- galaxy-commits - lists.galaxyproject.org

[galaxyproject/usegalaxy-playbook] 3f623e: Mutable configs from Test
by GitHub 25 Mar '15

25 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 3f623eb9db8a1a417417e17e6c5eb61993360d06 https://github.com/galaxyproject/usegalaxy-playbook/commit/3f623eb9db8a1a41… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-25 (Wed, 25 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_data_table_conf.xml Log Message: ----------- Mutable configs from Test

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[galaxyproject/usegalaxy-playbook] 061191: Temporarily force all (old) BWA jobs on Test to St...
by GitHub 25 Mar '15

25 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 061191a5fc6b212e504cfa0fcfcdbf2a8232106b https://github.com/galaxyproject/usegalaxy-playbook/commit/061191a5fc6b212e… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-25 (Wed, 25 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/dynamic_rules/multi_dynamic_walltime.py Log Message: ----------- Temporarily force all (old) BWA jobs on Test to Stampede for testing resubmission. Commit: 05a1afcf3f8c9be14d3ba8927f7228ddfa3f8336 https://github.com/galaxyproject/usegalaxy-playbook/commit/05a1afcf3f8c9be1… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-25 (Wed, 25 Mar 2015) Changed paths: M stage/group_vars/all.yml Log Message: ----------- Update Test. Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/0a52744511ca...…

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[galaxyproject/usegalaxy-playbook] 0a5274: Disable rodeo submission entirely as I am working ...
by GitHub 24 Mar '15

24 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 0a52744511caef154e841cf2032e751da89aba48 https://github.com/galaxyproject/usegalaxy-playbook/commit/0a52744511caef15… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-24 (Tue, 24 Mar 2015) Changed paths: M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Disable rodeo submission entirely as I am working on it.

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[galaxyproject/usegalaxy-playbook] 0bc124: Fix stampede resubmit destination on Test
by GitHub 23 Mar '15

23 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 0bc1246c1b7e1990f2d762d0176c1658b9cf682a https://github.com/galaxyproject/usegalaxy-playbook/commit/0bc1246c1b7e1990… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-23 (Mon, 23 Mar 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Fix stampede resubmit destination on Test

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[galaxyproject/usegalaxy-playbook] 961b01: Give bamtools 16GB.
by GitHub 20 Mar '15

20 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 961b01692cd249b3ff8079ef2496b6f601592a51 https://github.com/galaxyproject/usegalaxy-playbook/commit/961b01692cd249b3… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-20 (Fri, 20 Mar 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Give bamtools 16GB.

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[galaxyproject/usegalaxy-playbook] e457cb: Fix boolean usage in nvc dynamic rule
by GitHub 20 Mar '15

20 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: e457cb9598045ed3398f0bd6911902d01ce44376 https://github.com/galaxyproject/usegalaxy-playbook/commit/e457cb9598045ed3… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-20 (Fri, 20 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/dynamic_rules/nvc_dynamic_memory.py Log Message: ----------- Fix boolean usage in nvc dynamic rule

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[galaxyproject/usegalaxy-playbook] 1dfeee: Put NVC jobs in the normal partition until >16GB i...
by GitHub 19 Mar '15

19 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 1dfeee4c35ad4e43fe1d71b199e905ed925b63c9 https://github.com/galaxyproject/usegalaxy-playbook/commit/1dfeee4c35ad4e43… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-19 (Thu, 19 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/dynamic_rules/nvc_dynamic_memory.py Log Message: ----------- Put NVC jobs in the normal partition until >16GB is required Commit: 2cdb32387197ef7ca691c02b2b6fc332de8b3088 https://github.com/galaxyproject/usegalaxy-playbook/commit/2cdb32387197ef7c… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-19 (Thu, 19 Mar 2015) Changed paths: M files/galaxy/test.galaxyproject.org/var/integrated_tool_panel.xml M files/galaxy/test.galaxyproject.org/var/shed_tool_conf.xml Log Message: ----------- Updated mutable configs on Test Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/ffb2e3ac2663...…

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[galaxyproject/usegalaxy-playbook] ffb2e3: Dynamic rule for naive variant caller
by GitHub 19 Mar '15

19 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: ffb2e3ac266319b708524da4e6e8b3754cb9d3c7 https://github.com/galaxyproject/usegalaxy-playbook/commit/ffb2e3ac266319b7… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-19 (Thu, 19 Mar 2015) Changed paths: A files/galaxy/test.galaxyproject.org/dynamic_rules/nvc_dynamic_memory.py M stage/group_vars/galaxyservers.yml M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 Log Message: ----------- Dynamic rule for naive variant caller

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[galaxyproject/usegalaxy-playbook] 776199: Separate playbook that only manages configs, for s...
by GitHub 19 Mar '15

19 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: 7761998fa0b949e741b43d324d0e18322af5dc05 https://github.com/galaxyproject/usegalaxy-playbook/commit/7761998fa0b949e7… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-19 (Thu, 19 Mar 2015) Changed paths: M galaxy.yml A galaxy_configs.yml A roles/usegalaxy/defaults Log Message: ----------- Separate playbook that only manages configs, for speed.

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[galaxyproject/usegalaxy-playbook] c748a0: Increase memory for Picard SortSam
by GitHub 19 Mar '15

19 Mar '15

Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: c748a0aa7f6e7d57d1c2d37c93856dbb7c4866e8 https://github.com/galaxyproject/usegalaxy-playbook/commit/c748a0aa7f6e7d57… Author: Nate Coraor <nate(a)bx.psu.edu> Date: 2015-03-19 (Thu, 19 Mar 2015) Changed paths: M templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 M templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 Log Message: ----------- Increase memory for Picard SortSam

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