May 2018 - galaxy-commits - lists.galaxyproject.org

[galaxyproject/galaxy] 23762f: Docker fixes - release 18.05 edition.
by GitHub 03 May '18

03 May '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 23762f48a3385ffbf08112eb95739672a4656db7 https://github.com/galaxyproject/galaxy/commit/23762f48a3385ffbf08112eb9573… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-05-01 (Tue, 01 May 2018) Changed paths: M .ci/jenkins/selenium/run_tests.sh M run_tests.sh M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh Log Message: ----------- Docker fixes - release 18.05 edition. - Rev to new container with 18.05 dependencies pre-installed. - Enable caching of Yarn stuffs to enable - Redo fix for git not working in node container - was mounting /etc/passwd but that wasn't compat. with Mac OS X, setting these environment variables are. - Rearrange startup script a bit to make it load faster (wait for Selenium right before the tests not before waiting for DB). - Fix random error in logs related to Selenium trying to read something in /root by passing -H to set the Selenium user's home directory. Commit: b84de1e82b36ae94be33ca4bf6e85e4c3ed748d2 https://github.com/galaxyproject/galaxy/commit/b84de1e82b36ae94be33ca4bf6e8… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Remove on-focus tooltips from rule builder. Commit: db8d7e65fedab9795cf41ef6b498358180c727dc https://github.com/galaxyproject/galaxy/commit/db8d7e65fedab9795cf41ef6b498… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M client/galaxy/scripts/mvc/rules/rule-definitions.js Log Message: ----------- Fix #6038. Commit: cb38b2495d9e42ee3e0e8acc13fc60214334c75f https://github.com/galaxyproject/galaxy/commit/cb38b2495d9e42ee3e0e8acc13fc… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/rules/rule-definitions.js Log Message: ----------- Merge pull request #6040 from jmchilton/remove_focus_tooltip [18.05] Two more rule builder fixes. Commit: b8e5893b0d4efee3d2b256bf08b95906a2fd370e https://github.com/galaxyproject/galaxy/commit/b8e5893b0d4efee3d2b256bf08b9… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Fix for building doubly nested collections. The late addition of validation code added for identifier uniqueness checking broke this I think. Commit: 618de018b9507a58945c318a4ac49447ff30023b https://github.com/galaxyproject/galaxy/commit/618de018b9507a58945c318a4ac4… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M .ci/jenkins/selenium/run_tests.sh M run_tests.sh M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh Log Message: ----------- Merge pull request #6029 from jmchilton/release_18.05_broken_tests [18.05] Docker fixes - release 18.05 edition. Commit: e11da5fba90d3ce4823481334888a602e229b588 https://github.com/galaxyproject/galaxy/commit/e11da5fba90d3ce4823481334888… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js M config/plugins/visualizations/heatmap/heatmap_default/src/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js M config/plugins/visualizations/jqplot/jqplot_bar/static/script.css M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml Log Message: ----------- Fix jqplot: boxplot, histogram Fix heatmap clustering Fix nvd3 tool based types Remove global d3 object from heatmap and jqplot Commit: a8fe9a73942fd09a5e65ee51d7407952b362f6d4 https://github.com/galaxyproject/galaxy/commit/a8fe9a73942fd09a5e65ee51d740… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M lib/galaxy/tools/errors.py Log Message: ----------- The link for specific individual history view has changed, but wasn't updated here in the error report. Commit: 6a2c678dcedf426319b77a24f686807ceff0b603 https://github.com/galaxyproject/galaxy/commit/6a2c678dcedf426319b77a24f686… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M client/package.json M client/yarn.lock M static/style/blue/base.css Log Message: ----------- Bump bootstrap from 4.1.0 to 4.1.1 -- has a few bugfixes and hides the chatty and irrelevant (for us) deprecation warning on client build. Commit: ba6c3e6c625c8f2f024408541ad2196efdd5b1e4 https://github.com/galaxyproject/galaxy/commit/ba6c3e6c625c8f2f024408541ad2… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js M config/plugins/visualizations/heatmap/heatmap_default/src/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js M config/plugins/visualizations/jqplot/jqplot_bar/static/script.css M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml Log Message: ----------- Merge pull request #6047 from guerler/fix_charts [18.05] Fix and repack chart tool-based visualizations Commit: 666fec9f7b005676b1dd14e4a01a9a3df3861968 https://github.com/galaxyproject/galaxy/commit/666fec9f7b005676b1dd14e4a01a… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M client/package.json M client/yarn.lock M static/style/blue/base.css Log Message: ----------- Merge pull request #6052 from dannon/bs4_411 [18.05] Bump bootstrap from 4.1.0 to 4.1.1 Commit: 3829b0727d4ef05bdc1680f38babac7ac152350d https://github.com/galaxyproject/galaxy/commit/3829b0727d4ef05bdc1680f38bab… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M templates/display_common.mako Log Message: ----------- Fix one more use of histories/view Commit: 8b733df8953431f16b2bd12e4cdd49090115e082 https://github.com/galaxyproject/galaxy/commit/8b733df8953431f16b2bd12e4cdd… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M lib/galaxy/tools/errors.py M templates/display_common.mako Log Message: ----------- Merge pull request #6051 from dannon/fix_tool_error_report [18.05] Fix tool error report history view link Commit: 3292445872d9333753728828528947dc802a30be https://github.com/galaxyproject/galaxy/commit/3292445872d93337537288285289… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Merge pull request #6045 from jmchilton/remove_focus_tooltip [18.05] Fix for building doubly nested collections. Commit: 3e49e31707fc0539b859fb11bbfd841fb38dda44 https://github.com/galaxyproject/galaxy/commit/3e49e31707fc0539b859fb11bbfd… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M .ci/jenkins/selenium/run_tests.sh M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/rules/rule-definitions.js M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js M client/package.json M client/yarn.lock M config/plugins/visualizations/heatmap/heatmap_default/src/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js M config/plugins/visualizations/jqplot/jqplot_bar/static/script.css M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml M lib/galaxy/tools/errors.py M run_tests.sh M static/style/blue/base.css M templates/display_common.mako M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh Log Message: ----------- Merge branch 'release_18.05' into dev Compare: https://github.com/galaxyproject/galaxy/compare/459384b060e1...3e49e31707fc **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] b8e589: Fix for building doubly nested collections.
by GitHub 03 May '18

03 May '18

Branch: refs/heads/release_18.05 Home: https://github.com/galaxyproject/galaxy Commit: b8e5893b0d4efee3d2b256bf08b95906a2fd370e https://github.com/galaxyproject/galaxy/commit/b8e5893b0d4efee3d2b256bf08b9… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Fix for building doubly nested collections. The late addition of validation code added for identifier uniqueness checking broke this I think. Commit: 3292445872d9333753728828528947dc802a30be https://github.com/galaxyproject/galaxy/commit/3292445872d93337537288285289… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue Log Message: ----------- Merge pull request #6045 from jmchilton/remove_focus_tooltip [18.05] Fix for building doubly nested collections. Compare: https://github.com/galaxyproject/galaxy/compare/8b733df89534...3292445872d9 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] a8fe9a: The link for specific individual history view has ...
by GitHub 03 May '18

03 May '18

Branch: refs/heads/release_18.05 Home: https://github.com/galaxyproject/galaxy Commit: a8fe9a73942fd09a5e65ee51d7407952b362f6d4 https://github.com/galaxyproject/galaxy/commit/a8fe9a73942fd09a5e65ee51d740… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M lib/galaxy/tools/errors.py Log Message: ----------- The link for specific individual history view has changed, but wasn't updated here in the error report. Commit: 3829b0727d4ef05bdc1680f38babac7ac152350d https://github.com/galaxyproject/galaxy/commit/3829b0727d4ef05bdc1680f38bab… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M templates/display_common.mako Log Message: ----------- Fix one more use of histories/view Commit: 8b733df8953431f16b2bd12e4cdd49090115e082 https://github.com/galaxyproject/galaxy/commit/8b733df8953431f16b2bd12e4cdd… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M lib/galaxy/tools/errors.py M templates/display_common.mako Log Message: ----------- Merge pull request #6051 from dannon/fix_tool_error_report [18.05] Fix tool error report history view link Compare: https://github.com/galaxyproject/galaxy/compare/666fec9f7b00...8b733df89534 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/usegalaxy-playbook] fe3096: Install MultiQC version 1.5
by GitHub 03 May '18

03 May '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: fe3096947b10cabcf7bfd20e5c29e7a5d913e113 https://github.com/galaxyproject/usegalaxy-playbook/commit/fe3096947b10cabc… Author: Dave B <dave(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/migrated_tools_conf.xml M env/main/files/galaxy/var/shed_tool_conf.xml Log Message: ----------- Install MultiQC version 1.5 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 6a2c67: Bump bootstrap from 4.1.0 to 4.1.1 -- has a few bu...
by GitHub 03 May '18

03 May '18

Branch: refs/heads/release_18.05 Home: https://github.com/galaxyproject/galaxy Commit: 6a2c678dcedf426319b77a24f686807ceff0b603 https://github.com/galaxyproject/galaxy/commit/6a2c678dcedf426319b77a24f686… Author: Dannon Baker <dannon.baker(a)gmail.com> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M client/package.json M client/yarn.lock M static/style/blue/base.css Log Message: ----------- Bump bootstrap from 4.1.0 to 4.1.1 -- has a few bugfixes and hides the chatty and irrelevant (for us) deprecation warning on client build. Commit: 666fec9f7b005676b1dd14e4a01a9a3df3861968 https://github.com/galaxyproject/galaxy/commit/666fec9f7b005676b1dd14e4a01a… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M client/package.json M client/yarn.lock M static/style/blue/base.css Log Message: ----------- Merge pull request #6052 from dannon/bs4_411 [18.05] Bump bootstrap from 4.1.0 to 4.1.1 Compare: https://github.com/galaxyproject/galaxy/compare/ba6c3e6c625c...666fec9f7b00 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] e11da5: Fix jqplot: boxplot, histogram
by GitHub 03 May '18

03 May '18

Branch: refs/heads/release_18.05 Home: https://github.com/galaxyproject/galaxy Commit: e11da5fba90d3ce4823481334888a602e229b588 https://github.com/galaxyproject/galaxy/commit/e11da5fba90d3ce4823481334888… Author: guerler <aysam.guerler(a)gmail.com> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js M config/plugins/visualizations/heatmap/heatmap_default/src/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js M config/plugins/visualizations/jqplot/jqplot_bar/static/script.css M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml Log Message: ----------- Fix jqplot: boxplot, histogram Fix heatmap clustering Fix nvd3 tool based types Remove global d3 object from heatmap and jqplot Commit: ba6c3e6c625c8f2f024408541ad2196efdd5b1e4 https://github.com/galaxyproject/galaxy/commit/ba6c3e6c625c8f2f024408541ad2… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js M config/plugins/visualizations/heatmap/heatmap_default/src/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js M config/plugins/visualizations/jqplot/jqplot_bar/static/script.css M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml Log Message: ----------- Merge pull request #6047 from guerler/fix_charts [18.05] Fix and repack chart tool-based visualizations Compare: https://github.com/galaxyproject/galaxy/compare/618de018b950...ba6c3e6c625c **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] f8606a: Increase precision of metric_value on job_metric_n...
by GitHub 03 May '18

03 May '18

Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: f8606a81db718ba19d9ecc3ae05e63d629da5ad7 https://github.com/galaxyproject/galaxy/commit/f8606a81db718ba19d9ecc3ae05e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M lib/galaxy/model/__init__.py A lib/galaxy/model/migrate/versions/0142_change_numeric_metric_precision.py Log Message: ----------- Increase precision of metric_value on job_metric_numeric to 26. Commit: ab8542a24c55271b08c356b3c242a0dbe729a360 https://github.com/galaxyproject/galaxy/commit/ab8542a24c55271b08c356b3c242… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M config/job_metrics_conf.xml.sample M lib/galaxy/jobs/metrics/instrumenters/cgroup.py Log Message: ----------- Allow selection of specific cgroup params for cgroup metrics plugin Commit: a543b62fd3b966352030a24c7b6dbf0ce4f96146 https://github.com/galaxyproject/galaxy/commit/a543b62fd3b966352030a24c7b6d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M lib/galaxy/model/__init__.py Log Message: ----------- Add a note that metrics column sizes can't be changed simply by changing their constants in model Commit: 459384b060e131d897f3d6d5dce6e9f64c45d18d https://github.com/galaxyproject/galaxy/commit/459384b060e131d897f3d6d5dce6… Author: Dannon <dannon.baker(a)gmail.com> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M config/job_metrics_conf.xml.sample M lib/galaxy/jobs/metrics/instrumenters/cgroup.py M lib/galaxy/model/__init__.py A lib/galaxy/model/migrate/versions/0142_change_numeric_metric_precision.py Log Message: ----------- Merge pull request #5993 from natefoo/cgroup-metric-enhancements Minor enhancements for cgroup metrics Compare: https://github.com/galaxyproject/galaxy/compare/6006d9bfcad1...459384b060e1 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/infrastructure-playbook] 1daa68: Run spartbalance more frequently
by GitHub 03 May '18

03 May '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/infrastructure-playbook Commit: 1daa68776bbf67b6b0edbbed3e7e4746f31cb968 https://github.com/galaxyproject/infrastructure-playbook/commit/1daa68776bb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-03 (Thu, 03 May 2018) Changed paths: M env/tacc/group_vars/slurmservers.yml Log Message: ----------- Run spartbalance more frequently **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/usegalaxy-playbook] 796189: Enable Docker Swarm failover on Main
by GitHub 02 May '18

02 May '18

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 796189ea192caa692980ff62fee0f7ff18dd5031 https://github.com/galaxyproject/usegalaxy-playbook/commit/796189ea192caa69… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M env/main/group_vars/galaxywebservers.yml Log Message: ----------- Enable Docker Swarm failover on Main **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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[galaxyproject/galaxy] 23762f: Docker fixes - release 18.05 edition.
by GitHub 02 May '18

02 May '18

Branch: refs/heads/release_18.05 Home: https://github.com/galaxyproject/galaxy Commit: 23762f48a3385ffbf08112eb95739672a4656db7 https://github.com/galaxyproject/galaxy/commit/23762f48a3385ffbf08112eb9573… Author: John Chilton <jmchilton(a)gmail.com> Date: 2018-05-01 (Tue, 01 May 2018) Changed paths: M .ci/jenkins/selenium/run_tests.sh M run_tests.sh M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh Log Message: ----------- Docker fixes - release 18.05 edition. - Rev to new container with 18.05 dependencies pre-installed. - Enable caching of Yarn stuffs to enable - Redo fix for git not working in node container - was mounting /etc/passwd but that wasn't compat. with Mac OS X, setting these environment variables are. - Rearrange startup script a bit to make it load faster (wait for Selenium right before the tests not before waiting for DB). - Fix random error in logs related to Selenium trying to read something in /root by passing -H to set the Selenium user's home directory. Commit: 618de018b9507a58945c318a4ac49447ff30023b https://github.com/galaxyproject/galaxy/commit/618de018b9507a58945c318a4ac4… Author: Martin Cech <marten(a)bx.psu.edu> Date: 2018-05-02 (Wed, 02 May 2018) Changed paths: M .ci/jenkins/selenium/run_tests.sh M run_tests.sh M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh Log Message: ----------- Merge pull request #6029 from jmchilton/release_18.05_broken_tests [18.05] Docker fixes - release 18.05 edition. Compare: https://github.com/galaxyproject/galaxy/compare/cb38b2495d9e...618de018b950 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.

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