:1:2:1715:695 99 chr25 29605422 60 36M = 29605827 441 GCTGTGCTGTTACATTGGAATGTACTGAGAATGTCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1715:695 147 chr25 29605827 60 36M = 29605422 -441 AGTATTTTCATTTGAGAAAAATTATGAATGAGAAAA I:@III@;IIAIIIIIIIIIIEIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1130:1800 97 chr15 58992981 37 36M = 58993216 271 GGAGGATTGTGATGAAACCGATATAAATCTCTGTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1130:1800 145 chr15 58993216 37 36M = 58992981 -271 AGGGGCATTTAAAACCAATATATTTTTATTATGTAA IIIII:IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:619:1182 83 chr20 3885588 37 36M = 3885258 -366 GTTGTATATAATAGAAAAAATAAAAAAAACCACCAC *B4*1I=I&II-I-IIIIII4IIIIIIIIIIIIIII XT:A:M NM:i:3 SM:i:37 AM:i:37 XM:i:3 XO:i:0 XG:i:0 MD:Z:10C4C8C11 +HWI-EAS91_1_30788AAXX:1:2:619:1182 163 chr20 3885258 37 36M = 3885588 366 AGTAGAATACCAGGCAGACATAAGAGAGAATGTGGG IIIIIIIIIIIIIIIII9I4I3FI1I=IH?IIA;*I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1471:1002 99 chrUn 17163474 60 36M = 17163827 389 GATCAAATATAAAGCAAAATTGAAATGAAAATGATG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1471:1002 147 chrUn 17163827 60 36M = 17163474 -389 GTCTAGAGCATAGTGACACACGTTGTGCTTTTTCTC @8D'IIIIICI:H2:5I?I9IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:855:528 81 chrX 78414518 0 36M chr7 7007257 0 TGGCTGCACCAGTTTGCACTCCCACCAGCAGTGAAC :III@IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:161 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:855:528 161 chr7 7007257 37 36M chrX 78414518 0 ATTGTTTTTATCTGATACTTATGAGTAAGATGATAC IIIIIIIIIIIIIIIIIIIIBI7B-I8:F@I..I:4 XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1290:516 99 chr13 37833658 60 36M = 37834072 450 GAGAGAGAAATCCAATGAGGGAAAATATTTAACAAC IIIIIIIIIIIIIIIIIIIIIEII<IGIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1290:516 147 chr13 37834072 60 36M = 37833658 -450 CCAAAATGGGATCATGGTGCTGGTCACGCAACTCTG I,I5I@1II8AIIDIIIAI@IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1642:323 97 chr24 11162908 37 36M = 11163078 206 GTAAAACTATTAATAAAAAAGTCTCTAATTCCATAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1642:323 145 chr24 11163078 37 36M = 11162908 -206 CAAAAGAACCCAGATGTTTGGTCAAGTCCAAAGTGA 5IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1683:1429 97 chrUn 77433837 0 36M = 64157695 -13276106 GTGGATTGATGAGTATGTTTAGAATACTTCTGAAAA IIIIIIIIIIIIIIIIIIIIIIIII5II:@III=II XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:5 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:34G1 +HWI-EAS91_1_30788AAXX:1:2:1683:1429 145 chrUn 64157695 0 36M = 77433837 13276106 CCAAGGTACCTGCCATACTTTGTATCTGCCATTCTT ('1+,'$$$30*8III,IH@=C6,IIIIIIIIIIII XT:A:R NM:i:2 SM:i:0 AM:i:0 X0:i:5 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:4T3G27 +HWI-EAS91_1_30788AAXX:1:2:1461:1091 99 chr25 13242402 60 36M = 13242748 382 GGACAGAGAGATGGATCTGGTTGTTGCAGGGGCTGC IIIIIIIIIIIIII=IIIIIIIIII9IFII%I>II: XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:30T5 +HWI-EAS91_1_30788AAXX:1:2:1461:1091 147 chr25 13242748 60 36M = 13242402 -382 GGTGACTCTTCATTCTTGAAACCCAGAGTCTTTGTA BI0<I4IH7I9II3IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1657:512 97 chrUn 47139784 0 36M = 12112010 -35027738 GTTTCTGTTCTGGTTCAACCAAGCGCCGGGTTAGCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIGIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:6 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1657:512 145 chrUn 12112010 0 36M = 47139784 35027738 GTTTTTGGTGACTGCTCAGTCCTTGTGGTGGGAAGA 9I>+I:>;0@2I<IIIIIIIIII@IIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:7 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:620:1408 81 chrUn 117029077 0 36M = 111438972 -5590141 TGAAAGGCACAACGTGCAGGCTTCTTTCCAAAGGGC IIIIIIICI<IIFIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:35027 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:620:1408 161 chrUn 111438972 0 36M = 117029077 5590141 TCGCTCTGCGCAGTGCTCTTACAGCCTACCTGGAAC IIIIIIIIIIIGIIIIIIIIII0FIIDIII%EB9-B XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:110 XM:i:1 XO:i:0 XG:i:0 MD:Z:30G5 +HWI-EAS91_1_30788AAXX:1:2:1733:82 113 chrUn 80913695 0 36M = 116077032 35163337 CCTTTGGAAAGAAGCCTGCACGTTGTGCCTTTCAGC III36IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:35485 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1733:82 177 chrUn 116077032 0 36M = 80913695 -35163337 CTACCGGGAACATCTCTTCCAAAGGCCTGTGTAACG DI<ICIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:68 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1134 99 chr20 11693859 60 36M = 11694158 335 GGAGAAATACTGCATGAGGAACCACACTGTCCTTTC IIIIIIIIIIIIIIIIIIIIIII8IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1134 147 chr20 11694158 60 36M = 11693859 -335 TCTTTACCGGGCAAGGTTGGATGGACCAACACCCTA =++,.FI3III<IIII>IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:798:109 99 chr18 40547545 60 36M = 40547875 366 GTGTGACTATATTAAAAGCCATTAAATCGTACACCT IIIIIIIIIIIIIIIIIIIIIIIIIGIIIIFIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:27T8 +HWI-EAS91_1_30788AAXX:1:2:798:109 147 chr18 40547875 60 36M = 40547545 -366 TCCCCAAACGTTAAAGTTACAATTTTCTGGCCAATA %3=I*IIIC@IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:31T4 +HWI-EAS91_1_30788AAXX:1:2:934:267 99 chr17 72921789 60 36M = 72922169 416 GATCCAATTTTCTTGGGGGCACTTTCGCATTCAGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIDIII=@IB XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:934:267 147 chr17 72922169 60 36M = 72921789 -416 TAAAATCCAAATTTGTAACTTGGATTACTAAGCAAA III@IA8@IEI:IIIIIIII1IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1020:891 83 chr31 20544775 60 36M = 20544469 -342 ATTTTCATTAGCCAAATTTCATTATTTTTGCCATTC IIIFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1020:891 163 chr31 20544469 60 36M = 20544775 342 TATCATCTCTAAATCTAATTCCTGTTTACATCATTG IIIIIIIIIIIIIIIIIGIIIIICIIIIIHI?5EG% XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:913:19 69 * 0 0 * * 0 0 GTNNTAAAGTACATATTTANTANGGACTNAGTTGAT II""IIIIIIIIIIIIIII"II"IIEII":IIII@I +HWI-EAS91_1_30788AAXX:1:2:913:19 133 * 0 0 * * 0 0 NCTTNNACGANGNNNNNNAACACTCTAAATTNAATC "III""IIII"I""""""III>IIIII0.I'"EIII +HWI-EAS91_1_30788AAXX:1:2:1507:1907 83 chr1 40436066 60 36M = 40435686 -416 TTGTGTGAACGTGAGCTGTTTCTTACCTTTCTAAGC =IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1507:1907 163 chr1 40435686 60 36M = 40436066 416 CTTCAACGTTCCTCACTTACCTAATTCCCATGCATT IIIIIIIIIIIIIIIIIIIIIIIIIEIII8D>IIIG XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:640:752 83 chr4 47921547 60 36M = 47921146 -437 TGTGTTTCCTGGCTCTCACCTGTTCCTCACCAATTC IIIIIIHIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:640:752 163 chr4 47921146 60 36M = 47921547 437 ATTTTGCAATGGGCTAGTGGCTTCAGGTCTAGAATT IIIIIIIIIIIIIIIIIIIIHII.(;D:3I#D%3BI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:971:981 83 chr16 55966470 60 36M = 55966172 -334 TGAAATATGGTTTTGTAACCACAGAACAAATATTTC <IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:971:981 163 chr16 55966172 60 36M = 55966470 334 TTTAAAAACATAATAATTTTAAATTTAACAGTTATT IIIIIIIIIIIIIIIIIIIIIIIIIIIFII9II<II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1048:232 83 chr21 19754024 60 36M = 19753694 -366 TTCTTTTGAAGGGAGTTCTGAGTGAGGAAATTTCAC II7II<IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1048:232 163 chr21 19753694 60 36M = 19754024 366 AACTTACATTAGTTTGTCACTCTGTGGGCTACTATC IIIIIIIIIIIIIIIIIIIIIIIIIIII9II7I9II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1671:1210 99 chr6 64578059 60 36M = 64578394 371 GTGTGAACTTAGCCTCTGCGCCACCAGTCTGGTCCC IIIIIIIIIIIIIIIIIIIIIIIIIBIIIIIIEIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:3C21G10 +HWI-EAS91_1_30788AAXX:1:2:1671:1210 147 chr6 64578394 60 36M = 64578059 -371 TTGTCTTTTTTAAAGCAAACAAGTATAAAAAATGTG I:I7BCII<IHIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:817:631 97 chr2 116524282 37 36M chrX 50737545 0 GTTTTCTTAAATTATTAGGGAAATGCAAATCAAAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:817:631 145 chrX 50737545 0 36M chr2 116524282 0 GCAACCTAGGTGCCCATCAAGGGATGAAAGGATAAA @1IF=-;IIIIII9=IIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:8 X1:i:434 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:729:744 99 chr21 9834666 60 36M = 9835006 376 GATGTATAGATTCACTTCTCTTACCAAATCTAGGAA IIIIIIIIIIIIIIIIIIIIIIIII=IIIIIIIHII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:729:744 147 chr21 9835006 60 36M = 9834666 -376 TTTTTGTTTTTTGTAATTTCTCTCTCTTTGTTGGTA 13=2;G<I?74IIIII8IGI<I8IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1237:1450 83 chr8 71412892 60 36M = 71412501 -427 CCTGTGATTTGGTCCTCTCTACTGTTTCGTCTTAAC I?IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1237:1450 163 chr8 71412501 60 36M = 71412892 427 AGACATGGCACCGCTCGTCAGGCTATCCTGAGGCAG IIIIIIIIIIIIIIII?II.II982<;=8/&CG3-I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1534:980 83 chr10 73039720 60 36M = 73039379 -377 GTTCCCATCAGCATCACCCCAGCAGTGACCTTTCAC =I5IIIIHIIIIIII)IIIIIGIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1534:980 163 chr10 73039379 60 36M = 73039720 377 AGAATTTTCTTCATCCCTCAAAATATATTCATATCT IIIIIIIIIIIIEIIIIIII7IIIDICIIIIIIGII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13G22 +HWI-EAS91_1_30788AAXX:1:2:1548:1067 113 chr2 100642496 0 36M chr25 24713322 0 CATTTACTTCTGCTCTAATTTTTATTATTTCCCTCC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:17 X1:i:547 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1548:1067 177 chr25 24713322 25 36M chr2 100642496 0 CTGCGGGTGGGCATGCGAACGGGTGCAGCCACTATG ?%10&IE+IB<44%?-GI;I&IIE@IIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:4T15T15 +HWI-EAS91_1_30788AAXX:1:2:1130:1573 83 chrX 103689553 60 36M = 103689220 -369 TATGAATTGGGCATGAGCTTCCCTACAAAGCACAAC IIIIIIDDIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1130:1573 163 chrX 103689220 60 36M = 103689553 369 AGACTCCACCATATTTTGAAGGTTTTTTTCTGTATA IIIIIIIIIIIIIIIIIIIFIIIIIIIIIII>III, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1534:1966 113 chrUn 37752273 0 36M = 62355913 24603640 GCATCTGCAGCACTGTGGAATTAGAAATAATCTCCC FIIAI3IIIII=IIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:22 X1:i:35 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1534:1966 177 chrUn 62355913 0 36M = 37752273 -24603640 AGAATGGCACAGTAACTTGCCCAAGTTCACACAGCC IFIH,II1III7IIIID<IIIIIIIIIIIICIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:37 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1312:718 97 chr1 162617345 0 36M = 162617707 398 GTTGATTCAGTGTTCGTCCAGCTATCATGAATTTGC IIIIIIIIIIIIIIIIIIIIIIIIIIDIII9III4: XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:2 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1312:718 145 chr1 162617707 0 36M = 162617345 -398 CAGGTCAATTTGACCTTGGTCCTCTTGGAAGAAGAG >I>IE:II/>7I:IIIIII9IIHIIIIIIIIIIIII XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:3 X1:i:2 XM:i:1 XO:i:0 XG:i:0 MD:Z:25G10 +HWI-EAS91_1_30788AAXX:1:2:1307:669 113 chrUn 104714015 0 36M = 78922686 -25791329 CACGCCGGAGCCACCTGTTCGACTCGCTGGAACCAC /;3II?IIIIIIIIIGIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1084 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1307:669 177 chrUn 78922686 0 36M = 104714015 25791329 CCGGAGTGTCCGCCAAGTGGTTCTGGCATACCCGGC 55II4I2@+HAI8II8I6IIIIIAIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1403 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1159:1095 83 chr9 46265823 37 2S34M = 46265502 -355 TCACAATACAAAAAAGCCATTTCCTAAAATCTCTGC 5+IIII$II3.IIII9'IIIIIIIIIIIIIIIIIII XT:A:M NM:i:2 SM:i:37 AM:i:37 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G2C26 +HWI-EAS91_1_30788AAXX:1:2:1159:1095 163 chr9 46265502 37 36M = 46265823 355 TAACATGAACCTTAATGATTAATAATAAGCAGAGTG IIIIIIIIII&II<II;(II8HIIII;293&A+??; XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1318:383 83 chr10 8638091 60 36M = 8637729 -398 ATACCTGCAGAGACAGTCACACACAAACTCAGTTTC I=III9IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1318:383 163 chr10 8637729 60 36M = 8638091 398 ATCACACACATATACATGGTTGCACAATCACACCCA IIIIIIIIIIIIIIIII?I8I>IIE4A.<II@G9H& XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:784:1170 113 chr1 85811713 0 36M chr9 5550045 0 CCGTGCCCATCTTCCTCTACTTTATATGTGGGATGC IIIIIIIIIIIDIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2148 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:784:1170 177 chr9 5550045 37 36M chr1 85811713 0 AGAAATGAGATGAAAAGTACAAAATTAATTGAAAAG IIIII4IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1031:939 99 chr8 66368416 60 36M = 66368765 385 GAGTATTACACCTGGAAGGGAGCTCAGGCCCCTGCC IIIIIIIIIIIIIII=IIIICIIIIIII<IIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1031:939 147 chr8 66368765 60 36M = 66368416 -385 TCACTCCCGGTACTTAATTTTATTTCACGATCTAAA IB/I/D<IIII3IIIIIIIIFIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1451:948 99 chr5 77535219 60 36M = 77535609 426 GAAATACATGATTTGGATGTTAGCTATTAAAACGTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIB>IIE XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1451:948 147 chr5 77535609 60 36M = 77535219 -426 AACTTCCTACGCTCTGCTTTGCCAGCCCGGGGTTCA *&II+/I5$IEIGI+IIIIDIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1576:1096 113 chrUn 77144523 0 36M = 110343632 33199109 AGGAAGCACGTGCCGGACACGCCGGAATGACCTACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:59 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1576:1096 177 chrUn 110343632 0 36M = 77144523 -33199109 TTCCGTCTGTTCGGGGTGTGGTTCCAGCATCTCATG I3IEIDC2I@-IIIIIII8IIIFIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:1288 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1081:432 99 chr4 92234827 60 36M = 92235121 330 GGAAAGGTCACATACTGTATGATTCCATTTATATCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1081:432 147 chr4 92235121 60 36M = 92234827 -330 TGTAACCAATAGGGAAAACTGTGTGATGGGCACACT 'AIIIIE8IIIIIIIIICIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:855:1511 113 chr11 1638829 0 36M = 2492822 853993 CTAGATTCAGCCATTTCTCCAAGGAGCCCTGGTTCC IIIIIIIIIIIIIIB8IIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:11 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:855:1511 177 chr11 2492822 37 36M = 1638829 -853993 TGAAAATATTCTGCCCATGGGGAGATGGGAACATAA FIIIIIII7II3I7I5<IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1573:607 99 chr17 55113910 60 36M = 55114226 352 GTTCTGCCTCTATTATTTCACTCTAAGTAAAGAATC IIIIIIIIIIIIIIIIIIIIIIIIIIIII?IIIHII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1573:607 147 chr17 55114226 60 36M = 55113910 -352 GAACAAAAAGTTGTACAGTAGGATTCTTGGCTTGAA IIIBIIIIFI4IIAIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:21C14 +HWI-EAS91_1_30788AAXX:1:2:755:53 81 chr18 72824205 0 36M = 72823817 -424 AAACCAGACAAGGAGAACACAAAGAAGGAAAATTAC III?IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:3 X1:i:144 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:755:53 161 chr18 72823817 23 36M = 72824205 424 ATAAATAAAATAAAAAATGTAAGAGGAGAAATTACA IIIIIIIIIIIIIIII=II?I@IIIIEII?<IH7II XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:4 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1749:245 97 chr23 4252049 37 36M = 4252324 311 GGAACAGTTTTTAACTACAAATTCCATTTCTTTAAT IIIIIIIIIIIIIIIIIIII?IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1749:245 145 chr23 4252324 23 36M = 4252049 -311 GATCTTTTCAAAGAACCAGATTTTGGTTTCATTGAT IIIIIIIIIIIIII8IIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:19 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:684:745 83 chr24 32204954 60 36M = 32204597 -393 AAGAAAGTCCTGGGATTCATACTGATCAAAGTCACC IIIIIII2IBGIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:684:745 163 chr24 32204597 60 36M = 32204954 393 GAGGTTTCAACCCTTCAGTTAAAAGCAAAACCTCTG IIIIIIIIIIIIIIIIIIIIF7GIDI1;3>;I=I5. XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:385 83 chr5 94665792 60 36M = 94665464 -364 CATTTTAAAAATTATTTTGCTCAGGAACAATTTTAC .IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:385 163 chr5 94665464 60 36M = 94665792 364 AGAGACTTGCGTGCTTATAGACAACACATCTCAAGA IIIIIIIIIIIIIIIIIIIICFIII8F:8?=@1..> XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:824:966 83 chr5 33041415 60 36M = 33041034 -417 CAACTGTGATGGAAATAGTTGGGAAGTGCAGGGATC II@IIIIIIIIIIIIIIIAIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:824:966 163 chr5 33041034 60 36M = 33041415 417 CAATAGTGGCATCCAATCTAGTAAATAGCCTTATTC IIIIIIIIIIIIIIIIIIIGIII>IIIEIIII(DI< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1675:685 99 chr3 107346094 60 36M = 107346437 379 GAGGCCTTTTTCACATTTTACGGAAGCACGGATTGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1675:685 147 chr3 107346437 60 36M = 107346094 -379 AAGACAGAAAGACGTATTTACCAATCCTATTGTATC (I;I2I;IIIIIIIIIAIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0C35 +HWI-EAS91_1_30788AAXX:1:2:599:249 99 chr5 932810 60 36M = 933163 389 GAGAGGTGAAGAGAGCGAGTGAGCACGAGGATGAGG IIIIIIIIIIIIIIIIIIIIIGIIIII5II;II:II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:599:249 147 chr5 933163 60 36M = 932810 -389 CTAGCCATAAAGGCAGCCGAAAAGTGTAGAGAGCTT %6II*%9/IIIIIFIIB(IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1484:611 99 chr15 25586209 60 36M = 25586612 439 GAATGCAGCCTGAGATAGTACCGTGTTGTGGAGATC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIAIBII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1484:611 147 chr15 25586612 60 36M = 25586209 -439 TATTTTCCCTTCATCATTTTGAAAACATCCATTCCT IIIII8IIII7IIE@IFIIDIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:776:516 99 chr16 24283986 60 36M = 24284288 338 GAAAATGAATATGCCTTGGGGCATTTCACATTCTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:776:516 147 chr16 24284288 60 36M = 24283986 -338 ATATAGTAGTATATCACTCACCCAGGGACAATTAAA IDI?IIIICIIBIGIIIAIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:770:1607 81 chr16 30834601 23 36M = 30834360 -277 CAAAACTGAAACTCTATAGTCATTAAACAACAACTC 5IIII>@IIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:770:1607 161 chr16 30834360 37 36M = 30834601 277 TTAAATATCTTTTCATATGTTTAAGGGCCATTTTAA IIIIIIIIIIIIIIIIIC0IIIII8HHIIIIIII7I XT:A:U NM:i:0 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:807:49 113 chrUn 22404556 0 36M = 18166268 -4238288 AACTGAGAGGTAGTAATTTGTGTACTTAGTTAAAAC IG1/IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:4 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:807:49 177 chrUn 18166268 0 36M = 22404556 4238288 AGGGAATAGTGGTCAGCGGCAATGAGTCCATGGATG 9IIIGI+DI*II2IEIHIIIII0III@IIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:2 X1:i:2 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1747:1093 81 chr14 82219507 23 36M = 82219131 -412 TAAGCCATTAAATTTGTGGTAACTTGTTATAGCAGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1747:1093 161 chr14 82219131 23 36M = 82219507 412 TTTGCAGATGTGAGTAAGGATCTTCAGATGGGGAGA IIIIIIIIIIIIIIIIIIIIIIIII1III8<IID@, XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:6 XM:i:1 XO:i:0 XG:i:0 MD:Z:24G11 +HWI-EAS91_1_30788AAXX:1:2:859:1659 97 chrUn 113345452 0 36M = 84579453 -28765963 GGCTTCTTTCCAAAGGGCGAGTTGGGCCCCACAGCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIII2IIGI= XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:32513 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:859:1659 145 chrUn 84579453 0 36M = 113345452 28765963 TACAGCCTACCGGGAACATCTCTTCCAAATGCCTGT @<III4:IIIHIIIIIII9IIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:99 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1364:176 99 chr3 116853565 60 36M = 116853891 362 GCTTTTTAGAGAGCAAGACAGTAAGTAGCTACATAA IIIIIIIIIIIIIIIIIIIIIIIIIII@IIIIIIIF XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1364:176 147 chr3 116853891 60 36M = 116853565 -362 AGTAAGAGCCATTACGACACAAGGTGCTGACCCAAT (/.IIIIHIIID6IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:987:1538 83 chr2 24698310 60 36M = 24697962 -384 CTCCCCCAATCAGCCTCTTCAAAACCTACTCCCCAC I1IIIIIIIAIIIIIDIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:987:1538 163 chr2 24697962 60 36M = 24698310 384 AGAACAAAATGGGAGGACGGTACAAATCCAATTAGG IIIIIIIIIIIIIIIIIIII6;@;I3IAII96>44E XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:866:995 83 chr6 82866168 60 36M = 82865833 -371 TCACATGTGGGGCATTGATTTCGGTCTCACCCCCCC DIIII2I8IIIIIIFIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:866:995 163 chr6 82865833 60 36M = 82866168 371 GAAGTTTCCAATCTAGAGATAATGTCAAGGGTCTCA IIIIIIIIIIIIIIIII+IIIII=IIIH.1+BIII9 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1053:355 83 chr22 48606133 60 36M = 48605795 -374 GCAGGCCCCTGAAAAGGTGGTGTCTCTTTCCTGAAC IIIIIIIIICIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1053:355 163 chr22 48605795 60 36M = 48606133 374 ATAAGCAAAACTTCCACGAATTCTTCTACTTGTGTT IIIIIIIIIIIIIIIIII<6IIIIIIICCI@IIG4I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1593:653 99 chr23 4961703 60 36M = 4962001 334 GGCTTTGGTTCTTGGAAGGCAAGAAAAAAATGGGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIEI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1593:653 147 chr23 4962001 60 36M = 4961703 -334 GCTCTTTTGTGTTCCAGGCATTGTTCCTGGTGCTTT II=IAICEIHII5IIIIIIIIIIIFIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1600:836 83 chr16 72747851 60 36M = 72747482 -405 AAGTGAACTCTACCACACGGGGAAAGGTGTGTGGGC IIIIIE9I9IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1600:836 163 chr16 72747482 60 36M = 72747851 405 CCTATGTGAGCAATGGCAGTGAGTCTCAATCACCCC IIIIIIIIIIIIIIIIICI>IEII7I5)I?0)7I<* XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:35A0 +HWI-EAS91_1_30788AAXX:1:2:1305:861 99 chr16 50204994 60 36M = 50205377 419 GCTAATGAAGCCACTACACTGGACAACTCTTCAAGA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII?6II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1305:861 147 chr16 50205377 60 36M = 50204994 -419 CGTTTAGGGTAACACCAGCTACTGTAACAAGTAAGT 233F7I9FE/II9IIGBHEAEI2IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1141:518 83 chr23 33915222 60 36M = 33914822 -436 ATAATTTCTTGCGTCTTAAAGATGATCACACAAATC IIII>I:IIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1141:518 163 chr23 33914822 60 36M = 33915222 436 TTTGATACCTCCTTATAAATAACCCGAGGGGTAAAC IIIIIIIIIIIIIIIIDIIIHIIII:2ICIHE449< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1788:1107 69 * 0 0 * * 0 0 GNANNNNNGAAAAAGGTGNNCNNCTCTNNNTNGCCA I"I"""""IIIIIIIIII""I""IIII"""I"IIII +HWI-EAS91_1_30788AAXX:1:2:1788:1107 133 * 0 0 * * 0 0 AGCANNTGAANTNNNNNNCTATNTCACCCGCNCNGC IIII""IIII"I""""""II>I"BI8II%8#"I"9I +HWI-EAS91_1_30788AAXX:1:2:560:1291 83 chr19 5960258 60 36M = 5959906 -388 TAGACTAACAACTGCAGTCTTACAATCTAACTTATC IIII7IIIBIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:560:1291 163 chr19 5959906 60 36M = 5960258 388 TTAGAGGCTAATATTTGAGGCTAACTATTCCAAGCC IIIIIIIIIIIIIIIIBFIIIIBIII>IIGI/4/<B XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:970:631 113 chrUn 77037390 0 36M chr7 43788091 0 CTGGAACCACCACCTGGACATGCCGAAACCACCAAC I%I;IIIIIIIIII+IIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:8 X1:i:15 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:970:631 177 chr7 43788091 37 36M chrUn 77037390 0 TTGGTTCAGGCCTGTCTGGCAGATGGTTCATGCAAG I3C>?IBCI4II8ICI3IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1720:1202 83 chr15 7804587 60 36M = 7804207 -416 GCAGTTACCCTAACATTCTCCCTACACACAGATATC III,7IIIIIIIIIII@IIIIIFIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1720:1202 163 chr15 7804207 60 36M = 7804587 416 GCCCAGCCACGGGCTCCACGGGTTAAGAGAAGATGC IIIIIIIIIIFIIIIII4IIII3I.,I2:;1>)6C& XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:714:1665 99 chr6 9710572 60 36M = 9710898 362 GAAACTGAAATCTGCTTCCTGGTCACATCTTTCTTT IIIIIIII9IIIIIIIII7IIIIIHI<IIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:714:1665 147 chr6 9710898 60 36M = 9710572 -362 GTTCGTGTATGTCTGTCTCATTTACTACGTTTTTCT *6?IF5IIII<I4IIIFIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:814:1126 99 chr24 44733519 60 36M = 44733879 396 GCAGAAGCAGTGATCTGGGCTCCCACTTGGGTAAGG IIIIIIIIIIIIIIIIIIIIIIIIFIIIIII@III@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:814:1126 147 chr24 44733879 60 36M = 44733519 -396 AGTGCAGAAGTAATGCAAGAATTAGAAAATCATCAT II4I5IIIIIGIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:745:701 65 chrM 8940 37 36M chr27 37372041 0 GAGCCTTTTACCACTCAAGCCTAGCCCCCACACCCG IIIIIIIIIIIIIIIIIIIIIIIHIIIIIAIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:745:701 129 chr27 37372041 0 36M chrM 8940 0 TGCCACGAAAAATGTTGATCCGTATACTCCATCTGA IIIIIIIIIIIIIIIIIIIIIIIII:HIII1III%4 XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:24C11 +HWI-EAS91_1_30788AAXX:1:2:1298:1272 99 chr6 49851344 60 36M = 49851675 367 GTCTGTTTTCAAGTGGATTTCTAAAACACATCTGCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII+?A XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1298:1272 147 chr6 49851675 60 36M = 49851344 -367 AATCTAATAAATATTAGAACAAATTAGAATTGCATG II<74IIIIII?IDIIIIIIIIII>IIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:753:1141 97 chr24 45386161 0 36M chrUn 25976826 0 GCTTGGAGTATTGTCCTCCACCCCTTCACTCTGAGC IIIIIIIIIIIIIIIIIIIIIIIIIII@IIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:4 X1:i:259 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:753:1141 145 chrUn 25976826 0 36M chr24 45386161 0 ATAGTCCATTTTCTGATAGCCTCTTATTCTCTTAGG I5=FD+IIII?EI8GIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:2 X1:i:23 XM:i:1 XO:i:0 XG:i:0 MD:Z:28T7 +HWI-EAS91_1_30788AAXX:1:2:1780:1676 99 chr10 54758093 60 36M = 54758469 412 GAAAAGATGAAGATGTCAAATCAAAATTTTGGAATT IIIIIIIIIIIIIIIIIII:II9IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1780:1676 147 chr10 54758469 60 36M = 54758093 -412 CACAGCACACAGAATGATTCTTTCCATTCCTTATCA II8?8IFIEIIEII@=IIII4IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:700:965 99 chr4 77364721 60 36M = 77365069 384 GTTCTTTATGCCTGGGCACTGGCAAGACAGGAGGGA IIIIIIIIIIIIIIIIIIIIIIIIGI>IIIIDI5IB XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:700:965 147 chr4 77365069 60 36M = 77364721 -384 TTTTAAACTTGAACTGGTTTGGTAAAGCTTTACATT IF?GIIIG9IIIIGEIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1122:782 65 chrUn 109183502 23 36M = 66026557 -43156945 GTTTCACAGGCCTTTGTAAGTGATGTTCACGGTAGG IIIIIIIIIIIIIIIII<A:IIBIIEII)III3:I) XT:A:U NM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:66 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1122:782 129 chrUn 66026557 0 36M = 109183502 43156945 TGGGTGTTGTACATCGCCCTAGAGCTTCAATGCAGA IIIIIIIIIIIIIIHIIIII;I-I7>I219+1+5$4 XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:34C1 +HWI-EAS91_1_30788AAXX:1:2:806:1149 83 chr22 45999765 60 36M = 45999385 -416 CAATAAGGGGTCGGCTATATCAAATGTGGTATGTTC +IIDIIIIIICFIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:806:1149 163 chr22 45999385 60 36M = 45999765 416 GACCAAGGAAGTAGTCATTGTGCATGATGCTCTGGG IIIIIIII?HIIIIII?IIFIAI.I<:IG9>I?,.< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1452:1353 99 chr10 58807606 60 36M = 58807990 420 GAATTTAAAGTTCAGTATCCAGTTCATAAAAGATTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1452:1353 147 chr10 58807990 60 36M = 58807606 -420 CTCAGACCTATCTAAGCTGAAATGACAGGAAAGAAA 7?6III5E+III<IIDD7IIII3IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1581:1006 113 chrUn 87848415 0 36M = 108561411 20712996 AAAGGTGGAAGCAAGATGCTTTGGGGCCCAACTCGC IIIIICIIIIIIIIII@IIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:6 X1:i:55 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1581:1006 177 chrUn 108561411 0 36M = 87848415 -20712996 TCTGCTCTGGGTGTGCTACATTGCCCTAGAGCTGAA 8@III430III6IIIIII=II@IIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:9163 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:740:1110 99 chr26 28484134 60 36M = 28484454 356 GAAATGACTGTATTAAGTATTTAAGAACAACTTCGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIII'I XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:8A27 +HWI-EAS91_1_30788AAXX:1:2:740:1110 147 chr26 28484454 60 36M = 28484134 -356 CTGCGTTTTCCCTGAAGTGGCAGTTTGTGGAGAAAC 76I;I,I=2IHI2IIIIIIIIII=IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1688:233 83 chr28 14171283 60 36M = 14170902 -417 CAAAAATAAAAAACCTAGAAATCAGAGGTACTTTTC 3IIIIIIIIIIIIIIIIIIIIGIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1688:233 163 chr28 14170902 60 36M = 14171283 417 AACCTGTGGACCCAGGCTGCTGAAGTGGAGCATGCC IIIIIIIIIIIIIIIIIIIIII6IIGII7IIIII1I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1167:1000 99 chr2 99368079 60 36M = 99368455 412 GTTCCTCCAGAGAAACAGATTCAGTAGGGGAAAAGA IIIIIIIIIIGIIIHIII;IIIII9IIIIII>III4 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1167:1000 147 chr2 99368455 60 36M = 99368079 -412 TTTCCCATAAAAATTACCATCACATTGGCATACACA AIC*H%I=IIIIICIIIIIII9IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1609:1692 113 chrUn 79778129 0 36M = 37727851 -42050278 CCTGGGATAATTTGGACAGCATTAGATTGTTTTACC IIGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:37 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1609:1692 177 chrUn 37727851 0 36M = 79778129 42050278 GCTGCTCTCTGCCTCAGACACGGTGCCCTCTGCGTG BI8IIHI@IIIIIIIIIIIBIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:79 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1447:703 97 chrUn 98336078 0 36M = 86781748 -11554294 GAGACGTTCCCGGTAGGCTGTCAGAGCACTGTGCAG IIIIIIIIIIIIIIIIIIIIII2>E86)II@IIA*& XT:A:R NM:i:1 SM:i:0 AM:i:0 X0:i:136 XM:i:1 XO:i:0 XG:i:0 MD:Z:21A14 +HWI-EAS91_1_30788AAXX:1:2:1447:703 145 chrUn 86781748 0 36M = 98336078 11554294 CAGAAGTCCTACTTCAGCCAGATCAGGCCTGCAAAG 6IIIGIII@EI90@IIII&IIIIIIIIIIIIIIIII XT:A:R NM:i:0 SM:i:0 AM:i:0 X0:i:34311 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1461:1145 83 chrX 69768894 60 36M = 69768541 -389 AAATAAATAACACCTTGATGTTAAGATATTAGATGC IIIIIII<IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1461:1145 163 chrX 69768541 60 36M = 69768894 389 TAAAGGCAATTTGATTGGACAATATTGGCAATGCCT IIIIIIIIIIIIIIIII0IE?2IIHFIIII*IB@8+ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1702:751 83 chr3 29339305 60 36M = 29338902 -439 TGCTCTTCTCCCACCCCTGGCTCCCTGGGGAGCTCC AHIEIIDIIIIIDIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1702:751 163 chr3 29338902 60 36M = 29339305 439 CAGCAGTTTGCAGCTGGCGCTGCCCGGCGCCGCCTA IIIIIIIIIIIIIIIIIIIIHIIII.DI,III>D8/ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:690:1215 99 chr4 46913196 60 36M = 46913525 365 GAAGTTTATTCACATGTGACAAATGAGATCAAAGTG IIIIIIIIIIIIIII7I3III8AII4EIIII>5&@- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:690:1215 147 chr4 46913525 60 36M = 46913196 -365 CACAGATGAGCATATTCCTAAAAAGAAGGACAATGA *(a);III+III.IIIII'E2IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1719:746 83 chr20 18695923 60 36M = 18695597 -362 CAAAACAAACATCCCAGGTATCTTAACTGACCATCC 1IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1719:746 163 chr20 18695597 60 36M = 18695923 362 TGCTTTTAAGAAGGAAAACTATGGTGCCAATAGTCT IIIIIIIIIIIIIIIII9IIIIII(I@I6-III(8I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 diff -r 6555560039d6 -r fc1be2626130 test-data/sam_bw_filter_0002-yes.sam --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sam_bw_filter_0002-yes.sam Wed Sep 16 15:19:35 2009 -0400 @@ -0,0 +1,646 @@ +HWI-EAS91_1_30788AAXX:1:2:1670:915 99 chr9 58119878 60 36M = 58120234 392 GACCCCTACCCCACCGTGCTCTGGATCTCAGTGTTT IIIIIIIIIIIIIIIIEIIIIIII7IIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1670:915 147 chr9 58120234 60 36M = 58119878 -392 ATGAGTCGAATTCTATTTTCCAAACTGTTAACAAAA IFIIDI;IIICIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:835:1201 83 chr19 7640648 60 36M = 7640277 -407 AATTTTATTAACAAATGCTAAAACTTGGAAGCAACC IIIIIIIIIIIIIIIHIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:835:1201 163 chr19 7640277 60 36M = 7640648 407 TGAGCCGATGACCTTAACCAAGACTTCATCAAGAAG IIIIIIIHIIIIIIIIIII:@I49IGF88:0EI>7- XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:6A21C7 +HWI-EAS91_1_30788AAXX:1:2:1402:1012 99 chr15 67776677 60 36M = 67777024 383 GTCTTAACACAAGAATCATGAGATTGACCTTCATGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1402:1012 147 chr15 67777024 60 36M = 67776677 -383 TTTAGTGTCCATCCCTGGAAGTCTTTGGGTCGTCCA <8/II5I;?CG0IIIFIIIII?IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1428:881 99 chr5 78959538 60 36M = 78959849 347 GGATAAATGGGAATAAGACAATAAAGGACCTAAGAG IIIIIIIIIIIIIIIIIIIIIIII>IIIIIII>IAI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1428:881 147 chr5 78959849 60 36M = 78959538 -347 CCTTTGTAGAGTGGAACGGTCATAGATCTAAGTTTC III>5ICII9I:IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1624:138 99 chr14 19993808 60 36M = 19994089 317 GTGGATTTGGGCCGTAGTACACAAAGGGATCAATTG IIIIIIIIIIIIIIIIIIIIIIIICIIICII9IIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1624:138 147 chr14 19994089 60 36M = 19993808 -317 CCTGGGAAGGCAGAAAGTTATTTGGGAGGTTATTAC >2-IIIIIIIIIIIIIIIII3IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:600:851 83 chr15 52551374 60 36M = 52550994 -416 GGAATCTTCTCAGACTTACCTTACCCATTTTCAATC IEEIIIIII?8IIIIIIIII4I;IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:600:851 163 chr15 52550994 60 36M = 52551374 416 TCCACCATCCCTGGGTCCCTGAATGGGCCTGAGTCT IIIIIIIIIIII/II+I5.II.A2D%0A*I15A2=I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1189:764 83 chr3 50738340 60 36M = 50737960 -416 CACTAGCTGGCAAAAAAATAGGAACCTCAGTCATAC II7>IIGIII<IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1189:764 163 chr3 50737960 60 36M = 50738340 416 AATAGCTACTGTGTCAGATACTAATTCTGTTCAATT IIIIIIIIIIIIIII:III7HD58IICC9AI?+2IF XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:984:1321 83 chr22 20811874 60 36M = 20811543 -367 AAGCGCAGCAATTCCACTGTCTGCCTCAGAAGACAC (I5I='IIIIIIHIIII@IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0C35 +HWI-EAS91_1_30788AAXX:1:2:984:1321 163 chr22 20811543 60 36M = 20811874 367 GCCTTCTTCTGTTCCCCCTCCCTTCCCTGAATCGGG IIIIIIIIIIIIIIIIIIIIIIIIIIII/A2>A5(0 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:959:227 99 chr2 101947377 60 36M = 101947673 332 GCACAGATGTCAGCTCAGCGCAAACCTTCCTCAGCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:959:227 147 chr2 101947673 60 36M = 101947377 -332 CCCGTTCCCGACTTGAGCCCCTTTGTTACCGTAATC II>I@GIIIIHIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:863:1159 99 chr20 16056387 60 36M = 16056736 385 GAACATACAAGTCTCCAACAGGTCCTTATTGTCAAA IIIIIIIIIIIIIIIIIIIIII6IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:863:1159 147 chr20 16056736 60 36M = 16056387 -385 ATCTCATGAACATGGCTTTGCATTTCTAGCTTCCAG IIIGDIIIIFII1ICIIIIIIIIGIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1096:438 99 chr23 12570811 60 36M = 12571094 319 GTTGTTCATGTTGTTATAGTGTTATGGTGATTGCAT IIIIIIIIIIIIIIIIIIIIIIIIIE?IIIII&;7' XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:35G0 +HWI-EAS91_1_30788AAXX:1:2:1096:438 147 chr23 12571094 60 36M = 12570811 -319 ACAGAGATCCAGGAGCAACCACCTGATCTCCAGGTA @@I@III<IIIIIIIIII;IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1430:987 83 chrUn 49157387 60 36M = 49157036 -387 TTGTAAGATACACTTTTCCCCCCACATTCTATCATC IHFEIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1430:987 163 chrUn 49157036 60 36M = 49157387 387 TACAAAGGATTTCCCAGTCTATAAAGCATTCTAGGG IIIIIIIIIIIIIIIAIIIIII=@9BG:IIDI.8/E XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1147:736 99 chr1 112740356 60 36M = 112740695 375 GACACTCAAAGAATTTCTCAATTTTATGATTTACTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII5 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1147:736 147 chr1 112740695 60 36M = 112740356 -375 TTTTAGTTTTGTTTCAGCACACTTTTTTTTTGGATT 6I=I=IBBC@87IHIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:994:293 99 chr27 4817510 60 36M = 4817805 331 GAAGTTAAATTATTCTCTGAAGTCACAGGAGTCGTC IIIIIIIIIIIIIIIIIIIIIIIIIIIBIIDII3II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:994:293 147 chr27 4817805 60 36M = 4817510 -331 ACCTCAGTCTTCCATGGCCCCCACCACATTTATTGA 27AF/I<;DI>HII2III'IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1168:628 99 chr4 27471068 60 36M = 27471384 352 GTCCCCATCCTTGTTTTCTCTACTATTCTTGTCTCT IIIIIIIIIIIIIIIIIIIIIDIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1168:628 147 chr4 27471384 60 36M = 27471068 -352 ATGGATTCTTATCCTTCCTCCTTGTATATAATGTAT I82III=IIIIDIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1549:1237 83 chr11 10358091 60 36M = 10357735 -392 CTAATGAAAAACATGGAAAAGAAAGAAAAACAGTTC 9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1549:1237 163 chr11 10357735 60 36M = 10358091 392 TAACTCCAGGAGATTATAACCAATTTCTTTCCCAAA IIIIIIIIIIIIIIIIIIIIII5IIIIIIIIII1H6 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1578:679 83 chr11 55516487 60 36M = 55516099 -424 TGGCATTAAATATGAGATTGAAGTTTTAACTGTCAC 3IIIII=III9IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1578:679 163 chr11 55516099 60 36M = 55516487 424 ATATTCTTTCATAATAAACTGGCAATCTGGTAAGTA IIIIIIIIIIIIIIIIIIAIIIIFII)I:G?III5I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:938:810 83 chr16 21308291 60 36M = 21307938 -389 CACATGACCAGGCTTGTTCAATCTGATCATTCCATC II<IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:23A12 +HWI-EAS91_1_30788AAXX:1:2:938:810 163 chr16 21307938 60 36M = 21308291 389 TAATGCTTGCAGCAACCCTGGGAAGGTTATTATCCA IIIIIIIIIIIIIIIIIIIIII6DIIIIIII8I9@& XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:605:679 83 chr9 45603812 60 36M = 45603475 -373 TTTTCTCCCCTCTCCTTATTCACCCCATTTTTTTAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:605:679 163 chr9 45603475 60 36M = 45603812 373 AATTGCGCGGTGTCTTTCTGTGAACATAGAGTAGGC IIIII,IIIIIIIIIIIIIIIIIHF9I8=5(F;B3, XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5G30 +HWI-EAS91_1_30788AAXX:1:2:1711:1368 83 chr14 23898303 60 36M = 23897924 -415 ACTCAGGTCCTCTCCCTTACAGTCTCCCGTCATCAC II@II:?DII5IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1711:1368 163 chr14 23897924 60 36M = 23898303 415 GGTTTGCTTTGGGCAAGGCTAAGTGTGCAAGGACAC IIIIIIIIIIIIIAI.I?@IIAICI?IIII,I:88B XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:679:1132 83 chr8 91991535 60 36M = 91991179 -392 GTTAAACAGACGATTGTCCTGTCTCTGTTTAAACTC .@A&IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0A2C32 +HWI-EAS91_1_30788AAXX:1:2:679:1132 163 chr8 91991179 60 36M = 91991535 392 CCAGGAACAACATGGTCCTGAGTGGAAAGCAGGAAA IIIIIIIIIIICIIIBIIIIIICII?IAID:IIB8= XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:876:1069 83 chr18 15004036 60 36M = 15003687 -385 TTCATGGTCATCAGCATCAGTTACACTATTGATGTC IICIIIIIIIAII?IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:876:1069 163 chr18 15003687 60 36M = 15004036 385 ATCTTCATTTCGTTAGGGAAACTTTTAATCATCCCA IIIIIIIIIIII/IBII)IIIIIIIIIIIICIIBID XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1327:654 83 chr2 94157304 60 36M = 94156969 -371 CCTTATTTCAGTTCTGCGTGCTTGTTTAAGTTCTAC IIIBIIGIIIIIDIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1327:654 163 chr2 94156969 60 36M = 94157304 371 ACCACCTGGAAGGGCTATAGGAAAGAGTTCAACAGG IIIIIIIIIIIIIIIICI>II3E<I8I6IIHII7HI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1186:417 83 chr7 94241079 60 36M = 94240722 -393 CTCCACACTTAATCTCTCTCATTCTGGACAGACTTC ICIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1186:417 163 chr7 94240722 60 36M = 94241079 393 CTCCAGCATTTTCTGAAGAGGAGCTCAAGAACGCAA IIIIIIIAIIIIIIIIII@IIBIIII97I=IIHE5I XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:33A2 +HWI-EAS91_1_30788AAXX:1:2:1046:1574 99 chr4 21581052 60 36M = 21581406 390 GGAAAACTCAATAAACGATTATAATAGAAACAAGCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1046:1574 147 chr4 21581406 60 36M = 21581052 -390 TGGGCTTATCATTTAGGAGCTCTGAAAAAGGGGAAA 2IEIB1II;IIIC?IIIIID@IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1548:1215 99 chrX 61056203 60 36M = 61056579 412 GGAGGTGCCTCCTTTCCCTCTCCAAACCCCCTCCTT IIIIIIIIIIIIIIIIIIIIIII:AGIIIIIIIII6 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1548:1215 147 chrX 61056579 60 36M = 61056203 -412 ACCACTCAATAACTATGGAACTTGGGCAAATTAGTT B40:I8GIIAI5IIIGIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1220:866 99 chr4 8576382 60 36M = 8576716 370 GGTTTGGTAGCTCACTTTGATTTATTGCTAAATAAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1220:866 147 chr4 8576716 60 36M = 8576382 -370 AGTATTTGACATTGTTTAACTTTCAGCTTCTAATAG IE6I9IAIFIIICIIIIIIIGIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:609:368 99 chr6 69331746 60 36M = 69332001 291 GAAAACAAGAGAGAAAATCCTTAGTAACAGGTGGAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIICIICII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:609:368 147 chr6 69332001 60 36M = 69331746 -291 TAGATAGAAAAACTTACAAATCCCAGGGAAGTATTT IIIIIIIIIIIIIICIIIII<IIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:15C20 +HWI-EAS91_1_30788AAXX:1:2:1631:63 83 chr24 12862480 60 36M = 12862137 -379 AAATCTCAGTGACCCTAAAATCTTTCCCTCATAATC IIIIIDIIIII?IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1631:63 163 chr24 12862137 60 36M = 12862480 379 TAACTCAGGCTCAGGTTTGCTGGTGCACATTTATCT IIIIIIIII$II<IIIIIII.II'IIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9T26 +HWI-EAS91_1_30788AAXX:1:2:849:162 83 chr1 119971050 60 36M = 119970720 -366 CTGCAGGATTGAGCCAAAACTGTGCATGCATTCACC IIIIIIII?IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:849:162 163 chr1 119970720 60 36M = 119971050 366 ATCTCGTGGCTCATCTGGGTTTGGGTTCTGGTTTTG IIIIIIIIIIIIIIIII<ICII+I?IIIIIG8III4 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:827:1141 99 chr15 32000448 60 36M = 32000769 357 GCAGGAAAAATACAAGAGAAAGGGGTGGTCTGGTAG IIIIIIIIIIIIIIIIIIIIIIIIIBIIIIIIIII; XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:827:1141 147 chr15 32000769 60 36M = 32000448 -357 GAGAATCAACTGCATTTTAGACGGTGCTGGGTTTAC II8IIDII=I-IIIEI4III@IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1583:435 83 chr26 30514638 60 36M = 30514314 -360 CTCGTCCCAGGCAGTAGAAGTGACAGGTTCAAAGTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1583:435 163 chr26 30514314 60 36M = 30514638 360 AAATGGTGAATTTTACACTATGTAAGTTATATCTCA IIIIIIIIIIIIIIIIGIIIIII;I7IIFI:IIFH, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1510:1131 83 chr19 29430163 60 36M = 29429839 -360 CCCAAGTAGAGAATTCAGACAGGCAAATACAAAGAC >IIIII>IIIIIIG@IIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1510:1131 163 chr19 29429839 60 36M = 29430163 360 TTCACTCATTCGACAATTGTCAATGGTACCCCTATT IIIIIIIIIIIIIIG7III>IIHIIA53IIII4*EI XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:11A24 +HWI-EAS91_1_30788AAXX:1:2:1089:1022 83 chr19 18406162 60 36M = 18405890 -308 AGGACTAGAGATGCAAGAAGCAGCACCTAACACTTC IIIIIIIIIII;IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1089:1022 163 chr19 18405890 60 36M = 18406162 308 TAAAATAAAATAAAAAATAAATGCTTTTTAAATGAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII@IIID XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1618:729 99 chr7 65638065 60 36M = 65638366 337 GTCATGGAACCTGCAAAATCCTGCAGGATTTGGTGA IIIIIIIIIIIIIIIIIIIIIIIIIIIDIIIII>I; XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1618:729 147 chr7 65638366 60 36M = 65638065 -337 TATATGTCTGTGCTTATGTTCCCTCTCTTGTAGACG IIIIII>H+H?IIIIIIIIFIII?I9IIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1154:769 83 chr2 91146327 60 36M = 91145957 -406 CTAACTTCAGGTTAGTGACTCTTAGTTTATTTGTTC IIIIIDHIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:1A34 +HWI-EAS91_1_30788AAXX:1:2:1154:769 163 chr2 91145957 60 36M = 91146327 406 GAATGGGCTTGAGATACTCATTATCCTCCGATATAT IIIIIIIIIIIIIIIFIIIFIIEIGFIIII?I3I=I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1079:687 99 chr17 51783267 60 36M = 51783523 292 GGGACATTGAACCTGGACATTAGGTCTGAATGGTGT IIIIIIIIIIIIIIIIIIIIIIII-IIII6III<II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1079:687 147 chr17 51783523 60 36M = 51783267 -292 CTTATCAGTTGGGGGAAAAAAACAAAGATGAACTAC A0&I7&ID1IICIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:29A6 +HWI-EAS91_1_30788AAXX:1:2:498:210 99 chr20 45564137 60 36M = 45564488 387 GTATCCAGCAAAGCCTAGCGGGGTGTACCATCGCTG IIIIIIIIIIIIIIIIIIIIIIIIII>IIIII?IIG XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:498:210 147 chr20 45564488 60 36M = 45564137 -387 CAGTCTGCACAAAAAACAGAACTTCATCTCATGGGG +H:3,4I*I0IIIIIIIIIIIIIFIICIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:958:1309 83 chr18 56913664 60 36M = 56913390 -310 TGGGTTTCTTCTCAGTTAACCTGTTTCTAAGGGTGC IIFIIIIIIIIIIIIHIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:958:1309 163 chr18 56913390 60 36M = 56913664 310 CTTACCATTGACATAAATAGTAACAGAACTCCTGTT IIIIIIIIIIIIIIIF8(-EAF@IB83IC9:I:,3< XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17G18 +HWI-EAS91_1_30788AAXX:1:2:1515:950 99 chr3 84883580 60 36M = 84883913 369 GCATTATTCATAGCAGCCAATATATGGAAGAAACTT IIIIIIIIIIIIIIIIIIIIIIIIIIIHIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1515:950 147 chr3 84883913 60 36M = 84883580 -369 GATTAGAGGGCGTTAGGGGAAAGGGGAAGAGTTGGT I;18IIIIIIII:-IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1294:1387 99 chr2 100764844 60 36M = 100765170 362 GGGAAGAAGAAAGGCTCAACCATTCTAGCATCCCAG IIIIIIIIIIIIIIIIIIIIIIIIII?II@IIIICI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1294:1387 147 chr2 100765170 60 36M = 100764844 -362 AAGTTTAAAGGAATATGGAAATGCAAGTCTACTGCA III<DIIIIIIII:IGIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1578:105 99 chr4 10424438 60 36M = 10424812 410 GAGTTCAGAGGCTTCGATCCCAGCTCTGGAAGGATG IIIIIIIIIIIIIIIIIIIII2IIIIIII&3II-II XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:19T16 +HWI-EAS91_1_30788AAXX:1:2:1578:105 147 chr4 10424812 60 36M = 10424438 -410 TAGGGCAATTTAGTGCTCAGAAGGTGGGAAACAAGG 6IIIIIIIEIIIIIIAIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1003:1336 83 chr23 9257139 60 36M = 9256798 -377 AATGTGATATTCATATATAAAAAGGTTTGATGTGGC II?IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10C25 +HWI-EAS91_1_30788AAXX:1:2:1003:1336 163 chr23 9256798 60 36M = 9257139 377 GATACAGGACAACAAGCGTAAACTAGAATTGTCCTC IIIIIIIIIIII:III>I13IAI6.I;I>I1FGD1E XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:862:93 99 chr26 18865331 60 36M = 18865673 378 GAAGTGAAGGATAAGGTGAAGTTGTAAACTGCCTGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:862:93 147 chr26 18865673 60 36M = 18865331 -378 CATGAAAAGCTGTGAAAAGTAACAAGAAAGTATGGC 1I9IIIIIIF4I9IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1348:1250 99 chr3 65208819 60 36M = 65209192 409 GTCTCTTCCAGGCAATCTAGGTATTTTTCTAACATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1348:1250 147 chr3 65209192 60 36M = 65208819 -409 GTCATATTGTATTAGGGCCTAACCCTAAAGACCTCA C>BB=I50I7II=IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1508:1116 83 chr7 27480949 60 36M = 27480595 -390 AGTGTGGCTGGAAAGGAGGATGGCTAGGTTGAGAGC II9IIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1508:1116 163 chr7 27480595 60 36M = 27480949 390 AGGCATTGTTCTAAGTGTTAGGAAGGTAGAAGGGAA IIIIIIIIIIIIIIIIIII1I=(a)III.(I9.6II'G XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:921:33 99 chr8 85153436 60 36M = 85153782 382 GATTGAAAGTGTCCTAGAGACTAAATCGAGTTTTTG IIIIIIIIIIIIIIIIIII<IIIFIIII7IIIIIIC XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:14C21 +HWI-EAS91_1_30788AAXX:1:2:921:33 147 chr8 85153782 60 36M = 85153436 -382 GGCTCTGATCTTAATTTTTGCTCCATTAACTTTAAA 7IIAGF;IDIAIII??IIIHIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:899:377 99 chr19 25446520 60 36M = 25446849 365 GAGACTCTTAGAGAGTCTGTAGGTCAGGTTTGCTCA IIIIIIIIIIIIIIIIIIII@IIIIIIIII)IIII0 XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:30G5 +HWI-EAS91_1_30788AAXX:1:2:899:377 147 chr19 25446849 60 36M = 25446520 -365 GCCTCAGGAATCCTGTGCAGAAAAGTGTCCTTAGTA @GIIIIIIII0IIHIII5IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:8G27 +HWI-EAS91_1_30788AAXX:1:2:843:490 83 chr11 34797143 60 36M = 34796802 -377 AATGCTTCCTCATTCATTGACTAAGACCAGTATTCC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:843:490 163 chr11 34796802 60 36M = 34797143 377 CTCATTTAATTCAGTATATAAGGTATTATGCACGTT IIIIIIIIIIIIIIIIIIIIIAI4CIICI5IGI=II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1269:978 99 chr7 60276467 60 36M = 60276819 388 GTCAGAGAGGGAATGGAGAGTCAGGTCATCAAGTTT IIIIIIIIIIIIIIIIIIIIIIIIIII:II*8IIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1269:978 147 chr7 60276819 60 36M = 60276467 -388 AAAAGCAAGAAGTCAAGAATATCTTCAGGTTTTTCC III@A+IIIIIIIIIIIIIIIEIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1177 99 chr4 79152164 60 36M = 79152494 366 GACTGTTGTGTACCTGAGCCTCTTGGCCATCTAATT IIIIIIIIIIIIIIIIIIIIIIIII:II=III8,II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1177 147 chr4 79152494 60 36M = 79152164 -366 ATATTTTTTTTTAAGATTGACTTCACGGACTTCATC H.92I8I;::5IIIII;IIIIIBIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1750:1887 99 chrX 76366699 60 36M = 76367056 393 GACTGTATACTTAGTTTTATTTATCATTGTCCTCCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1750:1887 147 chrX 76367056 60 36M = 76366699 -393 GCAGCTCCATTTATGTCTGTTTTATCAATTGAGTTT GDIEI7IGI;IIIIIIIBIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1533:959 99 chr2 66393107 60 36M = 66393460 389 GGGGAGATTTACACAGCATCTTATCCCTACATAAAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIDI@I4I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1533:959 147 chr2 66393460 60 36M = 66393107 -389 ATATCTAGTCCCAAAATATCAAGACTGTGGGGGGGT I1GBI;IICDIGIIII0I8IIIIIIII?IIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1712:1909 83 chr4 59672928 60 36M = 59672561 -403 AATGTGGATCTAGCCATTGCTTCCCTTACCCGTGAC IIAI2III<IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1712:1909 163 chr4 59672561 60 36M = 59672928 403 TGAGGCATAAGTTGAGTAAACAGATGCAAGTGGGTG IIIIIIIIIIIIIIIIIIIIIII?IIEA5IBIIIFI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1145:1955 83 chr6 49524371 60 36M = 49524028 -379 ACATAAATAGCTCTTCATTATTTGAAGATAATTCTC IDIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:4G31 +HWI-EAS91_1_30788AAXX:1:2:1145:1955 163 chr6 49524028 60 36M = 49524371 379 TAAAAGAAAGTCATTTACTGAATTCAACATACTGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIH@I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1045:1305 83 chr5 24857286 60 36M = 24856947 -375 TCGAATCTTTGTCGAGAGCTGAATGGCTATATGTGC >IIIIBI2IHIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1045:1305 163 chr5 24856947 60 36M = 24857286 375 CAGAAGGGAAGAAAGGGTGCAGGATGCTACACAGAG IIII<IIIIIIIIIIIIIIIDII1IIII>G9B2I6I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:676:657 99 chr4 66313600 60 36M = 66313984 420 GTTTAAAAACCTACATTCTGAGGAACTACAAGCTAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:676:657 147 chr4 66313984 60 36M = 66313600 -420 ACGTATCAACTCAGGGGCCATGCGGCCCAACGTGGC .:I3I1IIAI+IIIIIFI;I>IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1669:1456 99 chr3 49913297 37 32M4S = 49913632 371 GTGGGCTTTTCACATATGGCTATTATTATATTTTGG IIIIIIIIIIIIIIIIIIIIIICI+II&I(II2()% XT:A:M NM:i:1 SM:i:37 AM:i:37 XM:i:1 XO:i:0 XG:i:0 MD:Z:9C22 +HWI-EAS91_1_30788AAXX:1:2:1669:1456 147 chr3 49913632 37 36M = 49913297 -371 TGATATCTTTGTCTGGCTTTCGAACCATGGTAATGC 018<<1I21-?3I3III>IBIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:31G4 +HWI-EAS91_1_30788AAXX:1:2:877:503 83 chr4 43276862 60 36M = 43276528 -370 TTTGTCAGGCAGTAAAATACAGTGGTCTCTTTGATC IIGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:877:503 163 chr4 43276528 60 36M = 43276862 370 TTATAGCCAAGGAGCAGGGTAGGAGTCAGTGGATAT IIIIIIIIIIIIIIGAIII1IIIFI@I:II.I4I?I XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:18A17 +HWI-EAS91_1_30788AAXX:1:2:1073:1549 83 chr26 13342615 60 36M = 13342287 -364 GAAGCTGAGACCAGAAGTTTGAAAAATGTTGACAAC IIIIGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:28A7 +HWI-EAS91_1_30788AAXX:1:2:1073:1549 163 chr26 13342287 60 36M = 13342615 364 GAATAGACACTATTTGTAAAGAAAAAGTATTGACTA IIIIIIIIIIIIIIIIIIIIIAEIIII,9III4BI; XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:677:503 99 chr17 22254545 60 36M = 22254840 331 GTTGCATGCTGTATCCTTTTCCATCCCTTCACTTTC IIIIIIIIIIIIIIIIIIIIIIEIIIIIII8IIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:677:503 147 chr17 22254840 60 36M = 22254545 -331 TTTTGGTTCCTATCTCTTAATATTTTGTGTATTTAT I>IICIIIIIFIIIHIIIIIAIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:656:1210 83 chr14 91469947 60 36M = 91469581 -402 AGAGTAAGTGAAACCCAAATAGGCAGAAAAGGAAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:656:1210 163 chr14 91469581 60 36M = 91469947 402 ACAGATTGTAGTTTGGACTATATAACAAATACCAAT IIIIIIIIIIIIIIIIIIIDIEIIII8I?I9>:53< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1612:1385 99 chr10 65547655 60 36M = 65547992 373 GACTATGGGAGGAGGAGAACAGAAGGGAACCAAGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIHIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:35C0 +HWI-EAS91_1_30788AAXX:1:2:1612:1385 147 chr10 65547992 60 36M = 65547655 -373 AAATGTCTTTGAACATCATGGTGCTATTGCAGAATA IIIII6IICIIIIIIHIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:831:1954 83 chr19 5278641 60 36M = 5278301 -376 TACGCCCTCTCCCTGGGGTGGCCCTCATCTAATGCC IIIIIIIFIEIIIAIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:3A32 +HWI-EAS91_1_30788AAXX:1:2:831:1954 163 chr19 5278301 60 36M = 5278641 376 GTACCATCCAAGATCCTCAAATATTTATGTCTGAGT IIIIIIIIIIIIIIIIIIIIIIIIIIBI6III2I&A XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1458:1304 99 chrX 21922142 60 36M = 21922525 419 GTACTGCTAGCCCCTCTAAATCTACACACTCAAAAT IIIIIIIIIIIIIIIIIICDIIIIIIIIIIIFCIEI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1458:1304 147 chrX 21922525 60 36M = 21922142 -419 TCTGGGGAATTTTGCTCTCAGGGAACATTCAGCAAT 0I-IIIIIIHI;III8I?-IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1242:773 83 chr7 68834772 60 36M = 68834448 -360 GTGGGGTTTTTTTGGTTTTCTAAATTTTAATAAAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1242:773 163 chr7 68834448 60 36M = 68834772 360 CCGCCTATAGAGCTCTAATGAGGGGCCGCGTTTAAC IIIIIIIIIIIIIIIIIIII=IIHIIIBIIIII4H= XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:553:1150 99 chrX 83392118 60 36M = 83392432 350 GGAGGAGAGTACACACAGCATGAGCTGGCTCTTACC IIIIIIIIIIIIIIIIIIIIIIGIIIIAIIIAIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:553:1150 147 chrX 83392432 60 36M = 83392118 -350 AGTTAAGACACTCCCTCTTGTCTAGTGGCACTGGAG AI9IIIEHB5IAIIII?I1IIIIII.IIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1656:1012 83 chr16 17381368 60 36M = 17380979 -425 GTTCAAAGATCAGTTTTTAACAATTAATAGGGCTCC IEIIIIIIICIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1656:1012 163 chr16 17380979 60 36M = 17381368 425 CCTGGGTTCAAATTCCAGCTCTGCTATGTGAGCTTG IIIIIIIIIIIIIIIIIBIIIIIII5IIH?IIIII= XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:951 83 chr18 78667252 60 36M = 78666954 -334 GACACTTTTACCTACCTCCATTCATTTTATTCTCAC II+I6IIIII/IFIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:951 163 chr18 78666954 60 36M = 78667252 334 CACTGGGAGCGTCAGGATAGGAAGACTTTTCCAAAA IIIIIIIIIIIIIIII5IHII<II4I=III0I,1@0 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1007:810 99 chr7 35869555 60 36M = 35869883 364 GAATCACAGTGCTGGAATCAACTTCCCCACCAGGGG IIIIIIIIIIIIIIIIIIIIIIIIIIII=II:IDII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1007:810 147 chr7 35869883 60 36M = 35869555 -364 TCCGAAACTCCTTCTTCATAGGTGGGGGTCACCCTT 1;IIIIIIIIII@I:;IIFIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:634:1196 83 chr9 77287671 60 36M = 77287326 -381 AATGGAACAGAGCAGGATGCTGTGAGAGTTTATCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C5C27 +HWI-EAS91_1_30788AAXX:1:2:634:1196 163 chr9 77287326 60 36M = 77287671 381 ATAAATAATAATAAAATAGAATAATTATAATAATAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIHIIE@ XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:961:809 83 chrX 36653305 60 36M = 36652992 -349 GCCAGAAGTGGTGCCTTTCCATGTCACAATGGATGC IABIIIIIEIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:961:809 163 chrX 36652992 60 36M = 36653305 349 CAACTAATTCAACTTATAATTATTCAACTTATTTTT IIIIIIIIIIIIIIIII9IIIIIIIIIIIIEIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:709:665 99 chr28 28945755 60 36M = 28946043 324 GCTTTGTATCAATGCAGGATCCTGGGCATCACTGTG IIIIIIIIIIIIIIIIIIIIIII*00I?IIIII,I, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:709:665 147 chr28 28946043 60 36M = 28945755 -324 TGGAGGAGAGCACTGTCAGCTCTCCTTTCCTGGCCC ,IIII4IIECIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1245 99 chr9 64435894 60 36M = 64436287 429 GCCCCTACTCTGCTGTTTTAAGCCTCGTGCCCTGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFBI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1245 147 chr9 64436287 60 36M = 64435894 -429 AAAAATCATGGAACTACTGGCCTGTGCTCAATTAAC IIIII.5G8IIIII3HIHIIII?IGIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1498:676 83 chr19 18827597 60 36M = 18827241 -392 ACACCAGGACTTAAGGTTACCACTTAGAATTAGTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1498:676 163 chr19 18827241 60 36M = 18827597 392 AAAGACACAGGTTCAGCTTGTCTGCATAGAAACTAA IIIIIIIIIIIIIIDIIIIIBI@II@I6III9>H?9 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1415:875 83 chr1 76298171 60 36M = 76297829 -378 ACCACAGAGTGAGAACACTTGGCCCCAGAGTTGGTC >I7IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1415:875 163 chr1 76297829 60 36M = 76298171 378 AATGACAGAGTGGGCTCCTGTCTTGGAAAGGTGTTA IIIIIIIIIIIIIIIIIIIIIIII'C+EII70I=I8 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:636:1654 83 chr4 6289843 60 36M = 6289506 -373 ATGATTTATGTAATCAAGGAGTTATTAAACAAAGAC IIIIIIIIIIIIIIIIIIIIIII8IIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:23C12 +HWI-EAS91_1_30788AAXX:1:2:636:1654 163 chr4 6289506 60 36M = 6289843 373 ACTTAAATAGCATGAGCAAGAAAGGACAGCAAACAC IIIIIIIIIIIIIIIII.IIIIIIIIIEBI0IIIDI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1508:1518 83 chr27 9034212 60 36M = 9033853 -395 CCACACACATACACACAACAACCCACAAACTCCCAC &EI*III9IAIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1508:1518 163 chr27 9033853 60 36M = 9034212 395 AGCTAGAACTAAGGTCAAGGCAGGCAGTGAAGTTTC IIIIIIIIIIIIIIIIIIIIIHII@DI*I/3C+BI+ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1343:473 99 chr8 61268888 60 36M = 61269254 402 GTGACTCTGGCTTAAGCATCTTACCCTCTGTATAAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII5III9 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1343:473 147 chr8 61269254 60 36M = 61268888 -402 AAAGGGAAGCAATTTCCTAAGTTTTTTCTAGAACAT DIIIDIIIFIII>IIIIBIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1024:236 83 chr15 49101753 60 36M = 49101413 -376 GAGGAAAGGTAAAAAAATACACATGTAACTTCAAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1024:236 163 chr15 49101413 60 36M = 49101753 376 GGTAACGATGGGACTAATTTGGCTTCACATGGAGTT IIIIIIIIIIIIIIIHIIIIIIIIIIII3I>I:III XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1729:1071 99 chr3 78578575 60 36M = 78578929 390 GGAATATGGATGTGAACAAGATAGAAAAAGTCCAAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIBII94I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1729:1071 147 chr3 78578929 60 36M = 78578575 -390 GGGCAGGGGCTGGATTCTTACAGCTTTGTCCATCAT III17IIDII5IIIIDIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1588:725 83 chr20 29609699 37 36M = 29609339 -396 GCACATTTACCTGCTGGTAGTATTTAAACTTTGCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1588:725 163 chr20 29609339 37 22M1I13M = 29609699 396 AGGTCTCAACTCCTCATCCCCACCCCCCAGCCTCCC IIIIIIIIIIIIIII:IIIIIIIIIIII*:II6III XT:A:M NM:i:3 SM:i:37 AM:i:37 XM:i:2 XO:i:1 XG:i:1 MD:Z:22A5C6 +HWI-EAS91_1_30788AAXX:1:2:944:177 99 chr7 15629437 60 36M = 15629792 391 GAATATGGAAGACCTGAACAACACAATCAACCAAGT IIIIIIIIIIIIIIIIIIIIIIIIIDIIIIIII=I1 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:944:177 147 chr7 15629792 60 36M = 15629437 -391 CTCCTGGGATGAAACTAAAATTGTGCTGTATGAAAA <08I>IIIIIIIIIIFIIII,5IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:815:671 99 chr18 28563846 60 36M = 28564192 382 GTGTGTTTGTGCTCAGTGGTGGCTGGGGCTGGAGTC IIIIIIIIIIIIIIIIIIIII&II3D14@IIIIIF- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:815:671 147 chr18 28564192 60 36M = 28563846 -382 CAGATATTTTAATGATAATCACATTTTCAATACAAA 'I0IDI,IIGIIIIIIII9IAIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1445:171 83 chr22 49688260 60 36M = 49687914 -382 AGAACATTATAGAACTGCTTTTTTCAAACCAGATAC IIIIIII<IIIIIIIIIII<IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1445:171 163 chr22 49687914 60 36M = 49688260 382 TGAATGACATGGATATGTATAGAAAGTTGTCATATT IIIIIIIIIIIIIIIIIIIIEIII=I:I/G*%H:II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1380:1247 83 chr15 67477565 60 36M = 67477190 -411 TGAACCCCACCCTGTGCCAGGGTGGGGGCAGGCTTC <IIIIIII<III6IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1380:1247 163 chr15 67477190 60 36M = 67477565 411 GGAATGCACGCAGCCAGCTGTATGCTCACATTAGCT I=IIIIIIIIIIIII?IICI?4III9I/;+EG-2C3 XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:1A34 +HWI-EAS91_1_30788AAXX:1:2:559:1049 99 chr30 8613410 60 36M = 8613783 409 GTTTTTAAAGTCAGATGAGCTGTGTTCAAAGGTAGG IIIIIIIIIIIIIIIIIIIIIII6IIIIIIC$IC-- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:559:1049 147 chr30 8613783 60 36M = 8613410 -409 TAGAAAGGAAGCAAAATCTAAAACAACAAACAAAGC BI>III=IIII+IIIII(IIIII6IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1070:202 83 chr6 65434195 60 36M = 65433844 -387 CTTGGCAGAAAGTTCTGTGGAGTTAGGGGAACTATC I=5IIIIIIIIICIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1070:202 163 chr6 65433844 60 36M = 65434195 387 CTACCCCTGTTGAATAATAACAATAACGACAGTTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIA2@.F:FII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1444:970 83 chr30 4909358 60 36M = 4909058 -336 ATGGGGCTTGTTAAAATGCATGTTCTGGTCCCAACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1444:970 163 chr30 4909058 60 36M = 4909358 336 AAGGGAACAGCAGAGGTAGTCTCAGAGCCATGGAAA IIIIIIIIIIIIIIIICII8III4ICIBI4III463 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:888:1721 83 chr28 33436016 60 36M = 33435676 -376 GATTTTTAAAAAGCAGGCATTAATGCAGATCAGCAC II@E9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:888:1721 163 chr28 33435676 60 36M = 33436016 376 ACTGCAAAAGCAACTGCTTCTTCTTTCAGATTTTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIII6IIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1535:917 83 chr14 86071679 60 36M = 86071350 -365 GCCCTGAAGGCCCGGCCTGGAGCGAGGGCCAAGGTC IIFI1IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0A35 +HWI-EAS91_1_30788AAXX:1:2:1535:917 163 chr14 86071350 60 36M = 86071679 365 ATTGTTGGAGGCAAAACTAGTAGCTGAAGAGTTAAT IIIIIIIIIIIIIIHIII;II7IDII4II=B=I::@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1243:1115 99 chr7 2472852 60 36M = 2473160 344 GAGACCATTGTTCTGCCCACTACAGGTTTGAATGGG IIIIIIIIIIIIIIIIIIIIIII=II=IIIIIIHI; XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1243:1115 147 chr7 2473160 60 36M = 2472852 -344 TCAACCTGGTTTTGGTCCTGGCTGACTCTCCACCCA 0H@.II<FA6II>II1II8IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1654:1680 83 chr7 43150282 60 36M = 43149917 -401 CTAACTTTGTCTTTATTTCCTCTGGGACATACAAGC IIIIIAIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1654:1680 163 chr7 43149917 60 36M = 43150282 401 TTTGTTCCAAAAACCTTCTCAGTCCCCACGTTGCTA IIIIIIIIIIIIIIIIIIII,IIIIII=II,DAFI& XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1609:620 99 chr31 20888302 60 36M = 20888687 421 GGTCCTAGTGGAACTTGAAGACATTTTAGGAGATGT IIIIIIIIIIIIIIIIIIIIIIBIIIIIII5IIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1609:620 147 chr31 20888687 60 36M = 20888302 -421 TAAATGAGGGCACTGAGCAATAGTGTCACTGAGCTG IBIE)IIIIEIII=I;IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1708:1857 99 chr1 128754664 60 36M = 128754974 346 GTCTACTCACCTGTTATTAGGGGAAAGTCTAATGGC IIIIIIIIIIIIIIIIIIIIIIIHIIIIIIIII7CI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1708:1857 147 chr1 128754974 60 36M = 128754664 -346 ACTGAAGCGAGTCCCTAGACTCACCCTTCCTGACGC (./IFIIIIIIIIIIIIIIIII>IIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:20G15 +HWI-EAS91_1_30788AAXX:1:2:1480:1039 99 chr3 99988287 60 36M = 99988574 323 GTATGATTCACCTTAGAGAGGGGAGAAACCCCACTG IIIIIIIIIIIIIIIIIIIIIIIIII?IIIIIIHII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1480:1039 147 chr3 99988574 60 36M = 99988287 -323 TTTCAGCCGAAAGCACACCTGTGCGAATCTGATGTG =I6IIIA1IIIIII*I2IIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:8T27 +HWI-EAS91_1_30788AAXX:1:2:853:685 99 chr3 25386001 60 36M = 25386369 404 GAATGTGTTCATGGTGATCACAGATAAGCGTAACAG IIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIA XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:853:685 147 chr3 25386369 60 36M = 25386001 -404 TCACACTGCACATGTTTGTACTGTTCTTAAGCTCCA 6>:I;H-II:GIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1720:542 99 chr28 10455455 60 36M = 10455783 364 GCTTTGTGACTACCATGAGGCCTAAGTAAACCATCT IIIIIIIIIIIIIIIIIIIIIIIIII@IIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1720:542 147 chr28 10455783 60 36M = 10455455 -364 CCCACATTTATGCTTTTGATATCACAATTTATGTCT I039II@;+I+II2IIDIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1738:808 99 chr4 30829932 60 36M = 30830303 407 GTGCTCCTTTTTCTAAGAGCAAGTTAAATGTTTATG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1738:808 147 chr4 30830303 60 36M = 30829932 -407 TGTAGGTCATTGAGGGAGTTGTTACTGTAGCATAAA 88649H>=?5>IEIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:578:1129 99 chr3 109664597 60 36M = 109664885 324 GTTGCAACCACATGCAAAGACTTATTGACTTTCCCA IIIIIIIIIIIIIIIIIIIIIIIIII(III'IIHI? XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:30G5 +HWI-EAS91_1_30788AAXX:1:2:578:1129 147 chr3 109664885 60 36M = 109664597 -324 GAAAGGCATTAATGCCTAAAATAAACACAGACAGGA &I&I=?%IIIIICI4BIICIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C15C17 +HWI-EAS91_1_30788AAXX:1:2:749:663 83 chr1 144501310 60 36M = 144500947 -399 ACAATGATCTAGAAGGTAGGTTTTACTTTCATTTAC IIIIIII@IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:749:663 163 chr1 144500947 60 36M = 144501310 399 AGAAAAAAAAAGATATTAAAGTGGGGAGAAAAATAG IIIIIIIIIIIIIIIIIIIII7IIII5IHAE?3A9C XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1134:880 83 chr11 15523160 60 36M = 15522809 -387 TTATATGCTACAATGAATTTTCTTTAAAACAGGATC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1134:880 163 chr11 15522809 60 36M = 15523160 387 ATTATAGCACTCAAGAAATTGCTGCTGTTTTTGCGT IIIIIIIIIIIIIII12IIIIIIII?IIIIII)G6I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1300:1495 99 chr28 16045269 60 36M = 16045663 430 GTATTCATTCCATAATTATTTCTTAAGTGCATGCTA IIIIIIIIIIIIIIIIIIIIIIIIII-IIIIIIII7 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1300:1495 147 chr28 16045663 60 36M = 16045269 -430 TTGATTTGAGATATGCACTGATAATAATAATAATAA I5;I6=2>I9III7=5?58IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:964:1558 99 chr1 54819618 60 36M = 54819982 400 GGTGGCAGACTCACAGGTTGAGGATGCATTTGACGA IIIIIIIIIIIIIIGIIIIIIIIIIII4III4IDG9 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:964:1558 147 chr1 54819982 60 36M = 54819618 -400 AGACCTGTTTGGGAGGGAGAACAAAGGATGAGCTGG II15:-I+.AIII<IGBIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1372:812 99 chr3 79518145 60 36M = 79518429 320 GACTCAAAGCAAGTATGAGAGAGAGAGAATGAGTGA IIIIIIIIIIIIIIIIIIIEI;IIIDI/IIIIIIIH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1372:812 147 chr3 79518429 60 36M = 79518145 -320 TTCAAGCTGCTGGATACCTCTAGTCCTGCGTTTATC /9IGCIIIII:IIIIIIIFIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1364:1610 99 chr14 79263090 60 36M = 79263430 376 GCTTGATAAAAGTGCTATGTCTGCTGGCACGGTTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIAIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1364:1610 147 chr14 79263430 60 36M = 79263090 -376 TTAAGCTCTTTTCAGAGGCATAAAATTCTCATAGAT ?IIIIIIIE>67IIIIII&IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:748:716 99 chr15 67406696 60 36M = 67407044 384 GAGCAAGTGGTGAGGAAAAAGGAAAAAGACTAACGA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:748:716 147 chr15 67407044 60 36M = 67406696 -384 AGTACAAAGTATCTAGAAACAGATCTAACTAAACAG I68I4IIII8II5IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1178:638 83 chr8 11855234 60 36M = 11854910 -360 TCTCCAGGACAATCCAGCTGCGGAACAATGAGAAGC :I@IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1178:638 163 chr8 11854910 60 36M = 11855234 360 CAGATTAAATCAATTAGAATTCAGGGGGCAACACAG IIIIIIIIIIIIIIIDIIIIIIIIIIIIH6FII=8G XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:884:1170 83 chr6 64392331 60 36M = 64391995 -372 TGCTTGGAAAAGGCCCTGGCTAAAAACCAGTCAGTC II1F2IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:884:1170 163 chr6 64391995 60 36M = 64392331 372 AGTTGAAGTTGGGGAAGAGATGGGTCAGTGTTTTTT IIIIIIIIIIIIIICII7IIIIIIII+IIHIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1740:879 83 chr24 9043542 60 36M = 9043129 -449 TTGCAGCACTTTAAAGATTGTTCCATTGTCCTCAGC 9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1740:879 163 chr24 9043129 60 36M = 9043542 449 ACCTGTGACTTAATCTACCTGTAATGAGTGAGGGAG IIIIIIIIIIIIIIIIIIIIII2>II/I@@6AID-E XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1690:1211 99 chr27 28697691 60 36M = 28698025 370 GTTAAATGTTTAAATGCCTGTGTAGGAGATGTCGTC IIIIIIIIIIIIEIIIIIIIIIII>IIIIIIIIHII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1690:1211 147 chr27 28698025 60 36M = 28697691 -370 TAAGCATTTGTTGAGGAAGATAATTTCCATTTAAAT II0+II<ICIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1583:1240 83 chr9 53940252 60 36M = 53939909 -379 GAATCCATTTCTAGTAAAAGACATGGATTATTTTTC IIIBIIIFIAIIIIHIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1583:1240 163 chr9 53939909 60 36M = 53940252 379 GTCAAAGTCACAATGTCCATCACACTGTAGCTGAAT IIIIIIIII?II@IIIII;II0I>I;I=FIB+H,61 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1671:566 83 chrUn 23136659 60 36M = 23136303 -392 ATACTTGAATAGCACACATATAGAAAGAAGAGTGAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1671:566 163 chrUn 23136303 60 36M = 23136659 392 AAGGTTAGCTGGACTTCCTATGCGGCATCTCATGGC IIIIIIIIIIIIIIIIIIIIIIIIIIDIIII:IIDI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1028:686 99 chr8 17127041 60 36M = 17127307 302 GTAAGTGGAGCATTGTAGGCAAGACACCTCAACTCC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1028:686 147 chr8 17127307 60 36M = 17127041 -302 CAGTCAGACCAAAATTGGGAGTGAGGACTGATTATT III@IIIIIDIIIIBBIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1072:893 99 chr14 11799682 60 36M = 11800055 409 GTTGCTTCTGAATTCAAATCCTGGCTTCGATCTTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIII0IIIII- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1072:893 147 chr14 11800055 60 36M = 11799682 -409 AAGAAGGTGACATCCGAGTAATGACTTGAAAGTGAG :IE?2IB>I=;I1IIIII8IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1247:170 99 chr23 30466664 60 36M = 30467002 374 GAAACTGAGTTGCTCCCACAGATGAGGAAATACTGT IIIIIIIIIIIIIIIIIIIIIIIIHIII@II@IIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1247:170 147 chr23 30467002 60 36M = 30466664 -374 AGTTATAACCTGTGAATACAACCTGGTAACTGCTTC II94ICI>II:I7IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1269:1201 83 chr18 18783069 60 36M = 18782724 -381 CTCACATCTCAGACCTTCTTTCTGGAGTCATTTTTC I@IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1269:1201 163 chr18 18782724 60 36M = 18783069 381 CAGTAAAGTGCAAAAGGGAAAAGACAGAATGAAAAG IIIIIIIIIIIIIIIIIIIIICIHIBICBII?IF9I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1434:1080 83 chr17 40637104 60 36M = 40636780 -360 ACAGTCAGGGCAGGAGGCTGACACTGCTGCTTGCTC IIII/I>IIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1434:1080 163 chr17 40636780 60 36M = 40637104 360 TAGATTTCCCAGTAACACAGTTTAGGATGTACTCAC IIIIIIIIIIIIIIIIIIIIIIIIII>IIIIIIIFI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:906:1786 99 chr4 101671836 60 36M = 101672159 359 GGTGATCCGGGCAGATAGCTATGGGTATTTGAATTT IIIIIIIIIIIIIIIIIIIIGIIIII@III0CEIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:906:1786 147 chr4 101672159 60 36M = 101671836 -359 CACAGACAGATTTTCTTCACCAAACAACAAAGTACG -I3IIIIIIIHFIIIIIDIFEIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:812:1388 83 chr21 23230527 60 36M = 23230178 -385 ATAATCATCTAAACAAGAGTGGGAGAGTAAATATTC IIIII5IE.3IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:812:1388 163 chr21 23230178 60 36M = 23230527 385 GTTAGTGTTTATCCTTTTCTAGAGTGGATTAACATT IIIIIIIIIIIIIIIII-IICA5III99II5405II XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17G18 +HWI-EAS91_1_30788AAXX:1:2:1490:147 83 chr8 60741676 60 36M = 60741393 -319 TATATTATCCTCTAATTTTTTTCTCAAATCTTCCTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1490:147 163 chr8 60741393 60 36M = 60741676 319 TCTGTCCTTCCCTCCATTCTTTCCCAGTGCAGTTCT IIIIIIIIIIIIIIIIIIIIIIIIIGIIII6IIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1218:1143 83 chr7 26001391 60 36M = 26001035 -392 TGCCTTGTGTCTGGGTTCATCGTCTCTGAGCTGGAC 0IE;5@I<IBI@IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1218:1143 163 chr7 26001035 60 36M = 26001391 392 AGAGAGAAATAAGGCCCAGGGGCAGGCTGCTTGGCA IIIIIIIIIIIIIIIIIIIIIII<II=II=IIII61 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1660:635 99 chr3 102828807 60 36M = 102829170 399 GGATGTTTATTAATTATATTATATATGTATATTATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1660:635 147 chr3 102829170 60 36M = 102828807 -399 GAGCAGAGAAGCTTCATGCAAAAATAACCACTTAGC 9=I/@IIIIIGII>II9IBIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:660:975 83 chr19 27427509 60 36M = 27427209 -336 GACACACACTCTGCATTTTGATACCCTGCTTTATCC IIBIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:660:975 163 chr19 27427209 60 36M = 27427509 336 TGCATATGAGTCTATAATACGTGGTGACCCAAAAAA IIIIIIIIIIIIIIIIIII&3I1II9GIII32I8BI XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:19T16 +HWI-EAS91_1_30788AAXX:1:2:964:915 83 chr21 40989788 60 36M = 40989445 -379 AATCAGAAACGTAAACATTATATCATAAAGAGGATC IIIIIIIIIIIIIIIIIIAIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:964:915 163 chr21 40989445 60 36M = 40989788 379 GTAACAGAATCTAGGCAATACAGTTTTTAACTTTCC IIIIIIIIIIIDIIIIIIIBI/I6IIIIIIIIIFBI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:958:1970 83 chr23 47815085 60 36M = 47814830 -291 TAAGAAAAAAATGCAATCTCTTGAAAGGTGTTTTGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:958:1970 163 chr23 47814830 60 36M = 47815085 291 CTTCCAACAATTGGATAGACAATTTATATCTAAGCC IIIIIIIIIIIIIIIIIIIIIIIIIIII>IIIFHII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1143:803 83 chr15 10493867 60 36M = 10493524 -379 GACATGTCAGATTCCCACCTGTTTCCCGACGTTCTC IIIIFIDIIIIHEIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1143:803 163 chr15 10493524 60 36M = 10493867 379 TTGGGATGACGGGGACATTTTCTGGAGGGAATGAAC IIIIIIIIIIIIIIII:IIIIII;373I4/9II88B XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1485:193 99 chr24 36426868 60 36M = 36427211 379 GGAAGAATTGGATATGATTTGCTTCGTTTCGTGTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1485:193 147 chr24 36427211 60 36M = 36426868 -379 TTTGAAATTCAAACTTAAAAGACAAATATTGAATAA ::2IIII?7=IIII3FIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:634:806 99 chr16 11794041 60 36M = 11794372 367 GCCAACATTTCACTTTTCTCTTCTTCCTAAGAGAAT IIIIIIIIIIIIIIIIIIIIIIIIIIII8B)I-9HI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:634:806 147 chr16 11794372 60 36M = 11794041 -367 TTTGTATGTTCTGTCTGGAACTATATTCTGTTTTAC 9:<F?I8GIII9II<IIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1124:426 99 chr7 20982917 60 36M = 20983283 402 GATATAGACATAAATTATTGATATGTTTGTAACTGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIGIIGI5I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1124:426 147 chr7 20983283 60 36M = 20982917 -402 ATTATTGCTCTAAAAAAACAGTAACAGTTATCTTTC I:4I;I8>258IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1042:1530 83 chr11 41005020 60 36M = 41004681 -375 TTGCAGTCCATTTTCTCTAGGTTGCTACCACACTTC IDIIIIIIIIIIIIIDIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1042:1530 163 chr11 41004681 60 36M = 41005020 375 TATAGTATAATTTATTTAAAAAGTTATGTCAAAATA IIIIIIIIIIIIIIIIIIIIHDCIIII;IIIG7>IF XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:22A13 +HWI-EAS91_1_30788AAXX:1:2:1576:1152 83 chr1 96562410 60 36M = 96562070 -376 CTCCAACTCTCAATTTCCTCATCTTGCCTGTAGCTC I6IIIIIII<IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1576:1152 163 chr1 96562070 60 36M = 96562410 376 GAATTTACCATTTAAATGTGGAGCTTGTAGGCTATA IIIIIIIIIIIIIIIEI-IIIIIIIIEI:<';IIIH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:834:631 83 chr4 86840641 60 36M = 86840285 -392 GCTGCCTGACTCCAGGTCCAGGATCCTTTCTGCTAC II*IIIFIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:834:631 163 chr4 86840285 60 36M = 86840641 392 ATGATGATAGCACAGAGCCCCAAGCACCATAGAAGA IIIIIIIIIII9III1IIIII/.IIEII?3II05I2 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1174:1342 99 chr13 26637126 60 36M = 26637411 321 GAAGTTCCAGGCTGCTACCATGTGCAAATTCACCAG IIIIIIIIIIIIIIIIIIIGIIIIIIGFIIIIII9I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1174:1342 147 chr13 26637411 60 36M = 26637126 -321 CTGCTGTTTCAAACCTTTATCTTTTCTCTTCTTCTT I6IFII9EIIIIIIIIIIIIIII?IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1220:1220 83 chrM 3645 60 36M = 3288 -393 ACTTCCTACCACTCACACTAGCCCTCTGCATATGAC I7D6IHDIIIII<IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1220:1220 163 chrM 3288 60 36M = 3645 393 GATTAATCTTCCCATCATGACCCTTAGCCATAATGT IIIIIIIIIIIIIHIIBII=IIIII5CII?I-2I;I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1522:876 99 chr17 48464934 60 36M = 48465263 365 GATCTAATTCTCATTCCTTATATCTTATTTGTGAGA IIIIIIIIIIIIIIIIIIIIIIIIIIEIIIIIEI;G XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1522:876 147 chr17 48465263 60 36M = 48464934 -365 CTCACCGACATCAACAGCCCCTTGCCAGTGATCTTG I#3'I0274;0=I2IIFIIIIFHIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:842:897 99 chr2 43072300 60 36M = 43072680 416 GCTGGCAATCTCAATGGGGCCATAAAACATTTACTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIAII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:33T2 +HWI-EAS91_1_30788AAXX:1:2:842:897 147 chr2 43072680 60 36M = 43072300 -416 ACTCTTTTGTTTTGCTAGGAGCCCAGAGGAAATAAA 73A@67IIIIBI1IIIIIHII?IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1313:452 99 chr19 40447606 60 36M = 40448042 472 GGTTCTGTGGATGGATGAGCAAATTTTATCCTCCTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII6 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1313:452 147 chr19 40448042 60 36M = 40447606 -472 TTTATGGCGTGGATCACCTCAGCCACTCTTGCTTCC ?;+'&I5.2*7/34I$II'IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1638:1475 83 chr18 23020312 60 36M = 23019926 -422 TTACCTTAAATCAATTTGATTAAAATATTTGTTCTC II=IBIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10G23C1 +HWI-EAS91_1_30788AAXX:1:2:1638:1475 163 chr18 23019926 60 36M = 23020312 422 CTTCCAATAACCTATTTGGGTTCTTTTTGCCCAGCA IIIIIIIIIIIII<IHI-II=IIIIIII8ABI5@I2 XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:642:173 99 chr29 5943208 60 36M = 5943550 378 GTTCAATACTTTATTTTTGCCATATAAAAGACCAGT IIIIIIIIIIIIIIIIIIIIIIIIIICI?7IIIHDI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:642:173 147 chr29 5943550 60 36M = 5943208 -378 AGGCTTGTTGAAATCTAAATAGACACCATTCATGAG IDII>=FI8IIIIIIIIII8IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1653:121 83 chr13 31945064 60 36M = 31944711 -389 GCCATACAACTCACCTAAGAGAGTGGCAGTGGTGTC IIIIEIIIII7I>II?IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1653:121 163 chr13 31944711 60 36M = 31945064 389 TCAAGACTTGAGAAATTCTTAAAGCCAAATGGTAGG IIIIIIIIIIIIBIIIIIIIIIDIIIIIHIII-III XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1411:1408 99 chr2 57937465 60 36M = 57937806 377 GGGAAGTTGATGCTGTCCTGCCTCCCCACTTTTGGA IIIIIIIIIIIIIIIIIIIIIIIIIII4IIIIII;8 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1411:1408 147 chr2 57937806 60 36M = 57937465 -377 TAAGGGTAATTAGAGAGTAGAAGAAGTGCTCTGTAA )IIIIIAI?:IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1747:1814 99 chr25 19852920 60 36M = 19853251 367 GCGGGGAGCGTTCGGCGTGCCAAAATCTCCCTCACT IIIIIIIIIIIIIIIIIIIIIIFF?IIIIIIIIAII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1747:1814 147 chr25 19853251 60 36M = 19852920 -367 TATCCTTCATTTAGAATGGAGATATGTGTAAACTTT FI8E?EG6I<EIIIII;IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1087:772 99 chr4 62794915 60 36M = 62795268 389 GGATGAATCCAGTTAAGGCGGAGAGATAGAAAACAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIGI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1087:772 147 chr4 62795268 60 36M = 62794915 -389 AACTGCTGACAGTTCTTCCATCTGGAGAAACAACCT III0<49I>IIIGGIBII+ICI@IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:970:578 99 chr11 15947479 60 36M = 15947793 350 GTCATTCACTGTTAGTCACTGCAGGAAAACTTGGTA IIIIIIIIIIIIIIIIIIIIIIHIIIIIIIIII:II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:970:578 147 chr11 15947793 60 36M = 15947479 -350 AGAGGGTTAATTCTACCTCCATTCTCGTTTGCAGGC ,;6IIGIIIIIIIC*IIIIIIIIIDIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:974:32 99 chr29 15739852 60 36M = 15740211 395 GGATAGGTGCTCAAAAACTTTTATTTGCTTATTGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIBI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:974:32 147 chr29 15740211 60 36M = 15739852 -395 GAGTGATCAACATAGTTTCCATACCATCCAGAAGAC %ID;&I:'IIII8IGII6@IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1109:887 99 chr7 41007644 60 36M = 41008001 393 GATGGATTATGCTAATGTGGGCCGACTTTTCTGCTT IIIIIIIIIIIIIIIIIIIIIIIIHIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1109:887 147 chr7 41008001 60 36M = 41007644 -393 TCCTTTTCTTCATAGCAATAGGCAGTCTAAAGCAAA /4I7=>B@I>II4IIIIIAIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1064:1692 99 chr7 38028941 60 36M = 38029241 336 GGAAAAAGGCAAGTAGAAAAACTGGCAGTTCATAGA IIIIIIIIIIIIIIIIIIIIIIIIIIII'IB,I,6@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1064:1692 147 chr7 38029241 60 36M = 38028941 -336 CTCAGTGCTTCCAGCTCTGTGTTTGTGCCTTGAGAA II0EBIIICIIIIIIIIIIIII7>IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1303:644 83 chr25 16421488 60 36M = 16421138 -386 CAGCCACTAGTATTATGTTGTCTGGACCAGTTTAGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1303:644 163 chr25 16421138 60 36M = 16421488 386 CCTTAAGTGGCTACCATATTGGACAGTACAGAGTTG IIIIIIIIIIIII?I-I;II-II=1506.*,@;/@* XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1393:882 99 chr5 96665666 60 36M = 96666054 424 GGAATACAAAGATTGTACAAAAAAGGAAAAACAAAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1393:882 147 chr5 96666054 60 36M = 96665666 -424 TGTTGTAAAACTAGGACTGTTGATAGTAATAGGGAT 7IIIAIIIIIHGIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1587:587 83 chr5 91363358 60 36M = 91363042 -352 TTTGATGGCTCCATCTTTACTATACCTGATGACTAC IIGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1587:587 163 chr5 91363042 60 36M = 91363358 352 CTATAACTGAGAAGCCATGGGGACTTAAATTTTTGA IIIIIIIIIIIIII:IIIIIII4=II<;IIIIII0- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:881:447 99 chr26 31931907 60 36M = 31932254 383 GAGTATTTGTGGATGTTTTTAAGAGAGACTTGCTAC IIIIIIIIIIIIIIIIIII'IIIIICIFEII&3I)( XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:19G16 +HWI-EAS91_1_30788AAXX:1:2:881:447 147 chr26 31932254 60 36M = 31931907 -383 TTCCCAGCTGGTCCATGAATGAGCACACACCTCAGG ?3GIIIII0II7IIIIIIIDIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1291:1095 99 chr11 13569749 37 1S13M1D22M = 13570208 495 GCCTTGTAGGAAATGGTTGGGGTCGGAAGTGGGCTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII8II XT:A:M NM:i:3 SM:i:37 AM:i:37 XM:i:2 XO:i:1 XG:i:1 MD:Z:13^G12G5C3 +HWI-EAS91_1_30788AAXX:1:2:1291:1095 147 chr11 13570208 37 36M = 13569749 -495 TATGTTCAGTTTGTGAAGTCTGACATTGAGAAGACA G<)<FA17?-4FI8I<II/IIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:20G15 +HWI-EAS91_1_30788AAXX:1:2:802:381 99 chr2 73194907 60 36M = 73195225 354 GATATGTGTTTAAGATATGAATATCATTCTGGGCCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:802:381 147 chr2 73195225 60 36M = 73194907 -354 TGATACAGATGTATCTATATGTGTATATATTCACAT ADB9?>IAIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:857:654 99 chr2 116162696 60 36M = 116163071 411 GTCTCTCTTGTGTTGGTGAACATAGTCGGCAATGCA IIIIIIIIIIIIIII+IIIIIIIIIIIIII@II&IH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:857:654 147 chr2 116163071 60 36M = 116162696 -411 TTAATCAACAGATGAATCAAGTCAGAAGAATATAAT >DII7)IIHIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1575:907 99 chrM 6329 60 36M = 6677 384 GACTAGCCACCCTGCACGGAGGAAATATCAAATGAT IIIIIIIIIIIIIIIIIIIIIIII@IIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1575:907 147 chrM 6677 60 36M = 6329 -384 GCTATTCTGATTATCCAGACGCATATACAACATGAA 31FI85HEIG?HI;IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1628:849 83 chr22 28809267 60 36M = 28808899 -404 TCGGTGGTGAGAACATTTAAGATAGACCCTCTTAGC BIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1628:849 163 chr22 28808899 60 36M = 28809267 404 TCACATTTCCAGCAGTTCTTGCTTACATTTTTGCTG IIIIIIIIIIIIIAIIIIIIIIII<I3IIIII/II, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1380:710 99 chr4 96849101 60 36M = 96849436 370 GAAGCCAGTGAAGAGAAAGCTGATGGAAGAGCAGAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIHI XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:11G24 +HWI-EAS91_1_30788AAXX:1:2:1380:710 147 chr4 96849436 60 31M1I4M = 96849101 -370 AATGTGCAAGCAATAGGTTTAAAGCTATCTTAATTC IIFI,I9IFCIIIIIIIIIDIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:31T3 +HWI-EAS91_1_30788AAXX:1:2:936:40 99 chrX 97162256 60 36M = 97162556 336 GATAAGGCAATAAGAGAGGAAAAGAAACCAAAGATA IIIIIIIIIIIIIIIIIII9IIIIIIIIIF2=I7I6 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:936:40 147 chrX 97162556 60 36M = 97162256 -336 AATTTTCCACTTACCTTAATCATAAGGCATGGTACT IIIIIIII9I7=DII7IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1171:1540 83 chr29 19562868 60 36M = 19562529 -375 TCTGACACTGTTCCTATGGATGGGAAAGGTGAGTGC CIAIIIIIIIIFIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1171:1540 163 chr29 19562529 60 36M = 19562868 375 GTTAAGACAAGGATTAGAAAAGAAGAAATTTACTTG IIIIIIIIIIII?IIII?IDGIIFI=?GIIIIIIIC XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:547:661 99 chr3 102791916 60 36M = 102792219 339 GTATTTTGCAACACAACAGGACAAACTCCCAAACGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIII3IIIGB XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:547:661 147 chr3 102792219 60 36M = 102791916 -339 AGGATCCCAACATCAATGTGATCTCTGCCTTGCCTG @??E<-99IBII7III>I=IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:685:695 99 chr4 47670811 60 36M = 47671149 374 GTTAGGTCACTTGCAGTGTTTTGTTATTGCAAAAAT IIIIIIIIIIIIIIIIIIIIIIIIIIII=IIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:685:695 147 chr4 47671149 60 36M = 47670811 -374 GCCTTTCAATATTTTAGGACACTATTTACCCCATAT :7G5I6<IIHIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1696:1315 99 chr8 84751913 60 36M = 84752293 416 GGAACTTACATGAACTTGATAAAGGACATGGGATGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII?III XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1696:1315 147 chr8 84752293 60 36M = 84751913 -416 TGCCAGGCTGTTGACCAAAACGGACGTAAGTCCCCC +4?5?II;4>=EIII7IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1485:821 83 chrM 4818 60 36M = 4479 -375 ACGACTAACCTACTCCACCTCACTGACCATATTCCC IIIII=IIIIIIIAIIGIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:12T23 +HWI-EAS91_1_30788AAXX:1:2:1485:821 163 chrM 4479 60 36M = 4818 375 CTCGTCAATCGCGCATATAGGATGAATAACAGCTGT IIIIIIIIIIIIII1I1I>II5EGI3E4I144/0+% XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1733:1224 99 chr14 77003341 60 36M = 77003670 365 GATTCTTCTGAGTCAATATACAGCAAAGGATTTTCA IIIIIIIIIIIIIIIIIIIIIIIIIIIII&IIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1733:1224 147 chr14 77003670 60 36M = 77003341 -365 TGTGCCTAGTGAAATTTATCAATTTGGGCAGCAATA ICIII<IGIIIIII>IIIDIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:517:1493 99 chrX 85415259 60 36M = 85415586 363 GATTGATTATGGTGCTGAGTATTTGGAATCCGGGCA IIIIIIIIIIIIIIIIIGIIIII&;&FIIII0+%EI XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:23G12 +HWI-EAS91_1_30788AAXX:1:2:517:1493 147 chrX 85415586 60 36M = 85415259 -363 ACATATTTATATGTCTTCTATTTTAAAAAATGTTGA H$IIIIBIIIIIII<IIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1038:889 99 chr23 31811283 60 36M = 31811637 390 GACATTCCTGTTGGCTCTTATGGTAATTGTAGGAAG IIIIIIIIIIIIIIIIIIIIIIIII6II1II;I0IH XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1038:889 147 chr23 31811637 60 36M = 31811283 -390 CTTATATACATATGGTTCTCCTTTACAAATTCTCTT G4:6BI;III;IIIIIFIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1551:1555 99 chr19 8503309 60 36M = 8503693 420 GTGGGGCTGAAGCTGAAAATATTTTAGCAACTAACA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII>II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1551:1555 147 chr19 8503693 60 36M = 8503309 -420 CTGTTCCCATCCTATCCATTGTGAAAAGTCTGGCTT G2+I7@=II?IIII8IIII=IIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:28C7 +HWI-EAS91_1_30788AAXX:1:2:1567:858 83 chr4 54301141 60 36M = 54300799 -378 TTTTTTCTTTCCAAAGGGCCAGTTTACTAGCACGCC I?I7IDIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1567:858 163 chr4 54300799 60 36M = 54301141 378 CAGTGTCTACTGTATCATATGAACAATTTTTCAAAA IIIIIIIIIIIIIIIIIIIII5CD82IIIII>1H1: XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:756:98 99 chr3 110321867 60 36M = 110322131 300 GGCATGGAAATTTTACCTAGTTTAAGACTTAAATGG IIIIIIIIIIIIIIIIIIIIIIIIII=IIIII5III XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:756:98 147 chr3 110322131 60 36M = 110321867 -300 ACGTGATCATGTGTAATGTGTTCCATATTAACACCT EBI5II2II8IIIIIIII9IIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:21G14 +HWI-EAS91_1_30788AAXX:1:2:1672:1877 83 chr24 18069525 60 36M = 18069185 -376 AGGCCTTGACCCACACTCTTGATATGTCTGAGAGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1672:1877 163 chr24 18069185 60 36M = 18069525 376 GTTTATTTTCACACTGGTTTGATTATTCTTTGCTCA IIIIIIIIIIIIIIIIIIIII;IIIIIGIII,II=. XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:757:886 83 chr14 83781200 60 36M = 83780845 -391 TCCTGGAATTCAGACCTAGATCTACTAACAATTTCC I/IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:757:886 163 chr14 83780845 60 36M = 83781200 391 TAAGGGTCAATGGAGTGCTCAACATATGCAGCTAAG IIIIIIIIIIIIIIIIIIIIIII1IGICIICB@4,@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1272:658 99 chr28 9855387 60 36M = 9855722 371 GAAAAATGGGCCGGCTGAGCGAGCAAAGGGCTGAAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII:<I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1272:658 147 chr28 9855722 60 36M = 9855387 -371 AGATAAGGAAACTGAGGTTTATAGATGTGGAATAAT III;IIIIIII7<IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:915:1733 83 chr7 88339997 60 36M = 88339620 -413 ACCCGGACCACCGCAGCATCTTCCCAACTAGTTTCC 1IIIIAIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:915:1733 163 chr7 88339620 60 36M = 88339997 413 GTTGGGGCAAAGGATTTTGGTTTCTTCTTGTAAGCC IIIIIIIIIIIII8IIIIIIIIIGIIDII4IH00@1 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1386:1447 99 chr6 13910088 60 36M = 13910434 382 GACATAAGATAGATGAATAATGAAGCTTAGCAGATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIICIAII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1386:1447 147 chr6 13910434 60 36M = 13910088 -382 TCTGGAAACATCTTTCCTATAATTTCTTGATTATAG D82DEIIEIIIICIGIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1181:288 99 chr4 52819133 60 36M = 52819453 356 GGTGAGACTGTTCTGGTAAGCATGGAAATTATATTT IIIIIIIIIIIIIIIIIIIIIIIIIHIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1181:288 147 chr4 52819453 60 36M = 52819133 -356 GAAGACAATCAGGCAGAGAGAGCAAATTCTCTCTGA AIIII,II1GIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1329:349 99 chr5 22098876 60 36M = 22099202 362 GTCTCAGAAGCAGCCACGAAAGTTGTTGTCTACCCT IIIIIIIIIIIIIIIIIIIGIIIIIIIIIIIIIII? XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1329:349 147 chr5 22099202 60 36M = 22098876 -362 TAGGGATATTTGTGTCTGGTTAAAAAAAAAAGAGTC +I?IIIII/6IIII8?IFIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:613:1231 99 chr22 24318862 60 36M = 24319164 338 GAGGTAGCTGGGACAGATCATATAAGGCCTTGGACA IIIIIIIIIIIIIIIIIIIIIIII>)<IIII:;IIA XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:613:1231 147 chr22 24319164 60 36M = 24318862 -338 AATAAAACACATGTTCAGGAAAATTCATAGCAATTC I'DIIII*I2IIIFI4IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:1C34 +HWI-EAS91_1_30788AAXX:1:2:1768:603 99 chr2 14142826 60 36M = 14143134 344 GCTCACATGTTTGTTATCTGTTGTCTCCTACCTTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:3T32 +HWI-EAS91_1_30788AAXX:1:2:1768:603 147 chr2 14143134 60 36M = 14142826 -344 TCACTGGCACAGAGAGGGAAACTGAAGCCACAGGGT I9@>'IIGF?EIIIIIIIIIII.IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1125:594 83 chr25 19401374 60 36M = 19401024 -386 GTGCTACGGTTATTTTCCTTTGGAAGCTTTGGAAGC IIIIIGIIIIIIIIF9IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1125:594 163 chr25 19401024 60 36M = 19401374 386 TTGTGCTCTTGTCATCACGGATTCCCGTTCTCTGTT IIIIIIIIIIIII8II@IIIGIIIIIIIIADII?II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1344:59 99 chr22 35581518 60 36M = 35581882 400 GTGTGGAAATGCAGAATCTCAGAATCACCCTGGACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1344:59 147 chr22 35581882 60 36M = 35581518 -400 GAACTGGCAGGGAGAAGGATTATGACAGTACGTAGA IIID.II36IIIEIIIIIIIIIEI<IIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1743:1274 83 chr17 49657748 60 36M = 49657391 -393 CACAGATAACATTGTACCCGGTGTCCCAAGTCACAC IIAIIIAIIIII<IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1743:1274 163 chr17 49657391 60 36M = 49657748 393 AAGTGCAAGGTTATATGCATTTAGTACATTTTCTCA IIIIIIIIIIIIIIIIII=IIIIII;I7IIIIII<9 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:679:1764 99 chr16 29370791 60 36M = 29371091 336 GAATAATCAGTCCATCTCTTCCTCATTCATTTTAAA IIIIIIIIIIIIIIIIIIIIIIIIAIGIIIIIII2< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:679:1764 147 chr16 29371091 60 36M = 29370791 -336 TTATGTATTGCTTTTCGTTATCTATTATTTCCACCA GI6ID1IICEI?7III8III>IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1280:1230 99 chr2 45343738 60 36M = 45344094 392 GCGATGAGCTGAAATTGGTTATTGGTTATTGATTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIII'.IIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:2A33 +HWI-EAS91_1_30788AAXX:1:2:1280:1230 147 chr2 45344094 60 36M = 45343738 -392 CCCCAACTTGTTTGTACAAATCTGCACCTTCTCATG 2/.IIIH;IIHIIG9IIIII4IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1182:845 83 chrX 52845727 60 36M = 52845385 -378 GTTGAGGAGGATAGTAGGCAGGACTTAAGCTGAACC I3=IIIIIII7IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1182:845 163 chrX 52845385 60 36M = 52845727 378 CAGGGTAACTTCTCAGCTCAGCCACTGTGGCCTTGA IIIIIIIIIIIIIIIIIII?III5I?I9IIII9A;? XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1011:1468 83 chr3 21100459 60 36M = 21100119 -376 GAGTTGCTGAACTGTCCACCAAAAGCTTTTTCAAAC IIIIIIIGIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1011:1468 163 chr3 21100119 60 36M = 21100459 376 AACAGTCTCATTTTCTGCTCCCAGTGCACACTTGTT IIIIIIIIIIIIIIIIIIIIII?IICE1E9IGEC:I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1498:369 99 chr7 34226931 60 36M = 34227262 367 GGAGGGGAGGGATTACTAGGAAAACGCACTCTGCCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII8 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1498:369 147 chr7 34227262 60 36M = 34226931 -367 TGGGGAAAGTCAGCATCTTTGTCTTATTCCAGTGCT &5I@III9I&IBIII/I7IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1151:158 83 chr5 98799959 60 36M = 98799642 -353 GCAGAGTTAGAATCTGAGATAGGGTGGTACTTACTC IIIIIIEIIIIIDIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1151:158 163 chr5 98799642 60 36M = 98799959 353 CATGGGCAAGCCAGCACCGGCTCACAGGTTCACTCC IIIIIIIIIIIIIIIEIIIIIII+I2II:BI0I4II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:671:531 99 chr21 33825320 60 36M = 33825661 377 GTAGTTTAAGAACATGCTTAACACGATTCATATTTT IIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIBIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:671:531 147 chr21 33825661 60 36M = 33825320 -377 TGCACATTTAAATTTTTATTTTTATTGGAAATTTGA @I=:8IIIIIIICIIIIIIA@IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:627:1022 99 chr7 94024834 37 35M1S = 94025106 308 GTAGAGATGGGAAACAGGCAGTGGGTTTTCACATAT IIIIIIIIIIIIIIIIIIIHII0II1$III&I=I7) XT:A:M NM:i:2 SM:i:37 AM:i:37 XM:i:2 XO:i:0 XG:i:0 MD:Z:26G3C4 +HWI-EAS91_1_30788AAXX:1:2:627:1022 147 chr7 94025106 37 36M = 94024834 -308 AGAGTCACATTTGGTTTAAATGAAAGAAAGAGCTTT II/I-I'2D@IIIIIIII1IGIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:18C17 +HWI-EAS91_1_30788AAXX:1:2:1396:1893 99 chr21 13322203 60 36M = 13322511 344 GTCTTGATTGTTGGATCGGGAGGCAGAGGCCATATA IIIIIIIIIIIIIIIIIIIIIIIIII?IIII@I;ID XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1396:1893 147 chr21 13322511 60 36M = 13322203 -344 AAGAACCATTGTGGACAGAGATGGGGAGAAATAGCC IIII4-III4I1IIDIIIIII8IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:614:163 99 chr8 45341890 60 36M = 45342167 313 GACGCAACAAGATATGATGAGGTTGACGTTAGACAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:614:163 147 chr8 45342167 60 36M = 45341890 -313 ATTCCAAGTAGATTTTTAAATGAGAAGGAAAATGCA I;DH:III?IIII?II?IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1716:457 99 chrX 86974877 60 36M = 86975223 382 GCTGTGTATTGTGAGAGCCTCTGTATGGAGGAGAGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIHII;I;II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1716:457 147 chrX 86975223 60 36M = 86974877 -382 CTCTTGGGCCTCATCCCATATCTACAGAATGAGAAT >+;+.II;@I4FIFIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:625:831 99 chr15 58434315 60 36M = 58434653 374 GTAGAGAACCAAGAGATGGCTTTTGGAGAGGCCATC IIIIIIIIIIIIIIIIIIIIII+C'&II5DI=I&A) XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:22G13 +HWI-EAS91_1_30788AAXX:1:2:625:831 147 chr15 58434653 60 36M = 58434315 -374 AGATGAAAAACATAATAATAGCTAACATTCAGCGAA III4III%II%IIIIIII:IIIIII;II@IIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:7C1G26 +HWI-EAS91_1_30788AAXX:1:2:996:641 83 chr9 66450187 60 36M = 66449847 -376 GCGCATTTACACAGTTCTGACCAGGGCACAACGATC I@III?IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:2A33 +HWI-EAS91_1_30788AAXX:1:2:996:641 163 chr9 66449847 60 36M = 66450187 376 ACCAAAATTAACAAGAGAAGAATGACTAAACATTGG IIIIIIIIIIIIIIICIIBIIDIIIIIIIDIADII8 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:937:1712 83 chr1 175096252 60 36M = 175095881 -407 AGTTATATACTTAAGACTTGTGCACATTTCTGTACC IIIIIIIIII;IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:937:1712 163 chr1 175095881 60 36M = 175096252 407 TCTGCAAATAACCCGAACGTCCCTCAACAGTAGAAT IIIIIIIIIIIIIIIF4IHDIII9I-1G6B7<I34I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1417:1368 99 chr26 35345110 60 36M = 35345459 385 GTTTTCCTATTAATAAGAACCATGTTTTCACCTTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1417:1368 147 chr26 35345459 60 36M = 35345110 -385 ACACACCACATGAGTCCATTGATATGAAGTTCTGCA C>D5)B4GIIGI9I7III<?8IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1057:385 99 chr21 34924906 60 36M = 34925247 377 GGTGTCATATTGTCTTTAAAATAACTCCCTTTTCCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1057:385 147 chr21 34925247 60 36M = 34924906 -377 GTGCTCAGCACAAATCCTCAGCATTCAGTTTCTGTT I:HBI@III?IIIIIIIIGIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1417:1017 99 chr8 91109956 60 36M = 91110326 406 GTTTGAAAACTTAATGCAAGAAAAAGAATTGTGAAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII?I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1417:1017 147 chr8 91110326 60 36M = 91109956 -406 CACCGTGCTGTGCGGACAGAGGGTCCCAGTGAGAGC I+HII4II7I.IIIIIIIIIIII?IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:956:1978 99 chr2 19840615 60 36M = 19840942 363 GGGAAAAATTTTGATTCCAGTGTCTTGGAGCCTTTT IIIIIIIIIIIIIIIIIIIIIIIIII-IIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:956:1978 147 chr2 19840942 60 36M = 19840615 -363 ATTTTTGTCAAATATCAGGAAGGACAAAGAAACAGT III@IIII<III;I>?IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1476:130 99 chr4 47283762 60 36M = 47284140 414 GTGGACTGAATTGCGTATACTCAATTCCTATGTTGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1476:130 147 chr4 47284140 60 36M = 47283762 -414 CCCACTCTGACTAATACAGAAGGATTGTATGGAAAC G+>BA67*IDIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1456:1961 83 chr3 16383313 60 36M = 16383052 -297 GGTCCCAGAAGACCTGGGAGGTTGGTTATGCACGTC II@IIIIIIIIDIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1456:1961 163 chr3 16383052 60 36M = 16383313 297 AGCTAAACATTAAGGGACTTCAATGGGGAACAGACA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1557:1261 83 chr15 52394665 60 36M = 52394349 -352 CAGGTGGGTTGAAGATGGAGCCACAAACAAGGGGGC %FII'III.%IIIII=IIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1557:1261 163 chr15 52394349 60 36M = 52394665 352 ACAAAAATTGGGGAAGACTTCAGTTAAATCCCAGCC IIIIIIIIIIIIIIIIIIIIG(a)IDI==.F<II26:< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1437:1559 83 chr20 36951791 60 36M = 36951467 -360 ATAATTGAAGACATTTTTAAATAACACTTTTTTTTC IIIIGIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1437:1559 163 chr20 36951467 60 36M = 36951791 360 ATGCAATTGTTATCCAGGAATGGATTCACATTCAGC IIIIIIIIIIIIIIICIHIIIIIIIII9DII?D11C XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1294:687 83 chr14 32627554 60 36M = 32627218 -372 TGCAGTTAGAATGCATCTGATGGAAGCACTCTGCTC IIIIIIIIIIIIIIIBIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1294:687 163 chr14 32627218 60 36M = 32627554 372 ACTCATCTCTGCTATCATAGGGCAAAAAGAGCCACA IIIIIIIIIIIIIIIIIIIIIII=@6@:ICIIIDI- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1443:1181 83 chr11 53222400 60 36M = 53222099 -337 GTGAGGAAGATGACTTTTGTGATCTCAGATTCTTTC IIIIIIIIIIII>IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1443:1181 163 chr11 53222099 60 36M = 53222400 337 TCTGCCTTCTCTCTGTGGATTTGCCTATTCTGAATA IIIIIIIIIIIIIIIII<DIIIIIII+=IDII75I4 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:836:1643 99 chr6 68585405 60 36M = 68585755 386 GATGGAGCCTTTAGGTTATCCAATGGTCGTTTGAAA IIIIIIIIIIIIIIIIIIIII8IIIIIIIIIIII?I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:836:1643 147 chr6 68585755 60 36M = 68585405 -386 TGTCCACTTGCCTTGTCTCAACTGCCTTGTGCCCAG )86II:II:IIIIIIIII>IIIIIIIFIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:612:1350 99 chr9 22056955 60 36M = 22057339 420 GAGAGGTGAAGGATAAGGCAGGTCCATTCGGCTCAC IIIIIIIIIIIIIIIIIIIIII6II)II=IHI+I+F XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:612:1350 147 chr9 22057339 60 36M = 22056955 -420 AATTAGAATAATGGAAATAATAGGTAAAGACTAGGC III)IBIIIIIII<IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1336:1130 99 chr15 88251125 60 36M = 88251496 407 GTCTCAAACAAGTTTTCTGGCATCACTTCAATGTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIII@3IIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1336:1130 147 chr15 88251496 60 36M = 88251125 -407 TAAACCTAAAACATGAGTCACTGTTTTATCTAAAGC 6II=I;IIII;:I@IIIII;IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:803:662 99 chr3 53226486 60 36M = 53226876 426 GTTATATTTCATAAACCAATGTTCTACTTCAACATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:803:662 147 chr3 53226876 60 36M = 53226486 -426 TGAAAAAAGGAAGAACCAGCATTGTCTAGTGATGTG 1AIIIIIIIIIIII=IIIIIII>IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:900:39 99 chr23 38909139 60 36M = 38909473 370 GTTGGTGGTAATTTCTGAGCACAGACCACGGGCATT IIIIIIIIIIIIIIIIIIIIIIIIIIIAIIIII.II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:900:39 147 chr23 38909473 60 36M = 38909139 -370 GACATACAGCAAGATTAACTGTCAGAGCACGCCTTT II9I?IGIIIIIFI5:IIIII?IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1327:1856 99 chr25 11948918 60 36M = 11949245 363 GATGTGGAATAGGCAGTCTGCATACACTTGGTTTAA IIIIIIIIIIIIIIIIIIIIG3III?III@IIII8G XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1327:1856 147 chr25 11949245 60 36M = 11948918 -363 AGGTTGCAAACAAGCCAGGCTGATTAGTCAGGGAGA ICGI9>-III2IIIIIIIII=II9IIIDIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:794:1092 83 chr6 31289289 25 36M = 31288911 -414 GAGGAAGAAACTGAGCTCTAGAATGGTAGCTAGCCC %1*+II&IIII;IIII&IDIIIIII;IIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16C16A2 +HWI-EAS91_1_30788AAXX:1:2:794:1092 163 chr6 31288911 25 36M = 31289289 414 ACCTTTCCCTATTACTTGGAACGTGGTGAATATATT I?IIIII.)II*I/-&86@I+I5H%2I6&@I3319I XT:A:M NM:i:3 SM:i:25 AM:i:25 XM:i:3 XO:i:0 XG:i:0 MD:Z:7T7C16A3 +HWI-EAS91_1_30788AAXX:1:2:1036:840 99 chr5 60688061 37 36M = 60688344 319 GACAGCAGCCATATGAGGCTCTCAAAGCCTGAACTG IIIIIIIIIIIIIIIIIIIIIII9IIEIII8.III* XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1036:840 147 chr5 60688344 37 36M = 60688061 -319 AGAGGCATGGAACACCTGGTGCCTTCTATATTCCAA IGEIG.IDIIIIIIIIEIIIIIIIIIIIIIIIIIII XT:A:M NM:i:3 SM:i:37 AM:i:37 XM:i:3 XO:i:0 XG:i:0 MD:Z:3C8T9G13 +HWI-EAS91_1_30788AAXX:1:2:1181:657 83 chr9 332134 60 36M = 331830 -340 TTTGTTGTCAAATGCTTGCTCTACCTCAATCAATAC ID;ICIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:18T17 +HWI-EAS91_1_30788AAXX:1:2:1181:657 163 chr9 331830 60 36M = 332134 340 TCCCCTCTTCCTTTTAGGCTGTAGAATCTCTGAATA IIIIIIIIIIIIIIIAI;IIIE:I75IIIGI201I/ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:990:238 83 chr15 2889926 60 36M = 2889555 -407 AGTGGGGGACAAGGGAGTCTAGGGTGCTACAAAACC II:IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:990:238 163 chr15 2889555 60 36M = 2889926 407 AGTGAGGAGGACAAGCTGACATCTGTTGAAGGAGAA IIIIIIIIIIIIIIIIIIIIIIIIIIII5,IIHIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1247:508 99 chr2 73298833 60 36M = 73299173 376 GATAAACCACTGTGGAGGCATAAATAAGGAGCACAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIHIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1247:508 147 chr2 73299173 60 36M = 73298833 -376 TTGTTTTAAGCTCTCCTGCTACCACATTGCACATTT IE917I8IE<IHI8II8IICIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1100:442 83 chr6 40362001 60 36M = 40361629 -408 CCCAGTAGTGCTGCCTGACCCTCGCAACTGCTAATC IIIHI2CI,II5IIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1100:442 163 chr6 40361629 60 36M = 40362001 408 CCAAGCTACTCTTACCCAAAATTTCTACAGGAAGTC IIIIIIIIIIIII>III/69II4II:EI;I&III3@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1677:1117 99 chrUn 23213983 60 36M = 23214376 429 GCTGGCCCCTGAAAATTGTTTTTGAAAAAGTCGCTA IIIIIIIIIIIIIIIIIIHIIIII@IIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:32A3 +HWI-EAS91_1_30788AAXX:1:2:1677:1117 147 chrUn 23214376 60 36M = 23213983 -429 AATTGAATCAGCTGTCAGGAAAAAATCACACAGGAG III&:I@,IIIIDIIIIIIIIIIIIIIAIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:669:1833 83 chr1 140707298 60 36M = 140706983 -351 TATGCTTCAAGCACAGATGTTTTCACGAGAGAATTC IIIIIDCIIIII$IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:12C23 +HWI-EAS91_1_30788AAXX:1:2:669:1833 163 chr1 140706983 60 36M = 140707298 351 TCCTAACCACCATAAAAACCTCAAGCTAATCTCTGT IIIIIIIIIIIIIDIII+IICIIB@IIIIIIIII$I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1008:1099 83 chr7 72771480 60 36M = 72771153 -363 AGCACAATAACACAATGATCAGATCGGTGCCATTGC II9IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1008:1099 163 chr7 72771153 60 36M = 72771480 363 ATTGCCAGACCTTGTCACCACCCAGAGTTACTCAAT IIIIIIIIIIIIIDII6IIDIII0I-I1I<IFI.-A XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1630:1465 99 chr27 8633581 60 36M = 8633922 377 GGCAGGATTGTTAAATAGAATTTAGCCAGCCAGACA IIIIIIIIIIIIIIIIIIIIIIII=II7I=IE<E0I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1630:1465 147 chr27 8633922 60 36M = 8633581 -377 CAAATTATAATCAGGATCAGAATCCAGTTGTTGATT *'II(;I@+IIEIIIDII'IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1036:587 99 chr8 40262771 60 36M = 40263112 377 GTAAGATGGGATATTATTCGGTAGTACAAAGGAATG IIIIIIIIIIIIIIIIIIIIIIIIFIIIGIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1036:587 147 chr8 40263112 60 36M = 40262771 -377 AATTGTATGGTATAGGAAAGGTAGCTCAATAGAGCT FI50I4IIIIII<IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:843:517 83 chr2 1490548 60 36M = 1490213 -371 AGGTGGCCTATAATAGGCTCTCACTAAGCTATAGAC IIIIIIIIGIGIICIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:843:517 163 chr2 1490213 60 36M = 1490548 371 GTTGAGAGACTATTGTGATGCTTTGATTCGGCAGGT IIIIIIIIIIIIIIIIIIIIIIII,<III7(>/>$> XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:34C1 +HWI-EAS91_1_30788AAXX:1:2:1183:756 83 chr21 38233024 60 36M = 38232729 -331 GGAAGACTGGCAAGAGATAGCTCAGGGACAACCTTC FIIIII;BIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1183:756 163 chr21 38232729 60 36M = 38233024 331 TGTATAAAACTCAATTTTATGAGGGCTGAGAACACT IIIIIIIIIIIIIIIIII<II:@IIIII=IICI6AI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1258:393 83 chr24 10693332 60 36M = 10692981 -387 AATTCAGCCCTAAAGTCTTTGACTGAATCTCCTTTC IICIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1258:393 163 chr24 10692981 60 36M = 10693332 387 TTGATGTTTACTGCCATGTCCCTAACATGCTGAATT IIIIIIIIIIIIIIIAI?IIIIIIII0F>III+.II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:653:1167 83 chr1 144732560 60 36M = 144732184 -412 TTATTACCTTAGTCACAGTTATAAGAATAAAATCTC IIIIIIHDIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:653:1167 163 chr1 144732184 60 36M = 144732560 412 TTCATTTTCTTGTGAAAGGAAAGGGAGGGCAGCACG IIIIIIIIIIIIIIII>.I>IIIIIIIIIIIIG<BI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1348:1561 83 chr12 28339137 60 36M = 28338781 -392 TTCCATCCCTGAATCCCTCCTCCTCTCCGTCCCTTC I4III9IIIHIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1348:1561 163 chr12 28338781 60 36M = 28339137 392 GATGGGACCGGCCTTCTCTTTTGGATGTTCCTCAAA IIIIIIIIIIIIIIIIIIIIIIII>IIII/G2G,0, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1370:917 83 chr1 170256013 60 36M = 170255715 -334 TATTTTTTAAATTTTTTTATTCCCTCAGTGTTGATC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:7A28 +HWI-EAS91_1_30788AAXX:1:2:1370:917 163 chr1 170255715 60 36M = 170256013 334 TCTTGATTAGGCCCAAATCTATGTAGCTGTTTCAGA IIIIIIIIIIIIIIIIAIIIIIII>IIIIIIID23, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1555:535 83 chr7 29103820 60 36M = 29103487 -369 TAAAGGCTCCTTGTCATTCTTTCAAGAAATCTCCTC IIIIBIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1555:535 163 chr7 29103487 60 36M = 29103820 369 CAAGCTGACCGGGTTATAGAAGTAGGAGTGAATACG IIIIIIIIIIIIIBI@IAI=IIIIIIIIHI>?IIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1299:829 83 chr1 94762174 60 36M = 94761824 -386 GCAAATGCCGTTGTATTTTACCTAACACCACTGGGC I:III<IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C30 +HWI-EAS91_1_30788AAXX:1:2:1299:829 163 chr1 94761824 60 36M = 94762174 386 TAAGACTGAGTAGAGATGCAATTTCAACCCAAGTCG IIIIIIIIIIIIIDIIIIIIIIIIIICII924<;IE XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1444:892 99 chr28 26021348 60 36M = 26021697 385 GCTTATTGTAAGGAAATGTGCATGAGAACCTGAGAA IIIIIIIIIIIIIIIIIIIIIIIIIIIEIIII:I9I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1444:892 147 chr28 26021697 60 36M = 26021348 -385 CTCCAAGCTTTTGCTTACTCATGTTTCCATTCCCTC I0IIIIAI7A8IIIHIIIIIICIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:22T13 +HWI-EAS91_1_30788AAXX:1:2:958:1288 83 chr27 2185240 60 36M = 2184882 -394 GAAGGAGGAGGATCTTTACGTGTTGCCTCCCCACCC I9IIIIIIIIII@GDIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:958:1288 163 chr27 2184882 60 36M = 2185240 394 GTGGAGCCCTCAAGAGTGGGAATGGTGCCCTCATAA IIIIIIIIIII3II=I:<II81II84'@II1E+D*I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1521:1399 83 chrM 4351 60 36M = 3975 -412 ATATCAATCCTATATCAAATCTCACCCTCAATTAAC IIIEIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1521:1399 163 chrM 3975 60 36M = 4351 412 TCTTCTAGGAACTATAATCGTTATAATAAGCTCACA IIIIIIIIIIIIIBI=DIIIDI;I9EI>?1IFE4D+ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1345:1242 99 chr8 93625741 60 36M = 93626103 398 GAGGGTGTTACTGTATCTGAAGGACGAAGCTGAGTG IIIIIIIIIIIIIIIIIIIIIIII1IIIIIII9III XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1345:1242 147 chr8 93626103 60 36M = 93625741 -398 TCCAGTTGTCTTCACCAGGCCACGTCTTGGATTCTG -'*2A9'+09=*I)II&IEFIIIIIII6IIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1612:1818 83 chr2 24756597 60 36M = 24756284 -349 ATGGTAAATGAGAGTTATACAAACAAGAGAGTGCTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1612:1818 163 chr2 24756284 60 36M = 24756597 349 GCGAGGGCGAGGAGATGCCTTTCATTCTTTTATTCG IIIIIIIIIIIIIIIIIIIIIII6IIIIIII5II<I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1693:791 99 chr7 79821880 60 36M = 79822188 344 GGCAAGAGCCTTGAATGTCCCCCTAGGTCAGATGGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII3IIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:18G17 +HWI-EAS91_1_30788AAXX:1:2:1693:791 147 chr7 79822188 60 36M = 79821880 -344 TTCACTTTTTGAAGAGAGAAGTATCAAAGGATTTGT :2I7I<I566IIIIIIIIIIIIIFIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1408:1674 99 chr7 83027061 37 36M = 83027392 363 GTTTTAAGCACATAAGCCAGAACGACAGGCCCTAAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII6I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1408:1674 147 chr7 83027392 37 4S32M = 83027061 -363 GAAAAGAGGTGGGCTGCCATAAAGCCACAGTAGCCA '&9#12%?/.)I'H.II.IEIIIIIIIIIIIIIIII XT:A:M NM:i:1 SM:i:37 AM:i:37 XM:i:1 XO:i:0 XG:i:0 MD:Z:6T25 +HWI-EAS91_1_30788AAXX:1:2:927:240 99 chr8 48667031 60 36M = 48667381 386 GTTTGCTAATACATCCTTTATTGGCTGCCTTCCTTT IIIIIIIIIIIIIIIIIIIIIII@III#I0I@I%II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:927:240 147 chr8 48667381 60 36M = 48667031 -386 AGTACTGAAGGAAGCTTCAGGTCACCCAACTATCAT II6DI-IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1724:1857 99 chr4 10950719 60 36M = 10951079 396 GTGGCGATTGCGTAGAAGTGGTTCACTGATTACTTC IIIIIIIIIIIIIIIIIIIIIIIB;III8II<;II1 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1724:1857 147 chr4 10951079 60 36M = 10950719 -396 AAATAAAGCTATTTGTTGACTGTTTAGGAAGAACAT IIIIIIIHI:II?III@IIIIIHIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1666:134 83 chr15 63379853 60 36M = 63379507 -382 TTATCACTGGTTGGATCCAGCACTGACCTCACCATC IHIDIII9IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1666:134 163 chr15 63379507 60 36M = 63379853 382 TGCTTCCACTGCCTCCCCTGGGTTTGAGTCCTGATT IIIIIIIIIIIIIIIIIIIIIIIIII6IIIIII:IG XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:700:1623 99 chr19 59295487 60 36M = 59295805 354 GTGTGAGTAGGTGCTAGACAAGTATGCATTTACAAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII:.% XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:35G0 +HWI-EAS91_1_30788AAXX:1:2:700:1623 147 chr19 59295805 60 36M = 59295487 -354 TTTTTGTAATCACCATTGGTCTAAATTAACCAATCA @5GE@?:III6I3II<AI)III:IIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:22C13 +HWI-EAS91_1_30788AAXX:1:2:1046:147 83 chrX 105048797 60 36M = 105048518 -315 AAGTGGAAGTACTAGAGGTCCATGTCCTTAAAAAGC IIIIIII$)IIIIII.I&7FIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C18 +HWI-EAS91_1_30788AAXX:1:2:1046:147 163 chrX 105048518 60 36M = 105048797 315 CGTAGGTTCCAACATCCTATAGCACGGGCCCATCTC I&IIIIIIIIII4IIIIIIIIIIIII&4I@I%I+4I XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T24T9 +HWI-EAS91_1_30788AAXX:1:2:1319:675 99 chr5 70314517 60 36M = 70314844 363 GAGTAGAAGTGACAGGGGCTAGCCAACAAGCACTCT IIIIIIIIIIIIIIIIIIIIIIII;FI+III2I?IE XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1319:675 147 chr5 70314844 60 36M = 70314517 -363 CCCAAAGCAGCAGAACCTGTGCGTTAGTTTTGATTG A&+?8I(a)6EIIIII0II.I5IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1380:804 83 chr20 11293877 60 36M = 11293514 -399 GCTGGCCAGTGGCAGAACGGTTACATTTGTGCACTC IG>IIIIII?IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1380:804 163 chr20 11293514 60 36M = 11293877 399 AGGTATAAAGGAGGAATAAAACCCAAATATTTGGAA IIIIIIIIIIIIIIIIIIIGIIII?.I=ICIIIC1: XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1776:820 99 chr8 89942801 60 36M = 89943165 400 GGAGCAGACAGGGTACCACTTCACGGACACAGAGCA IIIIIIIIIIIIIIIIIIIIII<IIEII>I=7IDI- XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1776:820 147 chr8 89943165 60 36M = 89942801 -400 AATTAATTCCTGGACTGAATCAAAGACAGCCTGTGC &A1%I><+I,(H1>*+4II/I%IIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C20C14 +HWI-EAS91_1_30788AAXX:1:2:1264:674 99 chr19 37086246 60 36M = 37086604 394 GATGGCAGAAAAGTGGACAGAGACAGAGATGCAAAC IIIIIIIIIIIIIIIIIIIIIIIIFIAIIIII;FI@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1264:674 147 chr19 37086604 60 36M = 37086246 -394 ATTTTTTCCTCATCTGATACTTTCTCATATTGTCGT I<8B6I2II0II0I5IIDII:IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:606:638 83 chr20 57935589 60 36M = 57935259 -366 ATAAAGAAATATTTCTCTCAAATATTTACTATTCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:15C20 +HWI-EAS91_1_30788AAXX:1:2:606:638 163 chr20 57935259 60 36M = 57935589 366 TAATTCATTTTCTGCACAGTTTCATTCAAAGTGATT IIIIIIIIIIIIIIIII;IIIIIIIIIFIG-II4II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:867:25 99 chr15 33513370 50 36M = 33513706 372 GTTATCTCCCAGGCTCTCAGCACCCCTCCCACCCAA IIIIIIIIIIIIIIIIIIDIIIIIIIIIII3III-' XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C0G34 +HWI-EAS91_1_30788AAXX:1:2:867:25 147 chr15 33513706 50 36M = 33513370 -372 TGGTNGTGTGTCCAAATGANGAAACAATATGGAATA +ID&"I0I9I/),III@II"IIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G14A16 +HWI-EAS91_1_30788AAXX:1:2:1476:71 83 chr4 91313603 60 36M = 91313233 -406 GTCCCTCTGTACTTTTCTTTCCTGTCTGAAACATTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:34C1 +HWI-EAS91_1_30788AAXX:1:2:1476:71 163 chr4 91313233 60 36M = 91313603 406 CCTTATTTCGTCTGTAATTTGTCTTGCAAATTAGGA IIIIIIIIIIIIIIIIIIIII@IIIII/IIFIGICC XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1336:234 99 chr15 41534337 60 36M = 41534672 371 GTTTGTTGCATCCATCTCACTTCTTTGAGTACTTCA IIIIIIIIIIIIIIIIIIIIIIIIIIIAIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1336:234 147 chr15 41534672 60 36M = 41534337 -371 TGAATTGTTCACTGACTACCGCATTATCCCTCTGCC ,/I<II2IAI4I,9HIIIIIIIII=IIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:717:1143 99 chr5 78446612 60 36M = 78446977 401 GGAAGAATGAAGTAGTGGCTTCCAAAATTCATTAGC IIIIIIIIIIIIIIIIIIIII-I)6;7<I-%AI/0/ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:717:1143 147 chr5 78446977 60 36M = 78446612 -401 GGCAAGTCCCCTACCCTGCCTCAGTTTCCTCATCTG I5:I>>HI&II>$IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:8A27 +HWI-EAS91_1_30788AAXX:1:2:1328:472 99 chr9 3434377 60 36M = 3434727 386 GCTTGGCGGGGGCAGGCCTGGGCTTGGGAACAGCCA IIIIIIIIIIIIIIIIIIIIIIIIIIII2II<IFI2 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1328:472 147 chr9 3434727 60 36M = 3434377 -386 GTGGGGAGTCTTGACATGTATTATCAGGAATCCACA I&:III8<+=:3C<-A5IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1428:1148 83 chr2 100737078 60 36M = 100736710 -404 TCTCTTCATTTCAGGTGAAGGCTATCTGATTTCCCC EIII>8IIBI4IIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1428:1148 163 chr2 100736710 60 36M = 100737078 404 ATATTTATATGGTATGACACACTTGAGCTATATTTG IIIIIIIIIIIIIIIIIIIIGIIIG+@IIEI,III( XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:615:1216 99 chr10 68563652 60 36M = 68563993 377 GTGAGTCCACTTCATCCTTATATTATTCCACATCCC IIIIIIIIIIIIIIIIIIIIIIIII),IIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:25G0G9 +HWI-EAS91_1_30788AAXX:1:2:615:1216 147 chr10 68563993 60 36M = 68563652 -377 GCAAATCTTTTCATATTCCCTAATTCATTGATGAGG C>IIIIFIIIIIIIIIII*IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:978:417 83 chr1 124574504 60 36M = 124574232 -308 ATCCTCCTGATGTCATAACGTGTGGCATCACTGCAC I@II7II:IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:978:417 163 chr1 124574232 60 36M = 124574504 308 CACAGCATTCATAATATTCTGTGAGCTGACTCAAAT IIIIIIIIIIIIIHIIIIIIIIIIIIIIAGII0I7I XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T20 +HWI-EAS91_1_30788AAXX:1:2:1318:1604 99 chr14 44413404 60 36M = 44413658 290 GTGTCCCAACGTTAGTGCAAAATTTGTTCAATGGGC IIIIIIIIIIIIIIIIIIIHGIIIIIIIIIIII6DI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1318:1604 147 chr14 44413658 60 36M = 44413404 -290 GAGGGTCTATGCCTGTCCTACTTACTCCACCTTATG IIIII0IIIAIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1654:470 99 chr13 8486868 60 36M = 8487227 395 GGTATTAGGGCTGAAGGATGATTCCACAGAAACCTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIEHIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1654:470 147 chr13 8487227 60 36M = 8486868 -395 CCATGGTCCCCAGTAGTAACCTCAGCTTGGGCAGCT 0+-3II;I<EB;?IIIIIIII2IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:544:1136 99 chr5 55962312 37 36M = 55962597 321 GGACTTTTTTTTCCTGATTTTTCTCCTTTCTGATAT IIIIIIIIIIIIIIIIIIIIIIIIIII%'II26+CI XT:A:M NM:i:3 SM:i:37 AM:i:37 XM:i:3 XO:i:0 XG:i:0 MD:Z:27G0G4G2 +HWI-EAS91_1_30788AAXX:1:2:544:1136 147 chr5 55962597 37 36M = 55962312 -321 GAGCTTCTTTATTTAAGAGCAACACTGCCCTGTCCT II<8I81I:IIII0IIIIIIIIIIIFIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1469:1168 83 chr20 41018922 60 36M = 41018608 -350 TAAGGTGCAGCCCCTGCCCTCAGGGAACAACCAGCC >III9/IIIIIII9IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1469:1168 163 chr20 41018608 60 36M = 41018922 350 CCCACCAGGGAGGCTGTTACCTGGGGGTCACCACTG IIIIIIIIII+IIIIII72IIIII<CI>4/9@%;7- XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17G18 +HWI-EAS91_1_30788AAXX:1:2:1307:1618 83 chr14 31953348 60 36M = 31953054 -330 CCAAATGACAGGTGGTGGAGTGTTAGGGTGAAGCAC CIIIIIIIIIII@IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1307:1618 163 chr14 31953054 60 36M = 31953348 330 GAATACATAGGGAATTACATCCAGCTCTTCTATCCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIII:III2 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:779:198 99 chr1 116729949 60 36M = 116730274 361 GACAGCACAGATCCAAAATAATTTTAGGACAAGCTA IIIIIIIIIIIIIIIIHIIIIIIIIIIIIIIIIICI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:779:198 147 chr1 116730274 60 36M = 116729949 -361 AGGAAAACCAAAAGCAGATGAAAACTATTGGTTTAA II8IIII5IIIIIIIIAIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:741:1526 99 chr3 67613931 60 36M = 67614249 354 GTGGTGAGAGGAATTAACATGCATGGCATGAATGTG IIIIIIIIIIIIIIIIFIIIIIIIIII:II>?I&I4 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:741:1526 147 chr3 67614249 60 36M = 67613931 -354 CACAACTTGCAGAGTCTTTAGGGAAAAGCAAAAGCT +I7GB(I0I8IIIIBB;I=IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1136:1426 83 chr17 75660251 60 36M = 75659900 -387 CATACCCTCCATGGTGAACATTTTCCTCCTGAAATC CI;EIII6IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1136:1426 163 chr17 75659900 60 36M = 75660251 387 GCCTGTTATCTCACTCTACTGAAGACTAGGCACCAG IIIIIIIIIIII>IIIIFIII/?I;G1<AFIFI=,? XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:1634 83 chr1 81568049 60 36M = 81567794 -291 CCCTTCTATCCATTCCCAGCTCAGGGGGCTGCATTC *D&;IIIIIIIIIAIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:1634 163 chr1 81567794 60 36M = 81568049 291 ATGCCCTACTTCTATGTCTTATTTTAGTTGTATTAA IIIIIIIIIIIIIEIEIIIIIIIIII1I&&-9II>I XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28G1G5 +HWI-EAS91_1_30788AAXX:1:2:971:752 99 chrX 22241233 60 36M = 22241616 419 GAAAGGAAAATGAAGATCTGTGACTTGTGATATAAA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:971:752 147 chrX 22241616 60 36M = 22241233 -419 TATGTGAACAGTTGGGTTGGGTAATTTGTTGTTAGT @I2I3II5III71IIII>IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:795:1130 83 chr8 51886907 60 36M = 51886616 -327 ACAGAGATGTGGAGCACCTGCATGACTGACTTTAGC I>IIIIIII@IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:795:1130 163 chr8 51886616 60 36M = 51886907 327 CAAGACCACCCTTAGGTTTGATGACATTCACTCAGA IIIIIIIIIIIIIBIIIIIIIIIIIIIIIIIII3+I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1672:655 99 chrX 16249942 60 36M = 16250248 342 GAACTTTCTCTGGAGGGAGATGATGATATATCTCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1672:655 147 chrX 16250248 60 36M = 16249942 -342 TGGCCATTTCACAAAGTCTCCAAGCTGCTATGTTAT 4I8IGI=?5IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:28C7 +HWI-EAS91_1_30788AAXX:1:2:1715:695 99 chr25 29605422 60 36M = 29605827 441 GCTGTGCTGTTACATTGGAATGTACTGAGAATGTCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1715:695 147 chr25 29605827 60 36M = 29605422 -441 AGTATTTTCATTTGAGAAAAATTATGAATGAGAAAA I:@III@;IIAIIIIIIIIIIEIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:619:1182 83 chr20 3885588 37 36M = 3885258 -366 GTTGTATATAATAGAAAAAATAAAAAAAACCACCAC *B4*1I=I&II-I-IIIIII4IIIIIIIIIIIIIII XT:A:M NM:i:3 SM:i:37 AM:i:37 XM:i:3 XO:i:0 XG:i:0 MD:Z:10C4C8C11 +HWI-EAS91_1_30788AAXX:1:2:619:1182 163 chr20 3885258 37 36M = 3885588 366 AGTAGAATACCAGGCAGACATAAGAGAGAATGTGGG IIIIIIIIIIIIIIIII9I4I3FI1I=IH?IIA;*I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1471:1002 99 chrUn 17163474 60 36M = 17163827 389 GATCAAATATAAAGCAAAATTGAAATGAAAATGATG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1471:1002 147 chrUn 17163827 60 36M = 17163474 -389 GTCTAGAGCATAGTGACACACGTTGTGCTTTTTCTC @8D'IIIIICI:H2:5I?I9IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1290:516 99 chr13 37833658 60 36M = 37834072 450 GAGAGAGAAATCCAATGAGGGAAAATATTTAACAAC IIIIIIIIIIIIIIIIIIIIIEII<IGIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1290:516 147 chr13 37834072 60 36M = 37833658 -450 CCAAAATGGGATCATGGTGCTGGTCACGCAACTCTG I,I5I@1II8AIIDIIIAI@IIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1461:1091 99 chr25 13242402 60 36M = 13242748 382 GGACAGAGAGATGGATCTGGTTGTTGCAGGGGCTGC IIIIIIIIIIIIII=IIIIIIIIII9IFII%I>II: XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:30T5 +HWI-EAS91_1_30788AAXX:1:2:1461:1091 147 chr25 13242748 60 36M = 13242402 -382 GGTGACTCTTCATTCTTGAAACCCAGAGTCTTTGTA BI0<I4IH7I9II3IIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1134 99 chr20 11693859 60 36M = 11694158 335 GGAGAAATACTGCATGAGGAACCACACTGTCCTTTC IIIIIIIIIIIIIIIIIIIIIII8IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1166:1134 147 chr20 11694158 60 36M = 11693859 -335 TCTTTACCGGGCAAGGTTGGATGGACCAACACCCTA =++,.FI3III<IIII>IIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:798:109 99 chr18 40547545 60 36M = 40547875 366 GTGTGACTATATTAAAAGCCATTAAATCGTACACCT IIIIIIIIIIIIIIIIIIIIIIIIIGIIIIFIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:27T8 +HWI-EAS91_1_30788AAXX:1:2:798:109 147 chr18 40547875 60 36M = 40547545 -366 TCCCCAAACGTTAAAGTTACAATTTTCTGGCCAATA %3=I*IIIC@IIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:31T4 +HWI-EAS91_1_30788AAXX:1:2:934:267 99 chr17 72921789 60 36M = 72922169 416 GATCCAATTTTCTTGGGGGCACTTTCGCATTCAGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIDIII=@IB XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:934:267 147 chr17 72922169 60 36M = 72921789 -416 TAAAATCCAAATTTGTAACTTGGATTACTAAGCAAA III@IA8@IEI:IIIIIIII1IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1020:891 83 chr31 20544775 60 36M = 20544469 -342 ATTTTCATTAGCCAAATTTCATTATTTTTGCCATTC IIIFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1020:891 163 chr31 20544469 60 36M = 20544775 342 TATCATCTCTAAATCTAATTCCTGTTTACATCATTG IIIIIIIIIIIIIIIIIGIIIIICIIIIIHI?5EG% XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1507:1907 83 chr1 40436066 60 36M = 40435686 -416 TTGTGTGAACGTGAGCTGTTTCTTACCTTTCTAAGC =IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1507:1907 163 chr1 40435686 60 36M = 40436066 416 CTTCAACGTTCCTCACTTACCTAATTCCCATGCATT IIIIIIIIIIIIIIIIIIIIIIIIIEIII8D>IIIG XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:640:752 83 chr4 47921547 60 36M = 47921146 -437 TGTGTTTCCTGGCTCTCACCTGTTCCTCACCAATTC IIIIIIHIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:640:752 163 chr4 47921146 60 36M = 47921547 437 ATTTTGCAATGGGCTAGTGGCTTCAGGTCTAGAATT IIIIIIIIIIIIIIIIIIIIHII.(;D:3I#D%3BI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:971:981 83 chr16 55966470 60 36M = 55966172 -334 TGAAATATGGTTTTGTAACCACAGAACAAATATTTC <IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:971:981 163 chr16 55966172 60 36M = 55966470 334 TTTAAAAACATAATAATTTTAAATTTAACAGTTATT IIIIIIIIIIIIIIIIIIIIIIIIIIIFII9II<II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1048:232 83 chr21 19754024 60 36M = 19753694 -366 TTCTTTTGAAGGGAGTTCTGAGTGAGGAAATTTCAC II7II<IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1048:232 163 chr21 19753694 60 36M = 19754024 366 AACTTACATTAGTTTGTCACTCTGTGGGCTACTATC IIIIIIIIIIIIIIIIIIIIIIIIIIII9II7I9II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1671:1210 99 chr6 64578059 60 36M = 64578394 371 GTGTGAACTTAGCCTCTGCGCCACCAGTCTGGTCCC IIIIIIIIIIIIIIIIIIIIIIIIIBIIIIIIEIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:3C21G10 +HWI-EAS91_1_30788AAXX:1:2:1671:1210 147 chr6 64578394 60 36M = 64578059 -371 TTGTCTTTTTTAAAGCAAACAAGTATAAAAAATGTG I:I7BCII<IHIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:729:744 99 chr21 9834666 60 36M = 9835006 376 GATGTATAGATTCACTTCTCTTACCAAATCTAGGAA IIIIIIIIIIIIIIIIIIIIIIIII=IIIIIIIHII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:729:744 147 chr21 9835006 60 36M = 9834666 -376 TTTTTGTTTTTTGTAATTTCTCTCTCTTTGTTGGTA 13=2;G<I?74IIIII8IGI<I8IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1237:1450 83 chr8 71412892 60 36M = 71412501 -427 CCTGTGATTTGGTCCTCTCTACTGTTTCGTCTTAAC I?IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1237:1450 163 chr8 71412501 60 36M = 71412892 427 AGACATGGCACCGCTCGTCAGGCTATCCTGAGGCAG IIIIIIIIIIIIIIII?II.II982<;=8/&CG3-I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1534:980 83 chr10 73039720 60 36M = 73039379 -377 GTTCCCATCAGCATCACCCCAGCAGTGACCTTTCAC =I5IIIIHIIIIIII)IIIIIGIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1534:980 163 chr10 73039379 60 36M = 73039720 377 AGAATTTTCTTCATCCCTCAAAATATATTCATATCT IIIIIIIIIIIIEIIIIIII7IIIDICIIIIIIGII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13G22 +HWI-EAS91_1_30788AAXX:1:2:1130:1573 83 chrX 103689553 60 36M = 103689220 -369 TATGAATTGGGCATGAGCTTCCCTACAAAGCACAAC IIIIIIDDIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1130:1573 163 chrX 103689220 60 36M = 103689553 369 AGACTCCACCATATTTTGAAGGTTTTTTTCTGTATA IIIIIIIIIIIIIIIIIIIFIIIIIIIIIII>III, XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1159:1095 83 chr9 46265823 37 2S34M = 46265502 -355 TCACAATACAAAAAAGCCATTTCCTAAAATCTCTGC 5+IIII$II3.IIII9'IIIIIIIIIIIIIIIIIII XT:A:M NM:i:2 SM:i:37 AM:i:37 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G2C26 +HWI-EAS91_1_30788AAXX:1:2:1159:1095 163 chr9 46265502 37 36M = 46265823 355 TAACATGAACCTTAATGATTAATAATAAGCAGAGTG IIIIIIIIII&II<II;(II8HIIII;293&A+??; XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1318:383 83 chr10 8638091 60 36M = 8637729 -398 ATACCTGCAGAGACAGTCACACACAAACTCAGTTTC I=III9IIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1318:383 163 chr10 8637729 60 36M = 8638091 398 ATCACACACATATACATGGTTGCACAATCACACCCA IIIIIIIIIIIIIIIII?I8I>IIE4A.<II@G9H& XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1031:939 99 chr8 66368416 60 36M = 66368765 385 GAGTATTACACCTGGAAGGGAGCTCAGGCCCCTGCC IIIIIIIIIIIIIII=IIIICIIIIIII<IIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1031:939 147 chr8 66368765 60 36M = 66368416 -385 TCACTCCCGGTACTTAATTTTATTTCACGATCTAAA IB/I/D<IIII3IIIIIIIIFIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1451:948 99 chr5 77535219 60 36M = 77535609 426 GAAATACATGATTTGGATGTTAGCTATTAAAACGTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIB>IIE XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1451:948 147 chr5 77535609 60 36M = 77535219 -426 AACTTCCTACGCTCTGCTTTGCCAGCCCGGGGTTCA *&II+/I5$IEIGI+IIIIDIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1081:432 99 chr4 92234827 60 36M = 92235121 330 GGAAAGGTCACATACTGTATGATTCCATTTATATCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1081:432 147 chr4 92235121 60 36M = 92234827 -330 TGTAACCAATAGGGAAAACTGTGTGATGGGCACACT 'AIIIIE8IIIIIIIIICIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1573:607 99 chr17 55113910 60 36M = 55114226 352 GTTCTGCCTCTATTATTTCACTCTAAGTAAAGAATC IIIIIIIIIIIIIIIIIIIIIIIIIIIII?IIIHII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1573:607 147 chr17 55114226 60 36M = 55113910 -352 GAACAAAAAGTTGTACAGTAGGATTCTTGGCTTGAA IIIBIIIIFI4IIAIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:21C14 +HWI-EAS91_1_30788AAXX:1:2:684:745 83 chr24 32204954 60 36M = 32204597 -393 AAGAAAGTCCTGGGATTCATACTGATCAAAGTCACC IIIIIII2IBGIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:684:745 163 chr24 32204597 60 36M = 32204954 393 GAGGTTTCAACCCTTCAGTTAAAAGCAAAACCTCTG IIIIIIIIIIIIIIIIIIIIF7GIDI1;3>;I=I5. XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:385 83 chr5 94665792 60 36M = 94665464 -364 CATTTTAAAAATTATTTTGCTCAGGAACAATTTTAC .IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:608:385 163 chr5 94665464 60 36M = 94665792 364 AGAGACTTGCGTGCTTATAGACAACACATCTCAAGA IIIIIIIIIIIIIIIIIIIICFIII8F:8?=@1..> XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:824:966 83 chr5 33041415 60 36M = 33041034 -417 CAACTGTGATGGAAATAGTTGGGAAGTGCAGGGATC II@IIIIIIIIIIIIIIIAIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:824:966 163 chr5 33041034 60 36M = 33041415 417 CAATAGTGGCATCCAATCTAGTAAATAGCCTTATTC IIIIIIIIIIIIIIIIIIIGIII>IIIEIIII(DI< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1675:685 99 chr3 107346094 60 36M = 107346437 379 GAGGCCTTTTTCACATTTTACGGAAGCACGGATTGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1675:685 147 chr3 107346437 60 36M = 107346094 -379 AAGACAGAAAGACGTATTTACCAATCCTATTGTATC (I;I2I;IIIIIIIIIAIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0C35 +HWI-EAS91_1_30788AAXX:1:2:599:249 99 chr5 932810 60 36M = 933163 389 GAGAGGTGAAGAGAGCGAGTGAGCACGAGGATGAGG IIIIIIIIIIIIIIIIIIIIIGIIIII5II;II:II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:599:249 147 chr5 933163 60 36M = 932810 -389 CTAGCCATAAAGGCAGCCGAAAAGTGTAGAGAGCTT %6II*%9/IIIIIFIIB(IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1484:611 99 chr15 25586209 60 36M = 25586612 439 GAATGCAGCCTGAGATAGTACCGTGTTGTGGAGATC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIAIBII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1484:611 147 chr15 25586612 60 36M = 25586209 -439 TATTTTCCCTTCATCATTTTGAAAACATCCATTCCT IIIII8IIII7IIE@IFIIDIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:776:516 99 chr16 24283986 60 36M = 24284288 338 GAAAATGAATATGCCTTGGGGCATTTCACATTCTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:776:516 147 chr16 24284288 60 36M = 24283986 -338 ATATAGTAGTATATCACTCACCCAGGGACAATTAAA IDI?IIIICIIBIGIIIAIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1364:176 99 chr3 116853565 60 36M = 116853891 362 GCTTTTTAGAGAGCAAGACAGTAAGTAGCTACATAA IIIIIIIIIIIIIIIIIIIIIIIIIII@IIIIIIIF XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1364:176 147 chr3 116853891 60 36M = 116853565 -362 AGTAAGAGCCATTACGACACAAGGTGCTGACCCAAT (/.IIIIHIIID6IIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:987:1538 83 chr2 24698310 60 36M = 24697962 -384 CTCCCCCAATCAGCCTCTTCAAAACCTACTCCCCAC I1IIIIIIIAIIIIIDIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:987:1538 163 chr2 24697962 60 36M = 24698310 384 AGAACAAAATGGGAGGACGGTACAAATCCAATTAGG IIIIIIIIIIIIIIIIIIII6;@;I3IAII96>44E XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:866:995 83 chr6 82866168 60 36M = 82865833 -371 TCACATGTGGGGCATTGATTTCGGTCTCACCCCCCC DIIII2I8IIIIIIFIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:866:995 163 chr6 82865833 60 36M = 82866168 371 GAAGTTTCCAATCTAGAGATAATGTCAAGGGTCTCA IIIIIIIIIIIIIIIII+IIIII=IIIH.1+BIII9 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1053:355 83 chr22 48606133 60 36M = 48605795 -374 GCAGGCCCCTGAAAAGGTGGTGTCTCTTTCCTGAAC IIIIIIIIICIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1053:355 163 chr22 48605795 60 36M = 48606133 374 ATAAGCAAAACTTCCACGAATTCTTCTACTTGTGTT IIIIIIIIIIIIIIIIII<6IIIIIIICCI@IIG4I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1593:653 99 chr23 4961703 60 36M = 4962001 334 GGCTTTGGTTCTTGGAAGGCAAGAAAAAAATGGGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIEI XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1593:653 147 chr23 4962001 60 36M = 4961703 -334 GCTCTTTTGTGTTCCAGGCATTGTTCCTGGTGCTTT II=IAICEIHII5IIIIIIIIIIIFIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1600:836 83 chr16 72747851 60 36M = 72747482 -405 AAGTGAACTCTACCACACGGGGAAAGGTGTGTGGGC IIIIIE9I9IIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1600:836 163 chr16 72747482 60 36M = 72747851 405 CCTATGTGAGCAATGGCAGTGAGTCTCAATCACCCC IIIIIIIIIIIIIIIIICI>IEII7I5)I?0)7I<* XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:35A0 +HWI-EAS91_1_30788AAXX:1:2:1305:861 99 chr16 50204994 60 36M = 50205377 419 GCTAATGAAGCCACTACACTGGACAACTCTTCAAGA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII?6II XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1305:861 147 chr16 50205377 60 36M = 50204994 -419 CGTTTAGGGTAACACCAGCTACTGTAACAAGTAAGT 233F7I9FE/II9IIGBHEAEI2IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1141:518 83 chr23 33915222 60 36M = 33914822 -436 ATAATTTCTTGCGTCTTAAAGATGATCACACAAATC IIII>I:IIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1141:518 163 chr23 33914822 60 36M = 33915222 436 TTTGATACCTCCTTATAAATAACCCGAGGGGTAAAC IIIIIIIIIIIIIIIIDIIIHIIII:2ICIHE449< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:560:1291 83 chr19 5960258 60 36M = 5959906 -388 TAGACTAACAACTGCAGTCTTACAATCTAACTTATC IIII7IIIBIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:560:1291 163 chr19 5959906 60 36M = 5960258 388 TTAGAGGCTAATATTTGAGGCTAACTATTCCAAGCC IIIIIIIIIIIIIIIIBFIIIIBIII>IIGI/4/<B XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1720:1202 83 chr15 7804587 60 36M = 7804207 -416 GCAGTTACCCTAACATTCTCCCTACACACAGATATC III,7IIIIIIIIIII@IIIIIFIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1720:1202 163 chr15 7804207 60 36M = 7804587 416 GCCCAGCCACGGGCTCCACGGGTTAAGAGAAGATGC IIIIIIIIIIFIIIIII4IIII3I.,I2:;1>)6C& XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:714:1665 99 chr6 9710572 60 36M = 9710898 362 GAAACTGAAATCTGCTTCCTGGTCACATCTTTCTTT IIIIIIII9IIIIIIIII7IIIIIHI<IIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:714:1665 147 chr6 9710898 60 36M = 9710572 -362 GTTCGTGTATGTCTGTCTCATTTACTACGTTTTTCT *6?IF5IIII<I4IIIFIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:814:1126 99 chr24 44733519 60 36M = 44733879 396 GCAGAAGCAGTGATCTGGGCTCCCACTTGGGTAAGG IIIIIIIIIIIIIIIIIIIIIIIIFIIIIII@III@ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:814:1126 147 chr24 44733879 60 36M = 44733519 -396 AGTGCAGAAGTAATGCAAGAATTAGAAAATCATCAT II4I5IIIIIGIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1298:1272 99 chr6 49851344 60 36M = 49851675 367 GTCTGTTTTCAAGTGGATTTCTAAAACACATCTGCA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII+?A XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1298:1272 147 chr6 49851675 60 36M = 49851344 -367 AATCTAATAAATATTAGAACAAATTAGAATTGCATG II<74IIIIII?IDIIIIIIIIII>IIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1780:1676 99 chr10 54758093 60 36M = 54758469 412 GAAAAGATGAAGATGTCAAATCAAAATTTTGGAATT IIIIIIIIIIIIIIIIIII:II9IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1780:1676 147 chr10 54758469 60 36M = 54758093 -412 CACAGCACACAGAATGATTCTTTCCATTCCTTATCA II8?8IFIEIIEII@=IIII4IIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:700:965 99 chr4 77364721 60 36M = 77365069 384 GTTCTTTATGCCTGGGCACTGGCAAGACAGGAGGGA IIIIIIIIIIIIIIIIIIIIIIIIGI>IIIIDI5IB XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:700:965 147 chr4 77365069 60 36M = 77364721 -384 TTTTAAACTTGAACTGGTTTGGTAAAGCTTTACATT IF?GIIIG9IIIIGEIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:806:1149 83 chr22 45999765 60 36M = 45999385 -416 CAATAAGGGGTCGGCTATATCAAATGTGGTATGTTC +IIDIIIIIICFIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:806:1149 163 chr22 45999385 60 36M = 45999765 416 GACCAAGGAAGTAGTCATTGTGCATGATGCTCTGGG IIIIIIII?HIIIIII?IIFIAI.I<:IG9>I?,.< XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1452:1353 99 chr10 58807606 60 36M = 58807990 420 GAATTTAAAGTTCAGTATCCAGTTCATAAAAGATTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1452:1353 147 chr10 58807990 60 36M = 58807606 -420 CTCAGACCTATCTAAGCTGAAATGACAGGAAAGAAA 7?6III5E+III<IIDD7IIII3IIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:740:1110 99 chr26 28484134 60 36M = 28484454 356 GAAATGACTGTATTAAGTATTTAAGAACAACTTCGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIII'I XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:8A27 +HWI-EAS91_1_30788AAXX:1:2:740:1110 147 chr26 28484454 60 36M = 28484134 -356 CTGCGTTTTCCCTGAAGTGGCAGTTTGTGGAGAAAC 76I;I,I=2IHI2IIIIIIIIII=IIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1688:233 83 chr28 14171283 60 36M = 14170902 -417 CAAAAATAAAAAACCTAGAAATCAGAGGTACTTTTC 3IIIIIIIIIIIIIIIIIIIIGIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1688:233 163 chr28 14170902 60 36M = 14171283 417 AACCTGTGGACCCAGGCTGCTGAAGTGGAGCATGCC IIIIIIIIIIIIIIIIIIIIII6IIGII7IIIII1I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1167:1000 99 chr2 99368079 60 36M = 99368455 412 GTTCCTCCAGAGAAACAGATTCAGTAGGGGAAAAGA IIIIIIIIIIGIIIHIII;IIIII9IIIIII>III4 XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1167:1000 147 chr2 99368455 60 36M = 99368079 -412 TTTCCCATAAAAATTACCATCACATTGGCATACACA AIC*H%I=IIIIICIIIIIII9IIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1461:1145 83 chrX 69768894 60 36M = 69768541 -389 AAATAAATAACACCTTGATGTTAAGATATTAGATGC IIIIIII<IIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1461:1145 163 chrX 69768541 60 36M = 69768894 389 TAAAGGCAATTTGATTGGACAATATTGGCAATGCCT IIIIIIIIIIIIIIIII0IE?2IIHFIIII*IB@8+ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1702:751 83 chr3 29339305 60 36M = 29338902 -439 TGCTCTTCTCCCACCCCTGGCTCCCTGGGGAGCTCC AHIEIIDIIIIIDIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1702:751 163 chr3 29338902 60 36M = 29339305 439 CAGCAGTTTGCAGCTGGCGCTGCCCGGCGCCGCCTA IIIIIIIIIIIIIIIIIIIIHIIII.DI,III>D8/ XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:690:1215 99 chr4 46913196 60 36M = 46913525 365 GAAGTTTATTCACATGTGACAAATGAGATCAAAGTG IIIIIIIIIIIIIII7I3III8AII4EIIII>5&@- XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:690:1215 147 chr4 46913525 60 36M = 46913196 -365 CACAGATGAGCATATTCCTAAAAAGAAGGACAATGA *(a);III+III.IIIII'E2IIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1719:746 83 chr20 18695923 60 36M = 18695597 -362 CAAAACAAACATCCCAGGTATCTTAACTGACCATCC 1IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +HWI-EAS91_1_30788AAXX:1:2:1719:746 163 chr20 18695597 60 36M = 18695923 362 TGCTTTTAAGAAGGAAAACTATGGTGCCAATAGTCT IIIIIIIIIIIIIIIII9IIIIII(I@I6-III(8I XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 diff -r 6555560039d6 -r fc1be2626130 tools/samtools/sam_bitwise_flag_filter.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/samtools/sam_bitwise_flag_filter.py Wed Sep 16 15:19:35 2009 -0400 @@ -0,0 +1,177 @@ +#!/usr/bin/env python + +import sys +import optparse + +def stop_err( msg ): + sys.stderr.write( msg ) + sys.exit() + +def main(): + usage = """%prog [options] + +options (listed below) default to 'None' if omitted + """ + parser = optparse.OptionParser(usage=usage) + + parser.add_option( + '--0x0001','--is_paired', + choices = ( '0','1' ), + dest='is_paired', + metavar="<0|1>", + help='The read is paired in sequencing') + + parser.add_option( + '--0x0002','--is_proper_pair', + choices = ( '0','1' ), + metavar="<0|1>", + dest='is_proper_pair', + help='The read is mapped in a proper pair') + + parser.add_option( + '--0x0004','--is_unmapped', + choices = ( '0','1' ), + metavar="<0|1>", + dest='is_unmapped', + help='The query sequence itself is unmapped') + + parser.add_option( + '--0x0008','--mate_is_unmapped', + choices = ( '0','1' ), + metavar="<0|1>", + dest='mate_is_unmapped', + help='The mate is unmapped') + + parser.add_option( + '--0x0010','--query_strand', + dest='query_strand', + metavar="<0|1>", + choices = ( '0','1' ), + help='Strand of the query: 0 = forward, 1 = reverse.') + + parser.add_option( + '--0x0020','--mate_strand', + dest='mate_strand', + metavar="<0|1>", + choices = ('0','1'), + help='Strand of the mate: 0 = forward, 1 = reverse.') + + parser.add_option( + '--0x0040','--is_first', + choices = ( '0','1' ), + metavar="<0|1>", + dest='is_first', + help='The read is the first read in a pair') + + parser.add_option( + '--0x0080','--is_second', + choices = ( '0','1' ), + metavar="<0|1>", + dest='is_second', + help='The read is the second read in a pair') + + parser.add_option( + '--0x0100','--is_not_primary', + choices = ( '0','1' ), + metavar="<0|1>", + dest='is_not_primary', + help='The alignment for the given read is not primary') + + parser.add_option( + '--0x0200','--is_bad_quality', + choices = ( '0','1' ), + metavar="<0|1>", + dest='is_bad_quality', + help='The read fails platform/vendor quality checks') + + parser.add_option( + '--0x0400','--is_duplicate', + choices = ( '0','1' ), + metavar="<0|1>", + dest='is_duplicate', + help='The read is either a PCR or an optical duplicate') + + parser.add_option( + '-f','--input_sam_file', + metavar="INPUT_SAM_FILE", + dest='input_sam', + default = False, + help='Name of the SAM file to be filtered. STDIN is default') + + parser.add_option( + '-c','--flag_column', + dest='flag_col', + default = '2', + help='Column containing SAM bitwise flag. 1-based') + + parser.add_option( + '-d','--debug', + dest='debug', + action='store_true', + default = False, + help='Print debugging info') + + options, args = parser.parse_args() + + if options.input_sam: + infile = open ( options.input_sam, 'r') + else: + infile = sys.stdin + + option_values = { '0': False, '1': True, None: None } + + states = []; + states.append( option_values[ options.is_paired ] ) + states.append( option_values[ options.is_proper_pair ] ) + states.append( option_values[ options.is_unmapped ] ) + states.append( option_values[ options.mate_is_unmapped ] ) + states.append( option_values[ options.query_strand ] ) + states.append( option_values[ options.mate_strand ] ) + states.append( option_values[ options.is_first ] ) + states.append( option_values[ options.is_second ] ) + states.append( option_values[ options.is_not_primary ] ) + states.append( option_values[ options.is_bad_quality ] ) + states.append( option_values[ options.is_duplicate ] ) + + for line in infile: + line = line.rstrip( '\r\n' ) + if line and not line.startswith( '#' ): + fields = line.split( '\t' ) + sam_states = [] + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0001 ) ) + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0002 ) ) + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0004 ) ) + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0008 ) ) + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0010 ) ) + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0020 ) ) + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0040 ) ) + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0080 ) ) + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0100 ) ) + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0200 ) ) + sam_states.append( bool( int( fields[ int( options.flag_col ) - 1 ] ) & 0x0400 ) ) + + joined_states = zip(states,sam_states) + searchable_fields = [] + + for i in range( len( joined_states ) ): + if joined_states[i][0] != None: + searchable_fields.append( joined_states[ i ] ) + + valid_line = True + + for i in range( len( searchable_fields ) ): + if searchable_fields[i][0] != searchable_fields[i][1]: + valid_line = False + + if valid_line: + print line + if options.debug: + for i in range( len( joined_states ) ): + print i, joined_states[i][0], joined_states[i][1] + +# if skipped_lines > 0: +# print 'Skipped %d invalid lines' % skipped_lines + + +if __name__ == "__main__": main() + diff -r 6555560039d6 -r fc1be2626130 tools/samtools/sam_bitwise_flag_filter.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/samtools/sam_bitwise_flag_filter.xml Wed Sep 16 15:19:35 2009 -0400 @@ -0,0 +1,96 @@ +<tool id="sam_bw_filter" name="Filter SAM" version="1.0.0"> + <description>on bitwise flag values</description> + <command interpreter="python"> + sam_bitwise_flag_filter.py + --input_sam_file=$input1 + --flag_column=2 + #for $bit in $bits + '${bit.flags}=${bit.states}' + #end for + > $out_file1 + </command> + <inputs> + <param format="sam" name="input1" type="data" label="Select dataset to filter"/> + <repeat name="bits" title="Flag"> + <param name="flags" type="select" label="Type"> + <option value="--0x0001">Read is paired</option> + <option value="--0x0002">Read is mapped in a proper pair</option> + <option value="--0x0004">The read is unmapped</option> + <option value="--0x0008">The mate is unmapped</option> + <option value="--0x0010">Read strand</option> + <option value="--0x0020">Mate strand</option> + <option value="--0x0040">Read is the first in a pair</option> + <option value="--0x0080">Read is the second in a pair</option> + <option value="--0x0100">The alignment or this read is not primary</option> + <option value="--0x0200">The read fails platform/vendor quality checks</option> + <option value="--0x0400">The read is a PCR or optical duplicate</option> + </param> + <param name="states" type="select" display="radio" label="Set the states for this flag"> + <option value="0">No</option> + <option value="1">Yes</option> + </param> + </repeat> + </inputs> + <outputs> + <data format="sam" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="input1" value="sam_bw_filter.sam" ftype="sam"/> + <param name="flags" value="Read is mapped in a proper pair"/> + <param name="states" value="1"/> + <output name="out_file1" file="sam_bw_filter_0002-yes.sam" ftype="sam"/> + </test> + </tests> + <help> + +**What it does** + +Allows parsing SAM datasets using bitwise flag (the second column). The bits in the flag are defined as follows:: + + Bit Info + ------ -------------------------------------------------------------------------- + 0x0001 the read is paired in sequencing, no matter whether it is mapped in a pair + 0x0002 the read is mapped in a proper pair (depends on the protocol, normally + inferred during alignment) 1 + 0x0004 the query sequence itself is unmapped + 0x0008 the mate is unmapped 1 + 0x0010 strand of the query (0 for forward; 1 for reverse strand) + 0x0020 strand of the mate 1 + 0x0040 the read is the first read in a pair (see below) + 0x0080 the read is the second read in a pair (see below) + 0x0100 the alignment is not primary (a read having split hits may + have multiple primary alignment records) + 0x0200 the read fails platform/vendor quality checks + 0x0400 the read is either a PCR duplicate or an optical duplicate + +Note the following: + +- Flag 0x02, 0x08, 0x20, 0x40 and 0x80 are only meaningful when flag 0x01 is present. +- If in a read pair the information on which read is the first in the pair is lost in the upstream analysis, flag 0x01 should be present and 0x40 and 0x80 are both zero. + +----- + +**Example** + +Suppose the following dataset was generated with BWA mapper:: + + r001 163 ref 7 30 8M2I4M1D3M = 37 39 TTAGATAAAGGATACTA * + r002 0 ref 9 30 3S6M1P1I4M * 0 0 AAAAGATAAGGATA * + r003 0 ref 9 30 5H6M * 0 0 AGCTAA * NM:i:1 + r004 0 ref 16 30 6M14N5M * 0 0 ATAGCTTCAGC * + r003 16 ref 29 30 6H5M * 0 0 TAGGC * NM:i:0 + r001 83 ref 37 30 9M = 7 -39 CAGCGCCAT * + +To select properly mapped pairs click the **Add new Flag** button and set *Read mapped in a proper pair* to **Yes**. The following two reads will be returned:: + + r001 163 ref 7 30 8M2I4M1D3M = 37 39 TTAGATAAAGGATACTA * + r001 83 ref 37 30 9M = 7 -39 CAGCGCCAT * + +For more information please consult the `SAM format description`__. + +.. __: http://www.ncbi.nlm.nih.gov/pubmed/19505943 + + + </help> +</tool>

1 0

[hg] galaxy 2705: merge
by Nate Coraor 16 Sep '09

16 Sep '09

details: http://www.bx.psu.edu/hg/galaxy/rev/e2d37ea1a436 changeset: 2705:e2d37ea1a436 user: Nate Coraor <nate(a)bx.psu.edu> date: Wed Sep 16 15:30:17 2009 -0400 description: merge 0 file(s) affected in this change: diffs (39 lines): diff -r fc1be2626130 -r e2d37ea1a436 eggs.ini --- a/eggs.ini Wed Sep 16 15:19:35 2009 -0400 +++ b/eggs.ini Wed Sep 16 15:30:17 2009 -0400 @@ -23,7 +23,6 @@ python_lzo = 1.08 threadframe = 0.2 guppy = 0.1.8 -numpy = 1.2.1 [eggs:noplatform] Beaker = 1.4 @@ -63,7 +62,6 @@ ; source location, necessary for scrambling [source] -numpy = http://downloads.sourceforge.net/numpy/numpy-1.2.1.tar.gz bx_python = http://bitbucket.org/james_taylor/bx-python/get/4bf1f32e6b76.bz2 Cheetah = http://voxel.dl.sourceforge.net/sourceforge/cheetahtemplate/Cheetah-1.0.tar… DRMAA_python = http://gridengine.sunsource.net/files/documents/7/36/DRMAA-python-0.2.tar.gz diff -r fc1be2626130 -r e2d37ea1a436 lib/galaxy/jobs/__init__.py --- a/lib/galaxy/jobs/__init__.py Wed Sep 16 15:19:35 2009 -0400 +++ b/lib/galaxy/jobs/__init__.py Wed Sep 16 15:30:17 2009 -0400 @@ -495,8 +495,14 @@ shutil.move( dataset_path.false_path, dataset_path.real_path ) log.debug( "finish(): Moved %s to %s" % ( dataset_path.false_path, dataset_path.real_path ) ) except ( IOError, OSError ): - self.fail( "Job %s's output dataset(s) could not be read" % job.id ) - return + # this can happen if Galaxy is restarted during the job's + # finish method - the false_path file has already moved, + # and when the job is recovered, it won't be found. + if os.path.exists( dataset_path.real_path ) and os.stat( dataset_path.real_path ).st_size > 0: + log.warning( "finish(): %s not found, but %s is not empty, so it will be used instead" % ( dataset_path.false_path, dataset_path.real_path ) ) + else: + self.fail( "Job %s's output dataset(s) could not be read" % job.id ) + return job_context = ExpressionContext( dict( stdout = stdout, stderr = stderr ) ) for dataset_assoc in job.output_datasets: context = self.get_dataset_finish_context( job_context, dataset_assoc.dataset.dataset )

1 0

[hg] galaxy 2703: remove numpy egg
by Nate Coraor 16 Sep '09

16 Sep '09

details: http://www.bx.psu.edu/hg/galaxy/rev/79446c87dba7 changeset: 2703:79446c87dba7 user: Nate Coraor <nate(a)bx.psu.edu> date: Wed Sep 16 15:22:45 2009 -0400 description: remove numpy egg 2 file(s) affected in this change: eggs.ini lib/galaxy/jobs/__init__.py diffs (39 lines): diff -r 6555560039d6 -r 79446c87dba7 eggs.ini --- a/eggs.ini Wed Sep 16 14:55:55 2009 -0400 +++ b/eggs.ini Wed Sep 16 15:22:45 2009 -0400 @@ -23,7 +23,6 @@ python_lzo = 1.08 threadframe = 0.2 guppy = 0.1.8 -numpy = 1.2.1 [eggs:noplatform] Beaker = 1.4 @@ -63,7 +62,6 @@ ; source location, necessary for scrambling [source] -numpy = http://downloads.sourceforge.net/numpy/numpy-1.2.1.tar.gz bx_python = http://bitbucket.org/james_taylor/bx-python/get/4bf1f32e6b76.bz2 Cheetah = http://voxel.dl.sourceforge.net/sourceforge/cheetahtemplate/Cheetah-1.0.tar… DRMAA_python = http://gridengine.sunsource.net/files/documents/7/36/DRMAA-python-0.2.tar.gz diff -r 6555560039d6 -r 79446c87dba7 lib/galaxy/jobs/__init__.py --- a/lib/galaxy/jobs/__init__.py Wed Sep 16 14:55:55 2009 -0400 +++ b/lib/galaxy/jobs/__init__.py Wed Sep 16 15:22:45 2009 -0400 @@ -495,8 +495,14 @@ shutil.move( dataset_path.false_path, dataset_path.real_path ) log.debug( "finish(): Moved %s to %s" % ( dataset_path.false_path, dataset_path.real_path ) ) except ( IOError, OSError ): - self.fail( "Job %s's output dataset(s) could not be read" % job.id ) - return + # this can happen if Galaxy is restarted during the job's + # finish method - the false_path file has already moved, + # and when the job is recovered, it won't be found. + if os.path.exists( dataset_path.real_path ) and os.stat( dataset_path.real_path ).st_size > 0: + log.warning( "finish(): %s not found, but %s is not empty, so it will be used instead" % ( dataset_path.false_path, dataset_path.real_path ) ) + else: + self.fail( "Job %s's output dataset(s) could not be read" % job.id ) + return job_context = ExpressionContext( dict( stdout = stdout, stderr = stderr ) ) for dataset_assoc in job.output_datasets: context = self.get_dataset_finish_context( job_context, dataset_assoc.dataset.dataset )

1 0

[hg] galaxy 2702: fastx_clipper tool config problem resolved
by Nate Coraor 16 Sep '09

16 Sep '09

details: http://www.bx.psu.edu/hg/galaxy/rev/6555560039d6 changeset: 2702:6555560039d6 user: guru date: Wed Sep 16 14:55:55 2009 -0400 description: fastx_clipper tool config problem resolved 1 file(s) affected in this change: tools/fastx_toolkit/fastx_clipper.xml diffs (11 lines): diff -r 86dde83cab76 -r 6555560039d6 tools/fastx_toolkit/fastx_clipper.xml --- a/tools/fastx_toolkit/fastx_clipper.xml Wed Sep 16 14:06:14 2009 -0400 +++ b/tools/fastx_toolkit/fastx_clipper.xml Wed Sep 16 14:55:55 2009 -0400 @@ -52,7 +52,6 @@ #functional test with param value starting with - fails. <tests> <test> -  <param name="input" value="fastx_clipper1.fastq" /> <param name="maxmismatches" value="2" /> <param name="minlength" value="15" />

1 0

[hg] galaxy 2701: Use a grid for admin user management, still ne...
by Nate Coraor 16 Sep '09

16 Sep '09

details: http://www.bx.psu.edu/hg/galaxy/rev/86dde83cab76 changeset: 2701:86dde83cab76 user: Greg Von Kuster <greg(a)bx.psu.edu> date: Wed Sep 16 14:06:14 2009 -0400 description: Use a grid for admin user management, still needs some polishing, but a good start. 20 file(s) affected in this change: lib/galaxy/web/controllers/admin.py lib/galaxy/web/controllers/history.py lib/galaxy/web/controllers/page.py lib/galaxy/web/controllers/requests.py lib/galaxy/web/controllers/requests_admin.py lib/galaxy/web/framework/helpers/grids.py templates/admin/dataset_security/deleted_groups.mako templates/admin/dataset_security/deleted_roles.mako templates/admin/dataset_security/groups.mako templates/admin/dataset_security/roles.mako templates/admin/dataset_security/user.mako templates/admin/dataset_security/users.mako templates/admin/user/create.mako templates/admin/user/deleted_users.mako templates/admin/user/grid.mako templates/admin/user/reset_password.mako templates/admin/user/user.mako templates/history/grid.mako test/base/twilltestcase.py test/functional/test_security_and_libraries.py diffs (1508 lines): diff -r c40962280e72 -r 86dde83cab76 lib/galaxy/web/controllers/admin.py --- a/lib/galaxy/web/controllers/admin.py Wed Sep 16 12:39:57 2009 -0400 +++ b/lib/galaxy/web/controllers/admin.py Wed Sep 16 14:06:14 2009 -0400 @@ -4,10 +4,88 @@ from galaxy.web.base.controller import * from galaxy.model.orm import * from galaxy.web.controllers.forms import get_all_forms, get_form_widgets +from galaxy.web.framework.helpers import time_ago, iff, grids import logging log = logging.getLogger( __name__ ) +class UserListGrid( grids.Grid ): + class EmailColumn( grids.GridColumn ): + def get_value( self, trans, grid, user ): + return user.email + class UserNameColumn( grids.GridColumn ): + def get_value( self, trans, grid, user ): + if user.username: + return user.username + return 'not set' + class GroupsColumn( grids.GridColumn ): + def get_value( self, trans, grid, user ): + if user.groups: + return len( user.groups ) + return 0 + class RolesColumn( grids.GridColumn ): + def get_value( self, trans, grid, user ): + if user.roles: + return len( user.roles ) + return 0 + class ExternalColumn( grids.GridColumn ): + def get_value( self, trans, grid, user ): + if user.external: + return 'yes' + return 'no' + class LastLoginColumn( grids.GridColumn ): + def get_value( self, trans, grid, user ): + if user.galaxy_sessions: + return self.format( user.galaxy_sessions[ 0 ].update_time ) + return 'never' + # Grid definition + title = "Users" + model_class = model.User + template='/admin/user/grid.mako' + columns = [ + EmailColumn( "Email", link=( lambda item: dict( operation="user", id=item.id ) ), attach_popup=True ), + UserNameColumn( "User Name", attach_popup=False ), + GroupsColumn( "Groups", attach_popup=False ), + RolesColumn( "Roles", attach_popup=False ), + ExternalColumn( "External", attach_popup=False ), + LastLoginColumn( "Last Login", format=time_ago ), + # Valid for filtering but invisible + grids.GridColumn( "Deleted", key="deleted", visible=False ) + ] + operations = [ + grids.GridOperation( "reset_password", condition=( lambda item: not item.deleted ), allow_multiple=True ) + ] + #TODO: enhance to account for trans.app.config.allow_user_deletion here so that we can eliminate these operations if + # the setting is False + operations.append( grids.GridOperation( "delete", condition=( lambda item: not item.deleted ), allow_multiple=True ) ) + operations.append( grids.GridOperation( "undelete", condition=( lambda item: item.deleted ), allow_multiple=True ) ) + operations.append( grids.GridOperation( "purge", condition=( lambda item: item.deleted ), allow_multiple=True ) ) + standard_filters = [ + grids.GridColumnFilter( "Active", args=dict( deleted=False ) ), + grids.GridColumnFilter( "Deleted", args=dict( deleted=True ) ), + grids.GridColumnFilter( "All", args=dict( deleted='All' ) ) + ] + default_filter = dict( deleted=False ) + def get_current_item( self, trans ): + return trans.user + def build_initial_query( self, session ): + return session.query( self.model_class ) + def apply_default_filter( self, trans, query, **kwargs ): + email_filter = kwargs.get( "email_filter", None ) + if email_filter: + if email_filter == 'all': + return query + else: + return query.filter( or_( trans.app.model.User.table.c.email.like( '%s' % email_filter.lower() + '%' ), + trans.app.model.User.table.c.email.like( '%s' % email_filter.upper() + '%' ) ) ) + elif query.count() > 200: + return query.filter( or_( trans.app.model.User.table.c.email.like( 'A%' ), + trans.app.model.User.table.c.email.like( 'a%' ) ) ) + return query + class Admin( BaseController ): + + user_list_grid = UserListGrid() + @web.expose @web.require_admin def index( self, trans, **kwd ): @@ -438,34 +516,41 @@ # Galaxy User Stuff @web.expose @web.require_admin - def create_new_user( self, trans, **kwd ): - params = util.Params( kwd ) - msg = util.restore_text( params.get( 'msg', '' ) ) + def create_new_user( self, trans, **kwargs ): email = '' password = '' confirm = '' subscribe = False - messagetype = params.get( 'messagetype', 'done' ) - if 'user_create_button' in kwd: - if 'email' in kwd: - email = kwd[ 'email' ] - if 'password' in kwd: - password = kwd[ 'password' ] - if 'confirm' in kwd: - confirm = kwd[ 'confirm' ] - if 'subscribe' in kwd: - subscribe = kwd[ 'subscribe' ] - messagetype = 'error' - if len( email ) == 0 or "@" not in email or "." not in email: - msg = "Please enter a real email address" + email_filter = kwargs.get( 'email_filter', 'A' ) + if 'user_create_button' in kwargs: + message = '' + status = '' + email = kwargs.get( 'email' , None ) + password = kwargs.get( 'password', None ) + confirm = kwargs.get( 'confirm', None ) + subscribe = kwargs.get( 'subscribe', None ) + if not email: + message = 'Enter a valid email address' + elif not password: + message = 'Enter a valid password' + elif not confirm: + message = 'Confirm the password' + elif len( email ) == 0 or "@" not in email or "." not in email: + message = 'Enter a real email address' elif len( email) > 255: - msg = "Email address exceeds maximum allowable length" + message = 'Email address exceeds maximum allowable length' elif trans.app.model.User.filter( trans.app.model.User.table.c.email==email ).first(): - msg = "User with that email already exists" + message = 'A user with that email already exists' elif len( password ) < 6: - msg = "Please use a password of at least 6 characters" + message = 'Use a password of at least 6 characters' elif password != confirm: - msg = "Passwords do not match" + message = 'Passwords do not match' + if message: + trans.response.send_redirect( web.url_for( controller='admin', + action='users', + email_filter=email_filter, + message=util.sanitize_text( message ), + status='error' ) ) else: user = trans.app.model.User( email=email ) user.set_password_cleartext( password ) @@ -474,20 +559,22 @@ user.flush() trans.app.security_agent.create_private_user_role( user ) trans.app.security_agent.user_set_default_permissions( user, history=False, dataset=False ) - trans.log_event( "Admin created a new account for user %s" % email ) - msg = 'Created new user account' - messagetype = 'done' + message = 'Created new user account (%s)' % user.email + status = 'done' #subscribe user to email list if subscribe: mail = os.popen( "%s -t" % trans.app.config.sendmail_path, 'w' ) mail.write( "To: %s\nFrom: %s\nSubject: Join Mailing List\n\nJoin Mailing list." % ( trans.app.config.mailing_join_addr, email ) ) if mail.close(): - msg + ". However, subscribing to the mailing list has failed." - messagetype = 'error' - trans.response.send_redirect( web.url_for( action='users', msg=util.sanitize_text( msg ), messagetype=messagetype ) ) + message + ". However, subscribing to the mailing list has failed." + status = 'error' + trans.response.send_redirect( web.url_for( controller='admin', + action='users', + email_filter=email_filter, + message=util.sanitize_text( message ), + status=status ) ) return trans.fill_template( '/admin/user/create.mako', - msg=msg, - messagetype=messagetype, + email_filter=email_filter, email=email, password=password, confirm=confirm, @@ -495,56 +582,76 @@ @web.expose @web.require_admin def reset_user_password( self, trans, **kwd ): - params = util.Params( kwd ) - msg = util.restore_text( params.get( 'msg', '' ) ) - user_id = int( params.user_id ) - user = trans.app.model.User.filter( trans.app.model.User.table.c.id==user_id ).first() - password = '' - confirm = '' - messagetype = params.get( 'messagetype', 'done' ) + id = kwd.get( 'id', None ) + if not id: + message = "No user ids received for resetting passwords" + trans.response.send_redirect( web.url_for( action='users', message=message, status='error' ) ) + ids = util.listify( id ) if 'reset_user_password_button' in kwd: - if 'password' in kwd: - password = kwd[ 'password' ] - if 'confirm' in kwd: - confirm = kwd[ 'confirm' ] - messagetype = 'error' - if len( password ) < 6: - msg = "Please use a password of at least 6 characters" - elif password != confirm: - msg = "Passwords do not match" - else: - user.set_password_cleartext( password ) - user.flush() - trans.log_event( "Admin reset password for user %s" % user.email ) - msg = 'Password reset' - messagetype = 'done' - trans.response.send_redirect( web.url_for( action='users', msg=util.sanitize_text( msg ), messagetype=messagetype ) ) + message = '' + status = '' + for user_id in ids: + user = get_user( trans, user_id ) + password = kwd.get( 'password', None ) + confirm = kwd.get( 'confirm' , None ) + if len( password ) < 6: + message = "Please use a password of at least 6 characters" + status = 'error' + break + elif password != confirm: + message = "Passwords do not match" + status = 'error' + break + else: + user.set_password_cleartext( password ) + user.flush() + if not message and not status: + message = "Passwords reset for %d users" % len( ids ) + status = 'done' + trans.response.send_redirect( web.url_for( action='users', + message=util.sanitize_text( message ), + status=status ) ) + users = [ get_user( trans, user_id ) for user_id in ids ] + if len( ids ) > 1: + id=','.join( id ) return trans.fill_template( '/admin/user/reset_password.mako', - msg=msg, - messagetype=messagetype, - user=user, - password=password, - confirm=confirm ) + id=id, + users=users, + password='', + confirm='' ) @web.expose @web.require_admin def mark_user_deleted( self, trans, **kwd ): - params = util.Params( kwd ) - msg = util.restore_text( params.get( 'msg', '' ) ) - messagetype = params.get( 'messagetype', 'done' ) - user = trans.app.model.User.get( int( params.user_id ) ) - user.deleted = True - user.flush() - msg = "User '%s' has been marked as deleted." % user.email - trans.response.send_redirect( web.url_for( action='users', msg=util.sanitize_text( msg ), messagetype='done' ) ) + id = kwd.get( 'id', None ) + if not id: + message = "No user ids received for deleting" + trans.response.send_redirect( web.url_for( action='users', message=message, status='error' ) ) + ids = util.listify( id ) + for user_id in ids: + user = get_user( trans, user_id ) + user.deleted = True + user.flush() + message = "Deleted %d users" % len( ids ) + trans.response.send_redirect( web.url_for( action='users', message=util.sanitize_text( message ), status='done' ) ) @web.expose @web.require_admin def undelete_user( self, trans, **kwd ): - params = util.Params( kwd ) - user = trans.app.model.User.get( int( params.user_id ) ) - user.deleted = False - user.flush() - msg = "User '%s' has been marked as not deleted." % user.email - trans.response.send_redirect( web.url_for( action='users', msg=util.sanitize_text( msg ), messagetype='done' ) ) + id = kwd.get( 'id', None ) + if not id: + message = "No user ids received for undeleting" + trans.response.send_redirect( web.url_for( action='users', message=message, status='error' ) ) + ids = util.listify( id ) + count = 0 + for user_id in ids: + user = get_user( trans, user_id ) + if user.deleted: + user.deleted = False + user.flush() + count += 1 + message = "Undeleted %d users" % count + trans.response.send_redirect( web.url_for( action='users', + message=util.sanitize_text( message ), + status='done' ) ) @web.expose @web.require_admin def purge_user( self, trans, **kwd ): @@ -559,86 +666,111 @@ # - UserGroupAssociation where user_id == User.id # - UserRoleAssociation where user_id == User.id EXCEPT FOR THE PRIVATE ROLE # Purging Histories and Datasets must be handled via the cleanup_datasets.py script - params = util.Params( kwd ) - user = trans.app.model.User.get( int( params.user_id ) ) - if not user.deleted: - # We should never reach here, but just in case there is a bug somewhere... - msg = "User '%s' has not been deleted, so it cannot be purged." % user.email - trans.response.send_redirect( web.url_for( action='users', msg=util.sanitize_text( msg ), messagetype='error' ) ) - private_role = trans.app.security_agent.get_private_user_role( user ) - # Delete History - for h in user.active_histories: - h.refresh() - for hda in h.active_datasets: - # Delete HistoryDatasetAssociation - d = trans.app.model.Dataset.get( hda.dataset_id ) - # Delete Dataset - if not d.deleted: - d.deleted = True - d.flush() - hda.deleted = True - hda.flush() - h.deleted = True - h.flush() - # Delete UserGroupAssociations - for uga in user.groups: - uga.delete() - uga.flush() - # Delete UserRoleAssociations EXCEPT FOR THE PRIVATE ROLE - for ura in user.roles: - if ura.role_id != private_role.id: - ura.delete() - ura.flush() - # Purge the user - user.purged = True - user.flush() - msg = "User '%s' has been marked as purged." % user.email - trans.response.send_redirect( web.url_for( action='deleted_users', msg=util.sanitize_text( msg ), messagetype='done' ) ) + id = kwd.get( 'id', None ) + if not id: + message = "No user ids received for purging" + trans.response.send_redirect( web.url_for( action='users', + message=util.sanitize_text( message ), + status='error' ) ) + ids = util.listify( id ) + for user_id in ids: + user = get_user( trans, user_id ) + if not user.deleted: + # We should never reach here, but just in case there is a bug somewhere... + message = "User '%s' has not been deleted, so it cannot be purged." % user.email + trans.response.send_redirect( web.url_for( action='users', + message=util.sanitize_text( message ), + status='error' ) ) + private_role = trans.app.security_agent.get_private_user_role( user ) + # Delete History + for h in user.active_histories: + h.refresh() + for hda in h.active_datasets: + # Delete HistoryDatasetAssociation + d = trans.app.model.Dataset.get( hda.dataset_id ) + # Delete Dataset + if not d.deleted: + d.deleted = True + d.flush() + hda.deleted = True + hda.flush() + h.deleted = True + h.flush() + # Delete UserGroupAssociations + for uga in user.groups: + uga.delete() + uga.flush() + # Delete UserRoleAssociations EXCEPT FOR THE PRIVATE ROLE + for ura in user.roles: + if ura.role_id != private_role.id: + ura.delete() + ura.flush() + # Purge the user + user.purged = True + user.flush() + message = "Purged %d users" % len( ids ) + trans.response.send_redirect( web.url_for( controller='admin', + action='users', + message=util.sanitize_text( message ), + status='done' ) ) @web.expose @web.require_admin - def deleted_users( self, trans, **kwd ): - params = util.Params( kwd ) - msg = util.restore_text( params.get( 'msg', '' ) ) - messagetype = params.get( 'messagetype', 'done' ) - users = trans.app.model.User.filter( and_( trans.app.model.User.table.c.deleted==True, trans.app.model.User.table.c.purged==False ) ) \ - .order_by( trans.app.model.User.table.c.email ) \ - .all() - return trans.fill_template( '/admin/user/deleted_users.mako', users=users, msg=msg, messagetype=messagetype ) - @web.expose - @web.require_admin - def users( self, trans, **kwd ): - params = util.Params( kwd ) - msg = util.restore_text( params.get( 'msg', '' ) ) - messagetype = params.get( 'messagetype', 'done' ) - users = trans.app.model.User.filter( trans.app.model.User.table.c.deleted==False ).order_by( trans.app.model.User.table.c.email ).all() - return trans.fill_template( '/admin/dataset_security/users.mako', - users=users, - allow_user_deletion=trans.app.config.allow_user_deletion, - msg=msg, - messagetype=messagetype ) + def users( self, trans, **kwargs ): + if 'operation' in kwargs: + operation = kwargs['operation'].lower() + if operation == "user": + return self.user( trans, **kwargs ) + if operation == "reset_password": + return self.reset_user_password( trans, **kwargs ) + if operation == "delete": + return self.mark_user_deleted( trans, **kwargs ) + if operation == "undelete": + return self.undelete_user( trans, **kwargs ) + if operation == "purge": + return self.purge_user( trans, **kwargs ) + if operation == "create": + return self.create_new_user( trans, **kwargs ) + # Render the list view + return self.user_list_grid( trans, **kwargs ) @web.expose @web.require_admin def user( self, trans, **kwd ): - params = util.Params( kwd ) - msg = util.restore_text( params.get( 'msg', '' ) ) - messagetype = params.get( 'messagetype', 'done' ) - user = trans.app.model.User.get( int( params.user_id ) ) + user_id = kwd.get( 'id', None ) + message = '' + status = '' + if not user_id: + message += "Invalid user id (%s) received" % str( user_id ) + trans.response.send_redirect( web.url_for( controller='admin', + action='users', + message=util.sanitize_text( message ), + status='error' ) ) + user = get_user( trans, user_id ) private_role = trans.app.security_agent.get_private_user_role( user ) - if params.get( 'user_roles_groups_edit_button', False ): + if kwd.get( 'user_roles_groups_edit_button', False ): # Make sure the user is not dis-associating himself from his private role - out_roles = [ trans.app.model.Role.get( x ) for x in util.listify( params.out_roles ) ] + out_roles = kwd.get( 'out_roles', [] ) + if out_roles: + out_roles = [ trans.app.model.Role.get( x ) for x in util.listify( out_roles ) ] if private_role in out_roles: - msg += "You cannot eliminate a user's private role association. " - messagetype = 'error' - in_roles = [ trans.app.model.Role.get( x ) for x in util.listify( params.in_roles ) ] - out_groups = [ trans.app.model.Group.get( x ) for x in util.listify( params.out_groups ) ] - in_groups = [ trans.app.model.Group.get( x ) for x in util.listify( params.in_groups ) ] + message += "You cannot eliminate a user's private role association. " + status = 'error' + in_roles = kwd.get( 'in_roles', [] ) + if in_roles: + in_roles = [ trans.app.model.Role.get( x ) for x in util.listify( in_roles ) ] + out_groups = kwd.get( 'out_groups', [] ) + if out_groups: + out_groups = [ trans.app.model.Group.get( x ) for x in util.listify( out_groups ) ] + in_groups = kwd.get( 'in_groups', [] ) + if in_groups: + in_groups = [ trans.app.model.Group.get( x ) for x in util.listify( in_groups ) ] if in_roles: trans.app.security_agent.set_entity_user_associations( users=[ user ], roles=in_roles, groups=in_groups ) user.refresh() - msg += "User '%s' has been updated with %d associated roles and %d associated groups (private roles are not displayed)" % \ + message += "User '%s' has been updated with %d associated roles and %d associated groups (private roles are not displayed)" % \ ( user.email, len( in_roles ), len( in_groups ) ) - trans.response.send_redirect( web.url_for( action='users', msg=util.sanitize_text( msg ), messagetype=messagetype ) ) + trans.response.send_redirect( web.url_for( action='users', + message=util.sanitize_text( message ), + status='done' ) ) in_roles = [] out_roles = [] in_groups = [] @@ -653,20 +785,24 @@ # role, which should always be in in_roles. The check above is added as an additional # precaution, since for a period of time we were including private roles in the form fields. out_roles.append( ( role.id, role.name ) ) - for group in trans.app.model.Group.filter( trans.app.model.Group.table.c.deleted==False ).order_by( trans.app.model.Group.table.c.name ).all(): + for group in trans.app.model.Group.filter( trans.app.model.Group.table.c.deleted==False ) \ + .order_by( trans.app.model.Group.table.c.name ).all(): if group in [ x.group for x in user.groups ]: in_groups.append( ( group.id, group.name ) ) else: out_groups.append( ( group.id, group.name ) ) - msg += "User '%s' is currently associated with %d roles and is a member of %d groups" % ( user.email, len( in_roles ), len( in_groups ) ) - return trans.fill_template( '/admin/dataset_security/user.mako', + message += "User '%s' is currently associated with %d roles and is a member of %d groups" % \ + ( user.email, len( in_roles ), len( in_groups ) ) + if not status: + status = 'done' + return trans.fill_template( '/admin/user/user.mako', user=user, in_roles=in_roles, out_roles=out_roles, in_groups=in_groups, out_groups=out_groups, - msg=msg, - messagetype=messagetype ) + msg=message, + messagetype=status ) @web.expose @web.require_admin def memdump( self, trans, ids = 'None', sorts = 'None', pages = 'None', new_id = None, new_sort = None, **kwd ): @@ -749,3 +885,14 @@ else: last_updated[job.id] = '%s minutes' % int( delta.seconds / 60 ) return trans.fill_template( '/admin/jobs.mako', jobs = jobs, last_updated = last_updated, cutoff = cutoff, msg = msg, messagetype = messagetype ) + +## ---- Utility methods ------------------------------------------------------- + +def get_user( trans, id ): + """Get a User from the database by id.""" + # Load user from database + id = trans.security.decode_id( id ) + user = trans.sa_session.query( model.User ).get( id ) + if not user: + err+msg( "User not found" ) + return user diff -r c40962280e72 -r 86dde83cab76 lib/galaxy/web/controllers/history.py --- a/lib/galaxy/web/controllers/history.py Wed Sep 16 12:39:57 2009 -0400 +++ b/lib/galaxy/web/controllers/history.py Wed Sep 16 14:06:14 2009 -0400 @@ -84,7 +84,7 @@ default_filter = dict( deleted=False ) def get_current_item( self, trans ): return trans.get_history() - def apply_default_filter( self, trans, query ): + def apply_default_filter( self, trans, query, **kwargs ): return query.filter_by( user=trans.user, purged=False ) class SharedHistoryListGrid( grids.Grid ): @@ -121,7 +121,7 @@ standard_filters = [] def build_initial_query( self, session ): return session.query( self.model_class ).join( 'users_shared_with' ) - def apply_default_filter( self, trans, query ): + def apply_default_filter( self, trans, query, **kwargs ): return query.filter( model.HistoryUserShareAssociation.user == trans.user ) class HistoryController( BaseController ): diff -r c40962280e72 -r 86dde83cab76 lib/galaxy/web/controllers/page.py --- a/lib/galaxy/web/controllers/page.py Wed Sep 16 12:39:57 2009 -0400 +++ b/lib/galaxy/web/controllers/page.py Wed Sep 16 14:06:14 2009 -0400 @@ -34,7 +34,7 @@ grids.GridOperation( "View", allow_multiple=False, url_args=dict( action='display') ), grids.GridOperation( "Edit", allow_multiple=False, url_args=dict( action='edit') ) ] - def apply_default_filter( self, trans, query ): + def apply_default_filter( self, trans, query, **kwargs ): return query.filter_by( user=trans.user ) class PageController( BaseController ): diff -r c40962280e72 -r 86dde83cab76 lib/galaxy/web/controllers/requests.py --- a/lib/galaxy/web/controllers/requests.py Wed Sep 16 12:39:57 2009 -0400 +++ b/lib/galaxy/web/controllers/requests.py Wed Sep 16 14:06:14 2009 -0400 @@ -51,14 +51,12 @@ return None def get_request_type(self, trans, request): return request.type.name - def apply_default_filter( self, trans, query ): + def apply_default_filter( self, trans, query, **kwargs ): return query.filter_by( user=trans.user ) def number_of_samples(self, trans, request): return str(len(request.samples)) def get_state(self, trans, request): return request.state - - class Requests( BaseController ): request_grid = RequestsListGrid() @@ -475,10 +473,6 @@ # The folders that should not be displayed may not be a complete list, but it is ultimately passed # to the calling method to keep from re-checking the same folders when the library / folder # select lists are rendered. - # - # TODO: RC, when you add the folders select list to your request form, take advantage of the hidden_folder_ids - # so that you do not need to check those same folders yet again when populating the select list. - # libraries = odict() for library in all_libraries: can_show, hidden_folder_ids = trans.app.security_agent.show_library_item( user, roles, library, actions_to_check ) @@ -721,10 +715,6 @@ # The folders that should not be displayed may not be a complete list, but it is ultimately passed # to the calling method to keep from re-checking the same folders when the library / folder # select lists are rendered. - # - # TODO: RC, when you add the folders select list to your request form, take advantage of the hidden_folder_ids - # so that you do not need to check those same folders yet again when populating the select list. - # libraries = {} for library in all_libraries: can_show, hidden_folder_ids = trans.app.security_agent.show_library_item( user, roles, library, actions_to_check ) diff -r c40962280e72 -r 86dde83cab76 lib/galaxy/web/controllers/requests_admin.py --- a/lib/galaxy/web/controllers/requests_admin.py Wed Sep 16 12:39:57 2009 -0400 +++ b/lib/galaxy/web/controllers/requests_admin.py Wed Sep 16 14:06:14 2009 -0400 @@ -53,9 +53,6 @@ def get_request_type(self, trans, request): request_type = trans.app.model.RequestType.get(request.request_type_id) return request_type.name -# def apply_default_filter( self, trans, query ): -# return query.filter(or_(self.model_class.state==self.model_class.states.SUBMITTED, -# self.model_class.state==self.model_class.states.COMPLETE)) def number_of_samples(self, trans, request): return str(len(request.samples)) diff -r c40962280e72 -r 86dde83cab76 lib/galaxy/web/framework/helpers/grids.py --- a/lib/galaxy/web/framework/helpers/grids.py Wed Sep 16 12:39:57 2009 -0400 +++ b/lib/galaxy/web/framework/helpers/grids.py Wed Sep 16 14:06:14 2009 -0400 @@ -35,7 +35,7 @@ session = trans.sa_session # Build initial query query = self.build_initial_query( session ) - query = self.apply_default_filter( trans, query ) + query = self.apply_default_filter( trans, query, **kwargs ) # Maintain sort state in generated urls extra_url_args = {} # Process filtering arguments diff -r c40962280e72 -r 86dde83cab76 templates/admin/dataset_security/deleted_groups.mako --- a/templates/admin/dataset_security/deleted_groups.mako Wed Sep 16 12:39:57 2009 -0400 +++ b/templates/admin/dataset_security/deleted_groups.mako Wed Sep 16 14:06:14 2009 -0400 @@ -40,7 +40,7 @@ %else: <table class="manage-table colored" border="0" cellspacing="0" cellpadding="0" width="100%"> <% - render_quick_find = len( groups ) > 50 + render_quick_find = len( groups ) > 200 ctr = 0 %> %if render_quick_find: diff -r c40962280e72 -r 86dde83cab76 templates/admin/dataset_security/deleted_roles.mako --- a/templates/admin/dataset_security/deleted_roles.mako Wed Sep 16 12:39:57 2009 -0400 +++ b/templates/admin/dataset_security/deleted_roles.mako Wed Sep 16 14:06:14 2009 -0400 @@ -42,7 +42,7 @@ %else: <table class="manage-table colored" border="0" cellspacing="0" cellpadding="0" width="100%"> <% - render_quick_find = len( roles ) > 50 + render_quick_find = len( roles ) > 200 ctr = 0 %> %if render_quick_find: diff -r c40962280e72 -r 86dde83cab76 templates/admin/dataset_security/groups.mako --- a/templates/admin/dataset_security/groups.mako Wed Sep 16 12:39:57 2009 -0400 +++ b/templates/admin/dataset_security/groups.mako Wed Sep 16 14:06:14 2009 -0400 @@ -46,7 +46,7 @@ %else: <table class="manage-table colored" border="0" cellspacing="0" cellpadding="0" width="100%"> <% - render_quick_find = len( groups ) > 50 + render_quick_find = len( groups ) > 200 ctr = 0 %> %if render_quick_find: diff -r c40962280e72 -r 86dde83cab76 templates/admin/dataset_security/roles.mako --- a/templates/admin/dataset_security/roles.mako Wed Sep 16 12:39:57 2009 -0400 +++ b/templates/admin/dataset_security/roles.mako Wed Sep 16 14:06:14 2009 -0400 @@ -48,7 +48,7 @@ %else: <table class="manage-table colored" border="0" cellspacing="0" cellpadding="0" width="100%"> <% - render_quick_find = len( roles ) > 50 + render_quick_find = len( roles ) > 200 ctr = 0 %> %if render_quick_find: diff -r c40962280e72 -r 86dde83cab76 templates/admin/dataset_security/user.mako --- a/templates/admin/dataset_security/user.mako Wed Sep 16 12:39:57 2009 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,83 +0,0 @@ -<%inherit file="/base.mako"/> -<%namespace file="/message.mako" import="render_msg" /> - -<%def name="javascripts()"> - ${parent.javascripts()} - <script type="text/javascript"> - $(function(){ - $("input:text:first").focus(); - }) - </script> -</%def> - -<%def name="render_select( name, options )"> - <select name="${name}" id="${name}" style="min-width: 250px; height: 150px;" multiple> - %for option in options: - <option value="${option[0]}">${option[1]}</option> - %endfor - </select> -</%def> - -<script type="text/javascript"> -$().ready(function() { - $('#roles_add_button').click(function() { - return !$('#out_roles option:selected').remove().appendTo('#in_roles'); - }); - $('#roles_remove_button').click(function() { - return !$('#in_roles option:selected').remove().appendTo('#out_roles'); - }); - $('#groups_add_button').click(function() { - return !$('#out_groups option:selected').remove().appendTo('#in_groups'); - }); - $('#groups_remove_button').click(function() { - return !$('#in_groups option:selected').remove().appendTo('#out_groups'); - }); - $('form#associate_user_role_group').submit(function() { - $('#in_roles option').each(function(i) { - $(this).attr("selected", "selected"); - }); - $('#in_groups option').each(function(i) { - $(this).attr("selected", "selected"); - }); - }); -}); -</script> - -%if msg: - ${render_msg( msg, messagetype )} -%endif - -<div class="toolForm"> - <div class="toolFormTitle">User '${user.email}'</div> - <div class="toolFormBody"> - <form name="associate_user_role_group" id="associate_user_role_group" action="${h.url_for( action='user', user_id=user.id )}" method="post" > - <div class="form-row"> - <div style="float: left; margin-right: 10px;"> - <label>Roles associated with '${user.email}'</label> - ${render_select( "in_roles", in_roles )}<br/> - <input type="submit" id="roles_remove_button" value=">>"/> - </div> - <div> - <label>Roles not associated with '${user.email}'</label> - ${render_select( "out_roles", out_roles )}<br/> - <input type="submit" id="roles_add_button" value="<<"/> - </div> - </div> - <div class="form-row"> - <div style="float: left; margin-right: 10px;"> - <label>Groups associated with '${user.email}'</label> - ${render_select( "in_groups", in_groups )}<br/> - <input type="submit" id="groups_remove_button" value=">>"/> - </div> - <div> - <label>Groups not associated with '${user.email}'</label> - ${render_select( "out_groups", out_groups )}<br/> - <input type="submit" id="groups_add_button" value="<<"/> - </div> - </div> - <div class="form-row"> - <input type="submit" name="user_roles_groups_edit_button" value="Save"/> - </div> - </form> - </div> -</div> diff -r c40962280e72 -r 86dde83cab76 templates/admin/dataset_security/users.mako --- a/templates/admin/dataset_security/users.mako Wed Sep 16 12:39:57 2009 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,109 +0,0 @@ -<%inherit file="/base.mako"/> -<%namespace file="/message.mako" import="render_msg" /> - -## Render a row -<%def name="render_row( user, ctr, anchored, curr_anchor )"> - %if ctr % 2 == 1: - <tr class="odd_row"> - %else: - <tr> - %endif - <td> - <a href="${h.url_for( controller='admin', action='user', user_id=user.id )}">${user.email}</a> - <a id="user-${user.id}-popup" class="popup-arrow" style="display: none;">▼</a> - <div popupmenu="user-${user.id}-popup"> - <a class="action-button" href="${h.url_for( action='reset_user_password', user_id=user.id )}">Reset password</a> - <a class="action-button" href="${h.url_for( controller='admin', action='user', user_id=user.id )}">Change associated groups and roles</a> - %if allow_user_deletion: - <a class="action-button" href="${h.url_for( action='mark_user_deleted', user_id=user.id )}">Mark user deleted</a> - %endif - </div> - </td> - <td> - ${len( user.groups )} - </td> - <td> - ${len( user.roles )} - %if not anchored: - <a name="${curr_anchor}"></a> - <div style="float: right;"><a href="#TOP">top</a></div> - %endif - </td> - </tr> -</%def> - -<a name="TOP"><h2>Users</h2></a> - -<ul class="manage-table-actions"> - <li><a class="action-button" href="${h.url_for( controller='admin', action='create_new_user' )}">Create a new user</a></li> - %if allow_user_deletion: - <li><a class="action-button" href="${h.url_for( controller='admin', action='deleted_users' )}">Manage deleted users</a></li> - %endif -</ul> - -%if msg: - ${render_msg( msg, messagetype )} -%endif - -%if len( users ) == 0: - There are no Galaxy users -%else: - <table class="manage-table colored" border="0" cellspacing="0" cellpadding="0" width="100%"> - <% - render_quick_find = len( users ) > 50 - ctr = 0 - %> - %if render_quick_find: - <% - anchors = ['A','B','C','D','E','F','G','H','I','J','K','L','M','N','O','P','Q','R','S','T','U','V','W','X','Y','Z'] - anchor_loc = 0 - anchored = False - curr_anchor = 'A' - %> - <tr style="background: #EEE"> - <td colspan="3" style="border-bottom: 1px solid #D8B365; text-align: center;"> - Jump to letter: - %for a in anchors: - | <a href="#${a}">${a}</a> - %endfor - </td> - </tr> - %endif - <tr class="header"> - <td>Email</td> - <td>Groups</td> - <td>Roles</td> - </tr> - %for ctr, user in enumerate( users ): - %if render_quick_find and not user.email.upper().startswith( curr_anchor ): - <% anchored = False %> - %endif - %if render_quick_find and user.email.upper().startswith( curr_anchor ): - %if not anchored: - ${render_row( user, ctr, anchored, curr_anchor )} - <% anchored = True %> - %else: - ${render_row( user, ctr, anchored, curr_anchor )} - %endif - %elif render_quick_find: - %for anchor in anchors[ anchor_loc: ]: - %if user.email.upper().startswith( anchor ): - %if not anchored: - <% curr_anchor = anchor %> - ${render_row( user, ctr, anchored, curr_anchor )} - <% anchored = True %> - %else: - ${render_row( user, ctr, anchored, curr_anchor )} - %endif - <% - anchor_loc = anchors.index( anchor ) - break - %> - %endif - %endfor - %else: - ${render_row( user, ctr, True, '' )} - %endif - %endfor - </table> -%endif diff -r c40962280e72 -r 86dde83cab76 templates/admin/user/create.mako --- a/templates/admin/user/create.mako Wed Sep 16 12:39:57 2009 -0400 +++ b/templates/admin/user/create.mako Wed Sep 16 14:06:14 2009 -0400 @@ -8,7 +8,7 @@ <div class="toolForm"> <div class="toolFormTitle">Create user account</div> <div class="toolFormBody"> - <form name="form" action="${h.url_for( controller='admin', action='create_new_user' )}" method="post" > + <form name="form" action="${h.url_for( controller='admin', action='create_new_user', email_filter=email_filter )}" method="post" > <div class="form-row"> <label>Email address:</label> <div style="float: left; width: 250px; margin-right: 10px;"> diff -r c40962280e72 -r 86dde83cab76 templates/admin/user/deleted_users.mako --- a/templates/admin/user/deleted_users.mako Wed Sep 16 12:39:57 2009 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,91 +0,0 @@ -<%inherit file="/base.mako"/> -<%namespace file="/message.mako" import="render_msg" /> - -## Render a row -<%def name="render_row( user, ctr, anchored, curr_anchor )"> - %if ctr % 2 == 1: - <tr class="odd_row"> - %else: - <tr> - %endif - <td> - ${user.email} - <a id="user-${user.id}-popup" class="popup-arrow" style="display: none;">▼</a> - <div popupmenu="user-${user.id}-popup"> - <a class="action-button" href="${h.url_for( controller="admin", action='undelete_user', user_id=user.id )}">Undelete</a> - <a class="action-button" confirm="Purging a user will delete all of their histories, datasets, and group and role associations. Click OK to purge the user '${user.email}'" href="${h.url_for( controller="admin", action='purge_user', user_id=user.id )}">Purge</a> - </div> - %if not anchored: - <a name="${curr_anchor}"></a> - <div style="float: right;"><a href="#TOP">top</a></div> - %endif - </td> - </tr> -</%def> - -<a name="TOP"><h2>Deleted Users</h2></a> - -%if msg: - ${render_msg( msg, messagetype )} -%endif - -%if len( users ) == 0: - There are no deleted Galaxy users -%else: - <table class="manage-table colored" border="0" cellspacing="0" cellpadding="0" width="100%"> - <% - render_quick_find = len( users ) > 50 - ctr = 0 - %> - %if render_quick_find: - <% - anchors = ['A','B','C','D','E','F','G','H','I','J','K','L','M','N','O','P','Q','R','S','T','U','V','W','X','Y','Z'] - anchor_loc = 0 - anchored = False - curr_anchor = 'A' - %> - <tr style="background: #EEE"> - <td colspan="3" style="text-align: center; border-bottom: 1px solid #D8B365"> - Jump to letter: - %for a in anchors: - | <a href="#${a}">${a}</a> - %endfor - </td> - </tr> - %endif - <tr class="header"> - <td>Email</td> - </tr> - %for ctr, user in enumerate( users ): - %if render_quick_find and not user.email.upper().startswith( curr_anchor ): - <% anchored = False %> - %endif - %if render_quick_find and user.email.upper().startswith( curr_anchor ): - %if not anchored: - ${render_row( user, ctr, anchored, curr_anchor )} - <% anchored = True %> - %else: - ${render_row( user, ctr, anchored, curr_anchor )} - %endif - %elif render_quick_find: - %for anchor in anchors[ anchor_loc: ]: - %if user.email.upper().startswith( anchor ): - %if not anchored: - <% curr_anchor = anchor %> - ${render_row( user, ctr, anchored, curr_anchor )} - <% anchored = True %> - %else: - ${render_row( user, ctr, anchored, curr_anchor )} - %endif - <% - anchor_loc = anchors.index( anchor ) - break - %> - %endif - %endfor - %else: - ${render_row( user, ctr, True, '' )} - %endif - %endfor - </table> -%endif diff -r c40962280e72 -r 86dde83cab76 templates/admin/user/grid.mako --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/templates/admin/user/grid.mako Wed Sep 16 14:06:14 2009 -0400 @@ -0,0 +1,224 @@ +<%inherit file="/base.mako"/> +<%def name="title()">${grid.title}</%def> +<% from galaxy import util %> + +%if message: + <p> + <div class="${message_type}message transient-message">${util.restore_text( message )}</div> + <div style="clear: both"></div> + </p> +%endif + +<%def name="javascripts()"> + ${parent.javascripts()} + ${h.js("jquery.autocomplete", "autocomplete_tagging" )} + <script type="text/javascript"> + ## TODO: generalize and move into galaxy.base.js + $(document).ready(function() { + $(".grid").each( function() { + var grid = this; + var checkboxes = $(this).find("input.grid-row-select-checkbox"); + var update = $(this).find( "span.grid-selected-count" ); + $(checkboxes).each( function() { + $(this).change( function() { + var n = $(checkboxes).filter("[checked]").size(); + update.text( n ); + }); + }) + }); + }); + ## Can this be moved into base.mako? + %if refresh_frames: + %if 'masthead' in refresh_frames: + ## Refresh masthead == user changes (backward compatibility) + if ( parent.user_changed ) { + %if trans.user: + parent.user_changed( "${trans.user.email}", ${int( app.config.is_admin_user( trans.user ) )} ); + %else: + parent.user_changed( null, false ); + %endif + } + %endif + %if 'history' in refresh_frames: + if ( parent.frames && parent.frames.galaxy_history ) { + parent.frames.galaxy_history.location.href="${h.url_for( controller='root', action='history')}"; + if ( parent.force_right_panel ) { + parent.force_right_panel( 'show' ); + } + } + %endif + %if 'tools' in refresh_frames: + if ( parent.frames && parent.frames.galaxy_tools ) { + parent.frames.galaxy_tools.location.href="${h.url_for( controller='root', action='tool_menu')}"; + if ( parent.force_left_panel ) { + parent.force_left_panel( 'show' ); + } + } + %endif + %endif + </script> +</%def> + +<%def name="stylesheets()"> + ${h.css( "base", "autocomplete_tagging" )} + <style> + ## Not generic to all grids -- move to base? + .count-box { + min-width: 1.1em; + padding: 5px; + border-width: 1px; + border-style: solid; + text-align: center; + display: inline-block; + } + </style> +</%def> + +%if grid.standard_filters: + <div class="grid-header"> + <h2>${grid.title}</h2> + <span class="title">Filter:</span> + %for i, filter in enumerate( grid.standard_filters ): + %if i > 0: + <span>|</span> + %endif + <span class="filter"><a href="${url( filter.get_url_args() )}">${filter.label}</a></span> + %endfor + </div> +%endif + +<ul class="manage-table-actions"> + <li><a class="action-button" href="${h.url_for( controller='admin', action='users', operation='create' )}">Create a new user</a></li> +</ul> + +%if query.count() == 0: + No users were returned for the current query. Click the Show all users button or a letter below. +%endif: +<% + letters = ['A','B','C','D','E','F','G','H','I','J','K','L','M','N','O','P','Q','R','S','T','U','V','W','X','Y','Z', '0'] +%> +<div class="toolFormBody"> + <div class="form-row"> + <a class="action-button" href="${h.url_for( controller='admin', action='users', email_filter='all' )}"><span>Show all users</span></a> + <div class="toolParamHelp" style="clear: both;"> + Default behavior is displaying only users whose email begins with 'a' if there are more than 200 total users + </div> + </div> + <div class="form-row"> + <label>Show only users whose email starts with:</label> + %for letter in letters: + | <a href="${h.url_for( controller='admin', action='users', email_filter=letter )}">${letter}</a> + %endfor + <div style="clear: both"></div> + </div> + <form name="user_actions" action="${url()}" method="post"> + <table class="grid"> + <thead> + <tr> + <th></th> + %for column in grid.columns: + %if column.visible: + <% + href = "" + extra = "" + if column.sortable: + if sort_key == column.key: + if sort_order == "asc": + href = url( sort=( "-" + column.key ) ) + extra = "↓" + else: + href = url( sort=( column.key ) ) + extra = "↑" + else: + href = url( sort=column.key ) + %> + <th\ + %if column.ncells > 1: + colspan="${column.ncells}" + %endif + > + %if href: + <a href="${href}">${column.label}</a> + %else: + ${column.label} + %endif + <span>${extra}</span> + </th> + %endif + %endfor + <th></th> + </tr> + </thead> + <tbody> + %for i, item in enumerate( query ): + <tr \ + %if current_item == item: + class="current" \ + %endif + > + ## Item selection column + <td style="width: 1.5em;"> + <input type="checkbox" name="id" value=${trans.security.encode_id( item.id )} class="grid-row-select-checkbox" /> + </td> + ## Data columns + %for column in grid.columns: + %if column.visible: + <% + # Link + link = column.get_link( trans, grid, item ) + if link: + href = url( **link ) + else: + href = None + # Value (coerced to list so we can loop) + value = column.get_value( trans, grid, item ) + if column.ncells == 1: + value = [ value ] + %> + %for cellnum, v in enumerate( value ): + <% + # Attach popup menu? + if column.attach_popup and cellnum == 0: + extra = '<a id="grid-%d-popup" class="arrow" style="display: none;"><span>▼</span></a>' % i + else: + extra = "" + %> + %if href: + <td><div class="menubutton split" style="float: left;"><a class="label" href="${href}">${v}${extra}</a> </td> + %else: + <td >${v}${extra}</td> + %endif + %endfor + %endif + %endfor + ## Actions column + <td> + <div popupmenu="grid-${i}-popup"> + %for operation in grid.operations: + %if operation.allowed( item ): + <a class="action-button" href="${url( operation=operation.label, id=item.id )}">${operation.label}</a> + %endif + %endfor + </div> + </td> + </tr> + %endfor + </tbody> + %if grid.operations: + <tfoot> + <tr> + <td></td> + <td colspan="100"> + For <span class="grid-selected-count"></span> selected users: + %for operation in grid.operations: + %if operation.allow_multiple: + <input type="submit" name="operation" value="${operation.label}" class="action-button"> + %endif + %endfor + </td> + </tr> + </tfoot> + %endif + </table> + </form> +</div> diff -r c40962280e72 -r 86dde83cab76 templates/admin/user/reset_password.mako --- a/templates/admin/user/reset_password.mako Wed Sep 16 12:39:57 2009 -0400 +++ b/templates/admin/user/reset_password.mako Wed Sep 16 14:06:14 2009 -0400 @@ -6,15 +6,17 @@ %endif <div class="toolForm"> - <div class="toolFormTitle">Reset user password</div> + <div class="toolFormTitle">Reset password for users</div> <div class="toolFormBody"> <form name="form" action="${h.url_for( controller='admin', action='reset_user_password' )}" method="post" > - <input type="hidden" name="user_id" value="${user.id}" size="40"> - <div class="form-row"> - <label>Email:</label> - ${user.email} - <div style="clear: both"></div> - </div> + <input type="hidden" name="id" value="${id}" size="40"> + %for user in users: + <div class="form-row"> + <label>Email:</label> + ${user.email} + <div style="clear: both"></div> + </div> + %endfor <div class="form-row"> <label>Password:</label> <div style="float: left; width: 250px; margin-right: 10px;"> diff -r c40962280e72 -r 86dde83cab76 templates/admin/user/user.mako --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/templates/admin/user/user.mako Wed Sep 16 14:06:14 2009 -0400 @@ -0,0 +1,83 @@ +<%inherit file="/base.mako"/> +<%namespace file="/message.mako" import="render_msg" /> + +<%def name="javascripts()"> + ${parent.javascripts()} + <script type="text/javascript"> + $(function(){ + $("input:text:first").focus(); + }) + </script> +</%def> + +<%def name="render_select( name, options )"> + <select name="${name}" id="${name}" style="min-width: 250px; height: 150px;" multiple> + %for option in options: + <option value="${option[0]}">${option[1]}</option> + %endfor + </select> +</%def> + +<script type="text/javascript"> +$().ready(function() { + $('#roles_add_button').click(function() { + return !$('#out_roles option:selected').remove().appendTo('#in_roles'); + }); + $('#roles_remove_button').click(function() { + return !$('#in_roles option:selected').remove().appendTo('#out_roles'); + }); + $('#groups_add_button').click(function() { + return !$('#out_groups option:selected').remove().appendTo('#in_groups'); + }); + $('#groups_remove_button').click(function() { + return !$('#in_groups option:selected').remove().appendTo('#out_groups'); + }); + $('form#associate_user_role_group').submit(function() { + $('#in_roles option').each(function(i) { + $(this).attr("selected", "selected"); + }); + $('#in_groups option').each(function(i) { + $(this).attr("selected", "selected"); + }); + }); +}); +</script> + +%if msg: + ${render_msg( msg, messagetype )} +%endif + +<div class="toolForm"> + <div class="toolFormTitle">User '${user.email}'</div> + <div class="toolFormBody"> + <form name="associate_user_role_group" id="associate_user_role_group" action="${h.url_for( action='user', id=trans.app.security.encode_id( user.id ) )}" method="post" > + <div class="form-row"> + <div style="float: left; margin-right: 10px;"> + <label>Roles associated with '${user.email}'</label> + ${render_select( "in_roles", in_roles )}<br/> + <input type="submit" id="roles_remove_button" value=">>"/> + </div> + <div> + <label>Roles not associated with '${user.email}'</label> + ${render_select( "out_roles", out_roles )}<br/> + <input type="submit" id="roles_add_button" value="<<"/> + </div> + </div> + <div class="form-row"> + <div style="float: left; margin-right: 10px;"> + <label>Groups associated with '${user.email}'</label> + ${render_select( "in_groups", in_groups )}<br/> + <input type="submit" id="groups_remove_button" value=">>"/> + </div> + <div> + <label>Groups not associated with '${user.email}'</label> + ${render_select( "out_groups", out_groups )}<br/> + <input type="submit" id="groups_add_button" value="<<"/> + </div> + </div> + <div class="form-row"> + <input type="submit" name="user_roles_groups_edit_button" value="Save"/> + </div> + </form> + </div> +</div> diff -r c40962280e72 -r 86dde83cab76 templates/history/grid.mako --- a/templates/history/grid.mako Wed Sep 16 12:39:57 2009 -0400 +++ b/templates/history/grid.mako Wed Sep 16 14:06:14 2009 -0400 @@ -179,18 +179,20 @@ </tr> %endfor </tbody> - <tfoot> - <tr> - <td></td> - <td colspan="100"> - For <span class="grid-selected-count"></span> selected histories: - %for operation in grid.operations: - %if operation.allow_multiple: - <input type="submit" name="operation" value="${operation.label}" class="action-button"> - %endif - %endfor - </td> - </tr> - </tfoot> + %if grid.operations: + <tfoot> + <tr> + <td></td> + <td colspan="100"> + For <span class="grid-selected-count"></span> selected histories: + %for operation in grid.operations: + %if operation.allow_multiple: + <input type="submit" name="operation" value="${operation.label}" class="action-button"> + %endif + %endfor + </td> + </tr> + </tfoot> + %endif </table> </form> diff -r c40962280e72 -r 86dde83cab76 test/base/twilltestcase.py --- a/test/base/twilltestcase.py Wed Sep 16 12:39:57 2009 -0400 +++ b/test/base/twilltestcase.py Wed Sep 16 14:06:14 2009 -0400 @@ -779,8 +779,8 @@ def create_new_account_as_admin( self, email='test4(a)bx.psu.edu', password='testuser' ): """Create a new account for another user""" self.home() - self.visit_url( "%s/admin/create_new_user?email=%s&password=%s&confirm=%s&user_create_button=%s" \ - % ( self.url, email, password, password, 'Create' ) ) + self.visit_url( "%s/admin/create_new_user?email=%s&password=%s&confirm=%s&user_create_button=Create&subscribe=False" \ + % ( self.url, email, password, password ) ) try: self.check_page_for_string( "Created new user account" ) previously_created = False @@ -790,34 +790,34 @@ previously_created = True self.home() return previously_created - def reset_password_as_admin( self, user_id=4, password='testreset' ): + def reset_password_as_admin( self, user_id, password='testreset' ): """Reset a user password""" self.home() - self.visit_url( "%s/admin/reset_user_password?user_id=%s" % ( self.url, str( user_id ) ) ) + self.visit_url( "%s/admin/reset_user_password?id=%s" % ( self.url, user_id ) ) tc.fv( "1", "password", password ) tc.fv( "1", "confirm", password ) tc.submit( "reset_user_password_button" ) - self.check_page_for_string( "Password reset" ) + self.check_page_for_string( "Passwords reset for 1 users" ) self.home() - def mark_user_deleted( self, user_id=4, email='' ): + def mark_user_deleted( self, user_id, email='' ): """Mark a user as deleted""" self.home() - self.visit_url( "%s/admin/mark_user_deleted?user_id=%s" % ( self.url, str( user_id ) ) ) - check_str = "User '%s' has been marked as deleted." % email + self.visit_url( "%s/admin/mark_user_deleted?id=%s" % ( self.url, user_id ) ) + check_str = "Deleted 1 users" self.check_page_for_string( check_str ) self.home() - def undelete_user( self, user_id=4, email='' ): + def undelete_user( self, user_id, email='' ): """Undelete a user""" self.home() - self.visit_url( "%s/admin/undelete_user?user_id=%s" % ( self.url, user_id ) ) - check_str = "User '%s' has been marked as not deleted" % email + self.visit_url( "%s/admin/undelete_user?id=%s" % ( self.url, user_id ) ) + check_str = "Undeleted 1 users" self.check_page_for_string( check_str ) self.home() def purge_user( self, user_id, email ): """Purge a user account""" self.home() - self.visit_url( "%s/admin/purge_user?user_id=%s" % ( self.url, user_id ) ) - check_str = "User '%s' has been marked as purged." % email + self.visit_url( "%s/admin/purge_user?id=%s" % ( self.url, user_id ) ) + check_str = "Purged 1 users" self.check_page_for_string( check_str ) self.home() def associate_roles_and_groups_with_user( self, user_id, email, @@ -825,7 +825,7 @@ in_group_ids=[], out_group_ids=[], check_str='' ): self.home() - url = "%s/admin/user?user_id=%s&user_roles_groups_edit_button=Save" % ( self.url, user_id ) + url = "%s/admin/user?id=%s&user_roles_groups_edit_button=Save" % ( self.url, user_id ) if in_role_ids: url += "&in_roles=%s" % ','.join( in_role_ids ) if out_role_ids: diff -r c40962280e72 -r 86dde83cab76 test/functional/test_security_and_libraries.py --- a/test/functional/test_security_and_libraries.py Wed Sep 16 12:39:57 2009 -0400 +++ b/test/functional/test_security_and_libraries.py Wed Sep 16 14:06:14 2009 -0400 @@ -70,11 +70,11 @@ raise AssertionError( 'The DefaultHistoryPermission.action for history id %d is "%s", but it should be "%s"' \ % ( latest_history.id, dhp.action, galaxy.model.Dataset.permitted_actions.DATASET_MANAGE_PERMISSIONS.action ) ) self.home() - self.visit_url( "%s/admin/user?user_id=%s" % ( self.url, admin_user.id ) ) + self.visit_url( "%s/admin/user?id=%s" % ( self.url, self.security.encode_id( admin_user.id ) ) ) self.check_page_for_string( admin_user.email ) # Try deleting the admin_user's private role check_str = "You cannot eliminate a user's private role association." - self.associate_roles_and_groups_with_user( str( admin_user.id ), admin_user.email, + self.associate_roles_and_groups_with_user( self.security.encode_id( admin_user.id ), admin_user.email, out_role_ids=str( admin_user_private_role.id ), check_str=check_str ) self.logout() @@ -158,6 +158,7 @@ raise AssertionError( 'DatasetPermissionss "%s" for dataset id %d differ from DefaultHistoryPermissions "%s" for history id %d' \ % ( str( dps ), latest_dataset.id, str( dhps ), latest_history.id ) ) self.logout() + def test_015_login_as_regular_user2( self ): """Testing logging in as regular user test2(a)bx.psu.edu - tests changing DefaultHistoryPermissions for the current history""" self.login( email='test2(a)bx.psu.edu' ) # This will not be an admin user @@ -248,7 +249,7 @@ def test_025_reset_password_as_admin( self ): """Testing reseting a user password as admin""" email = 'test3(a)bx.psu.edu' - self.reset_password_as_admin( user_id=regular_user3.id, password='testreset' ) + self.reset_password_as_admin( user_id=self.security.encode_id( regular_user3.id ), password='testreset' ) self.logout() def test_030_login_after_password_reset( self ): """Testing logging in after an admin reset a password - tests DefaultHistoryPermissions for accounts created by an admin""" @@ -281,17 +282,17 @@ self.logout() # Reset the password to the default for later tests self.login( email='test(a)bx.psu.edu' ) - self.reset_password_as_admin( user_id=regular_user3.id, password='testuser' ) + self.reset_password_as_admin( user_id=self.security.encode_id( regular_user3.id ), password='testuser' ) def test_035_mark_user_deleted( self ): """Testing marking a user account as deleted""" - self.mark_user_deleted( user_id=regular_user3.id, email=regular_user3.email ) + self.mark_user_deleted( user_id=self.security.encode_id( regular_user3.id ), email=regular_user3.email ) # Deleting a user should not delete any associations regular_user3.refresh() if not regular_user3.active_histories: raise AssertionError( 'HistoryDatasetAssociations for regular_user3 were incorrectly deleted when the user was marked deleted' ) def test_040_undelete_user( self ): """Testing undeleting a user account""" - self.undelete_user( user_id=regular_user3.id, email=regular_user3.email ) + self.undelete_user( user_id=self.security.encode_id( regular_user3.id ), email=regular_user3.email ) def test_045_create_role( self ): """Testing creating new role with 3 members ( and a new group named the same ), then renaming the role""" name = 'Role One' @@ -436,7 +437,7 @@ for uga in admin_user.groups: group_ids.append( str( uga.group_id ) ) check_str = "User '%s' has been updated with %d associated roles and %d associated groups" % ( admin_user.email, len( role_ids ), len( group_ids ) ) - self.associate_roles_and_groups_with_user( str( admin_user.id ), str( admin_user.email ), + self.associate_roles_and_groups_with_user( self.security.encode_id( admin_user.id ), str( admin_user.email ), in_role_ids=role_ids, in_group_ids=group_ids, check_str=check_str ) admin_user.refresh() # admin_user should now be associated with 4 roles: private, role_one, role_two, role_three @@ -1610,9 +1611,9 @@ self.home() def test_250_purge_user( self ): """Testing purging a user account""" - self.mark_user_deleted( user_id=regular_user3.id, email=regular_user3.email ) + self.mark_user_deleted( user_id=self.security.encode_id( regular_user3.id ), email=regular_user3.email ) regular_user3.refresh() - self.purge_user( str( regular_user3.id ), regular_user3.email ) + self.purge_user( self.security.encode_id( regular_user3.id ), regular_user3.email ) regular_user3.refresh() if not regular_user3.purged: raise AssertionError( 'User %s was not marked as purged.' % regular_user3.email )

1 0

[hg] galaxy 2700: Forms:
by Nate Coraor 16 Sep '09

16 Sep '09

details: http://www.bx.psu.edu/hg/galaxy/rev/c40962280e72 changeset: 2700:c40962280e72 user: rc date: Wed Sep 16 12:39:57 2009 -0400 description: Forms: - Added 'type' and 'layout' columns to the form_definition table - Added types to forms; Request, Sample & Library info template - Added layouts to sample form definition to support multiple grids while rendering Requests: - Added 'folder_id' column to the request table - Added the Data Library Folder selectbox when creating a new request - Moved the 4 request_type methods to requests_admin from admin controller Updated the functional tests 21 file(s) affected in this change: lib/galaxy/model/__init__.py lib/galaxy/model/mapping.py lib/galaxy/model/migrate/versions/0019_request_library_folder.py lib/galaxy/web/controllers/admin.py lib/galaxy/web/controllers/forms.py lib/galaxy/web/controllers/library.py lib/galaxy/web/controllers/requests.py lib/galaxy/web/controllers/requests_admin.py lib/galaxy/web/form_builder.py templates/admin/forms/edit_form.mako templates/admin/forms/manage_forms.mako templates/admin/index.mako templates/admin/requests/add_states.mako templates/admin/requests/create_request_type.mako templates/admin/requests/manage_request_types.mako templates/admin/requests/show_request.mako templates/admin/requests/view_request_type.mako templates/requests/new_request.mako templates/requests/show_request.mako test/base/twilltestcase.py test/functional/test_forms_and_requests.py diffs (1969 lines): diff -r 1fb29bd2725a -r c40962280e72 lib/galaxy/model/__init__.py --- a/lib/galaxy/model/__init__.py Wed Sep 16 11:27:50 2009 -0400 +++ b/lib/galaxy/model/__init__.py Wed Sep 16 12:39:57 2009 -0400 @@ -1005,11 +1005,31 @@ return os.path.abspath( os.path.join( path, "metadata_%d.dat" % self.id ) ) class FormDefinition( object ): - def __init__(self, name=None, desc=None, fields=[], current_form=None): + types = Bunch( REQUEST = 'Sequencing Request Form', + SAMPLE = 'Sequencing Sample Form', + LIBRARY_INFO_TEMPLATE = 'Library information template' ) + def __init__(self, name=None, desc=None, fields=[], current_form=None, form_type=None, layout=None): self.name = name self.desc = desc self.fields = fields self.form_definition_current = current_form + self.type = form_type + self.layout = layout + def fields_of_grid(self, layout_grid_name): + fields_dict = {} + if not layout_grid_name: + for i, f in enumerate(self.fields): + fields_dict[i] = f + else: + layout_index = -1 + for index, lg_name in enumerate(self.layout): + if lg_name == layout_grid_name: + layout_index = index + break + for i, f in enumerate(self.fields): + if f['layout'] == str(layout_index): + fields_dict[i] = f + return fields_dict class FormDefinitionCurrent( object ): def __init__(self, form_definition=None): @@ -1025,13 +1045,14 @@ SUBMITTED = 'Submitted', COMPLETE = 'Complete') def __init__(self, name=None, desc=None, request_type=None, user=None, - form_values=None, library=None, state=False): + form_values=None, library=None, folder=None, state=False): self.name = name self.desc = desc self.type = request_type self.values = form_values self.user = user self.library = library + self.folder = folder self.state = state self.samples_list = [] def add_sample(self, sample_name=None, sample_desc=None, sample_values=None): diff -r 1fb29bd2725a -r c40962280e72 lib/galaxy/model/mapping.py --- a/lib/galaxy/model/mapping.py Wed Sep 16 11:27:50 2009 -0400 +++ b/lib/galaxy/model/mapping.py Wed Sep 16 12:39:57 2009 -0400 @@ -465,7 +465,9 @@ Integer, ForeignKey( "form_definition_current.id", name='for_def_form_def_current_id_fk', use_alter=True ), index=True ), - Column( "fields", JSONType() ) ) + Column( "fields", JSONType() ), + Column( "type", TrimmedString( 255 ), index=True ), + Column( "layout", JSONType() ), ) RequestType.table = Table('request_type', metadata, Column( "id", Integer, primary_key=True), @@ -494,6 +496,7 @@ Column( "request_type_id", Integer, ForeignKey( "request_type.id" ), index=True ), Column( "user_id", Integer, ForeignKey( "galaxy_user.id" ), index=True ), Column( "library_id", Integer, ForeignKey( "library.id" ), index=True ), + Column( "folder_id", Integer, ForeignKey( "library_folder.id" ), index=True ), Column( "state", TrimmedString( 255 ), index=True ), Column( "deleted", Boolean, index=True, default=False ) ) @@ -612,8 +615,10 @@ backref="requests" ), samples=relation( Sample, primaryjoin=( Request.table.c.id == Sample.table.c.request_id ) ), + folder=relation( LibraryFolder, + primaryjoin=( Request.table.c.folder_id == LibraryFolder.table.c.id ) ), library=relation( Library, - primaryjoin=( Request.table.c.library_id == Library.table.c.id ) ), + primaryjoin=( Request.table.c.library_id == Library.table.c.id ) ) ) ) assign_mapper( context, RequestType, RequestType.table, diff -r 1fb29bd2725a -r c40962280e72 lib/galaxy/model/migrate/versions/0019_request_library_folder.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/lib/galaxy/model/migrate/versions/0019_request_library_folder.py Wed Sep 16 12:39:57 2009 -0400 @@ -0,0 +1,84 @@ +from sqlalchemy import * +from sqlalchemy.orm import * +from sqlalchemy.exceptions import * +from migrate import * +from migrate.changeset import * +import datetime +now = datetime.datetime.utcnow +import sys, logging +# Need our custom types, but don't import anything else from model +from galaxy.model.custom_types import * + +log = logging.getLogger( __name__ ) +log.setLevel(logging.DEBUG) +handler = logging.StreamHandler( sys.stdout ) +format = "%(name)s %(levelname)s %(asctime)s %(message)s" +formatter = logging.Formatter( format ) +handler.setFormatter( formatter ) +log.addHandler( handler ) + +metadata = MetaData( migrate_engine ) +db_session = scoped_session( sessionmaker( bind=migrate_engine, autoflush=False, transactional=False ) ) + +def display_migration_details(): + print "========================================" + print """This script creates a request.folder_id column which is a foreign +key to the library_folder table. This also adds a 'type' and 'layout' column +to the form_definition table.""" + print "========================================" + +def upgrade(): + display_migration_details() + # Load existing tables + metadata.reflect() + # Create the folder_id column + try: + Request_table = Table( "request", metadata, autoload=True ) + except NoSuchTableError: + Request_table = None + log.debug( "Failed loading table request" ) + if Request_table: + try: + col = Column( "folder_id", Integer, index=True ) + col.create( Request_table ) + assert col is Request_table.c.folder_id + except Exception, e: + log.debug( "Adding column 'folder_id' to request table failed: %s" % ( str( e ) ) ) + try: + LibraryFolder_table = Table( "library_folder", metadata, autoload=True ) + except NoSuchTableError: + Request_table = None + log.debug( "Failed loading table library_folder" ) + # Add 1 foreign key constraint to the library_folder table + if Request_table and LibraryFolder_table: + try: + cons = ForeignKeyConstraint( [Request_table.c.folder_id], + [LibraryFolder_table.c.id], + name='request_folder_id_fk' ) + # Create the constraint + cons.create() + except Exception, e: + log.debug( "Adding foreign key constraint 'request_folder_id_fk' to table 'library_folder' failed: %s" % ( str( e ) ) ) + # Create the type column in form_definition + try: + FormDefinition_table = Table( "form_definition", metadata, autoload=True ) + except NoSuchTableError: + FormDefinition_table = None + log.debug( "Failed loading table form_definition" ) + if FormDefinition_table: + try: + col = Column( "type", TrimmedString( 255 ), index=True ) + col.create( FormDefinition_table ) + assert col is FormDefinition_table.c.type + except Exception, e: + log.debug( "Adding column 'type' to form_definition table failed: %s" % ( str( e ) ) ) + try: + col = Column( "layout", JSONType()) + col.create( FormDefinition_table ) + assert col is FormDefinition_table.c.layout + except Exception, e: + log.debug( "Adding column 'layout' to form_definition table failed: %s" % ( str( e ) ) ) + + +def downgrade(): + pass diff -r 1fb29bd2725a -r c40962280e72 lib/galaxy/web/controllers/admin.py --- a/lib/galaxy/web/controllers/admin.py Wed Sep 16 11:27:50 2009 -0400 +++ b/lib/galaxy/web/controllers/admin.py Wed Sep 16 12:39:57 2009 -0400 @@ -749,122 +749,3 @@ else: last_updated[job.id] = '%s minutes' % int( delta.seconds / 60 ) return trans.fill_template( '/admin/jobs.mako', jobs = jobs, last_updated = last_updated, cutoff = cutoff, msg = msg, messagetype = messagetype ) - @web.expose - @web.require_admin - def manage_request_types( self, trans, **kwd ): - params = util.Params( kwd ) - msg = util.restore_text( params.get( 'msg', '' ) ) - messagetype = params.get( 'messagetype', 'done' ) - show_filter = util.restore_text( params.get( 'show_filter', 'Active' ) ) - forms = get_all_forms(trans, all_versions=True) - request_types_list = trans.app.model.RequestType.query().all() - if show_filter == 'All': - request_types = request_types_list - elif show_filter == 'Deleted': - request_types = [rt for rt in request_types_list if rt.deleted] - else: - request_types = [rt for rt in request_types_list if not rt.deleted] - return trans.fill_template( '/admin/requests/manage_request_types.mako', - request_types=request_types, - forms=forms, - show_filter=show_filter, - msg=msg, - messagetype=messagetype ) - @web.expose - @web.require_admin - def request_type( self, trans, **kwd ): - params = util.Params( kwd ) - msg = util.restore_text( params.get( 'msg', '' ) ) - messagetype = params.get( 'messagetype', 'done' ) - if params.get( 'create', False ): - return trans.fill_template( '/admin/requests/create_request_type.mako', - forms=get_all_forms( trans, - filter=dict(deleted=False) ), - msg=msg, - messagetype=messagetype) - elif params.get( 'define_states_button', False ): - return trans.fill_template( '/admin/requests/add_states.mako', - request_type_name=util.restore_text( params.name ), - desc=util.restore_text( params.description ), - num_states=int(util.restore_text( params.num_states )), - request_form_id=int(util.restore_text( params.request_form_id )), - sample_form_id=int(util.restore_text( params.sample_form_id )), - msg=msg, - messagetype=messagetype) - elif params.get( 'save_request_type', False ): - st, msg = self._save_request_type(trans, **kwd) - if not st: - return trans.fill_template( '/admin/requests/create_request_type.mako', - forms=get_all_forms( trans ), - msg=msg, - messagetype='error') - return trans.response.send_redirect( web.url_for( controller='admin', - action='manage_request_types', - msg='Request type <b>%s</b> has been created' % st.name, - messagetype='done') ) - elif params.get('view', False): - rt = trans.app.model.RequestType.get(int(util.restore_text( params.id ))) - ss_list = trans.app.model.SampleState.filter(trans.app.model.SampleState.table.c.request_type_id == rt.id).all() - return trans.fill_template( '/admin/requests/view_request_type.mako', - request_type=rt, - forms=get_all_forms( trans ), - states_list=ss_list, - deleted=False, - show_deleted=False, - msg=msg, - messagetype=messagetype ) - def _save_request_type(self, trans, **kwd): - params = util.Params( kwd ) - num_states = int( util.restore_text( params.get( 'num_states', 0 ) )) - proceed = True - for i in range( num_states ): - if not util.restore_text( params.get( 'state_name_%i' % i, None ) ): - proceed = False - break - if not proceed: - msg = "All the state name(s) must be completed." - return None, msg - rt = trans.app.model.RequestType() - rt.name = util.restore_text( params.name ) - rt.desc = util.restore_text( params.description ) or "" - rt.request_form = trans.app.model.FormDefinition.get(int( params.request_form_id )) - rt.sample_form = trans.app.model.FormDefinition.get(int( params.sample_form_id )) - rt.flush() - # set sample states - ss_list = trans.app.model.SampleState.filter(trans.app.model.SampleState.table.c.request_type_id == rt.id).all() - for ss in ss_list: - ss.delete() - ss.flush() - for i in range( num_states ): - name = util.restore_text( params.get( 'state_name_%i' % i, None )) - desc = util.restore_text( params.get( 'state_desc_%i' % i, None )) - ss = trans.app.model.SampleState(name, desc, rt) - ss.flush() - msg = "The new request type named '%s' with %s state(s) has been created" % (rt.name, num_states) - return rt, msg - @web.expose - @web.require_admin - def delete_request_type( self, trans, **kwd ): - params = util.Params( kwd ) - msg = util.restore_text( params.get( 'msg', '' ) ) - messagetype = params.get( 'messagetype', 'done' ) - rt = trans.app.model.RequestType.get(int(util.restore_text( params.request_type_id ))) - rt.deleted = True - rt.flush() - return trans.response.send_redirect( web.url_for( controller='admin', - action='manage_request_types', - msg='Request type <b>%s</b> has been deleted' % rt.name, - messagetype='done') ) - @web.expose - @web.require_admin - def undelete_request_type( self, trans, **kwd ): - params = util.Params( kwd ) - msg = util.restore_text( params.get( 'msg', '' ) ) - messagetype = params.get( 'messagetype', 'done' ) - rt = trans.app.model.RequestType.get(int(util.restore_text( params.request_type_id ))) - rt.deleted = False - rt.flush() - return trans.response.send_redirect( web.url_for( controller='admin', - action='manage_request_types', - msg='Request type <b>%s</b> has been undeleted' % rt.name, - messagetype='done') ) diff -r 1fb29bd2725a -r c40962280e72 lib/galaxy/web/controllers/forms.py --- a/lib/galaxy/web/controllers/forms.py Wed Sep 16 11:27:50 2009 -0400 +++ b/lib/galaxy/web/controllers/forms.py Wed Sep 16 12:39:57 2009 -0400 @@ -31,37 +31,72 @@ show_filter = params.get( 'show_filter', 'Active' ) return self._show_forms_list(trans, msg, messagetype, show_filter) def _show_forms_list(self, trans, msg, messagetype, show_filter='Active'): - fdc_list = trans.app.model.FormDefinitionCurrent.query().all() + all_forms = trans.app.model.FormDefinitionCurrent.query().all() if show_filter == 'All': - forms_list = fdc_list + forms_list = all_forms elif show_filter == 'Deleted': - forms_list = [form for form in fdc_list if form.deleted] + forms_list = [form for form in all_forms if form.deleted] else: - forms_list = [form for form in fdc_list if not form.deleted] + forms_list = [form for form in all_forms if not form.deleted] return trans.fill_template( '/admin/forms/manage_forms.mako', fdc_list=forms_list, + all_forms=all_forms, show_filter=show_filter, msg=msg, messagetype=messagetype ) + def __form_types_widget(self, trans, selected='none'): + form_type_selectbox = SelectField( 'form_type_selectbox', + refresh_on_change=True, + refresh_on_change_values=[trans.app.model.FormDefinition.types.SAMPLE] ) + if selected == 'none': + form_type_selectbox.add_option('Select one', 'none', selected=True) + else: + form_type_selectbox.add_option('Select one', 'none') + for ft in trans.app.model.FormDefinition.types.items(): + if selected == ft[1]: + form_type_selectbox.add_option(ft[1], ft[1], selected=True) + else: + form_type_selectbox.add_option(ft[1], ft[1]) + return form_type_selectbox + @web.expose @web.require_admin def new( self, trans, **kwd ): params = util.Params( kwd ) msg = util.restore_text( params.get( 'msg', '' ) ) messagetype = params.get( 'messagetype', 'done' ) + self.__imported_from_file = False if params.get( 'create_form_button', False ): fd, msg = self.__save_form( trans, fdc_id=None, **kwd ) + if not fd: + return trans.response.send_redirect( web.url_for( controller='forms', + action='new', + msg=msg, + messagetype='error' ) ) self.__get_saved_form( fd ) - return trans.response.send_redirect( web.url_for( controller='forms', - action='edit', - form_id=fd.id, - show_form=True ) ) + if self.__imported_from_file: + return trans.response.send_redirect( web.url_for( controller='forms', + action='edit', + show_form=True, + form_id=fd.id) ) + else: + return trans.response.send_redirect( web.url_for( controller='forms', + action='edit', + form_id=fd.id, + add_field_button='Add field', + num_fields=0, + name=fd.name, + description=fd.desc, + form_type_selectbox=fd.type ) ) self.current_form = {} self.current_form[ 'name' ] = 'New Form' self.current_form[ 'desc' ] = '' + self.current_form['type'] = 'none' + self.current_form[ 'layout' ] = ['Main'] self.current_form[ 'fields' ] = [] inputs = [ ( 'Name', TextField( 'name', 40, self.current_form[ 'name' ] ) ), ( 'Description', TextField( 'description', 40, self.current_form[ 'desc' ] ) ), + ( 'Type', self.__form_types_widget(trans, selected=self.current_form['type']) ), ( 'Import from csv file (Optional)', FileField( 'file_data', 40, '' ) ) ] return trans.fill_template( '/admin/forms/create_form.mako', inputs=inputs, @@ -115,12 +150,19 @@ # The following two dicts store the unsaved select box options self.del_options = {} self.add_options = {} - if fd.fields: - return self.__show( trans=trans, form=fd, msg=msg, messagetype=messagetype, **kwd ) - else: - # If the form is empty, we'll simulate a click on the add_field_button so the - # form will be displayed with the field choice, saving a mouse click. - return self.__show( trans=trans, form=fd, msg=msg, messagetype=messagetype, empty_form=True, **kwd ) + return self.__show( trans=trans, form=fd, msg=msg, messagetype=messagetype, **kwd ) + #Add a layout grid + elif params.get( 'add_layout_grid', False ): + self.__update_current_form( trans, **kwd ) + self.__add_layout_grid() + # show the form again + return self.__show( trans=trans, form=fd, msg=msg, messagetype=messagetype, **kwd ) + # Delete a layout grid + elif params.get( 'remove_layout_grid_button', False ): + self.__update_current_form( trans, **kwd ) + index = int( kwd[ 'remove_layout_grid_button' ].split( ' ' )[2] ) - 1 + self.__remove_layout_grid( index ) + return self.__show( trans=trans, form=fd, msg=msg, messagetype=messagetype, **kwd ) # Delete a field elif params.get( 'remove_button', False ): self.__update_current_form( trans, **kwd ) @@ -163,7 +205,11 @@ elif params.get( 'select_box_options', False ) == 'add': index = int( kwd[ 'field_index' ] ) self.current_form[ 'fields' ][ index ][ 'selectlist' ].append( '' ) - return self.__show( trans=trans, form=fd, msg=msg, messagetype=messagetype, **kwd ) + return self.__show( trans=trans, form=fd, msg=msg, messagetype=messagetype, **kwd ) + def __add_layout_grid(self): + self.current_form['layout'].append('') + def __remove_layout_grid(self, index): + del self.current_form['layout'][index] def __remove_field(self, index): del self.current_form['fields'][index] def __add_field(self): @@ -175,7 +221,8 @@ 'visible': True, 'required': False, 'type': BaseField.form_field_types()[0], - 'selectlist': [] } + 'selectlist': [], + 'layout': 'none' } self.current_form['fields'].append(empty_field) def __get_field(self, index, **kwd): params = util.Params( kwd ) @@ -187,6 +234,7 @@ helptext = util.restore_text( params.get( 'field_helptext_%i' % index, '' ) ) required = params.get( 'field_required_%i' % index, False ) field_type = util.restore_text( params.get( 'field_type_%i' % index, '' ) ) + layout = params.get( 'field_layout_%i' % index, '' ) if field_type == 'SelectField': selectlist = self.__get_selectbox_options(index, **kwd) return {'label': name, @@ -194,12 +242,14 @@ 'visible': True, 'required': required, 'type': field_type, - 'selectlist': selectlist } + 'selectlist': selectlist, + 'layout': layout } return {'label': name, 'helptext': helptext, 'visible': True, 'required': required, - 'type': field_type} + 'type': field_type, + 'layout': layout} def __get_selectbox_options(self, index, **kwd): ''' This method gets all the options entered by the user for field when @@ -219,6 +269,8 @@ self.current_form = {} self.current_form['name'] = fd.name self.current_form['desc'] = fd.desc + self.current_form['type'] = fd.type + self.current_form['layout'] = list(copy.deepcopy(fd.layout)) self.current_form['fields'] = list(copy.deepcopy(fd.fields)) def __validate_form(self, **kwd): ''' @@ -230,6 +282,9 @@ # form name if not util.restore_text( params.name ): return None, 'Form name must be filled.' + # form type + if util.restore_text( params.form_type_selectbox ) == 'none': + return None, 'Form type must be selected.' # fields for i in range( len(self.current_form['fields']) ): if not util.restore_text(params.get( 'field_name_%i' % i, None )): @@ -239,6 +294,11 @@ params = util.Params( kwd ) name = util.restore_text( params.name ) desc = util.restore_text( params.description ) or "" + form_type = util.restore_text( params.form_type_selectbox ) + layout = [] + if form_type == trans.app.model.FormDefinition.types.SAMPLE: + for index in range(len(self.current_form[ 'layout' ])): + layout.append(params.get( 'grid_layout%i' % index, '' )) csv_file = params.get( 'file_data', '' ) if csv_file == '': # set form fields @@ -247,16 +307,18 @@ fields.append(self.__get_field(i, **kwd)) fields = fields else: - fields = self.__import_fields(trans, csv_file) - return name, desc, fields + fields = self.__import_fields(trans, csv_file, form_type) + return name, desc, form_type, layout, fields def __update_current_form(self, trans, **kwd): - name, desc, fields = self.__get_form(trans, **kwd) + name, desc, form_type, layout, fields = self.__get_form(trans, **kwd) self.current_form = {} self.current_form['name'] = name self.current_form['desc'] = desc + self.current_form['type'] = form_type + self.current_form['layout'] = layout self.current_form['fields'] = fields - def __import_fields(self, trans, csv_file): + def __import_fields(self, trans, csv_file, form_type): ''' "company","name of the company", "True", "required", "TextField",, "due date","turnaround time", "True", "optional", "SelectField","24 hours, 1 week, 1 month" @@ -265,20 +327,32 @@ fields = [] try: reader = csv.reader(csv_file.file) - for row in reader: - options = row[5].split(',') - fields.append({'label': row[0], - 'helptext': row[1], - 'visible': row[2], - 'required': row[3], - 'type': row[4], - 'selectlist': options}) + if form_type == trans.app.model.FormDefinition.types.SAMPLE: + for row in reader: + options = row[5].split(',') + fields.append({'label': row[0], + 'helptext': row[1], + 'visible': row[2], + 'required': row[3], + 'type': row[4], + 'selectlist': options, + 'layout':row[6]}) + else: + for row in reader: + options = row[5].split(',') + fields.append({'label': row[0], + 'helptext': row[1], + 'visible': row[2], + 'required': row[3], + 'type': row[4], + 'selectlist': options}) except: return trans.response.send_redirect( web.url_for( controller='forms', action='new', status='error', message='Error in importing <b>%s</b> file' % csv_file, **kwd)) + self.__imported_from_file = True return fields def __save_form(self, trans, fdc_id=None, **kwd): @@ -290,7 +364,7 @@ if not flag: return None, msg fd = trans.app.model.FormDefinition() - fd.name, fd.desc, fd.fields = self.__get_form(trans, **kwd) + fd.name, fd.desc, fd.type, fd.layout, fd.fields = self.__get_form(trans, **kwd) if fdc_id: # save changes to the existing form # change the pointer in the form_definition_current table to point # to this new record @@ -306,7 +380,7 @@ return fd, msg class FieldUI(object): - def __init__(self, index, field=None, field_type=None): + def __init__(self, layout_grids, index, field=None, field_type=None): ''' This method returns a list of widgets which describes a field. This includes label, helptext, type, & required/optional @@ -323,6 +397,11 @@ self.required = SelectField('field_required_'+str(index), display='radio') self.required.add_option('Required', 'required') self.required.add_option('Optional', 'optional', selected=True) + self.layout_grids = layout_grids + if layout_grids: + self.layout_selectbox = SelectField('field_layout_'+str(index)) + for index, grid_name in enumerate(layout_grids): + self.layout_selectbox.add_option("%i. %s" %(index+1, grid_name), index) if field: self.fill(field, field_type) def fill(self, field, field_type=None): @@ -350,6 +429,14 @@ self.required = SelectField('field_required_'+str(self.index), display='radio') self.required.add_option('Required', 'required', selected=True) self.required.add_option('Optional', 'optional') + # layout + if self.layout_grids: + self.layout_selectbox = SelectField('field_layout_'+str(self.index)) + for i, grid_name in enumerate(self.layout_grids): + if field['layout'] == str(i): + self.layout_selectbox.add_option("%i. %s" %(i+1, grid_name), i, selected=True) + else: + self.layout_selectbox.add_option("%i. %s" %(i+1, grid_name), i) def selectbox_ui(self, field): self.selectbox_options = [] if field['selectlist']: @@ -358,6 +445,12 @@ TextField('field_'+str(self.index)+'_option_'+str(ctr), 40, option))) def get(self): + if self.layout_grids: + return [( 'Label', self.label ), + ( 'Help text', self.helptext ), + ( 'Type', self.fieldtype, self.selectbox_options), + ( '', self.required), + ( 'Select the grid layout to place this field', self.layout_selectbox)] return [( 'Label', self.label ), ( 'Help text', self.helptext ), ( 'Type', self.fieldtype, self.selectbox_options), @@ -367,31 +460,29 @@ def label(self): return str(self.index)+'.'+self.label - def __show( self, trans, form, msg='', messagetype='done', empty_form=False, **kwd ): + def __show( self, trans, form, msg='', messagetype='done', **kwd ): ''' This method displays the form and any of the changes made to it, The empty_form param allows for this method to simulate clicking the "add_field_button" on the edit_form.mako page so that the page is displayed with the first field to be added, saving a mouse click. ''' - if empty_form: - # Send params that will simulate a button click on the add_field_button - # button on edit_form.mako. - param_dict = { 'form_id' : str( form.id ), - 'num_fields' : '0', - 'refresh' : 'true', - 'name' : form.name, - 'description' : form.desc, - 'add_field_button' : 'Add field' } - self.edit( trans, **param_dict ) params = util.Params( kwd ) # name & description form_details = [ ( 'Name', TextField( 'name', 40, self.current_form[ 'name' ] ) ), - ( 'Description', TextField( 'description', 40, self.current_form[ 'desc' ] ) ) ] + ( 'Description', TextField( 'description', 40, self.current_form[ 'desc' ] ) ), + ( 'Type', self.__form_types_widget(trans, selected=self.current_form['type']) ) ] + form_layout = [] + if self.current_form['type'] == trans.app.model.FormDefinition.types.SAMPLE: + for index, lg in enumerate(self.current_form['layout']): + form_layout.append( TextField( 'grid_layout%i' % index, 40, lg )) # fields field_details = [] for index, field in enumerate( self.current_form[ 'fields' ] ): - field_ui = self.FieldUI( index, field ) + if self.current_form['type'] == trans.app.model.FormDefinition.types.SAMPLE: + field_ui = self.FieldUI( self.current_form['layout'], index, field ) + else: + field_ui = self.FieldUI( None, index, field ) field_details.append( field_ui.get() ) return trans.fill_template( '/admin/forms/edit_form.mako', form_details=form_details, @@ -399,10 +490,12 @@ form=form, field_types=BaseField.form_field_types(), msg=msg, - messagetype=messagetype ) + messagetype=messagetype, + current_form_type=self.current_form['type'], + layout_grids=form_layout ) # Common methods for all components that use forms -def get_all_forms( trans, all_versions=False, filter=None ): +def get_all_forms( trans, all_versions=False, filter=None, form_type='All' ): ''' Return all the latest forms from the form_definition_current table if all_versions is set to True. Otherwise return all the versions @@ -418,7 +511,11 @@ fdc_list = trans.app.model.FormDefinitionCurrent.query().filter_by(**filter) else: fdc_list = trans.app.model.FormDefinitionCurrent.query().all() - return [ fdc.latest_form for fdc in fdc_list ] + if form_type == 'All': + return [ fdc.latest_form for fdc in fdc_list ] + else: + return [ fdc.latest_form for fdc in fdc_list if fdc.latest_form.type == form_type ] + def get_form_widgets( trans, form, contents=[], user=None, **kwd ): diff -r 1fb29bd2725a -r c40962280e72 lib/galaxy/web/controllers/library.py --- a/lib/galaxy/web/controllers/library.py Wed Sep 16 11:27:50 2009 -0400 +++ b/lib/galaxy/web/controllers/library.py Wed Sep 16 12:39:57 2009 -0400 @@ -1100,7 +1100,8 @@ library_id=library_id, folder_id=folder_id, ldda_id=ldda_id, - forms=get_all_forms( trans, filter=dict(deleted=False) ), + forms=get_all_forms( trans, filter=dict(deleted=False), + form_type=trans.app.model.FormDefinition.types.LIBRARY_INFO_TEMPLATE ), msg=msg, messagetype=messagetype ) @web.expose diff -r 1fb29bd2725a -r c40962280e72 lib/galaxy/web/controllers/requests.py --- a/lib/galaxy/web/controllers/requests.py Wed Sep 16 11:27:50 2009 -0400 +++ b/lib/galaxy/web/controllers/requests.py Wed Sep 16 12:39:57 2009 -0400 @@ -148,7 +148,7 @@ request_details.append(dict(label='Date created', value=request.create_time, helptext='')) - # library associated + # library associated if request.library: value = request.library.name else: @@ -156,6 +156,14 @@ request_details.append( dict( label='Data library', value=value, helptext='Data library where the resultant dataset will be stored' ) ) + # folder associated + if request.folder: + value = request.folder.name + else: + value = None + request_details.append( dict( label='Data library folder', + value=value, + helptext='Data library folder where the resultant dataset will be stored' ) ) # form fields for index, field in enumerate(request.type.request_form.fields): if field['required']: @@ -230,7 +238,7 @@ return trans.response.send_redirect( web.url_for( controller='requests', action='list', status='error', - message='Error in importing <b>%s</b> samples file' % file_obj.file, + message='Error in importing samples file', **kwd)) elif params.get('add_sample_button', False) == 'Add New': # save the all (saved+unsaved) sample info in 'current_samples' @@ -488,7 +496,9 @@ def __library_ui(self, libraries, request=None, **kwd): params = util.Params( kwd ) lib_id = params.get( 'library_id', 'none' ) - lib_list = SelectField( 'library_id', refresh_on_change=True, refresh_on_change_values=['new'] ) + lib_id_list = ['new'] + [str(lib.id) for lib in libraries.keys()] + lib_list = SelectField( 'library_id', refresh_on_change=True, refresh_on_change_values=lib_id_list ) + folders = [] if request and lib_id == 'none': if request.library: lib_id = str(request.library.id) @@ -499,23 +509,48 @@ for lib, hidden_folder_ids in libraries.items(): if str(lib.id) == lib_id: lib_list.add_option(lib.name, lib.id, selected=True) + folders.append( lib.root_folder ) + for f in lib.root_folder.folders: + if str(f.id) not in hidden_folder_ids.split(','): + folders.append( f ) else: lib_list.add_option(lib.name, lib.id) + lib_list.refresh_on_change_values.append(lib.id) if lib_id == 'new': lib_list.add_option('Create a new data library', 'new', selected=True) else: lib_list.add_option('Create a new data library', 'new') - widget = dict(label='Data library', - widget=lib_list, - helptext='Data library where the resultant dataset will be stored.') + lib_widget = dict(label='Data library', + widget=lib_list, + helptext='Data library where the resultant dataset will be stored.') + if folders: + if request: + if request.folder: + current_fid = request.folder.id + else: + current_fid = request.library.root_folder.id + else: + current_fid = params.get( 'folder_id', 'none' ) + folder_list = SelectField( 'folder_id') + for f in folders: + if str(f.id) == current_fid: + folder_list.add_option(f.name, f.id, selected=True) + else: + folder_list.add_option(f.name, f.id) + folder_widget = dict(label='Folder', + widget=folder_list, + helptext='Folder of the selected data library where the resultant dataset will be stored.') if lib_id == 'new': new_lib = dict(label='Create a new data library', widget=TextField('new_library_name', 40, util.restore_text( params.get( 'new_library_name', '' ) )), helptext='Enter a name here to request a new data library') - return [widget, new_lib] + return [lib_widget, new_lib] else: - return [widget] + if folders: + return [lib_widget, folder_widget] + else: + return [lib_widget] def __validate(self, trans, request): ''' Validates the request entered by the user @@ -546,6 +581,13 @@ library = trans.app.model.Library.get(int(params.get('library_id', None))) except: library = None + try: + folder = trans.app.model.LibraryFolder.get(int(params.get('folder_id', None))) + except: + if library: + folder = library.root_folder + else: + folder = None # fields values = [] for index, field in enumerate(request_type.request_form.fields): @@ -577,7 +619,7 @@ if not request: request = trans.app.model.Request(name, desc, request_type, trans.user, form_values, - library=library, + library=library, folder=folder, state=trans.app.model.Request.states.UNSUBMITTED) request.flush() else: @@ -587,6 +629,7 @@ request.user = trans.user request.values = form_values request.library = library + request.folder = folder request.state = trans.app.model.Request.states.UNSUBMITTED request.flush() return request diff -r 1fb29bd2725a -r c40962280e72 lib/galaxy/web/controllers/requests_admin.py --- a/lib/galaxy/web/controllers/requests_admin.py Wed Sep 16 11:27:50 2009 -0400 +++ b/lib/galaxy/web/controllers/requests_admin.py Wed Sep 16 12:39:57 2009 -0400 @@ -8,6 +8,7 @@ from galaxy.web.form_builder import * from datetime import datetime, timedelta from galaxy.web.controllers.forms import get_form_widgets +from galaxy.web.controllers.forms import get_all_forms log = logging.getLogger( __name__ ) @@ -100,6 +101,7 @@ else: self.request_grid.default_filter = dict(state=kwargs['show_filter'], deleted=False) self.request_grid.show_filter = kwargs.get('show_filter', trans.app.model.Request.states.SUBMITTED) + self.__update_request_state(trans) # Render the list view return self.request_grid( trans, **kwargs ) @web.expose @@ -553,8 +555,17 @@ else: value = None request_details.append(dict(label='Data library', - value=value, - helptext='Data library where the resultant dataset will be stored')) + value=value, + helptext='Data library where the resultant dataset will be stored')) + # folder associated + if request.folder: + value = request.folder.name + else: + value = None + request_details.append( dict( label='Data library folder', + value=value, + helptext='Data library folder where the resultant dataset will be stored' ) ) + # form fields for index, field in enumerate(request.type.request_form.fields): if field['required']: @@ -714,26 +725,31 @@ """ params = util.Params( kwd ) lib_id = params.get( 'library_id', 'none' ) - all_libraries = trans.app.model.Library.filter( trans.app.model.Library.table.c.deleted == False ) \ - .order_by( trans.app.model.Library.name ).all() - roles = user.all_roles() - actions_to_check = [ trans.app.security_agent.permitted_actions.LIBRARY_ADD ] - # The libraries dictionary looks like: { library : '1,2' }, library : '3' } - # Its keys are the libraries that should be displayed for the current user and whose values are a - # string of comma-separated folder ids, of the associated folders the should NOT be displayed. - # The folders that should not be displayed may not be a complete list, but it is ultimately passed - # to the calling method to keep from re-checking the same folders when the library / folder - # select lists are rendered. - # - # TODO: RC, when you add the folders select list to your request form, take advantage of the hidden_folder_ids - # so that you do not need to check those same folders yet again when populating the select list. - # - libraries = {} - for library in all_libraries: - can_show, hidden_folder_ids = trans.app.security_agent.show_library_item( user, roles, library, actions_to_check ) - if can_show: - libraries[ library ] = hidden_folder_ids - lib_list = SelectField( 'library_id', refresh_on_change=True, refresh_on_change_values=['new'] ) + if not user: + libraries = {} + else: + all_libraries = trans.app.model.Library.filter( trans.app.model.Library.table.c.deleted == False ) \ + .order_by( trans.app.model.Library.name ).all() + roles = user.all_roles() + actions_to_check = [ trans.app.security_agent.permitted_actions.LIBRARY_ADD ] + # The libraries dictionary looks like: { library : '1,2' }, library : '3' } + # Its keys are the libraries that should be displayed for the current user and whose values are a + # string of comma-separated folder ids, of the associated folders the should NOT be displayed. + # The folders that should not be displayed may not be a complete list, but it is ultimately passed + # to the calling method to keep from re-checking the same folders when the library / folder + # select lists are rendered. + # + # TODO: RC, when you add the folders select list to your request form, take advantage of the hidden_folder_ids + # so that you do not need to check those same folders yet again when populating the select list. + # + libraries = {} + for library in all_libraries: + can_show, hidden_folder_ids = trans.app.security_agent.show_library_item( user, roles, library, actions_to_check ) + if can_show: + libraries[ library ] = hidden_folder_ids + lib_id_list = ['new'] + [str(lib.id) for lib in libraries.keys()] + lib_list = SelectField( 'library_id', refresh_on_change=True, refresh_on_change_values=lib_id_list ) + folders = [] if request and lib_id == 'none': if request.library: lib_id = str(request.library.id) @@ -744,23 +760,48 @@ for lib, hidden_folder_ids in libraries.items(): if str(lib.id) == lib_id: lib_list.add_option(lib.name, lib.id, selected=True) + folders.append( lib.root_folder ) + for f in lib.root_folder.folders: + if str(f.id) not in hidden_folder_ids.split(','): + folders.append( f ) else: lib_list.add_option(lib.name, lib.id) + lib_list.refresh_on_change_values.append(lib.id) if lib_id == 'new': lib_list.add_option('Create a new data library', 'new', selected=True) else: lib_list.add_option('Create a new data library', 'new') - widget = dict(label='Data library', - widget=lib_list, - helptext='Data library where the resultant dataset will be stored.') + lib_widget = dict(label='Data library', + widget=lib_list, + helptext='Data library where the resultant dataset will be stored.') + if folders: + if request: + if request.folder: + current_fid = request.folder.id + else: + current_fid = request.library.root_folder.id + else: + current_fid = params.get( 'folder_id', 'none' ) + folder_list = SelectField( 'folder_id') + for f in folders: + if str(f.id) == current_fid: + folder_list.add_option(f.name, f.id, selected=True) + else: + folder_list.add_option(f.name, f.id) + folder_widget = dict(label='Folder', + widget=folder_list, + helptext='Folder of the selected data library where the resultant dataset will be stored.') if lib_id == 'new': - new_lib = dict(label='Create a new Library', + new_lib = dict(label='Create a new data library', widget=TextField('new_library_name', 40, util.restore_text( params.get( 'new_library_name', '' ) )), - helptext='Enter a library name here to request a new library') - return [widget, new_lib] + helptext='Enter a name here to request a new data library') + return [lib_widget, new_lib] else: - return [widget] + if folders: + return [lib_widget, folder_widget] + else: + return [lib_widget] def __validate(self, trans, request): ''' Validates the request entered by the user @@ -795,6 +836,13 @@ library = trans.app.model.Library.get(int(params.get('library_id', None))) except: library = None + try: + folder = trans.app.model.LibraryFolder.get(int(params.get('folder_id', None))) + except: + if library: + folder = library.root_folder + else: + folder = None # fields values = [] for index, field in enumerate(request_type.request_form.fields): @@ -826,7 +874,7 @@ if not request: request = trans.app.model.Request(name, desc, request_type, user, form_values, - library=library, + library=library, folder=folder, state=trans.app.model.Request.states.UNSUBMITTED) request.flush() else: @@ -836,6 +884,7 @@ request.user = user request.values = form_values request.library = library + request.folder = folder request.flush() return request @web.expose @@ -934,6 +983,13 @@ request_id=request.id, msg='Bar codes has been saved for this request', messagetype='done')) + + def __update_request_state(self, trans): + requests = trans.app.model.Request.query.filter_by(deleted=False, + state=trans.app.model.Request.states.SUBMITTED) + for request in requests: + self.__set_request_state(request) + def __set_request_state(self, request): # check if all the samples of the current request are in the final state complete = True @@ -1013,4 +1069,128 @@ return trans.fill_template( '/admin/samples/events.mako', events_list=events_list, sample=sample, widgets=widgets, title=title) - \ No newline at end of file + + # Request Type Stuff + @web.expose + @web.require_admin + def manage_request_types( self, trans, **kwd ): + params = util.Params( kwd ) + msg = util.restore_text( params.get( 'msg', '' ) ) + messagetype = params.get( 'messagetype', 'done' ) + show_filter = util.restore_text( params.get( 'show_filter', 'Active' ) ) + forms = get_all_forms(trans, all_versions=True) + request_types_list = trans.app.model.RequestType.query().all() + if show_filter == 'All': + request_types = request_types_list + elif show_filter == 'Deleted': + request_types = [rt for rt in request_types_list if rt.deleted] + else: + request_types = [rt for rt in request_types_list if not rt.deleted] + return trans.fill_template( '/admin/requests/manage_request_types.mako', + request_types=request_types, + forms=forms, + show_filter=show_filter, + msg=msg, + messagetype=messagetype ) + @web.expose + @web.require_admin + def request_type( self, trans, **kwd ): + params = util.Params( kwd ) + msg = util.restore_text( params.get( 'msg', '' ) ) + messagetype = params.get( 'messagetype', 'done' ) + if params.get( 'create', False ): + return trans.fill_template( '/admin/requests/create_request_type.mako', + request_forms=get_all_forms( trans, + filter=dict(deleted=False), + form_type=trans.app.model.FormDefinition.types.REQUEST ), + sample_forms=get_all_forms( trans, + filter=dict(deleted=False), + form_type=trans.app.model.FormDefinition.types.SAMPLE ), + msg=msg, + messagetype=messagetype) + elif params.get( 'define_states_button', False ): + return trans.fill_template( '/admin/requests/add_states.mako', + request_type_name=util.restore_text( params.name ), + desc=util.restore_text( params.description ), + num_states=int(util.restore_text( params.num_states )), + request_form_id=int(util.restore_text( params.request_form_id )), + sample_form_id=int(util.restore_text( params.sample_form_id )), + msg=msg, + messagetype=messagetype) + elif params.get( 'save_request_type', False ): + st, msg = self.__save_request_type(trans, **kwd) + if not st: + return trans.fill_template( '/admin/requests/create_request_type.mako', + forms=get_all_forms( trans ), + msg=msg, + messagetype='error') + return trans.response.send_redirect( web.url_for( controller='requests_admin', + action='manage_request_types', + msg='Request type <b>%s</b> has been created' % st.name, + messagetype='done') ) + elif params.get('view', False): + rt = trans.app.model.RequestType.get(int(util.restore_text( params.id ))) + ss_list = trans.app.model.SampleState.filter(trans.app.model.SampleState.table.c.request_type_id == rt.id).all() + return trans.fill_template( '/admin/requests/view_request_type.mako', + request_type=rt, + forms=get_all_forms( trans ), + states_list=ss_list, + deleted=False, + show_deleted=False, + msg=msg, + messagetype=messagetype ) + def __save_request_type(self, trans, **kwd): + params = util.Params( kwd ) + num_states = int( util.restore_text( params.get( 'num_states', 0 ) )) + proceed = True + for i in range( num_states ): + if not util.restore_text( params.get( 'state_name_%i' % i, None ) ): + proceed = False + break + if not proceed: + msg = "All the state name(s) must be completed." + return None, msg + rt = trans.app.model.RequestType() + rt.name = util.restore_text( params.name ) + rt.desc = util.restore_text( params.description ) or "" + rt.request_form = trans.app.model.FormDefinition.get(int( params.request_form_id )) + rt.sample_form = trans.app.model.FormDefinition.get(int( params.sample_form_id )) + rt.flush() + # set sample states + ss_list = trans.app.model.SampleState.filter(trans.app.model.SampleState.table.c.request_type_id == rt.id).all() + for ss in ss_list: + ss.delete() + ss.flush() + for i in range( num_states ): + name = util.restore_text( params.get( 'state_name_%i' % i, None )) + desc = util.restore_text( params.get( 'state_desc_%i' % i, None )) + ss = trans.app.model.SampleState(name, desc, rt) + ss.flush() + msg = "The new request type named '%s' with %s state(s) has been created" % (rt.name, num_states) + return rt, msg + @web.expose + @web.require_admin + def delete_request_type( self, trans, **kwd ): + params = util.Params( kwd ) + msg = util.restore_text( params.get( 'msg', '' ) ) + messagetype = params.get( 'messagetype', 'done' ) + rt = trans.app.model.RequestType.get(int(util.restore_text( params.request_type_id ))) + rt.deleted = True + rt.flush() + return trans.response.send_redirect( web.url_for( controller='requests_admin', + action='manage_request_types', + msg='Request type <b>%s</b> has been deleted' % rt.name, + messagetype='done') ) + @web.expose + @web.require_admin + def undelete_request_type( self, trans, **kwd ): + params = util.Params( kwd ) + msg = util.restore_text( params.get( 'msg', '' ) ) + messagetype = params.get( 'messagetype', 'done' ) + rt = trans.app.model.RequestType.get(int(util.restore_text( params.request_type_id ))) + rt.deleted = False + rt.flush() + return trans.response.send_redirect( web.url_for( controller='requests_admin', + action='manage_request_types', + msg='Request type <b>%s</b> has been undeleted' % rt.name, + messagetype='done') ) diff -r 1fb29bd2725a -r c40962280e72 lib/galaxy/web/form_builder.py --- a/lib/galaxy/web/form_builder.py Wed Sep 16 11:27:50 2009 -0400 +++ b/lib/galaxy/web/form_builder.py Wed Sep 16 12:39:57 2009 -0400 @@ -12,7 +12,7 @@ raise TypeError( "Abstract Method" ) @staticmethod def form_field_types(): - return ['TextField', 'TextArea', 'SelectField', 'CheckboxField', 'AddressField'] + return ['TextField', 'NumberField', 'TextArea', 'SelectField', 'CheckboxField', 'AddressField'] class TextField(BaseField): """ @@ -29,6 +29,25 @@ self.value = value or "" def get_html( self, prefix="" ): return '<input type="text" name="%s%s" size="%d" value="%s">' \ + % ( prefix, self.name, self.size, escape(str(self.value), quote=True) ) + def set_size(self, size): + self.size = int( size ) + +class NumberField(BaseField): + """ + A number input box. + + >>> print NumberField( "foo" ).get_html() + <input type="int" name="foo" size="10" value=""> + >>> print NumberField( "bins", size=4, value="12345" ).get_html() + <input type="int" name="bins" size="4" value="12345"> + """ + def __init__( self, name, size=None, value=None ): + self.name = name + self.size = int( size or 10 ) + self.value = value or "" + def get_html( self, prefix="" ): + return '<input type="int" name="%s%s" size="%d" value="%s">' \ % ( prefix, self.name, self.size, escape(str(self.value), quote=True) ) def set_size(self, size): self.size = int( size ) diff -r 1fb29bd2725a -r c40962280e72 templates/admin/forms/edit_form.mako --- a/templates/admin/forms/edit_form.mako Wed Sep 16 11:27:50 2009 -0400 +++ b/templates/admin/forms/edit_form.mako Wed Sep 16 12:39:57 2009 -0400 @@ -69,6 +69,16 @@ </div> </%def> +<%def name="render_layout( index, widget )"> + <div class="repeat-group-item"> + <div class="form-row"> + <b> ${index+1}</b> + ${widget.get_html()} + <input type="submit" name="remove_layout_grid_button" value="Remove grid ${index+1}"/> + </div> + </div> +</%def> + <div class="toolForm"> <div class="toolFormTitle">Edit form definition "${form.name}"</div> <form id="edit_form" name="edit_form" action="${h.url_for( controller='forms', action='edit', form_id=form.id, num_fields=len(form.fields) )}" method="post" > @@ -81,6 +91,18 @@ <div style="clear: both"></div> </div> %endfor + %if current_form_type == trans.app.model.FormDefinition.types.SAMPLE: + <div class="toolFormTitle">Form Layout</div> + <div class="form-row"> + <label>Layout grid names</label> + </div> + %for index, lg in enumerate(layout_grids): + ${render_layout( index, lg )} + %endfor + <div class="form-row"> + <input type="submit" name="add_layout_grid" value="Add layout grid"/> + </div> + %endif <div class="toolFormTitle">Fields (${len(form.fields)})</div> %for ctr, field in enumerate(field_details): ${render_field( ctr, field )} diff -r 1fb29bd2725a -r c40962280e72 templates/admin/forms/manage_forms.mako --- a/templates/admin/forms/manage_forms.mako Wed Sep 16 11:27:50 2009 -0400 +++ b/templates/admin/forms/manage_forms.mako Wed Sep 16 12:39:57 2009 -0400 @@ -29,6 +29,7 @@ %endif </td> <td><i>${form.desc}</i></td> + <td>${form.type}</td> </tr> </%def> @@ -41,7 +42,7 @@ </li> </ul> -%if not fdc_list: +%if not all_forms: There are no forms. %else: <div class="grid-header"> @@ -61,6 +62,7 @@ <tr> <th>Name</th> <th>Description</th> + <th>Type</th> </tr> </thead> <tbody> diff -r 1fb29bd2725a -r c40962280e72 templates/admin/index.mako --- a/templates/admin/index.mako Wed Sep 16 11:27:50 2009 -0400 +++ b/templates/admin/index.mako Wed Sep 16 12:39:57 2009 -0400 @@ -118,7 +118,7 @@ </div> <div class="toolSectionBody"> <div class="toolSectionBg"> - <div class="toolTitle"><a href="${h.url_for( controller='admin', action='manage_request_types' )}" target="galaxy_main">Manage request types</a></div> + <div class="toolTitle"><a href="${h.url_for( controller='requests_admin', action='manage_request_types' )}" target="galaxy_main">Manage request types</a></div> <div class="toolTitle"><a href="${h.url_for( controller='requests_admin', action='list')}" target="galaxy_main">Manage requests</a></div> </div> </div> diff -r 1fb29bd2725a -r c40962280e72 templates/admin/requests/add_states.mako --- a/templates/admin/requests/add_states.mako Wed Sep 16 11:27:50 2009 -0400 +++ b/templates/admin/requests/add_states.mako Wed Sep 16 12:39:57 2009 -0400 @@ -7,7 +7,7 @@ <div class="toolForm"> <div class="toolFormTitle">Create ${num_states} states for the '${request_type_name}' request type</div> - <form name="new_form_fields" action="${h.url_for( controller='admin', action='request_type', name=request_type_name, description=desc, num_states=num_states, request_form_id=request_form_id, sample_form_id=sample_form_id)}" method="post" > + <form name="new_form_fields" action="${h.url_for( controller='requests_admin', action='request_type', name=request_type_name, description=desc, num_states=num_states, request_form_id=request_form_id, sample_form_id=sample_form_id)}" method="post" > <div class="toolFormBody"> %for element_count in range( num_states ): <div class="form-row"> diff -r 1fb29bd2725a -r c40962280e72 templates/admin/requests/create_request_type.mako --- a/templates/admin/requests/create_request_type.mako Wed Sep 16 11:27:50 2009 -0400 +++ b/templates/admin/requests/create_request_type.mako Wed Sep 16 12:39:57 2009 -0400 @@ -8,11 +8,11 @@ <div class="toolForm"> <div class="toolFormTitle">Create a new request type</div> - %if not forms: - Create a form definition first to create a new request type. + %if not request_forms or not sample_forms: + Create a request & sample form definition first to create a new request type. %else: <div class="toolFormBody"> - <form name="create_request_type" action="${h.url_for( controller='admin', action='request_type')}" method="post" > + <form name="create_request_type" action="${h.url_for( controller='requests_admin', action='request_type')}" method="post" > <div class="form-row"> <label>Name:</label> <div style="float: left; width: 250px; margin-right: 10px;"> @@ -32,7 +32,7 @@ Request Form definition: </label> <select name="request_form_id"> - %for form in forms: + %for form in request_forms: <option value="${form.id}">${form.name}</option> %endfor </select> @@ -42,7 +42,7 @@ Sample Form definition: </label> <select name="sample_form_id"> - %for form in forms: + %for form in sample_forms: <option value="${form.id}">${form.name}</option> %endfor </select> diff -r 1fb29bd2725a -r c40962280e72 templates/admin/requests/manage_request_types.mako --- a/templates/admin/requests/manage_request_types.mako Wed Sep 16 11:27:50 2009 -0400 +++ b/templates/admin/requests/manage_request_types.mako Wed Sep 16 12:39:57 2009 -0400 @@ -13,7 +13,7 @@ <ul class="manage-table-actions"> <li> - <a class="action-button" href="${h.url_for( controller='admin', action='request_type', create=True )}"><span>Create a new request type</span></a> + <a class="action-button" href="${h.url_for( controller='requests_admin', action='request_type', create=True )}"><span>Create a new request type</span></a> </li> </ul> @@ -24,9 +24,9 @@ <span>|</span> %endif %if show_filter == filter: - <span class="filter"><a href="${h.url_for( controller='admin', action='manage_request_types', show_filter=filter )}"><b>${filter}</b></a></span> + <span class="filter"><a href="${h.url_for( controller='requests_admin', action='manage_request_types', show_filter=filter )}"><b>${filter}</b></a></span> %else: - <span class="filter"><a href="${h.url_for( controller='admin', action='manage_request_types', show_filter=filter )}">${filter}</a></span> + <span class="filter"><a href="${h.url_for( controller='requests_admin', action='manage_request_types', show_filter=filter )}">${filter}</a></span> %endif %endfor </div> @@ -46,7 +46,7 @@ %for request_type in request_types: <tr> <td> - <a href="${h.url_for( controller='admin', action='request_type', view='True', id=request_type.id)}">${request_type.name}</a> + <a href="${h.url_for( controller='requests_admin', action='request_type', view='True', id=request_type.id)}">${request_type.name}</a> <a id="request_type-${request_type.id}-popup" class="popup-arrow" style="display: none;">▼</a> %if request_type.deleted: <div popupmenu="request_type-${request_type.id}-popup"> diff -r 1fb29bd2725a -r c40962280e72 templates/admin/requests/show_request.mako --- a/templates/admin/requests/show_request.mako Wed Sep 16 11:27:50 2009 -0400 +++ b/templates/admin/requests/show_request.mako Wed Sep 16 12:39:57 2009 -0400 @@ -26,18 +26,39 @@ %endif </ul> -<%def name="render_sample_form( index, sample_name, sample_values )"> - <td> - <input type="text" name=sample_${index}_name value="${sample_name}" size="10"/> - <div class="toolParamHelp" style="clear: both;"> - <i>${' (required)' }</i> - </div> - </td> - <td> - </td> - %for field_index, field in enumerate(request.type.sample_form.fields): + +<%def name="render_sample_form( index, sample_name, sample_values, grid_index, fields_dict )"> + %if grid_index == 0: <td> - <input type="text" name=sample_${index}_field_${field_index} value="${sample_values[field_index]}" size="7"/> + <input type="text" name=sample_${index}_name value="${sample_name}" size="10"/> + <div class="toolParamHelp" style="clear: both;"> + <i>${' (required)' }</i> + </div> + </td> + <td> + </td> + %else: + <td> + ${sample_name} + </td> + %endif + %for field_index, field in fields_dict.items(): + <td> + %if field['type'] == 'TextField': + <input type="text" name="sample_${index}_field_${field_index}" value="${sample_values[field_index]}" size="7"/> + %elif field['type'] == 'SelectField': + <select name="sample_${index}_field_${field_index}" last_selected_value="2"> + %for option_index, option in enumerate(field['selectlist']): + %if option == sample_values[field_index]: + <option value="${option}" selected>${option}</option> + %else: + <option value="${option}">${option}</option> + %endif + %endfor + </select> + %elif field['type'] == 'CheckboxField': + <input type="checkbox" name="sample_${index}_field_${field_index}" value="Yes"/> + %endif <div class="toolParamHelp" style="clear: both;"> <i>${'('+field['required']+')' }</i> </div> @@ -45,18 +66,20 @@ %endfor </%def> -<%def name="render_sample( index, sample )"> +<%def name="render_sample( index, sample, grid_index, fields_dict )"> <td> ${sample.name} </td> - <td> - %if sample.request.unsubmitted(): - Unsubmitted - %else: - <a href="${h.url_for( controller='requests_admin', action='show_events', sample_id=sample.id)}">${sample.current_state().name}</a> - %endif - </td> - %for field_index, field in enumerate(request.type.sample_form.fields): + %if grid_index == 0: + <td> + %if sample.request.unsubmitted(): + Unsubmitted + %else: + <a href="${h.url_for( controller='requests_admin', action='show_events', sample_id=sample.id)}">${sample.current_state().name}</a> + %endif + </td> + %endif + %for field_index, field in fields_dict.items(): <td> %if sample.values.content[field_index]: ${sample.values.content[field_index]} @@ -65,7 +88,6 @@ %endif </td> %endfor - </%def> <div class="toolForm"> @@ -100,58 +122,81 @@ </div> </div> +<%def name="render_grid( grid_index, grid_name, fields_dict )"> + %if grid_name: + <div class="toolFormTitle">${grid_name}</div> + %endif + <div style="clear: both"></div> + <table class="grid"> + <thead> + <tr> + <th>No.</th> + <th>Sample Name</th> + %if grid_index == 0: + <th>State</th> + %endif + %for index, field in fields_dict.items(): + <th> + ${field['label']} + <div class="toolParamHelp" style="clear: both;"> + <i>${field['helptext']}</i> + </div> + </th> + %endfor + <th></th> + </tr> + <thead> + <tbody> + <% + request.refresh() + %> + %for sample_index, sample in enumerate(current_samples): + %if edit_mode: + <tr> + <td>${sample_index+1}</td> + ${render_sample_form( sample_index, sample[0], sample[1], grid_index, fields_dict)} + <td> + %if request.unsubmitted() and grid_index == 0: + <a class="action-button" href="${h.url_for( controller='requests', action='delete_sample', request_id=request.id, sample_id=sample_index)}"> + <img src="${h.url_for('/static/images/delete_icon.png')}" /> + <span></span></a> + %endif + </td> + </tr> + %else: + <tr> + <td>${sample_index+1}</td> + %if sample_index in range(len(request.samples)): + ${render_sample( sample_index, request.samples[sample_index], grid_index, fields_dict )} + %else: + ${render_sample_form( sample_index, sample[0], sample[1], grid_index, fields_dict)} + %endif + <td> + %if request.unsubmitted() and grid_index == 0: + <a class="action-button" href="${h.url_for( controller='requests', action='delete_sample', request_id=request.id, sample_id=sample_index)}"> + <img src="${h.url_for('/static/images/delete_icon.png')}" /> + <span></span></a> + %endif + </td> + </tr> + %endif + %endfor + </tbody> + </table> +</%def> + <div class="toolForm"> ##<div class="toolFormTitle">Samples (${len(request.samples)})</div> <form id="edit_form" name="edit_form" action="${h.url_for( controller='requests_admin', action='show_request' )}" enctype="multipart/form-data" method="post" > <div class="form-row"> %if current_samples: - <table class="grid"> - <thead> - <tr> - <th>No.</th> - <th>Sample Name</th> - <th>State</th> - %for field_index, field in enumerate(request.type.sample_form.fields): - <th> - ${field['label']} - <div class="toolParamHelp" style="clear: both;"> - <i>${field['helptext']}</i> - </div> - </th> - %endfor - <th></th> - </tr> - <thead> - <tbody> - <% - request.refresh() - %> - %for sample_index, sample in enumerate(current_samples): - %if edit_mode: - <tr> - <td>${sample_index+1}</td> - ${render_sample_form( sample_index, sample[0], sample[1])} - </tr> - %else: - <tr> - <td>${sample_index+1}</td> - %if sample_index in range(len(request.samples)): - ${render_sample( sample_index, request.samples[sample_index] )} - %else: - ${render_sample_form( sample_index, sample[0], sample[1])} - %endif - <td> - %if request.unsubmitted(): - <a class="action-button" href="${h.url_for( controller='requests_admin', action='delete_sample', request_id=request.id, sample_id=sample_index)}"> - <img src="${h.url_for('/static/images/delete_icon.png')}" /> - <span></span></a> - %endif - </td> - </tr> - %endif - %endfor - </tbody> - </table> + %if not request.type.sample_form.layout: + ${render_grid( 0, "", request.type.sample_form.fields_of_grid( None ) )} + %else: + %for grid_index, grid_name in enumerate(request.type.sample_form.layout): + ${render_grid( grid_index, grid_name, request.type.sample_form.fields_of_grid( grid_name ) )} + %endfor + %endif %else: <label>There are no samples.</label> %endif diff -r 1fb29bd2725a -r c40962280e72 templates/admin/requests/view_request_type.mako --- a/templates/admin/requests/view_request_type.mako Wed Sep 16 11:27:50 2009 -0400 +++ b/templates/admin/requests/view_request_type.mako Wed Sep 16 12:39:57 2009 -0400 @@ -11,7 +11,7 @@ <div class="toolForm"> <div class="toolFormTitle">View request type details</div> <div class="toolFormBody"> - <form name="library" action="${h.url_for( controller='admin', action='request_type', save_changes=True, create=False, id=request_type.id, num_states=num_states )}" method="post" > + <form name="library"> <div class="form-row"> <label>Name</label> ${request_type.name} diff -r 1fb29bd2725a -r c40962280e72 templates/requests/new_request.mako --- a/templates/requests/new_request.mako Wed Sep 16 11:27:50 2009 -0400 +++ b/templates/requests/new_request.mako Wed Sep 16 12:39:57 2009 -0400 @@ -58,9 +58,9 @@ <div class="form-row"> <label>${field['label']}</label> ${field['widget'].get_html()} - %if field['label'] == 'Data library' and new_library: - ${new_library.get_html()} - %endif + ##%if field['label'] == 'Data library' and new_library: + ## ${new_library.get_html()} + ##%endif <div class="toolParamHelp" style="clear: both;"> ${field['helptext']} </div> diff -r 1fb29bd2725a -r c40962280e72 templates/requests/show_request.mako --- a/templates/requests/show_request.mako Wed Sep 16 11:27:50 2009 -0400 +++ b/templates/requests/show_request.mako Wed Sep 16 12:39:57 2009 -0400 @@ -26,18 +26,40 @@ -<%def name="render_sample_form( index, sample_name, sample_values )"> - <td> - <input type="text" name=sample_${index}_name value="${sample_name}" size="10"/> - <div class="toolParamHelp" style="clear: both;"> - <i>${' (required)' }</i> - </div> - </td> - <td> - </td> - %for field_index, field in enumerate(request.type.sample_form.fields): +<%def name="render_sample_form( index, sample_name, sample_values, grid_index, fields_dict )"> + %if grid_index == 0: <td> - <input type="text" name=sample_${index}_field_${field_index} value="${sample_values[field_index]}" size="7"/> + <input type="text" name=sample_${index}_name value="${sample_name}" size="10"/> + <div class="toolParamHelp" style="clear: both;"> + <i>${' (required)' }</i> + </div> + </td> + <td> + </td> + %else: + <td> + ${sample_name} + </td> + %endif + %for field_index, field in fields_dict.items(): + <td> + %if field['type'] == 'TextField': + <input type="text" name="sample_${index}_field_${field_index}" value="${sample_values[field_index]}" size="7"/> + %elif field['type'] == 'SelectField': + <select name="sample_${index}_field_${field_index}" last_selected_value="2"> + %for option_index, option in enumerate(field['selectlist']): + %if option == sample_values[field_index]: + <option value="${option}" selected>${option}</option> + %else: + <option value="${option}">${option}</option> + %endif + %endfor + </select> + %elif field['type'] == 'CheckboxField': + <input type="checkbox" name="sample_${index}_field_${field_index}" value="Yes"/> + %elif field['type'] == 'NumberField': + <input type=int name="sample_${index}_field_${field_index}" value="${sample_values[field_index]}" size="7"/> + %endif <div class="toolParamHelp" style="clear: both;"> <i>${'('+field['required']+')' }</i> </div> @@ -45,18 +67,20 @@ %endfor </%def> -<%def name="render_sample( index, sample )"> +<%def name="render_sample( index, sample, grid_index, fields_dict )"> <td> ${sample.name} </td> - <td> - %if sample.request.unsubmitted(): - Unsubmitted - %else: - <a href="${h.url_for( controller='requests', action='show_events', sample_id=sample.id)}">${sample.current_state().name}</a> - %endif - </td> - %for field_index, field in enumerate(request.type.sample_form.fields): + %if grid_index == 0: + <td> + %if sample.request.unsubmitted(): + Unsubmitted + %else: + <a href="${h.url_for( controller='requests', action='show_events', sample_id=sample.id)}">${sample.current_state().name}</a> + %endif + </td> + %endif + %for field_index, field in fields_dict.items(): <td> %if sample.values.content[field_index]: ${sample.values.content[field_index]} @@ -105,65 +129,81 @@ </div> </div> +<%def name="render_grid( grid_index, grid_name, fields_dict )"> + %if grid_name: + <div class="toolFormTitle">${grid_name}</div> + %endif + <div style="clear: both"></div> + <table class="grid"> + <thead> + <tr> + <th>No.</th> + <th>Sample Name</th> + %if grid_index == 0: + <th>State</th> + %endif + %for index, field in fields_dict.items(): + <th> + ${field['label']} + <div class="toolParamHelp" style="clear: both;"> + <i>${field['helptext']}</i> + </div> + </th> + %endfor + <th></th> + </tr> + <thead> + <tbody> + <% + request.refresh() + %> + %for sample_index, sample in enumerate(current_samples): + %if edit_mode: + <tr> + <td>${sample_index+1}</td> + ${render_sample_form( sample_index, sample[0], sample[1], grid_index, fields_dict)} + <td> + %if request.unsubmitted() and grid_index == 0: + <a class="action-button" href="${h.url_for( controller='requests', action='delete_sample', request_id=request.id, sample_id=sample_index)}"> + <img src="${h.url_for('/static/images/delete_icon.png')}" /> + <span></span></a> + %endif + </td> + </tr> + %else: + <tr> + <td>${sample_index+1}</td> + %if sample_index in range(len(request.samples)): + ${render_sample( sample_index, request.samples[sample_index], grid_index, fields_dict )} + %else: + ${render_sample_form( sample_index, sample[0], sample[1], grid_index, fields_dict)} + %endif + <td> + %if request.unsubmitted() and grid_index == 0: + <a class="action-button" href="${h.url_for( controller='requests', action='delete_sample', request_id=request.id, sample_id=sample_index)}"> + <img src="${h.url_for('/static/images/delete_icon.png')}" /> + <span></span></a> + %endif + </td> + </tr> + %endif + %endfor + </tbody> + </table> +</%def> + <div class="toolForm"> ##<div class="toolFormTitle">Samples (${len(request.samples)})</div> <form id="show_request" name="show_request" action="${h.url_for( controller='requests', action='show_request' )}" enctype="multipart/form-data" method="post" > <div class="form-row"> - %if current_samples: - <table class="grid"> - <thead> - <tr> - <th>No.</th> - <th>Sample Name</th> - <th>State</th> - %for field_index, field in enumerate(request.type.sample_form.fields): - <th> - ${field['label']} - <div class="toolParamHelp" style="clear: both;"> - <i>${field['helptext']}</i> - </div> - </th> - %endfor - <th></th> - </tr> - <thead> - <tbody> - <% - request.refresh() - %> - %for sample_index, sample in enumerate(current_samples): - %if edit_mode: - <tr> - <td>${sample_index+1}</td> - ${render_sample_form( sample_index, sample[0], sample[1])} - <td> - %if request.unsubmitted(): - <a class="action-button" href="${h.url_for( controller='requests', action='delete_sample', request_id=request.id, sample_id=sample_index)}"> - <img src="${h.url_for('/static/images/delete_icon.png')}" /> - <span></span></a> - %endif - </td> - </tr> - %else: - <tr> - <td>${sample_index+1}</td> - %if sample_index in range(len(request.samples)): - ${render_sample( sample_index, request.samples[sample_index] )} - %else: - ${render_sample_form( sample_index, sample[0], sample[1])} - %endif - <td> - %if request.unsubmitted(): - <a class="action-button" href="${h.url_for( controller='requests', action='delete_sample', request_id=request.id, sample_id=sample_index)}"> - <img src="${h.url_for('/static/images/delete_icon.png')}" /> - <span></span></a> - %endif - </td> - </tr> - %endif - %endfor - </tbody> - </table> + %if current_samples: + %if not request.type.sample_form.layout: + ${render_grid( 0, "", request.type.sample_form.fields_of_grid( None ) )} + %else: + %for grid_index, grid_name in enumerate(request.type.sample_form.layout): + ${render_grid( grid_index, grid_name, request.type.sample_form.fields_of_grid( grid_name ) )} + %endfor + %endif %else: <div class="form-row"> <label>There are no samples.</label> diff -r 1fb29bd2725a -r c40962280e72 test/base/twilltestcase.py --- a/test/base/twilltestcase.py Wed Sep 16 11:27:50 2009 -0400 +++ b/test/base/twilltestcase.py Wed Sep 16 12:39:57 2009 -0400 @@ -972,15 +972,13 @@ self.home() # Form stuff - def create_form( self, name='Form One', desc='This is Form One', num_fields=1 ): + def create_form( self, name, desc, formtype, num_fields=1 ): """ Create a new form definition. Testing framework is still limited to only testing one instance for each repeat. This has to do with the 'flat' nature of defining test param values. Using same-named parameters down different branches (having different scope in the tool) cannot be properly tested when they both exist at the same time. - TODO: RC: create an edit_form() method that will test the addition of a new field - of a specified type. """ # TODO: RC: enhance this so that all supported field types can be passed in # and tested. If nothing is passed, all fields are TextField. @@ -988,7 +986,8 @@ self.visit_url( "%s/forms/new" % self.url ) self.check_page_for_string( 'Create a new form definition' ) tc.fv( "1", "name", name ) # form field 1 is the field named name... - tc.fv( "1", "description", desc ) # form field 1 is the field named name... + tc.fv( "1", "description", desc ) # form field 1 is the field named desc... + tc.fv( "1", "form_type_selectbox", formtype ) tc.submit( "create_form_button" ) for index in range( num_fields ): field_name = 'field_name_%i' % index @@ -1053,7 +1052,7 @@ # Requests stuff def create_request_type( self, name, desc, request_form_id, sample_form_id, states ): self.home() - self.visit_url( "%s/admin/request_type?create=True" % self.url ) + self.visit_url( "%s/requests_admin/request_type?create=True" % self.url ) self.check_page_for_string( 'Create a new request type' ) tc.fv( "1", "name", name ) tc.fv( "1", "description", desc ) @@ -1067,13 +1066,14 @@ tc.fv("1", "state_desc_%i" % index, state[1]) tc.submit( "save_request_type" ) self.check_page_for_string( "Request type <b>%s</b> has been created" % name ) - def create_request( self, request_type_id, name, desc, library_id, fields ): + def create_request( self, request_type_id, name, desc, library_id, folder_id, fields ): self.home() self.visit_url( "%s/requests/new?create=True&select_request_type=%i" % (self.url, request_type_id) ) self.check_page_for_string( 'Add a new request' ) tc.fv( "1", "name", name ) tc.fv( "1", "desc", desc ) tc.fv( "1", "library_id", str(library_id) ) + #tc.fv( "1", "folder_id", str(folder_id) ) for index, field_value in enumerate(fields): tc.fv( "1", "field_%i" % index, field_value ) tc.submit( "create_request_button" ) @@ -1088,13 +1088,14 @@ for index, field_value in enumerate(fields): tc.fv( "1", "field_%i" % index, field_value ) tc.submit( "create_request_button" ) - def edit_request( self, request_id, name, new_name, new_desc, new_library_id, new_fields): + def edit_request( self, request_id, name, new_name, new_desc, new_library_id, new_folder_id, new_fields): self.home() self.visit_url( "%s/requests/edit?request_id=%i&show=True" % (self.url, request_id) ) self.check_page_for_string( 'Edit request "%s"' % name ) tc.fv( "1", "name", new_name ) tc.fv( "1", "desc", new_desc ) tc.fv( "1", "library_id", str(new_library_id) ) + tc.fv( "1", "folder_id", str(new_folder_id) ) for index, field_value in enumerate(new_fields): tc.fv( "1", "field_%i" % index, field_value ) tc.submit( "save_changes_request_button" ) diff -r 1fb29bd2725a -r c40962280e72 test/functional/test_forms_and_requests.py --- a/test/functional/test_forms_and_requests.py Wed Sep 16 11:27:50 2009 -0400 +++ b/test/functional/test_forms_and_requests.py Wed Sep 16 12:39:57 2009 -0400 @@ -41,14 +41,17 @@ global form_one_name name = form_one_name desc = "This is Form One's description" - self.create_form( name=name, desc=desc ) + formtype = 'Sequencing Request Form' + self.create_form( name=name, desc=desc, formtype=formtype ) self.home() self.visit_page( 'forms/manage' ) self.check_page_for_string( name ) self.check_page_for_string( desc ) + self.check_page_for_string( formtype ) # Get the form_definition object for later tests form_one = galaxy.model.FormDefinition.filter( and_( galaxy.model.FormDefinition.table.c.name==name, - galaxy.model.FormDefinition.table.c.desc==desc ) ).all()[-1] + galaxy.model.FormDefinition.table.c.desc==desc, + galaxy.model.FormDefinition.table.c.type==formtype ) ).all()[-1] assert form_one is not None, 'Problem retrieving form named "%s" from the database' % name # edit form & add few more fields new_name = "Request Form (Renamed)" @@ -86,15 +89,18 @@ global form_two_name name = form_two_name desc = "This is Form One's description" - self.create_form( name=name, desc=desc ) + formtype = 'Sequencing Sample Form' + self.create_form( name=name, desc=desc, formtype=formtype ) self.home() self.visit_page( 'forms/manage' ) self.check_page_for_string( name ) self.check_page_for_string( desc ) + self.check_page_for_string( formtype ) def test_020_create_request_type( self ): """Testing creating a new requestype""" request_form = get_latest_form(form_one_name) sample_form = get_latest_form(form_two_name) + print request_form.id, sample_form.id self.create_request_type(request_type_name, "test request type", str(request_form.id), str(sample_form.id), sample_states ) global request_type @@ -147,6 +153,17 @@ # Role one members are: admin_user, regular_user1. Each of these users will be permitted to # LIBRARY_ADD, LIBRARY_MODIFY, LIBRARY_MANAGE for library items. self.set_library_permissions( str( library_one.id ), library_one.name, str( regular_user1_private_role.id ), permissions_in, permissions_out ) + # create a folder in the library + root_folder = library_one.root_folder + name = "Folder One" + self.add_folder( str( library_one.id ), str( root_folder.id ), name=name, description='' ) + global folder_one + folder_one = galaxy.model.LibraryFolder.filter( and_( galaxy.model.LibraryFolder.table.c.parent_id==root_folder.id, + galaxy.model.LibraryFolder.table.c.name==name ) ).first() + assert folder_one is not None, 'Problem retrieving library folder named "%s" from the database' % name + self.home() + self.visit_url( '%s/library_admin/browse_library?id=%s' % ( self.url, str( library_one.id ) ) ) + self.check_page_for_string( name ) # create address #self.create_address( user_address1 ) #self.check_page_for_string( 'Address <b>%s</b> has been added' % user_address1[ 'short_desc' ] ) @@ -175,7 +192,7 @@ fields = ['field one value', 'field two value', str(user_address.id)] # create the request request_name, request_desc = 'Request One', 'Request One Description' - self.create_request(request_type.id, request_name, request_desc, library_one.id, fields) + self.create_request(request_type.id, request_name, request_desc, library_one.id, folder_one.id, fields) self.check_page_for_string( request_name ) self.check_page_for_string( request_desc ) global request_one @@ -195,7 +212,7 @@ self.check_page_for_string( field_value ) # edit this request fields = ['field one value (editted)', 'field two value (editted)', str(user_address.id)] - self.edit_request(request_one.id, request_one.name, request_one.name+' (Renamed)', request_one.desc+' (Re-described)', library_one.id, fields) + self.edit_request(request_one.id, request_one.name, request_one.name+' (Renamed)', request_one.desc+' (Re-described)', library_one.id, folder_one.id, fields) request_one.refresh() self.check_page_for_string( request_name+' (Renamed)' ) self.check_page_for_string( request_desc+' (Re-described)' )

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