- galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] b8ad8e: Update natefoo.postgresql_objects role
by GitHub 08 Apr '15

08 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: b8ad8e3c9f9ab019361350e72297562e708f4764 https://github.com/galaxyproject/usegalaxy-playbook/commit/b8ad8e3c9f9ab019… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-01 (Wed, 01 Apr 2015) Changed paths: M roles/natefoo.postgresql_objects/README.md M roles/natefoo.postgresql_objects/defaults/main.yml M roles/natefoo.postgresql_objects/meta/.galaxy_install_info M roles/natefoo.postgresql_objects/meta/main.yml M roles/natefoo.postgresql_objects/tasks/main.yml Log Message: ----------- Update natefoo.postgresql_objects role Commit: 50309667b81a15c0fa4c77675763e5171b93f7ba https://github.com/galaxyproject/usegalaxy-playbook/commit/50309667b81a15c0… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-01 (Wed, 01 Apr 2015) Changed paths: A roles/galaxyprojectdotorg.galaxy_toolshed/defaults/main.yml A roles/galaxyprojectdotorg.galaxy_toolshed/handlers/main.yml A roles/galaxyprojectdotorg.galaxy_toolshed/tasks/database.yml A roles/galaxyprojectdotorg.galaxy_toolshed/tasks/main.yml A roles/galaxyprojectdotorg.galaxy_toolshed/tasks/static_setup.yml A roles/galaxyprojectdotorg.galaxy_toolshed/templates/tool_shed.ini.j2 Log Message: ----------- Install galaxyprojectdotorg.galaxy_toolshed role Commit: 79b9ce6f4cbffbe34cba543bb6762dd96a1e6a49 https://github.com/galaxyproject/usegalaxy-playbook/commit/79b9ce6f4cbffbe3… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-01 (Wed, 01 Apr 2015) Changed paths: A roles/galaxyprojectdotorg.postgresql/.gitignore A roles/galaxyprojectdotorg.postgresql/README.md A roles/galaxyprojectdotorg.postgresql/defaults/main.yml A roles/galaxyprojectdotorg.postgresql/files/get_repo_rpm_release.py A roles/galaxyprojectdotorg.postgresql/handlers/main.yml A roles/galaxyprojectdotorg.postgresql/meta/.galaxy_install_info A roles/galaxyprojectdotorg.postgresql/meta/main.yml A roles/galaxyprojectdotorg.postgresql/tasks/backup.yml A roles/galaxyprojectdotorg.postgresql/tasks/debian.yml A roles/galaxyprojectdotorg.postgresql/tasks/main.yml A roles/galaxyprojectdotorg.postgresql/tasks/redhat.yml A roles/galaxyprojectdotorg.postgresql/templates/20ansible_backup.conf.j2 A roles/galaxyprojectdotorg.postgresql/templates/25ansible_postgresql.conf.j2 A roles/galaxyprojectdotorg.postgresql/templates/archive_wal.sh.j2 A roles/galaxyprojectdotorg.postgresql/templates/backup_working_wal.sh.j2 A roles/galaxyprojectdotorg.postgresql/templates/pg_hba.conf.debian.j2 A roles/galaxyprojectdotorg.postgresql/templates/pg_hba.conf.redhat.j2 A roles/galaxyprojectdotorg.postgresql/templates/scheduled_backup.sh.j2 A roles/galaxyprojectdotorg.postgresql/vars/debian.yml A roles/galaxyprojectdotorg.postgresql/vars/main.yml A roles/galaxyprojectdotorg.postgresql/vars/redhat.yml Log Message: ----------- Install galaxyprojectdotorg.postgresql role. Commit: cb4973efd48cc088c6b6b26da84f7164b825c4c1 https://github.com/galaxyproject/usegalaxy-playbook/commit/cb4973efd48cc088… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: M files/galaxy/usegalaxy.org/config/job_resource_params_conf.xml A files/galaxy/usegalaxy.org/dynamic_rules/local_stampede_select.py M files/galaxy/usegalaxy.org/dynamic_rules/reserved.py R files/galaxy/usegalaxy.org/dynamic_rules/roundup_stampede_select.py M files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml M files/galaxy/usegalaxy.org/var/migrated_tools_conf.xml M files/galaxy/usegalaxy.org/var/shed_tool_conf.xml M files/galaxy/usegalaxy.org/var/shed_tool_data_table_conf.xml M galaxy.yml M galaxy_configs.yml M production/group_vars/galaxyservers.yml M stage/group_vars/all.yml M stage/group_vars/galaxyservers.yml M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Merge branch 'master' of ssh://github.com/galaxyproject/usegalaxy-playbook Commit: 5893057edf68112099708727543f5e79660e97f9 https://github.com/galaxyproject/usegalaxy-playbook/commit/5893057edf681120… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: M roles/supervisor/defaults/main.yml M roles/supervisor/tasks/main.yml A roles/supervisor/templates/systemd.init.j2 Log Message: ----------- systemd config for the supervisor role Commit: 494cc7ce14dc847e610aec3048f7113f28f12c07 https://github.com/galaxyproject/usegalaxy-playbook/commit/494cc7ce14dc847e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A roles/galaxyprojectdotorg.nginx/README.md A roles/galaxyprojectdotorg.nginx/defaults/main.yml A roles/galaxyprojectdotorg.nginx/handlers/main.yml A roles/galaxyprojectdotorg.nginx/meta/main.yml A roles/galaxyprojectdotorg.nginx/tasks/apt.yml A roles/galaxyprojectdotorg.nginx/tasks/main.yml A roles/galaxyprojectdotorg.nginx/templates/http_options.conf.j2 A roles/galaxyprojectdotorg.nginx/templates/ssl.conf.j2 Log Message: ----------- Add the galaxyprojectdotorg.nginx role Commit: 7edf29a671937fbc15afbe0d300833cf17fc1bc8 https://github.com/galaxyproject/usegalaxy-playbook/commit/7edf29a671937fbc… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A roles/timezone/defaults/main.yml A roles/timezone/handlers/main.yml A roles/timezone/tasks/main.yml Log Message: ----------- Add timezone role Commit: 16e62252eab2e2f4ba3bf844bcf9479db5e0fcbd https://github.com/galaxyproject/usegalaxy-playbook/commit/16e62252eab2e2f4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A roles/virtual/tasks/main.yml Log Message: ----------- Add virtual role Commit: a64936f5455a64bbebcc747e5a29c1feb0c5cd50 https://github.com/galaxyproject/usegalaxy-playbook/commit/a64936f5455a64bb… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A roles/users/defaults/main.yml A roles/users/tasks/main.yml Log Message: ----------- Add users module for user creation and SSH key management Commit: 127a75720a2658e6bf4e71a61dec32ccc53e8f07 https://github.com/galaxyproject/usegalaxy-playbook/commit/127a75720a2658e6… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A roles/ssh/handlers/main.yml A roles/ssh/tasks/main.yml Log Message: ----------- Add ssh role (permitting root/password auth) Commit: 5d2c9fcadae19660e70ed9eea74f208b4b5d6014 https://github.com/galaxyproject/usegalaxy-playbook/commit/5d2c9fcadae19660… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A roles/requiretty/tasks/main.yml Log Message: ----------- Add requiretty role (enables Ansible pipelining). Commit: b5e89fd0d35e41cf54d42c55067b2c9e59a6f482 https://github.com/galaxyproject/usegalaxy-playbook/commit/b5e89fd0d35e41cf… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A roles/paths/tasks/main.yml Log Message: ----------- Add the paths role (handles filesystems, mounts, and directory permissions) Commit: d69c9824564077a40c609f232aabc75f48cc22f5 https://github.com/galaxyproject/usegalaxy-playbook/commit/d69c9824564077a4… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A roles/packages/defaults/main.yml A roles/packages/tasks/main.yml Log Message: ----------- Add a generic package installation role Commit: 96eaab74acbc0c9af660f5ebb604183f8399a8b6 https://github.com/galaxyproject/usegalaxy-playbook/commit/96eaab74acbc0c9a… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A files/toolshed/common/error/413/index.html A files/toolshed/common/error/502/index.shtml A files/toolshed/common/error/content_bg.png A files/toolshed/common/error/error_message_icon.png A files/toolshed/common/error/masthead_bg.png A files/toolshed/testtoolshed.g2.bx.psu.edu/error A roles/errordocs/tasks/main.yml Log Message: ----------- Add a role for the standard Galaxy error documents. Commit: 1dbe1671db7c1e718264b32306cefbfadc974a6e https://github.com/galaxyproject/usegalaxy-playbook/commit/1dbe1671db7c1e71… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: A common/group_vars/all.yml A common/group_vars/all_debian_based_hosts.yml A common/host_vars/radegast.galaxyproject.org.yml A common/inventory A common_infrastructure.yml A files/ssl/montana.galaxyproject.org_cert.pem A stage/group_vars/toolsheddbservers.yml A stage/group_vars/toolshedservers.yml A stage/host_vars/radegast.galaxyproject.org.yml M stage/inventory A stage/secret_vars/ssl.yml A stage/secret_vars/toolshedservers.yml A templates/nginx/testtoolshed.j2 A templates/supervisor/toolshed.conf.j2 A toolshed.yml A toolshed_infrastructure.yml Log Message: ----------- Make use of all that stuff I just added to manage radegast and the Test Tool Shed (on radegast). Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/6487944ad287...…

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[galaxyproject/usegalaxy-playbook] 648794: Properly generate impersonation config with proxy-...
by GitHub 08 Apr '15

08 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 6487944ad287821cb23550399c07cff77f7f5256 https://github.com/galaxyproject/usegalaxy-playbook/commit/6487944ad287821c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-04-08 (Wed, 08 Apr 2015) Changed paths: M galaxy.yml M galaxy_configs.yml M production/group_vars/galaxyservers.yml M stage/group_vars/galaxyservers.yml Log Message: ----------- Properly generate impersonation config with proxy-prefix enabled.

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[galaxyproject/usegalaxy-playbook] 43c0b4: Update test to 05f8d9f41187586986159733698ba524bcf...
by GitHub 02 Apr '15

02 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 43c0b4d38ed54d807124ab2886cf6b1a1377128d https://github.com/galaxyproject/usegalaxy-playbook/commit/43c0b4d38ed54d80… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-04-02 (Thu, 02 Apr 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update test to 05f8d9f41187586986159733698ba524bcf0d164.

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[galaxyproject/usegalaxy-playbook] 4cd48d: Update test.
by GitHub 02 Apr '15

02 Apr '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 4cd48d55f3a9e2a2e02e4c1085c6669d5a2d1bfd https://github.com/galaxyproject/usegalaxy-playbook/commit/4cd48d55f3a9e2a2… Author: Dave B <dave(a)bx.psu.edu> Date: 2015-04-02 (Thu, 02 Apr 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update test.

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[galaxyproject/usegalaxy-playbook] 12b563: Sanitize destination names on Main, fix reserved p...
by GitHub 01 Apr '15

01 Apr '15

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[galaxyproject/usegalaxy-playbook] 101a05: Run bwa/bwa-mem on multi on Main
by GitHub 27 Mar '15

27 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 101a052346adbd6d6296a1d5be221a259be92a17 https://github.com/galaxyproject/usegalaxy-playbook/commit/101a052346adbd6d… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-27 (Fri, 27 Mar 2015) Changed paths: M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Run bwa/bwa-mem on multi on Main

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[galaxyproject/usegalaxy-playbook] b605dd: update test
by GitHub 26 Mar '15

26 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: b605dd2b021a55ac3b86255cc0fb1c47972fecf0 https://github.com/galaxyproject/usegalaxy-playbook/commit/b605dd2b021a55ac… Author: Martin Cech <cech.marten(a)gmail.com> Date: 2015-03-26 (Thu, 26 Mar 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- update test

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[galaxyproject/usegalaxy-playbook] 1bea40: Update test to c17a9ca15d5f18ea218157c5e0b8f2b78ee...
by GitHub 26 Mar '15

26 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1bea40226776ec3d070a5037653576d31131ace6 https://github.com/galaxyproject/usegalaxy-playbook/commit/1bea40226776ec3d… Author: Daniel Blankenberg <dan.blankenberg(a)gmail.com> Date: 2015-03-26 (Thu, 26 Mar 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update test to c17a9ca15d5f18ea218157c5e0b8f2b78eeabbd1.

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[galaxyproject/usegalaxy-playbook] 398b59: Blacklight dependency build env
by GitHub 26 Mar '15

26 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 398b59e50235a31c1c85ae98d4c42af031f7876c https://github.com/galaxyproject/usegalaxy-playbook/commit/398b59e50235a31c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-26 (Thu, 26 Mar 2015) Changed paths: M stage/host_vars/tg-login2.blacklight.psc.xsede.org.yml Log Message: ----------- Blacklight dependency build env

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[galaxyproject/usegalaxy-playbook] 99d50d: Update Test again
by GitHub 25 Mar '15

25 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 99d50d872542507f21d2c72259d2463759939c28 https://github.com/galaxyproject/usegalaxy-playbook/commit/99d50d872542507f… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-25 (Wed, 25 Mar 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update Test again

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