May 2015 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] 6eaf76: update prod mutable confs (hide sam_merge)
by GitHub 12 May '15

12 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 6eaf767df8f319496b2f8b2dee41eff93a6e7333 https://github.com/galaxyproject/usegalaxy-playbook/commit/6eaf767df8f31949… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-05-12 (Tue, 12 May 2015) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M files/galaxy/usegalaxy.org/var/migrated_tools_conf.xml Log Message: ----------- update prod mutable confs (hide sam_merge)

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[galaxyproject/usegalaxy-playbook] 2c1d5b: Update Test and Main
by GitHub 12 May '15

12 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 2c1d5b6893aa0dd1d00cd27a5c24e367f346e12c https://github.com/galaxyproject/usegalaxy-playbook/commit/2c1d5b6893aa0dd1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-12 (Tue, 12 May 2015) Changed paths: M production/group_vars/all.yml M stage/group_vars/all.yml Log Message: ----------- Update Test and Main

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[galaxyproject/usegalaxy-playbook] 2f30a7: update prod integrated conf
by GitHub 11 May '15

11 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 2f30a780d9bd107e31677fe7633fa3b6e88ff5d8 https://github.com/galaxyproject/usegalaxy-playbook/commit/2f30a780d9bd107e… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-05-11 (Mon, 11 May 2015) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml Log Message: ----------- update prod integrated conf move samtools section up form beta section and rename

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[galaxyproject/usegalaxy-playbook] d552eb: update prod mutable configs after samtools 1.2 ins...
by GitHub 11 May '15

11 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: d552eb56ebc171fd86e6781f1658262f3d7b4cd9 https://github.com/galaxyproject/usegalaxy-playbook/commit/d552eb56ebc171fd… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-05-11 (Mon, 11 May 2015) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M files/galaxy/usegalaxy.org/var/shed_data_manager_conf.xml M files/galaxy/usegalaxy.org/var/shed_tool_conf.xml M files/galaxy/usegalaxy.org/var/shed_tool_data_table_conf.xml Log Message: ----------- update prod mutable configs after samtools 1.2 installation

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[galaxyproject/usegalaxy-playbook] 61ec7e: update prod mutable confs
by GitHub 11 May '15

11 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 61ec7ea2421984ae78c29fc6515a47b66c344d69 https://github.com/galaxyproject/usegalaxy-playbook/commit/61ec7ea2421984ae… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-05-11 (Mon, 11 May 2015) Changed paths: M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M files/galaxy/usegalaxy.org/var/shed_tool_conf.xml M files/galaxy/usegalaxy.org/var/shed_tool_data_table_conf.xml Log Message: ----------- update prod mutable confs

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[galaxyproject/usegalaxy-playbook] 33423b: Increase Blacklight limits
by GitHub 11 May '15

11 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 33423b2892b85ad26a47dc2c8a111de81ec7073c https://github.com/galaxyproject/usegalaxy-playbook/commit/33423b2892b85ad2… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-11 (Mon, 11 May 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Increase Blacklight limits

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[galaxyproject/usegalaxy-playbook] 90b594: Fix Pulsar staging dir on Blacklight
by GitHub 11 May '15

11 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 90b594b528134c302c6b821f8e2c4a411b3a911f https://github.com/galaxyproject/usegalaxy-playbook/commit/90b594b528134c30… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-11 (Mon, 11 May 2015) Changed paths: M stage/group_vars/pulsarservers.yml M stage/host_vars/login5.stampede.tacc.utexas.edu.yml M stage/host_vars/tg-login2.blacklight.psc.xsede.org.yml Log Message: ----------- Fix Pulsar staging dir on Blacklight

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[galaxyproject/usegalaxy-playbook] 15eaad: Pulsar and Galaxy updates from last week that I ap...
by GitHub 11 May '15

11 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 15eaadf63093a98e53a644b79b544f10ff5c6d1f https://github.com/galaxyproject/usegalaxy-playbook/commit/15eaadf63093a98e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-11 (Mon, 11 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/config/pulsar_stampede_actions.yml M files/galaxy/usegalaxy.org/config/pulsar_stampede_actions.yml M production/group_vars/all.yml M production/group_vars/pulsarservers.yml M stage/group_vars/all.yml M stage/group_vars/pulsarservers.yml Log Message: ----------- Pulsar and Galaxy updates from last week that I apparently forgot to commit.

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[galaxyproject/usegalaxy-playbook] 9937cf: Update Pulsar again due to facepalm.
by GitHub 06 May '15

06 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 9937cfa38cef566b743ccf14a3cd48e99a77a43b https://github.com/galaxyproject/usegalaxy-playbook/commit/9937cfa38cef566b… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-06 (Wed, 06 May 2015) Changed paths: M production/group_vars/pulsarservers.yml M stage/group_vars/pulsarservers.yml Log Message: ----------- Update Pulsar again due to facepalm.

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[galaxyproject/usegalaxy-playbook] f4c560: Don't stage in tohat_out for resubmit jobs either
by GitHub 06 May '15

06 May '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: f4c56005cfbb9416bc47e8ff84733f80d28aaa1c https://github.com/galaxyproject/usegalaxy-playbook/commit/f4c56005cfbb9416… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-05-06 (Wed, 06 May 2015) Changed paths: M files/galaxy/test.galaxyproject.org/config/pulsar_stampede_actions.yml M files/galaxy/usegalaxy.org/config/pulsar_stampede_actions.yml Log Message: ----------- Don't stage in tohat_out for resubmit jobs either

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