galaxy-commits April 2016

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[galaxyproject/usegalaxy-playbook] a9283c: adjust tool panel search config
by GitHub 29 Apr '16

29 Apr '16

Branch: refs/heads/adjust-panel-search Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: a9283c31557a56bc640160f271f46708303917e9 https://github.com/galaxyproject/usegalaxy-playbook/commit/a9283c31557a56bc… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-04-29 (Fri, 29 Apr 2016) Changed paths: M production/group_vars/galaxyservers.yml Log Message: ----------- adjust tool panel search config we need more results with more weight on name and section

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[galaxyproject/galaxy] 9ba510: This is a preliminary fix for displaying raw text/...
by GitHub 28 Apr '16

28 Apr '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 9ba510d68675ca7bb2ea036bbffeb82cd725f0fc https://github.com/galaxyproject/galaxy/commit/9ba510d68675ca7bb2ea036bbffe… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- This is a preliminary fix for displaying raw text/html unicodify'd data (html reports, etc). TODO: Push this logic up into the framework so inside the webapp it's all unicode all the time. Commit: 8b6729e8535c4221da4c979652a389e7d6258fc2 https://github.com/galaxyproject/galaxy/commit/8b6729e8535c4221da4c979652a3… Author: Nitesh Turaga <nitesh.turaga(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Merge pull request #2266 from dannon/cherrypick_display_encoding [16.04] Cherrypick of encoding fix Commit: 9ac50faee3ec2cc938f5eb279a3b62a762661101 https://github.com/galaxyproject/galaxy/commit/9ac50faee3ec2cc938f5eb279a3b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Log Message: ----------- Merge branch 'release_16.04' into dev Compare: https://github.com/galaxyproject/galaxy/compare/a46ee8eaef28...9ac50faee3ec

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[galaxyproject/galaxy]
by GitHub 28 Apr '16

28 Apr '16

Branch: refs/heads/ts_printdebug Home: https://github.com/galaxyproject/galaxy

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[galaxyproject/galaxy] 573887: Add default for print debug in the sample .ini
by GitHub 28 Apr '16

28 Apr '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5738870d86fde8f1a11280fcff9e8bf7fc7ca47e https://github.com/galaxyproject/galaxy/commit/5738870d86fde8f1a11280fcff9e… Author: Dave B <dave(a)bx.psu.edu> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M config/tool_shed.ini.sample Log Message: ----------- Add default for print debug in the sample .ini Commit: be6313f426e33f38b62d301913486605da60f1de https://github.com/galaxyproject/galaxy/commit/be6313f426e33f38b62d30191348… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M config/reports.ini.sample M config/tool_shed.ini.sample Log Message: ----------- remove unused config options; turn debug off for TS; other minor changes Commit: a46ee8eaef2877ce36e987c26361f6baf30055d8 https://github.com/galaxyproject/galaxy/commit/a46ee8eaef2877ce36e987c26361… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M config/reports.ini.sample M config/tool_shed.ini.sample Log Message: ----------- Merge pull request #2267 from galaxyproject/ts_printdebug cleanup TS and Reports configs Compare: https://github.com/galaxyproject/galaxy/compare/789b86f94bea...a46ee8eaef28

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[galaxyproject/galaxy] 07fc59: Correctly use defaults specified in galaxy.ini.sam...
by GitHub 28 Apr '16

28 Apr '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 07fc59147f5d8bb047153ca9298b1319c89a4912 https://github.com/galaxyproject/galaxy/commit/07fc59147f5d8bb047153ca9298b… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Correctly use defaults specified in galaxy.ini.sample for statsd. Commit: 789b86f94bead9f655afce09bb6b214109a3b976 https://github.com/galaxyproject/galaxy/commit/789b86f94bead9f655afce09bb6b… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- Merge pull request #2268 from dannon/statsd_defaults_fix Correctly use defaults specified in galaxy.ini.sample for statsd. Compare: https://github.com/galaxyproject/galaxy/compare/bf0491f17acb...789b86f94bea

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[galaxyproject/galaxy] be6313: remove unused config options; turn debug off for T...
by GitHub 28 Apr '16

28 Apr '16

Branch: refs/heads/ts_printdebug Home: https://github.com/galaxyproject/galaxy Commit: be6313f426e33f38b62d301913486605da60f1de https://github.com/galaxyproject/galaxy/commit/be6313f426e33f38b62d30191348… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M config/reports.ini.sample M config/tool_shed.ini.sample Log Message: ----------- remove unused config options; turn debug off for TS; other minor changes

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[galaxyproject/galaxy] 573887: Add default for print debug in the sample .ini
by GitHub 28 Apr '16

28 Apr '16

Branch: refs/heads/ts_printdebug Home: https://github.com/galaxyproject/galaxy Commit: 5738870d86fde8f1a11280fcff9e8bf7fc7ca47e https://github.com/galaxyproject/galaxy/commit/5738870d86fde8f1a11280fcff9e… Author: Dave B <dave(a)bx.psu.edu> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M config/tool_shed.ini.sample Log Message: ----------- Add default for print debug in the sample .ini

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[galaxyproject/galaxy] 9ba510: This is a preliminary fix for displaying raw text/...
by GitHub 28 Apr '16

28 Apr '16

Branch: refs/heads/release_16.04 Home: https://github.com/galaxyproject/galaxy Commit: 9ba510d68675ca7bb2ea036bbffeb82cd725f0fc https://github.com/galaxyproject/galaxy/commit/9ba510d68675ca7bb2ea036bbffe… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- This is a preliminary fix for displaying raw text/html unicodify'd data (html reports, etc). TODO: Push this logic up into the framework so inside the webapp it's all unicode all the time. Commit: 8b6729e8535c4221da4c979652a389e7d6258fc2 https://github.com/galaxyproject/galaxy/commit/8b6729e8535c4221da4c979652a3… Author: Nitesh Turaga <nitesh.turaga(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Merge pull request #2266 from dannon/cherrypick_display_encoding [16.04] Cherrypick of encoding fix Compare: https://github.com/galaxyproject/galaxy/compare/ce31431f2949...8b6729e8535c

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[galaxyproject/galaxy] 5175ef: This is a preliminary fix for displaying raw text/...
by GitHub 28 Apr '16

28 Apr '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5175efd47dcaa229f2d6ae03d240fb5430ce1dea https://github.com/galaxyproject/galaxy/commit/5175efd47dcaa229f2d6ae03d240… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- This is a preliminary fix for displaying raw text/html unicodify'd data (html reports, etc). TODO: Push this logic up into the framework so inside the webapp it's all unicode all the time. Commit: bf0491f17acb5149b21799702e45d044cfb7e89f https://github.com/galaxyproject/galaxy/commit/bf0491f17acb5149b21799702e45… Author: Nitesh Turaga <nitesh.turaga(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M lib/galaxy/datatypes/data.py Log Message: ----------- Merge pull request #2263 from dannon/encode_raw_html_output Preliminary fix for displaying raw text/html Compare: https://github.com/galaxyproject/galaxy/compare/f7d748395252...bf0491f17acb

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[galaxyproject/galaxy] 1d7ddc: fixed ui bugs in tours
by GitHub 28 Apr '16

28 Apr '16

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 1d7ddc3c2ba9dcb17a523f87169e66f510078009 https://github.com/galaxyproject/galaxy/commit/1d7ddc3c2ba9dcb17a523f87169e… Author: Thomas Wollmann <thomas.wollmann(a)bioquant.uni-heidelberg.de> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M config/plugins/tours/core.galaxy_ui.yaml M config/plugins/tours/core.scratchbook.yaml Log Message: ----------- fixed ui bugs in tours Commit: f7d748395252dbfcb128a5fdbe986ce4b3084616 https://github.com/galaxyproject/galaxy/commit/f7d748395252dbfcb128a5fdbe98… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2016-04-28 (Thu, 28 Apr 2016) Changed paths: M config/plugins/tours/core.galaxy_ui.yaml M config/plugins/tours/core.scratchbook.yaml Log Message: ----------- Merge pull request #2262 from ThomasWollmann/dev fixed ui bugs in tours Compare: https://github.com/galaxyproject/galaxy/compare/9242847a4f5d...f7d748395252

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galaxy-commits April 2016