Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: a60f5f6a89bc8139d2f72534f6819bcbcb9cfcc4
https://github.com/galaxyproject/galaxy/commit/a60f5f6a89bc8139d2f72534f681…
Author: Sergey Golitsynskiy <sgolitsynskiy(a)gmail.com>
Date: 2018-10-10 (Wed, 10 Oct 2018)
Changed paths:
M client/galaxy/docs/bootstrap.md
M client/galaxy/docs/galaxy-buttons.md
M client/galaxy/docs/galaxy-forms.md
M client/galaxy/docs/galaxy-masthead.md
M client/galaxy/docs/galaxy-menus.md
M client/galaxy/docs/galaxy-messages.md
M client/galaxy/docs/galaxy-panels.md
M client/galaxy/docs/galaxy-tables.md
M client/galaxy/docs/galaxy-tabs.md
Log Message:
-----------
Indicate language in client docs to enable syntax highlighting.
Enables syntax highlighting for code blocks in .md files.
Commit: 39654146723109d11b33f24c93581feeb36327db
https://github.com/galaxyproject/galaxy/commit/39654146723109d11b33f24c9358…
Author: Sergey Golitsynskiy <sgolitsynskiy(a)gmail.com>
Date: 2018-10-11 (Thu, 11 Oct 2018)
Changed paths:
M client/README.md
A client/galaxy/docs/README.md
M client/galaxy/docs/bootstrap.md
M client/galaxy/docs/galaxy-buttons.md
M client/galaxy/docs/galaxy-forms.md
M client/galaxy/docs/galaxy-masthead.md
M client/galaxy/docs/galaxy-menus.md
M client/galaxy/docs/galaxy-messages.md
M client/galaxy/docs/galaxy-panels.md
M client/galaxy/docs/galaxy-tables.md
M client/galaxy/docs/galaxy-tabs.md
Log Message:
-----------
Minor updates to client dir: indicate language, add/update readme.
1. Add 'vue' as language to .md files in client/galaxy/docs.
2. Add README.md to docs directory.
3. Update main client README.md (LESS >> Sass).
Commit: fb0f792f8d50e81b3a2c8b6b9ff49252377c5114
https://github.com/galaxyproject/galaxy/commit/fb0f792f8d50e81b3a2c8b6b9ff4…
Author: Dannon <dannon.baker(a)gmail.com>
Date: 2018-10-16 (Tue, 16 Oct 2018)
Changed paths:
M client/README.md
A client/galaxy/docs/README.md
M client/galaxy/docs/bootstrap.md
M client/galaxy/docs/galaxy-buttons.md
M client/galaxy/docs/galaxy-forms.md
M client/galaxy/docs/galaxy-masthead.md
M client/galaxy/docs/galaxy-menus.md
M client/galaxy/docs/galaxy-messages.md
M client/galaxy/docs/galaxy-panels.md
M client/galaxy/docs/galaxy-tables.md
M client/galaxy/docs/galaxy-tabs.md
Log Message:
-----------
Merge pull request #6848 from ic4f/dev
Indicate language in client docs to enable syntax highlighting.
Compare: https://github.com/galaxyproject/galaxy/compare/1e09f234e77c...fb0f792f8d50
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: 8edb7499c8d336d727fa751a2097d0356cf5bcbe
https://github.com/galaxyproject/galaxy/commit/8edb7499c8d336d727fa751a2097…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-10-13 (Sat, 13 Oct 2018)
Changed paths:
M lib/galaxy/datatypes/binary.py
Log Message:
-----------
Keep xlsx files compressed
Fixes https://github.com/galaxyproject/galaxy/issues/6849
Commit: 0c7cc50e73827ac65eabf10400c90a644a15f10b
https://github.com/galaxyproject/galaxy/commit/0c7cc50e73827ac65eabf10400c9…
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-10-13 (Sat, 13 Oct 2018)
Changed paths:
M lib/galaxy/datatypes/upload_util.py
Log Message:
-----------
Only warn about multi-file zips if we don't keep the compressed archive
Commit: 03073ed1249d2403994013d9f4486f85d7a23e80
https://github.com/galaxyproject/galaxy/commit/03073ed1249d2403994013d9f448…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M lib/galaxy/datatypes/binary.py
M lib/galaxy/datatypes/upload_util.py
Log Message:
-----------
Merge pull request #6867 from mvdbeek/fix_xlsx_unpacking
[18.09] Keep xlsx files compressed
Commit: b9a01761b03e4ad4c06e86a1250c2f33e62ae0be
https://github.com/galaxyproject/galaxy/commit/b9a01761b03e4ad4c06e86a1250c…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M lib/tool_shed/util/hg_util.py
Log Message:
-----------
Do not traceback when uploading a TS repo with no changes
Fix the following traceback when executing `planemo shed_update`:
```
galaxy.web.framework.decorators ERROR 2018-10-15 18:07:38,736 [p:30249,w:1,m:0] [uWSGIWorker1Core1] Uncaught exception in exposed API method:
Traceback (most recent call last):
File "lib/galaxy/web/framework/decorators.py", line 154, in decorator
rval = func(self, trans, *args, **kwargs)
File "lib/galaxy/webapps/tool_shed/api/repositories.py", line 1116, in create_changeset_revision
new_repo_alert
File "lib/tool_shed/util/repository_content_util.py", line 64, in upload_tar
undesirable_files_removed)
File "lib/tool_shed/util/commit_util.py", line 225, in handle_directory_changes
message=commit_message)
File "lib/tool_shed/util/hg_util.py", line 65, in commit_changeset
raise Exception(error_message)
Exception: Error committing '/opt/galaxy/database/community_files/000/repo_1' to repository: Command '['hg', 'commit', '-u', u'earlhaminst', '-m', u'planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/TreeBest commit 22231ebc4e5e990c61243a3609b3347cf63fa024', '/opt/galaxy/database/community_files/000/repo_1']' returned non-zero exit status 1
Output was:
nothing changed
127.0.0.1 - - [15/Oct/2018:18:07:38 +0100] "POST /api/repositories/adb5f5c93f827949/changeset_revision HTTP/1.1" 500 - "-" "python-requests/2.18.4"
```
Commit: d4e2f6d59e15bc06b35824201be30e95209596fb
https://github.com/galaxyproject/galaxy/commit/d4e2f6d59e15bc06b35824201be3…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M lib/tool_shed/util/hg_util.py
Log Message:
-----------
Merge pull request #6875 from nsoranzo/release_18.09_fix_commit_changeset
[18.09] Do not traceback when uploading a TS repo with no changes
Commit: d144523f7c29ae03e48045fd1cff47b0efc50305
https://github.com/galaxyproject/galaxy/commit/d144523f7c29ae03e48045fd1cff…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-16 (Tue, 16 Oct 2018)
Changed paths:
M lib/galaxy/datatypes/binary.py
M lib/galaxy/datatypes/upload_util.py
M lib/tool_shed/util/hg_util.py
Log Message:
-----------
Merge branch 'release_18.09' into dev
Compare: https://github.com/galaxyproject/galaxy/compare/519b994d40ef...d144523f7c29
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.