galaxy-commits May 2015

galaxy-commits@lists.galaxyproject.org

2 participants
53 discussions

[galaxyproject/usegalaxy-playbook] 123d9d: Additional fixes for moving to bl2
by GitHub 19 May '15

19 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 123d9d1a62c28218a4559fe5d7b90a6b2a1d2eab https://github.com/galaxyproject/usegalaxy-playbook/commit/123d9d1a62c28218… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-18 (Mon, 18 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/dynamic_rules/blacklight_select.py M stage/host_vars/tg-login2.blacklight.psc.xsede.org.yml Log Message: ----------- Additional fixes for moving to bl2

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[galaxyproject/usegalaxy-playbook] 0d8b01: update mutable confs on production
by GitHub 19 May '15

19 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 0d8b015c97b6e0a4fec8d74b3272c679d62a161c https://github.com/galaxyproject/usegalaxy-playbook/commit/0d8b015c97b6e0a4… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-05-18 (Mon, 18 May 2015) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M files/galaxy/usegalaxy.org/var/shed_tool_conf.xml M files/galaxy/usegalaxy.org/var/shed_tool_data_table_conf.xml Log Message: ----------- update mutable confs on production

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[galaxyproject/usegalaxy-playbook] 4f989f: Switch Blacklight jobs to bl2.
by GitHub 19 May '15

19 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 4f989fab515b0a2af8c0e384b5cda7a897a2784e https://github.com/galaxyproject/usegalaxy-playbook/commit/4f989fab515b0a2a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-18 (Mon, 18 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/dynamic_rules/blacklight_select.py M stage/host_vars/tg-login2.blacklight.psc.xsede.org.yml M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Switch Blacklight jobs to bl2.

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[galaxyproject/usegalaxy-playbook] 878d6a: galaxyproject.org -> athena
by GitHub 18 May '15

18 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 878d6a0f4786e028b8d23836a04ddd0457890e33 https://github.com/galaxyproject/usegalaxy-playbook/commit/878d6a0f4786e028… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-18 (Mon, 18 May 2015) Changed paths: M common/host_vars/athena.galaxyproject.org.yml A templates/nginx/galaxyproject.j2 Log Message: ----------- galaxyproject.org -> athena

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[galaxyproject/usegalaxy-playbook] 1afe68: Grant Enis access to ubuntu@sites1
by GitHub 18 May '15

18 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1afe68a90c997006a2f007038be150f37fd2323d https://github.com/galaxyproject/usegalaxy-playbook/commit/1afe68a90c997006… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-16 (Sat, 16 May 2015) Changed paths: M common/host_vars/sites1.yml Log Message: ----------- Grant Enis access to ubuntu@sites1 Commit: cd866505d4f68af67854b257749032ee2f55a167 https://github.com/galaxyproject/usegalaxy-playbook/commit/cd866505d4f68af6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-18 (Mon, 18 May 2015) Changed paths: A common/host_vars/athena.galaxyproject.org.yml R common/host_vars/sites1.yml M common/inventory M common/secret_vars/ssl.yml A files/ssl/athena.galaxyproject.org_cert.pem A files/ssl/wildcard_cert.pem A templates/nginx/cloudlaunch.j2 Log Message: ----------- Add athena, configs for cloudlaunch Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/8dbaf4fcebd8...…

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[galaxyproject/usegalaxy-playbook] 8dbaf4: update mutable confs on Stage
by GitHub 16 May '15

16 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 8dbaf4fcebd802bbe27dd2a6ef564075c4cdedf1 https://github.com/galaxyproject/usegalaxy-playbook/commit/8dbaf4fcebd802bb… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-05-15 (Fri, 15 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml Log Message: ----------- update mutable confs on Stage

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commit/galaxy-central: 3 new changesets
by commits-noreply＠bitbucket.org 16 May '15

16 May '15

3 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/b7c2f4457ace/ Changeset: b7c2f4457ace Branch: release_15.05 User: natefoo Date: 2015-05-15 19:21:08+00:00 Summary: Fix tags for 15.05 release. Affected #: 1 file diff -r c3cef260df887330c6da902caf8a5f068b9d29b4 -r b7c2f4457acef8bf0478170983787a2ea42eccff .hgtags --- a/.hgtags +++ b/.hgtags @@ -27,5 +27,5 @@ 9f40ff3e3fe1f7fed7e055d4269fe83199cf5ed2 v15.03.1 bfd4635011e39aa210b2b1498dd65831dd2a365e v15.03.2 bfd4635011e39aa210b2b1498dd65831dd2a365e latest_15.03 -31c076123a8fa32b2b6a51eb859e4cac90043333 v15.05 -31c076123a8fa32b2b6a51eb859e4cac90043333 latest_15.05 +c3cef260df887330c6da902caf8a5f068b9d29b4 v15.05 +c3cef260df887330c6da902caf8a5f068b9d29b4 latest_15.05 https://bitbucket.org/galaxy/galaxy-central/commits/46a4ef8850b5/ Changeset: 46a4ef8850b5 Branch: stable User: natefoo Date: 2015-05-15 19:21:24+00:00 Summary: Merge release_15.05 to stable Affected #: 3 files diff -r ae85e9661ccd635a08ab9e224a43fd9333fdd5c5 -r 46a4ef8850b5852390f0bf86869d889a30dffbe9 .hgtags --- a/.hgtags +++ b/.hgtags @@ -27,5 +27,5 @@ 9f40ff3e3fe1f7fed7e055d4269fe83199cf5ed2 v15.03.1 bfd4635011e39aa210b2b1498dd65831dd2a365e v15.03.2 bfd4635011e39aa210b2b1498dd65831dd2a365e latest_15.03 -31c076123a8fa32b2b6a51eb859e4cac90043333 v15.05 -31c076123a8fa32b2b6a51eb859e4cac90043333 latest_15.05 +c3cef260df887330c6da902caf8a5f068b9d29b4 v15.05 +c3cef260df887330c6da902caf8a5f068b9d29b4 latest_15.05 diff -r ae85e9661ccd635a08ab9e224a43fd9333fdd5c5 -r 46a4ef8850b5852390f0bf86869d889a30dffbe9 config/auth_conf.xml.sample --- /dev/null +++ b/config/auth_conf.xml.sample @@ -0,0 +1,39 @@ +<?xml version="1.0"?> +<auth> + +  + +  + +  + +  + + + <authenticator> + <type>localdb</type> + <options> + <allow-password-change>true</allow-password-change> + </options> + </authenticator> +</auth> diff -r ae85e9661ccd635a08ab9e224a43fd9333fdd5c5 -r 46a4ef8850b5852390f0bf86869d889a30dffbe9 config/plugins/visualizations/common/templates/script_entry_point.mako --- /dev/null +++ b/config/plugins/visualizations/common/templates/script_entry_point.mako @@ -0,0 +1,10 @@ +# -*- coding: utf-8 -*- +<%inherit file="visualization_base.mako"/> + +## No stylesheets +<%def name="stylesheets()"></%def> +## No javascript libraries +<%def name="late_javascripts()"> + <% tag_attrs = ' '.join([ '{0}="{1}"'.format( key, attr ) for key, attr in script_tag_attributes.items() ]) %> + <script type="text/javascript" ${tag_attrs}></script> +</%def> https://bitbucket.org/galaxy/galaxy-central/commits/e837a68e8d14/ Changeset: e837a68e8d14 User: natefoo Date: 2015-05-15 19:21:34+00:00 Summary: Merge stable to default Affected #: 3 files diff -r 7a4e3a661a76fa8f150c11f26c2bb52b2faa0046 -r e837a68e8d149bb185d631b27e049f3edeb641d3 .hgtags --- a/.hgtags +++ b/.hgtags @@ -27,5 +27,5 @@ 9f40ff3e3fe1f7fed7e055d4269fe83199cf5ed2 v15.03.1 bfd4635011e39aa210b2b1498dd65831dd2a365e v15.03.2 bfd4635011e39aa210b2b1498dd65831dd2a365e latest_15.03 -31c076123a8fa32b2b6a51eb859e4cac90043333 v15.05 -31c076123a8fa32b2b6a51eb859e4cac90043333 latest_15.05 +c3cef260df887330c6da902caf8a5f068b9d29b4 v15.05 +c3cef260df887330c6da902caf8a5f068b9d29b4 latest_15.05 diff -r 7a4e3a661a76fa8f150c11f26c2bb52b2faa0046 -r e837a68e8d149bb185d631b27e049f3edeb641d3 config/auth_conf.xml.sample --- /dev/null +++ b/config/auth_conf.xml.sample @@ -0,0 +1,39 @@ +<?xml version="1.0"?> +<auth> + +  + +  + +  + +  + + + <authenticator> + <type>localdb</type> + <options> + <allow-password-change>true</allow-password-change> + </options> + </authenticator> +</auth> diff -r 7a4e3a661a76fa8f150c11f26c2bb52b2faa0046 -r e837a68e8d149bb185d631b27e049f3edeb641d3 config/plugins/visualizations/common/templates/script_entry_point.mako --- /dev/null +++ b/config/plugins/visualizations/common/templates/script_entry_point.mako @@ -0,0 +1,10 @@ +# -*- coding: utf-8 -*- +<%inherit file="visualization_base.mako"/> + +## No stylesheets +<%def name="stylesheets()"></%def> +## No javascript libraries +<%def name="late_javascripts()"> + <% tag_attrs = ' '.join([ '{0}="{1}"'.format( key, attr ) for key, attr in script_tag_attributes.items() ]) %> + <script type="text/javascript" ${tag_attrs}></script> +</%def> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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commit/galaxy-central: natefoo: Add missing files excluded by .hgignore.
by commits-noreply＠bitbucket.org 16 May '15

16 May '15

1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/c3cef260df88/ Changeset: c3cef260df88 Branch: release_15.05 User: natefoo Date: 2015-05-15 19:20:17+00:00 Summary: Add missing files excluded by .hgignore. Affected #: 2 files diff -r f23c513e451c2777c9cefafcf23956499a084e26 -r c3cef260df887330c6da902caf8a5f068b9d29b4 config/auth_conf.xml.sample --- /dev/null +++ b/config/auth_conf.xml.sample @@ -0,0 +1,39 @@ +<?xml version="1.0"?> +<auth> + +  + +  + +  + +  + + + <authenticator> + <type>localdb</type> + <options> + <allow-password-change>true</allow-password-change> + </options> + </authenticator> +</auth> diff -r f23c513e451c2777c9cefafcf23956499a084e26 -r c3cef260df887330c6da902caf8a5f068b9d29b4 config/plugins/visualizations/common/templates/script_entry_point.mako --- /dev/null +++ b/config/plugins/visualizations/common/templates/script_entry_point.mako @@ -0,0 +1,10 @@ +# -*- coding: utf-8 -*- +<%inherit file="visualization_base.mako"/> + +## No stylesheets +<%def name="stylesheets()"></%def> +## No javascript libraries +<%def name="late_javascripts()"> + <% tag_attrs = ' '.join([ '{0}="{1}"'.format( key, attr ) for key, attr in script_tag_attributes.items() ]) %> + <script type="text/javascript" ${tag_attrs}></script> +</%def> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.

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[galaxyproject/usegalaxy-playbook] 54aa70: Add a new EC2 instance for cloudlaunch and other s...
by GitHub 15 May '15

15 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 54aa70883002a0042939bae8c43cddfbe24f6f62 https://github.com/galaxyproject/usegalaxy-playbook/commit/54aa70883002a004… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-15 (Fri, 15 May 2015) Changed paths: A common/host_vars/sites1.yml M common/inventory A ec2.yml Log Message: ----------- Add a new EC2 instance for cloudlaunch and other sites. Commit: bfb9ef0f57f7aaa84426aaff18a8ccd55f75ee92 https://github.com/galaxyproject/usegalaxy-playbook/commit/bfb9ef0f57f7aaa8… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-15 (Fri, 15 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_data_table_conf.xml M stage/group_vars/all.yml M stage/group_vars/galaxyservers.yml Log Message: ----------- Merge branch 'master' of ssh://github.com/galaxyproject/usegalaxy-playbook Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/ed0cc99699f9...…

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[galaxyproject/usegalaxy-playbook] ed0cc9: update mutable confs; remove Test from menu for sc...
by GitHub 15 May '15

15 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: ed0cc99699f93097f03b940b9a80b95aab37cf71 https://github.com/galaxyproject/usegalaxy-playbook/commit/ed0cc99699f93097… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-05-15 (Fri, 15 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_data_table_conf.xml M stage/group_vars/galaxyservers.yml Log Message: ----------- update mutable confs; remove Test from menu for screencast purposes

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galaxy-commits May 2015