May 2015 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] 0c2858: Update Pulsar
by GitHub 06 May '15

06 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 0c2858c5dcc2a203da560112302096eefe6aa836 https://github.com/galaxyproject/usegalaxy-playbook/commit/0c2858c5dcc2a203… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-06 (Wed, 06 May 2015) Changed paths: M production/group_vars/pulsarservers.yml M stage/group_vars/pulsarservers.yml Log Message: ----------- Update Pulsar

1 0

[galaxyproject/usegalaxy-playbook] 28bdd6: update MTS, enable sentry
by GitHub 06 May '15

06 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 28bdd6d4314c90f59332e1d847c842875bf960e5 https://github.com/galaxyproject/usegalaxy-playbook/commit/28bdd6d4314c90f5… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-05-06 (Wed, 06 May 2015) Changed paths: M production/group_vars/toolshedservers.yml Log Message: ----------- update MTS, enable sentry

1 0

[galaxyproject/usegalaxy-playbook] 02483b: update TTS
by GitHub 06 May '15

06 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 02483b37f869a92b4eb21c2dac839689372e1081 https://github.com/galaxyproject/usegalaxy-playbook/commit/02483b37f869a92b… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-05-06 (Wed, 06 May 2015) Changed paths: M stage/group_vars/toolshedservers.yml Log Message: ----------- update TTS

1 0

[galaxyproject/usegalaxy-playbook] 65b219: Mutable configs
by GitHub 06 May '15

06 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 65b219a203ed2ff472a28e5ed1a36855c8a97cd2 https://github.com/galaxyproject/usegalaxy-playbook/commit/65b219a203ed2ff4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-06 (Wed, 06 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_data_manager_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_data_table_conf.xml Log Message: ----------- Mutable configs Commit: 0833888e305616865b968c1d984a21cdba4cf1f5 https://github.com/galaxyproject/usegalaxy-playbook/commit/0833888e30561686… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-06 (Wed, 06 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/config/pulsar_stampede_actions.yml M files/galaxy/usegalaxy.org/config/pulsar_stampede_actions.yml Log Message: ----------- Don't stage ref.fai as used by cufflinks, this is a hack until job working directories are cleaned prior to resubmission. Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/ddcb44e2f4bb...…

1 0

[galaxyproject/usegalaxy-playbook] ee3bf0: Add destination for kraken.
by GitHub 06 May '15

06 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: ee3bf0febd95b2ecd2a3d284798e9510efa7a5ec https://github.com/galaxyproject/usegalaxy-playbook/commit/ee3bf0febd95b2ec… Author: Dave B. <dave(a)bx.psu.edu> Date: 2015-05-06 (Wed, 06 May 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Add destination for kraken. Commit: ddcb44e2f4bba0b064ecb2624cde2b585108b291 https://github.com/galaxyproject/usegalaxy-playbook/commit/ddcb44e2f4bba0b0… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-06 (Wed, 06 May 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Merge pull request #3 from davebx/slurm_multi_highmem Add destination for kraken. Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/029d714a41a6...…

1 0

[galaxyproject/usegalaxy-playbook] 029d71: Add missing dynamic stampede select destination.
by GitHub 05 May '15

05 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 029d714a41a6e2fbcb049419d901b5c79b159184 https://github.com/galaxyproject/usegalaxy-playbook/commit/029d714a41a6e2fb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-05 (Tue, 05 May 2015) Changed paths: M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Add missing dynamic stampede select destination.

1 0

[galaxyproject/usegalaxy-playbook] 3e69f8: Update Pulsar
by GitHub 05 May '15

05 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 3e69f8f00e70debb72029575abab2684ac9df14d https://github.com/galaxyproject/usegalaxy-playbook/commit/3e69f8f00e70debb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-05 (Tue, 05 May 2015) Changed paths: M production/group_vars/pulsarservers.yml M stage/group_vars/pulsarservers.yml Log Message: ----------- Update Pulsar

1 0

[galaxyproject/usegalaxy-playbook] fddf32: Mutable configs
by GitHub 05 May '15

05 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: fddf32f32811ad5d63e6de8b55b1f6b08039cc9f https://github.com/galaxyproject/usegalaxy-playbook/commit/fddf32f32811ad5d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-05 (Tue, 05 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml Log Message: ----------- Mutable configs Commit: 0516b2c7f399fa3d8daa3573e95ff0378860f837 https://github.com/galaxyproject/usegalaxy-playbook/commit/0516b2c7f399fa3d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-05 (Tue, 05 May 2015) Changed paths: M production/group_vars/pulsarservers.yml M stage/group_vars/pulsarservers.yml M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Move Pulsar staging dir to Stampede's /scratch filesystem due to quota on /work (and that's what /scratch is for anyway). Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/6fc059990c68...…

1 0

[galaxyproject/usegalaxy-playbook] 03edc6: Same as the last commit but for Main.
by GitHub 04 May '15

04 May '15

1 0

[galaxyproject/usegalaxy-playbook] 474292: 1. Don't set metadata remotely for nagios jobs on ...
by GitHub 01 May '15

01 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 4742927e590abae520ced4660e42a107865b8289 https://github.com/galaxyproject/usegalaxy-playbook/commit/4742927e590abae5… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-01 (Fri, 01 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/config/nagios_tool_conf.xml M files/galaxy/test.galaxyproject.org/nagios/echo_test_blacklight.xml A files/galaxy/test.galaxyproject.org/nagios/echo_test_cluster.xml M files/galaxy/test.galaxyproject.org/nagios/echo_test_handler0.xml M files/galaxy/test.galaxyproject.org/nagios/echo_test_handler1.xml M files/galaxy/test.galaxyproject.org/nagios/echo_test_stampede.xml M stage/group_vars/galaxyservers.yml M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- 1. Don't set metadata remotely for nagios jobs on Pulsar servers 2. Only submit 1 job for testing the cluster instead of 1 per handler. Test handlers individually using the local runner.

1 0