Branch: refs/heads/dev
Home: https://github.com/galaxyproject/galaxy
Commit: e9bb9cdfdddf39ebab8907aa06ed12cae0e55b83
https://github.com/galaxyproject/galaxy/commit/e9bb9cdfdddf39ebab8907aa06ed…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-10-13 (Sat, 13 Oct 2018)
Changed paths:
M templates/webapps/galaxy/admin/view_display_applications.mako
Log Message:
-----------
Use card for display applications
Commit: 36604fc92397854b0f68e8c34e2edf2e349a199c
https://github.com/galaxyproject/galaxy/commit/36604fc92397854b0f68e8c34e2e…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-10-13 (Sat, 13 Oct 2018)
Changed paths:
M templates/admin/jobs.mako
Log Message:
-----------
Use card styles for manage jobs in admin panel
Commit: 1ccb5a1f5c4bfc704b9b0464fb81705a1c03505e
https://github.com/galaxyproject/galaxy/commit/1ccb5a1f5c4bfc704b9b0464fb81…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M client/galaxy/style/scss/ui.scss
M static/style/blue/base.css
M templates/admin/review_tool_migration_stages.mako
M templates/webapps/galaxy/admin/manage_dependencies.mako
M templates/webapps/galaxy/admin/view_display_applications.mako
Log Message:
-----------
Fix tool migration stages view
Commit: 59eefbc2a456597840eb15e7dbc5bcc223d73529
https://github.com/galaxyproject/galaxy/commit/59eefbc2a456597840eb15e7dbc5…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M templates/webapps/galaxy/admin/sanitize_whitelist.mako
Log Message:
-----------
Fix tool white listing view
Commit: 1d680087471dee4cfe8573938f0d275db7addaaf
https://github.com/galaxyproject/galaxy/commit/1d680087471dee4cfe8573938f0d…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M templates/admin/tool_shed_repository/monitor_repository_installation.mako
M templates/admin/tool_shed_repository/reset_metadata_on_selected_repositories.mako
M templates/message.mako
Log Message:
-----------
Fix message style and repository monitoring
Commit: 4e3ef50cb202ab43d7fb0ce3f9932f4da1666378
https://github.com/galaxyproject/galaxy/commit/4e3ef50cb202ab43d7fb0ce3f993…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M templates/message.mako
Log Message:
-----------
Fix custom message status
Commit: cf4fca4b6a66488325dbc94edb67784b78ad9bb9
https://github.com/galaxyproject/galaxy/commit/cf4fca4b6a66488325dbc94edb67…
Author: guerler <aysam.guerler(a)gmail.com>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M templates/admin/tool_shed_repository/browse_repository.mako
M templates/admin/tool_shed_repository/browse_tool_dependency.mako
M templates/admin/tool_shed_repository/deactivate_or_uninstall_repository.mako
M templates/admin/tool_shed_repository/install_tool_dependencies_with_update.mako
M templates/admin/tool_shed_repository/manage_repository.mako
M templates/admin/tool_shed_repository/manage_repository_tool_dependencies.mako
M templates/admin/tool_shed_repository/purge_repository_confirmation.mako
M templates/admin/tool_shed_repository/reselect_tool_panel_section.mako
M templates/admin/tool_shed_repository/select_tool_panel_section.mako
M templates/admin/tool_shed_repository/uninstall_tool_dependencies.mako
M templates/admin/tool_shed_repository/view_tool_metadata.mako
M templates/admin/tool_shed_repository/view_workflow.mako
Log Message:
-----------
Add fixes for toolshed related makos
Commit: 1c466e037762618ea33f9a5758469df9015c4047
https://github.com/galaxyproject/galaxy/commit/1c466e037762618ea33f9a575846…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M client/galaxy/style/scss/ui.scss
M static/style/blue/base.css
M templates/admin/jobs.mako
M templates/admin/review_tool_migration_stages.mako
M templates/admin/tool_shed_repository/browse_repository.mako
M templates/admin/tool_shed_repository/browse_tool_dependency.mako
M templates/admin/tool_shed_repository/deactivate_or_uninstall_repository.mako
M templates/admin/tool_shed_repository/install_tool_dependencies_with_update.mako
M templates/admin/tool_shed_repository/manage_repository.mako
M templates/admin/tool_shed_repository/manage_repository_tool_dependencies.mako
M templates/admin/tool_shed_repository/monitor_repository_installation.mako
M templates/admin/tool_shed_repository/purge_repository_confirmation.mako
M templates/admin/tool_shed_repository/reselect_tool_panel_section.mako
M templates/admin/tool_shed_repository/reset_metadata_on_selected_repositories.mako
M templates/admin/tool_shed_repository/select_tool_panel_section.mako
M templates/admin/tool_shed_repository/uninstall_tool_dependencies.mako
M templates/admin/tool_shed_repository/view_tool_metadata.mako
M templates/admin/tool_shed_repository/view_workflow.mako
M templates/message.mako
M templates/webapps/galaxy/admin/manage_dependencies.mako
M templates/webapps/galaxy/admin/sanitize_whitelist.mako
M templates/webapps/galaxy/admin/view_display_applications.mako
Log Message:
-----------
Merge pull request #6868 from guerler/fix_display_applications
Use card-styles for display applications, job manager and other admin views
Compare: https://github.com/galaxyproject/galaxy/compare/c42cd4b71818...1c466e037762
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
Branch: refs/heads/release_18.09
Home: https://github.com/galaxyproject/galaxy
Commit: b9a01761b03e4ad4c06e86a1250c2f33e62ae0be
https://github.com/galaxyproject/galaxy/commit/b9a01761b03e4ad4c06e86a1250c…
Author: Nicola Soranzo <nicola.soranzo(a)earlham.ac.uk>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M lib/tool_shed/util/hg_util.py
Log Message:
-----------
Do not traceback when uploading a TS repo with no changes
Fix the following traceback when executing `planemo shed_update`:
```
galaxy.web.framework.decorators ERROR 2018-10-15 18:07:38,736 [p:30249,w:1,m:0] [uWSGIWorker1Core1] Uncaught exception in exposed API method:
Traceback (most recent call last):
File "lib/galaxy/web/framework/decorators.py", line 154, in decorator
rval = func(self, trans, *args, **kwargs)
File "lib/galaxy/webapps/tool_shed/api/repositories.py", line 1116, in create_changeset_revision
new_repo_alert
File "lib/tool_shed/util/repository_content_util.py", line 64, in upload_tar
undesirable_files_removed)
File "lib/tool_shed/util/commit_util.py", line 225, in handle_directory_changes
message=commit_message)
File "lib/tool_shed/util/hg_util.py", line 65, in commit_changeset
raise Exception(error_message)
Exception: Error committing '/opt/galaxy/database/community_files/000/repo_1' to repository: Command '['hg', 'commit', '-u', u'earlhaminst', '-m', u'planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/TreeBest commit 22231ebc4e5e990c61243a3609b3347cf63fa024', '/opt/galaxy/database/community_files/000/repo_1']' returned non-zero exit status 1
Output was:
nothing changed
127.0.0.1 - - [15/Oct/2018:18:07:38 +0100] "POST /api/repositories/adb5f5c93f827949/changeset_revision HTTP/1.1" 500 - "-" "python-requests/2.18.4"
```
Commit: d4e2f6d59e15bc06b35824201be30e95209596fb
https://github.com/galaxyproject/galaxy/commit/d4e2f6d59e15bc06b35824201be3…
Author: Martin Cech <marten(a)bx.psu.edu>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M lib/tool_shed/util/hg_util.py
Log Message:
-----------
Merge pull request #6875 from nsoranzo/release_18.09_fix_commit_changeset
[18.09] Do not traceback when uploading a TS repo with no changes
Compare: https://github.com/galaxyproject/galaxy/compare/03073ed1249d...d4e2f6d59e15
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.