1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/07df6866125a/
changeset: 07df6866125a
user: richard_burhans
date: 2011-11-18 22:15:11
summary: Bug fixes for the ctd tool
affected #: 2 files
diff -r 511941e1aea7bcb24a1e30b1e8ac59bf0ba6a3d6 -r 07df6866125adb6f3723aec8303e9300338e4cdc tools/human_genome_variation/ctd.pl
--- a/tools/human_genome_variation/ctd.pl
+++ b/tools/human_genome_variation/ctd.pl
@@ -38,8 +38,8 @@
}
close FH or die "Couldn't close $in, $!\n";
-my $url = 'http://ctd.mdibl.org/tools/batchQuery.go';
-#my $url = 'http://globin.bx.psu.edu/cgi-bin/print-query';
+my $url = 'http://ctdbase.org/tools/batchQuery.go';
+#my $url = 'http://ctd.mdibl.org/tools/batchQuery.go';
my $d = join("\n", @data);
#list maintains order, where hash doesn't
#order matters at ctd
diff -r 511941e1aea7bcb24a1e30b1e8ac59bf0ba6a3d6 -r 07df6866125adb6f3723aec8303e9300338e4cdc tools/human_genome_variation/ctd.xml
--- a/tools/human_genome_variation/ctd.xml
+++ b/tools/human_genome_variation/ctd.xml
@@ -29,13 +29,10 @@
<when value="genes"><!-- do nothing --></when>
- <when value="pathways">
+ <when value="pathways_inferred"><!-- do nothing --></when>
- <when value="pathways_curated">
- <!-- do nothing -->
- </when>
- <when value="pathways_inferred">
+ <when value="pathways_enriched"><!-- do nothing --></when><when value="diseases">
@@ -247,7 +244,7 @@
start with '-' are a subset of a choice above them; you can chose
either the general interaction type or a more specific one.
-Home page: http://ctd.mdibl.org/
+Home page: http://ctdbase.org
.. _tabular: ./static/formatHelp.html#tab
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/ccbee8d11a6a/
changeset: ccbee8d11a6a
user: jgoecks
date: 2011-11-18 19:56:19
summary: Do not use route memory when creating URLs to metadata files.
affected #: 1 file
diff -r 689aa9c246fed392b4eccbf6642d4871a7cf612f -r ccbee8d11a6a75b8cee78cc9647a31e0dc32894c templates/root/history_common.mako
--- a/templates/root/history_common.mako
+++ b/templates/root/history_common.mako
@@ -13,7 +13,7 @@
to_ext=data.ext )}">Download Dataset</a><a>Additional Files</a>
%for file_type in meta_files:
- <a class="action-button" href="${h.url_for( controller='dataset', action='get_metadata_file', \
+ <a class="action-button" href="${h.url_for( controller='/dataset', action='get_metadata_file', \
hda_id=dataset_id, metadata_name=file_type )}">Download ${file_type}</a>
%endfor
</div>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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