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galaxy-dist commit 5cde0b6269e3: API: Add library creation functionality. Note that no roles can be associated with libraries via the API at this time.
by commits-noreply＠bitbucket.org 29 Jun '10

29 Jun '10

# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Nate Coraor <nate(a)bx.psu.edu> # Date 1277318677 14400 # Node ID 5cde0b6269e320c2bd769222cbd40f2e8956b7c5 # Parent e177f00679e9f8106c346251c1f8bdc0ece127d5 API: Add library creation functionality. Note that no roles can be associated with libraries via the API at this time. --- a/lib/galaxy/model/__init__.py +++ b/lib/galaxy/model/__init__.py @@ -830,7 +830,7 @@ class HistoryDatasetAssociationDisplayAt class Library( object ): permitted_actions = get_permitted_actions( filter='LIBRARY' ) api_collection_visible_keys = ( 'id', 'name' ) - api_element_visible_keys = ( 'name', 'description', 'synopsys' ) + api_element_visible_keys = ( 'name', 'description', 'synopsis' ) def __init__( self, name=None, description=None, synopsis=None, root_folder=None ): self.name = name or "Unnamed library" self.description = description --- a/scripts/api/README +++ b/scripts/api/README @@ -13,9 +13,20 @@ subdirectories. In Galaxy, create an account that matches the address you put in 'admin_users', then browse to that user's preferences and generate a new API Key. Copy the -key to your clipboard. Create a new library (doing this via the API is not yet -implemented). Then take your API Key and use the scripts in scripts/api/ to do -things: +key to your clipboard and then use these scripts: + +% ./display.py my_key http://localhost:4096/api/libraries +Collection Members +------------------ + +0 elements in collection + +% ./library_create_library.py my_key http://localhost:4096/api/libraries api_test 'API Test Library' +Response +-------- +/api/libraries/f3f73e481f432006 + name: api_test + id: f3f73e481f432006 % ./display.py my_key http://localhost:4096/api/libraries Collection Members @@ -27,7 +38,7 @@ Collection Members % ./display.py my_key http://localhost:4096/api/libraries/f3f73e481f432006 Member Information ------------------ -synopsys: None +synopsis: None contents_url: /api/libraries/f3f73e481f432006/contents description: API Test Library name: api_test --- /dev/null +++ b/scripts/api/library_create_library.py @@ -0,0 +1,19 @@ +#!/usr/bin/python + +import os, sys +sys.path.insert( 0, os.path.dirname( __file__ ) ) +from common import submit + +try: + data = {} + data[ 'name' ] = sys.argv[3] +except IndexError: + print 'usage: %s key url name [description] [synopsys]' % os.path.basename( sys.argv[0] ) + sys.exit( 1 ) +try: + data[ 'description' ] = sys.argv[4] + data[ 'synopsis' ] = sys.argv[5] +except IndexError: + pass + +submit( sys.argv[1], sys.argv[2], data ) --- a/lib/galaxy/web/api/libraries.py +++ b/lib/galaxy/web/api/libraries.py @@ -60,3 +60,33 @@ class LibrariesController( BaseControlle item = library.get_api_value( view='element' ) item['contents_url'] = url_for( 'contents', library_id=library_id ) return item + + @web.expose_api + def create( self, trans, payload, **kwd ): + """ + POST /api/libraries + Creates a new library. + """ + if not trans.user_is_admin(): + trans.response.status = 403 + return "You are not authorized to create a new library." + params = util.Params( payload ) + name = util.restore_text( params.get( 'name', None ) ) + if not name: + trans.response.status = 400 + return "Missing required parameter 'name'." + description = util.restore_text( params.get( 'description', '' ) ) + synopsis = util.restore_text( params.get( 'synopsis', '' ) ) + if synopsis in [ 'None', None ]: + synopsis = '' + library = trans.app.model.Library( name=name, description=description, synopsis=synopsis ) + root_folder = trans.app.model.LibraryFolder( name=name, description='' ) + library.root_folder = root_folder + trans.sa_session.add_all( ( library, root_folder ) ) + trans.sa_session.flush() + encoded_id = trans.security.encode_id( library.id ) + rval = {} + rval['url'] = url_for( 'libraries', id=encoded_id ) + rval['name'] = name + rval['id'] = encoded_id + return [ rval ]

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galaxy-dist commit 8adc2157e02a: Removed extra cloud clause left from earlier code cleanup. Resoves issue #350
by commits-noreply＠bitbucket.org 29 Jun '10

29 Jun '10

# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Enis Afgan <afgane(a)gmail.com> # Date 1277351003 14400 # Node ID 8adc2157e02a8b144697147b5e5a64833f0d1964 # Parent 150c8db8dec1f36d42baea62c895f52d983d9e60 Removed extra cloud clause left from earlier code cleanup. Resoves issue #350 --- a/lib/galaxy/app.py +++ b/lib/galaxy/app.py @@ -1,6 +1,6 @@ import sys, os, atexit -from galaxy import config, jobs, util, tools, web, cloud +from galaxy import config, jobs, util, tools, web import galaxy.tools.search from galaxy.web import security import galaxy.model

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galaxy-dist commit e177f00679e9: trackster fix now skips incorrect twobit.loc locations
by commits-noreply＠bitbucket.org 29 Jun '10

29 Jun '10

# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Kanwei Li <kanwei(a)gmail.com> # Date 1277317926 14400 # Node ID e177f00679e9f8106c346251c1f8bdc0ece127d5 # Parent 067a8649dae79ab973ff3821b62be89e21a0117a trackster fix now skips incorrect twobit.loc locations --- a/lib/galaxy/web/controllers/tracks.py +++ b/lib/galaxy/web/controllers/tracks.py @@ -101,8 +101,10 @@ class TracksController( BaseController, avail_genomes = {} for line in open( os.path.join( trans.app.config.tool_data_path, "twobit.loc" ) ): if line.startswith("#"): continue - key, path = line.split() - avail_genomes[key] = path + val = line.split() + if len(val) == 2: + key, path = val + avail_genomes[key] = path self.available_genomes = avail_genomes @web.expose

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galaxy-dist commit a6b59463d4c7: Add colon as a delimiter for 'Convert delimiters to TAB' tool.
by commits-noreply＠bitbucket.org 21 Jun '10

21 Jun '10

# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User jeremy goecks <jeremy.goecks(a)emory.edu> # Date 1276093621 14400 # Node ID a6b59463d4c7426a60e976064fd6f98acaac9cd4 # Parent 837aabec314e9ddbb5827972d99c395b1dff33bb Add colon as a delimiter for 'Convert delimiters to TAB' tool. --- a/tools/filters/convert_characters.py +++ b/tools/filters/convert_characters.py @@ -24,7 +24,7 @@ def main(): except: stop_err("Output file cannot be opened for writing.") - char_dict = {'T':'\t','s':'\s','Dt':'\.','C':',','D':'-','U':'_','P':'\|'} + char_dict = {'T':'\t','s':'\s','Dt':'\.','C':',','D':'-','U':'_','P':'\|','Co':':'} from_ch = char_dict[from_char] + '+' #making an RE to match 1 or more occurences. skipped = 0 --- a/tools/filters/convert_characters.xml +++ b/tools/filters/convert_characters.xml @@ -11,6 +11,7 @@ <option value="D">Dashes</option><option value="U">Underscores</option><option value="P">Pipes</option> + <option value="Co">Colons</option></param><param format="txt" name="input" type="data" label="in Query"/></inputs> @@ -22,11 +23,11 @@ <param name="convert_from" value="s"/><param name="input" value="1.bed"/><output name="out_file1" file="eq-convert.dat"/> - </test> - <test> - <param name="convert_from" value="s"/> - <param name="input" value="a.txt"/> - <output name="out_file1" file="a.tab"/> + </test> + <test> + <param name="convert_from" value="s"/> + <param name="input" value="a.txt"/> + <output name="out_file1" file="a.tab"/></test></tests><help>

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galaxy-dist commit 837aabec314e: Fixes for displaying history items and library datasets that use a specified dataset file.
by commits-noreply＠bitbucket.org 08 Jun '10

08 Jun '10

# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Greg Von Kuster <greg(a)bx.psu.edu> # Date 1276017915 14400 # Node ID 837aabec314e9ddbb5827972d99c395b1dff33bb # Parent cd7705e2e0c4264f4c9c1962cfb7eff6e1634c75 Fixes for displaying history items and library datasets that use a specified dataset file. --- a/templates/webapps/reports/system.mako +++ b/templates/webapps/reports/system.mako @@ -78,7 +78,7 @@ <tr class="tr"> %endif <td> - <% dataset_label = 'dataset%d_.dat' % dataset.id %> + <% dataset_label = 'dataset_%d.dat' % dataset.id %><a href="${h.url_for( controller='system', action='dataset_info', id=trans.security.encode_id( dataset.id ) )}">${dataset_label}</a></td><td>${time_ago( dataset.update_time )}</td> --- a/templates/webapps/reports/dataset_info.mako +++ b/templates/webapps/reports/dataset_info.mako @@ -50,11 +50,17 @@ </thead> %for hda in associated_hdas: <tr> - <td>${hda.history.get_display_name()}</td> + <td> + %if hda.history: + ${hda.history.get_display_name()} + %else: + no history + %endif + </td><td>${hda.get_display_name()}</td><td>${time_ago( hda.update_time )}</td><td> - %if hda.history.user: + %if hda.history and hda.history.user: ${hda.history.user.email} %else: anonymous @@ -88,7 +94,7 @@ if containing_library: library_display_name = containing_library.get_display_name() else: - library_display_name = 'error finding library' + library_display_name = 'no library' %> ${library_display_name} </td> --- a/templates/library/common/ldda_info.mako +++ b/templates/library/common/ldda_info.mako @@ -135,7 +135,7 @@ %if cntrller == 'library_admin': %if associated_hdas: <p/> - <b>History items that use this library dataset's disk file</b> + <b>Active (undeleted) history items that use this library dataset's disk file</b><div class="toolForm"><table class="grid"><thead> @@ -172,7 +172,7 @@ %endif %if associated_lddas: <p/> - <b>Other library datasets that use this library dataset's disk file</b> + <b>Other active (undeleted) library datasets that use this library dataset's disk file</b><div class="toolForm"><table class="grid"><thead> @@ -188,13 +188,29 @@ <% containing_library = get_containing_library_from_library_dataset( trans, copied_ldda.library_dataset ) %><tr><td> + <% + if containing_library: + library_display_name = containing_library.get_display_name() + else: + library_display_name = 'no library' + %> %if containing_library: - <a href="${h.url_for( controller='library_common', action='browse_library', id=trans.security.encode_id( containing_library.id ), cntrller=cntrller, use_panels=use_panels )}">${containing_library.get_display_name()}</a> + <a href="${h.url_for( controller='library_common', action='browse_library', id=trans.security.encode_id( containing_library.id ), cntrller=cntrller, use_panels=use_panels )}">${library_display_name}</a> %else: - error finding library + ${library_display_name} %endif </td> - <td>${copied_ldda.library_dataset.folder.get_display_name()}</td> + <td> + <% + library_dataset = copied_ldda.library_dataset + folder = library_dataset.folder + folder_display_name = folder.get_display_name() + if folder_display_name == library_display_name: + folder_display_name = 'library root' + %> + ${folder_display_name} + ${copied_ldda.library_dataset.folder.get_display_name()} + </td><td>${copied_ldda.get_display_name()}</td><td>${time_ago( copied_ldda.update_time )}</td><td>

1 0

galaxy-dist commit cd7705e2e0c4: Fixes for the reports webapp; grid pages now function as desired, and advanced search features are now functionally correct.
by commits-noreply＠bitbucket.org 08 Jun '10

08 Jun '10

# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Greg Von Kuster <greg(a)bx.psu.edu> # Date 1276010264 14400 # Node ID cd7705e2e0c4264f4c9c1962cfb7eff6e1634c75 # Parent ffd110701ba557277eb0f6476145f3850a1544d1 Fixes for the reports webapp; grid pages now function as desired, and advanced search features are now functionally correct. --- a/templates/webapps/reports/jobs_user_per_month.mako +++ b/templates/webapps/reports/jobs_user_per_month.mako @@ -13,7 +13,7 @@ <h4 align="center">Click Total Jobs to see the user's jobs for that month</h4><table align="center" width="60%" class="colored"> %if len( jobs ) == 0: - <tr><td colspan="2">There are no jobs for user "${email}"</td></tr> + <tr><td colspan="2">There are no jobs for user "${util.restore_text( email )}"</td></tr> %else: <tr class="header"><td>Month</td> @@ -27,7 +27,7 @@ <tr class="tr"> %endif <td>${job[2]} ${job[3]}</td> - <td><a href="${h.url_for( controller='jobs', action='user_for_month', email=email, specified_date=job[0]+'-01' )}">${job[1]}</a></td> + <td><a href="${h.url_for( controller='jobs', action='specified_date_handler', operation='user_for_month', email=email, specified_date=job[0] )}">${job[1]}</a></td></tr><% ctr += 1 %> %endfor --- a/lib/galaxy/webapps/reports/controllers/jobs.py +++ b/lib/galaxy/webapps/reports/controllers/jobs.py @@ -18,13 +18,19 @@ class SpecifiedDateListGrid( grids.Grid class StateColumn( grids.TextColumn ): def get_value( self, trans, grid, job ): return job.state + def filter( self, trans, user, query, column_filter ): + if column_filter == 'Unfinished': + return query.filter( not_( or_( model.Job.table.c.state == model.Job.states.OK, + model.Job.table.c.state == model.Job.states.ERROR, + model.Job.table.c.state == model.Job.states.DELETED ) ) ) + return query class ToolColumn( grids.TextColumn ): def get_value( self, trans, grid, job ): return job.tool_id class CreateTimeColumn( grids.TextColumn ): def get_value( self, trans, grid, job ): return job.create_time - class UserColumn( grids.TextColumn ): + class UserColumn( grids.GridColumn ): def get_value( self, trans, grid, job ): if job.history: if job.history.user: @@ -32,10 +38,38 @@ class SpecifiedDateListGrid( grids.Grid return 'anonymous' # TODO: handle libraries... return 'no history' + class EmailColumn( grids.GridColumn ): + def filter( self, trans, user, query, column_filter ): + if column_filter == 'All': + return query + return query.filter( and_( model.Job.table.c.session_id == model.GalaxySession.table.c.id, + model.GalaxySession.table.c.user_id == model.User.table.c.id, + model.User.table.c.email == column_filter ) ) + class SpecifiedDateColumn( grids.GridColumn ): + def filter( self, trans, user, query, column_filter ): + if column_filter == 'All': + return query + # We are either filtering on a date like YYYY-MM-DD or on a month like YYYY-MM, + # so we need to figure out which type of date we have + if column_filter.count( '-' ) == 2: + # We are filtering on a date like YYYY-MM-DD + year, month, day = map( int, column_filter.split( "-" ) ) + start_date = date( year, month, day ) + end_date = start_date + timedelta( days=1 ) + return query.filter( and_( self.model_class.table.c.create_time >= start_date, + self.model_class.table.c.create_time < end_date ) ) + if column_filter.count( '-' ) == 1: + # We are filtering on a month like YYYY-MM + year, month = map( int, column_filter.split( "-" ) ) + start_date = date( year, month, 1 ) + end_date = start_date + timedelta( days=calendar.monthrange( year, month )[1] ) + return query.filter( and_( self.model_class.table.c.create_time >= start_date, + self.model_class.table.c.create_time < end_date ) ) + # Grid definition use_async = False model_class = model.Job - title = "Jobs By Date" + title = "Jobs" template='/webapps/reports/grid.mako' default_sort_key = "id" columns = [ @@ -54,16 +88,29 @@ class SpecifiedDateListGrid( grids.Grid model_class=model.Job, link=( lambda item: dict( operation="tool_per_month", id=item.id, webapp="reports" ) ), attach_popup=False ), - CreateTimeColumn( "create_time", + CreateTimeColumn( "Creation Time", key="create_time", model_class=model.Job, attach_popup=False ), - UserColumn( "user", + UserColumn( "User", # Can't sort on this column since it is not a column in self.model_class model_class=model.User, link=( lambda item: dict( operation="user_per_month", id=item.id, webapp="reports" ) ), attach_popup=False ), - grids.StateColumn( "state", key="state", model_class=model.Job, visible=False, filterable="advanced" ) + # Columns that are valid for filtering but are not visible. + SpecifiedDateColumn( "Specified Date", + key="specified_date", + model_class=model.Job, + visible=False ), + EmailColumn( "Email", + key="email", + model_class=model.User, + visible=False ), + grids.StateColumn( "State", + key="state", + model_class=model.Job, + visible=False, + filterable="advanced" ) ] columns.append( grids.MulticolFilterColumn( "Search", cols_to_filter=[ columns[1], columns[2] ], @@ -76,113 +123,47 @@ class SpecifiedDateListGrid( grids.Grid preserve_state = False use_paging = True def build_initial_query( self, trans, **kwd ): - specified_date = kwd.get( 'specified_date', 'All' ) - if specified_date == 'All': - return trans.sa_session.query( self.model_class ) \ - .enable_eagerloads( False ) - year, month, day = map( int, specified_date.split( "-" ) ) - start_date = date( year, month, day ) - end_date = start_date + timedelta( days=1 ) return trans.sa_session.query( self.model_class ) \ - .filter( and_( self.model_class.table.c.create_time >= start_date, - self.model_class.table.c.create_time < end_date ) ) \ - .enable_eagerloads( False ) - -class SpecifiedDateInErrorListGrid( SpecifiedDateListGrid ): - def build_initial_query( self, trans, **kwd ): - specified_date = kwd.get( 'specified_date', 'All' ) - if specified_date == 'All': - return trans.sa_session.query( self.model_class ) \ - .filter( self.model_class.table.c.state == model.Job.states.ERROR ) \ - .enable_eagerloads( False ) - year, month, day = map( int, specified_date.split( "-" ) ) - start_date = date( year, month, day ) - end_date = start_date + timedelta( days=1 ) - return trans.sa_session.query( self.model_class ) \ - .filter( and_( self.model_class.table.c.state == model.Job.states.ERROR, - self.model_class.table.c.create_time >= start_date, - self.model_class.table.c.create_time < end_date ) ) \ - .enable_eagerloads( False ) - -class AllUnfinishedListGrid( SpecifiedDateListGrid ): - def build_initial_query( self, trans, **kwd ): - specified_date = kwd.get( 'specified_date', 'All' ) - if specified_date == 'All': - return trans.sa_session.query( self.model_class ) \ - .filter( not_( or_( model.Job.table.c.state == model.Job.states.OK, - model.Job.table.c.state == model.Job.states.ERROR, - model.Job.table.c.state == model.Job.states.DELETED ) ) ) \ - .enable_eagerloads( False ) - year, month, day = map( int, specified_date.split( "-" ) ) - start_date = date( year, month, day ) - end_date = start_date + timedelta( days=1 ) - return trans.sa_session.query( self.model_class ) \ - .filter( and_( not_( or_( model.Job.table.c.state == model.Job.states.OK, - model.Job.table.c.state == model.Job.states.ERROR, - model.Job.table.c.state == model.Job.states.DELETED ) ), - self.model_class.table.c.create_time >= start_date, - self.model_class.table.c.create_time < end_date ) ) \ - .enable_eagerloads( False ) - -class UserForMonthListGrid( SpecifiedDateListGrid ): - def build_initial_query( self, trans, **kwd ): - email = util.restore_text( kwd.get( 'email', '' ) ) - # If specified_date is not received, we'll default to the current month - specified_date = kwd.get( 'specified_date', datetime.utcnow().strftime( "%Y-%m-%d" ) ) - specified_month = specified_date[ :7 ] - year, month = map( int, specified_month.split( "-" ) ) - start_date = date( year, month, 1 ) - end_date = start_date + timedelta( days=calendar.monthrange( year, month )[1] ) - return trans.sa_session.query( model.Job ) \ .join( model.GalaxySession ) \ .join( model.User ) \ - .filter( and_( model.Job.table.c.session_id == model.GalaxySession.table.c.id, - model.GalaxySession.table.c.user_id == model.User.table.c.id, - model.User.table.c.email == email, - model.Job.table.c.create_time >= start_date, - model.Job.table.c.create_time < end_date ) ) \ - .enable_eagerloads( False ) - -class ToolForMonthListGrid( SpecifiedDateListGrid ): - def build_initial_query( self, trans, **kwd ): - # If specified_date is not received, we'll default to the current month - specified_date = kwd.get( 'specified_date', datetime.utcnow().strftime( "%Y-%m-%d" ) ) - specified_month = specified_date[ :7 ] - tool_id = util.restore_text( kwd.get( 'tool_id', '' ) ) - year, month = map( int, specified_month.split( "-" ) ) - start_date = date( year, month, 1 ) - end_date = start_date + timedelta( days=calendar.monthrange( year, month )[1] ) - return trans.sa_session.query( self.model_class ) \ - .filter( and_( self.model_class.table.c.tool_id == tool_id, - self.model_class.table.c.create_time >= start_date, - self.model_class.table.c.create_time < end_date ) ) \ .enable_eagerloads( False ) class Jobs( BaseController ): specified_date_list_grid = SpecifiedDateListGrid() - specified_date_in_error_list_grid = SpecifiedDateInErrorListGrid() - all_unfinished_list_grid = AllUnfinishedListGrid() - user_for_month_list_grid = UserForMonthListGrid() - tool_for_month_list_grid = ToolForMonthListGrid() @web.expose - def specified_date( self, trans, **kwd ): + def specified_date_handler( self, trans, **kwd ): + # We add params to the keyword dict in this method in order to rename the param + # with an "f-" prefix, simulating filtering by clicking a search link. We have + # to take this approach because the "-" character is illegal in HTTP requests. + if 'f-specified_date' in kwd and 'specified_date' not in kwd: + # The user clicked a State link in the Advanced Search box, so 'specified_date' + # will have been eliminated. + pass + elif 'specified_date' not in kwd: + kwd[ 'f-specified_date' ] = 'All' + else: + kwd[ 'f-specified_date' ] = kwd[ 'specified_date' ] if 'operation' in kwd: operation = kwd['operation'].lower() if operation == "job_info": return trans.response.send_redirect( web.url_for( controller='jobs', action='job_info', **kwd ) ) - if operation == "tool_per_month": - # The received id is the job id, so we need to get the jobs tool_id. + elif operation == "tool_for_month": + kwd[ 'f-tool_id' ] = kwd[ 'tool_id' ] + elif operation == "tool_per_month": + # The received id is the job id, so we need to get the job's tool_id. job_id = kwd.get( 'id', None ) job = get_job( trans, job_id ) kwd[ 'tool_id' ] = job.tool_id return trans.response.send_redirect( web.url_for( controller='jobs', action='tool_per_month', **kwd ) ) - if operation == "user_per_month": + elif operation == "user_for_month": + kwd[ 'f-email' ] = util.restore_text( kwd[ 'email' ] ) + elif operation == "user_per_month": # The received id is the job id, so we need to get the id of the user # that submitted the job. job_id = kwd.get( 'id', None ) @@ -196,43 +177,12 @@ class Jobs( BaseController ): return trans.response.send_redirect( web.url_for( controller='jobs', action='user_per_month', **kwd ) ) + elif operation == "specified_date_in_error": + kwd[ 'f-state' ] = 'error' + elif operation == "unfinished": + kwd[ 'f-state' ] = 'Unfinished' return self.specified_date_list_grid( trans, **kwd ) @web.expose - def today_all( self, trans, **kwd ): - kwd[ 'specified_date' ] = datetime.utcnow().strftime( "%Y-%m-%d" ) - return self.specified_date( trans, **kwd ) - @web.expose - def specified_date_in_error( self, trans, **kwd ): - if 'operation' in kwd: - operation = kwd['operation'].lower() - if operation == "job_info": - return trans.response.send_redirect( web.url_for( controller='jobs', - action='job_info', - **kwd ) ) - if operation == "tool_per_month": - # The received id is the job id, so we need to get the jobs tool_id. - job_id = kwd.get( 'id', None ) - job = get_job( trans, job_id ) - kwd[ 'tool_id' ] = job.tool_id - return trans.response.send_redirect( web.url_for( controller='jobs', - action='tool_per_month', - **kwd ) ) - if operation == "user_per_month": - # The received id is the job id, so we need to get the id of the user - # that submitted the job. - job_id = kwd.get( 'id', None ) - job = get_job( trans, job_id ) - kwd[ 'email' ] = None # For anonymous users - if job.history: - if job.history.user: - email = job.history.user.email - kwd[ 'email' ] = email - # TODO: handle libraries - return trans.response.send_redirect( web.url_for( controller='jobs', - action='user_per_month', - **kwd ) ) - return self.specified_date_in_error_list_grid( trans, **kwd ) - @web.expose def specified_month_all( self, trans, **kwd ): params = util.Params( kwd ) message = '' @@ -302,37 +252,6 @@ class Jobs( BaseController ): jobs=jobs, message=message ) @web.expose - def all_unfinished( self, trans, **kwd ): - if 'operation' in kwd: - operation = kwd['operation'].lower() - if operation == "job_info": - return trans.response.send_redirect( web.url_for( controller='jobs', - action='job_info', - **kwd ) ) - if operation == "tool_per_month": - # The received id is the job id, so we need to get the jobs tool_id. - job_id = kwd.get( 'id', None ) - job = get_job( trans, job_id ) - kwd[ 'tool_id' ] = job.tool_id - return trans.response.send_redirect( web.url_for( controller='jobs', - action='tool_per_month', - **kwd ) ) - if operation == "user_per_month": - # The received id is the job id, so we need to get the id of the user - # that submitted the job. - job_id = kwd.get( 'id', None ) - job = get_job( trans, job_id ) - kwd[ 'email' ] = None # For anonymous users - if job.history: - if job.history.user: - email = job.history.user.email - kwd[ 'email' ] = email - # TODO: handle libraries - return trans.response.send_redirect( web.url_for( controller='jobs', - action='user_per_month', - **kwd ) ) - return self.all_unfinished_list_grid( trans, **kwd ) - @web.expose def per_month_all( self, trans, **kwd ): params = util.Params( kwd ) message = '' @@ -414,37 +333,6 @@ class Jobs( BaseController ): email=util.sanitize_text( email ), jobs=jobs, message=message ) @web.expose - def user_for_month( self, trans, **kwd ): - if 'operation' in kwd: - operation = kwd['operation'].lower() - if operation == "job_info": - return trans.response.send_redirect( web.url_for( controller='jobs', - action='job_info', - **kwd ) ) - if operation == "tool_per_month": - # The received id is the job id, so we need to get the jobs tool_id. - job_id = kwd.get( 'id', None ) - job = get_job( trans, job_id ) - kwd[ 'tool_id' ] = job.tool_id - return trans.response.send_redirect( web.url_for( controller='jobs', - action='tool_per_month', - **kwd ) ) - if operation == "user_per_month": - # The received id is the job id, so we need to get the id of the user - # that submitted the job. - job_id = kwd.get( 'id', None ) - job = get_job( trans, job_id ) - kwd[ 'email' ] = None # For anonymous users - if job.history: - if job.history.user: - email = job.history.user.email - kwd[ 'email' ] = email - # TODO: handle libraries - return trans.response.send_redirect( web.url_for( controller='jobs', - action='user_per_month', - **kwd ) ) - return self.user_for_month_list_grid( trans, **kwd ) - @web.expose def per_tool( self, trans, **kwd ): params = util.Params( kwd ) message = '' @@ -484,37 +372,6 @@ class Jobs( BaseController ): jobs=jobs, message=message ) @web.expose - def tool_for_month( self, trans, **kwd ): - if 'operation' in kwd: - operation = kwd['operation'].lower() - if operation == "job_info": - return trans.response.send_redirect( web.url_for( controller='jobs', - action='job_info', - **kwd ) ) - if operation == "tool_per_month": - # The received id is the job id, so we need to get the jobs tool_id. - job_id = kwd.get( 'id', None ) - job = get_job( trans, job_id ) - kwd[ 'tool_id' ] = job.tool_id - return trans.response.send_redirect( web.url_for( controller='jobs', - action='tool_per_month', - **kwd ) ) - if operation == "user_per_month": - # The received id is the job id, so we need to get the id of the user - # that submitted the job. - job_id = kwd.get( 'id', None ) - job = get_job( trans, job_id ) - kwd[ 'email' ] = None # For anonymous users - if job.history: - if job.history.user: - email = job.history.user.email - kwd[ 'email' ] = email - # TODO: handle libraries - return trans.response.send_redirect( web.url_for( controller='jobs', - action='user_per_month', - **kwd ) ) - return self.tool_for_month_list_grid( trans, **kwd ) - @web.expose def job_info( self, trans, **kwd ): params = util.Params( kwd ) message = '' @@ -523,9 +380,8 @@ class Jobs( BaseController ): .filter( and_( model.Job.table.c.id == job_id, model.Job.table.c.session_id == model.GalaxySession.table.c.id, model.GalaxySession.table.c.user_id == model.User.table.c.id ) ) \ + .enable_eagerloads( False ) \ .one() - # TODO: for some reason the job_info.id is not the same as job_id in the template, so we need to pass job_id - # This needs to be fixed ASAP! return trans.fill_template( '/webapps/reports/job_info.mako', job_id=job_id, job_info=job_info, --- a/templates/webapps/reports/job_info.mako +++ b/templates/webapps/reports/job_info.mako @@ -18,7 +18,6 @@ </tr><tr><td>${job_info.state}</td> - ## TODO for some reason, job_info.id is not the job.id <td>${job_id}</td><td>${job_info.create_time}</td><td>${job_info.update_time}</td> --- a/templates/webapps/reports/jobs_specified_month_in_error.mako +++ b/templates/webapps/reports/jobs_specified_month_in_error.mako @@ -27,7 +27,7 @@ %endif <td>${job[0]}</td><td>${month_label} ${job[3]}, ${year_label}</td> - <td><a href="${h.url_for( controller='jobs', action='specified_date_in_error', specified_date=job[1] )}">${job[2]}</a></td> + <td><a href="${h.url_for( controller='jobs', action='specified_date_handler', operation='specified_date_in_error', specified_date=job[1] )}">${job[2]}</a></td></tr><% ctr += 1 %> %endfor --- a/templates/grid_common.mako +++ b/templates/grid_common.mako @@ -67,36 +67,6 @@ <input class='submit-image' type='image' src='${h.url_for('/static/images/mag_glass.png')}' alt='Filter'/></span></form> - ###################### - ## TODO: eliminate this elif condition when the categorical-filter style in grid_common.mako is fixed to that it no - ## longer mangles the request by eliminating parameters from it before it reaches the server. Since the categorical-filter - ## style is not used here, paging will not work... - ###################### - %elif isinstance( column, StateColumn ): - kwargs: ${kwargs}<br/> - <span id="${column.key}-filtering-criteria"> - %for i, filter in enumerate( column.get_accepted_filters() ): - <% - # HACK: we know that each filter will have only a single argument, so get that single argument. - for key, arg in filter.args.items(): - filter_key = key - filter_arg = arg - %> - %if i > 0: - | - %endif - %if column.key in cur_filter_dict and column.key in filter.args and cur_filter_dict[column.key] == filter.args[column.key]: - <span class="categorical-filter ${column.key}-filter current-filter">${filter.label}</span> - %else: - <% - my_dict = {} - my_dict.update( kwargs ) - my_dict.update( filter.get_url_args() ) - %> - <a href="${url( my_dict )}" filter_key="${filter_key}" filter_val="${filter_arg}">${filter.label}</a> - %endif - %endfor - </span> %else: <span id="${column.key}-filtering-criteria"> %for i, filter in enumerate( column.get_accepted_filters() ): --- a/templates/grid_base.mako +++ b/templates/grid_base.mako @@ -161,16 +161,6 @@ }); // Initialize categorical filters. - // #################### - // TODO: This style is used in grid_common.mako to wrap the links created for certain GridColumn - // subclasses ( e.g., DeletedColumn, StateColumn, etc ) where the link labels are generated in the - // class's get_accepted_filters() method. The problem is that when the link is clicked, this style - // will eliminate all request parameters except for those that are included in the cur_filter_dict - // dictionary that is used to build the url_args variable in this template. This process needs to - // be corrected so that the only changes made to the request are updating the values of parameters - // in the request with the new values obtained from cur_filter_dict, leaving all remaining request - // parameters alone. There is another related TODO in the set_categorical_filter() function below. - // #################### $('.categorical-filter > a').each( function() { $(this).click( function() { var filter_key = $(this).attr('filter_key'); @@ -407,11 +397,6 @@ } // Set new value for categorical filter. - // #################### - // TODO: this function mangles the initial request by eliminating many of the request parameters - // before calling update_grid(). This needs to be fixed - see the TODO in the categorical-filter - // style above. - // #################### function set_categorical_filter(name, new_value) { // Update filter hyperlinks to reflect new filter value. var category_filter = categorical_filters[name]; --- a/templates/webapps/reports/index.mako +++ b/templates/webapps/reports/index.mako @@ -61,6 +61,10 @@ </%def><%def name="left_panel()"> + <% + from datetime import datetime + from time import mktime, strftime, localtime + %><div class="unified-panel-header" unselectable="on"><div class='unified-panel-header-inner'>Reports</div></div> @@ -73,10 +77,10 @@ </div><div class="toolSectionBody"><div class="toolSectionBg"> - <div class="toolTitle"><a target="galaxy_main" href="${h.url_for( controller='jobs', action='today_all' )}">Today's jobs</a></div> + <div class="toolTitle"><a target="galaxy_main" href="${h.url_for( controller='jobs', action='specified_date_handler', specified_date=datetime.utcnow().strftime( "%Y-%m-%d" ) )}">Today's jobs</a></div><div class="toolTitle"><a target="galaxy_main" href="${h.url_for( controller='jobs', action='specified_month_all' )}">Jobs per day this month</a></div><div class="toolTitle"><a target="galaxy_main" href="${h.url_for( controller='jobs', action='specified_month_in_error' )}">Jobs in error per day this month</a></div> - <div class="toolTitle"><a target="galaxy_main" href="${h.url_for( controller='jobs', action='all_unfinished' )}">All unfinished jobs</a></div> + <div class="toolTitle"><a target="galaxy_main" href="${h.url_for( controller='jobs', action='specified_date_handler', operation='unfinished' )}">All unfinished jobs</a></div><div class="toolTitle"><a target="galaxy_main" href="${h.url_for( controller='jobs', action='per_month_all' )}">Jobs per month</a></div><div class="toolTitle"><a target="galaxy_main" href="${h.url_for( controller='jobs', action='per_month_in_error' )}">Jobs in error per month</a></div><div class="toolTitle"><a target="galaxy_main" href="${h.url_for( controller='jobs', action='per_user' )}">Jobs per user</a></div> --- a/templates/webapps/reports/jobs_tool_per_month.mako +++ b/templates/webapps/reports/jobs_tool_per_month.mako @@ -25,7 +25,7 @@ <tr class="tr"> %endif <td>${job[2]} ${job[3]}</td> - <td><a href="${h.url_for( controller='jobs', action='tool_for_month', tool_id=tool_id, specified_date=job[0]+'-01' )}">${job[1]}</a></td> + <td><a href="${h.url_for( controller='jobs', action='specified_date_handler', operation='tool_for_month', tool_id=tool_id, specified_date=job[0] )}">${job[1]}</a></td></tr><% ctr += 1 %> %endfor --- a/templates/webapps/reports/jobs_specified_month_all.mako +++ b/templates/webapps/reports/jobs_specified_month_all.mako @@ -31,7 +31,7 @@ <td>${month_label} ${job[5]}, ${year_label}</td><td>${job[2]}</td><td>${job[3]}</td> - <td><a href="${h.url_for( controller='jobs', action='specified_date', specified_date=job[1], webapp='reports' )}">${job[4]}</a></td> + <td><a href="${h.url_for( controller='jobs', action='specified_date_handler', specified_date=job[1], webapp='reports' )}">${job[4]}</a></td></tr><% ctr += 1 %> %endfor

1 0

galaxy-dist commit ffd110701ba5: Remove debugging stmts from cufftools wrappers.
by commits-noreply＠bitbucket.org 08 Jun '10

08 Jun '10

# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User jeremy goecks <jeremy.goecks(a)emory.edu> # Date 1276004899 14400 # Node ID ffd110701ba557277eb0f6476145f3850a1544d1 # Parent 6612433f8b85047033257bf8d66375fa7839b9e1 Remove debugging stmts from cufftools wrappers. --- a/tools/ngs_rna/cuffdiff_wrapper.py +++ b/tools/ngs_rna/cuffdiff_wrapper.py @@ -68,10 +68,7 @@ def __main__(): cmd += ( " --num-importance-samples %i" % int ( options.num_importance_samples ) ) if options.max_mle_iterations: cmd += ( " --max-mle-iterations %i" % int ( options.max_mle_iterations ) ) - - # Output/debugging. - print cmd - + # Add inputs. cmd += " " + options.inputA + " " + options.input1 + " " + options.input2 --- a/tools/ngs_rna/cuffcompare_wrapper.py +++ b/tools/ngs_rna/cuffcompare_wrapper.py @@ -43,7 +43,6 @@ def __main__(): # Add input files. # Need to symlink inputs so that output files are written to temp directory. - print options.input1 input1_file_name = tmp_output_dir + "/input1" os.symlink( options.input1, input1_file_name ) cmd += " %s" % input1_file_name --- a/tools/ngs_rna/cufflinks_wrapper.py +++ b/tools/ngs_rna/cufflinks_wrapper.py @@ -62,9 +62,6 @@ def __main__(): if options.max_mle_iterations: cmd += ( " --max-mle-iterations %i" % int ( options.max_mle_iterations ) ) - # Output/debugging. - print cmd - # Add input files. cmd += " " + options.input

1 0

galaxy-dist commit f71716f286ee: Add GFF support to GOPS subtract tool and updated functional tests. Using the GFF-->BED converter is lossy as GFF has more attributes/features than BED, so it's necessary to directly support GFF. Basic approach used is to modify interval coordinates during reading and writing while not changing the middle, computational steps; this approach can be used to provide GFF support for any tool that uses bx-python to operate on intervals.
by commits-noreply＠bitbucket.org 08 Jun '10

08 Jun '10

# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User jeremy goecks <jeremy.goecks(a)emory.edu> # Date 1275942526 14400 # Node ID f71716f286ee0c2e807c22dff2abd54815f14554 # Parent 37f4420ba3fcf9eb0fd097cf812ad91cc2824f99 Add GFF support to GOPS subtract tool and updated functional tests. Using the GFF-->BED converter is lossy as GFF has more attributes/features than BED, so it's necessary to directly support GFF. Basic approach used is to modify interval coordinates during reading and writing while not changing the middle, computational steps; this approach can be used to provide GFF support for any tool that uses bx-python to operate on intervals. --- a/tools/new_operations/gops_subtract.py +++ b/tools/new_operations/gops_subtract.py @@ -8,6 +8,7 @@ usage: %prog bed_file_1 bed_file_2 out_f -2, --cols2=N,N,N,N: Columns for start, end, strand in second file -m, --mincols=N: Require this much overlap (default 1bp) -p, --pieces: just print pieces of second set (after padding) + -G, --gff: inputs are GFF format, meaning start and end coordinates are 1-based, closed interval """ from galaxy import eggs import pkg_resources @@ -19,6 +20,7 @@ from bx.intervals.io import * from bx.intervals.operations.subtract import * from bx.cookbook import doc_optparse from galaxy.tools.util.galaxyops import * +from galaxy.tools.util.gff_util import * assert sys.version_info[:2] >= ( 2, 4 ) @@ -33,17 +35,24 @@ def main(): chr_col_2, start_col_2, end_col_2, strand_col_2 = parse_cols_arg( options.cols2 ) if options.mincols: mincols = int( options.mincols ) pieces = bool( options.pieces ) + gff_format = bool( options.gff ) in_fname, in2_fname, out_fname = args except: doc_optparse.exception() - g1 = NiceReaderWrapper( fileinput.FileInput( in_fname ), + # Set reader to handle either GFF or default format. + if gff_format: + reader_wrapper = GFFReaderWrapper + else: + reader_wrapper = NiceReaderWrapper + + g1 = reader_wrapper( fileinput.FileInput( in_fname ), chrom_col=chr_col_1, start_col=start_col_1, end_col=end_col_1, strand_col=strand_col_1, fix_strand=True ) - g2 = NiceReaderWrapper( fileinput.FileInput( in2_fname ), + g2 = reader_wrapper( fileinput.FileInput( in2_fname ), chrom_col=chr_col_2, start_col=start_col_2, end_col=end_col_2, @@ -55,6 +64,8 @@ def main(): try: for line in subtract( [g1,g2], pieces=pieces, mincols=mincols ): if type( line ) is GenomicInterval: + if gff_format: + line = convert_to_gff_coordinates( line ) out_file.write( "%s\n" % "\t".join( line.fields ) ) else: out_file.write( "%s\n" % line ) --- /dev/null +++ b/test-data/gops_subtract_in2.gff @@ -0,0 +1,500 @@ +chr13 Cufflinks transcript 3633324 3651020 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3633324 3633421 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "1"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3641311 3641498 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "2"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3642721 3642871 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "3"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3644162 3644296 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "4"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3648565 3648756 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "5"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks exon 3649426 3651020 1000 + . gene_id "Asb13"; transcript_id "Asb13_dup1"; exon_number "6"; FPKM "12.1778141008"; frac "1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov "0.778296"; +chr13 Cufflinks transcript 3802139 3803564 1000 - . gene_id "Calml3"; transcript_id "Calml3"; FPKM "4.8864843670"; frac "1.000000"; conf_lo "2.480113"; conf_hi "7.292856"; cov "0.312300"; +chr13 Cufflinks exon 3802139 3803564 1000 - . gene_id "Calml3"; transcript_id "Calml3"; exon_number "1"; FPKM "4.8864843670"; frac "1.000000"; conf_lo "2.480113"; conf_hi "7.292856"; cov "0.312300"; +chr13 Cufflinks transcript 3881809 3892824 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3881809 3883719 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "1"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3884049 3884235 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "2"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3885294 3885464 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "3"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3885784 3886041 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "4"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3886617 3886693 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "5"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3886817 3886913 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "6"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3887224 3887286 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "7"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3887601 3887768 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "8"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3888117 3888224 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "9"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks exon 3892539 3892824 1000 - . gene_id "Net1"; transcript_id "Net1_dup1"; exon_number "10"; FPKM "0.8888261462"; frac "1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov "0.056806"; +chr13 Cufflinks transcript 4131873 4149877 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4131873 4132082 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "1"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4134449 4134531 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "2"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4135848 4136013 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "3"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4136380 4136489 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "4"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4141373 4141495 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "5"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4142464 4142541 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "6"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4143536 4143652 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "7"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4144452 4144619 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "8"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks exon 4149761 4149877 1000 - . gene_id "Akr1c18"; transcript_id "Akr1c18"; exon_number "9"; FPKM "1.0813891587"; frac "1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov "0.069113"; +chr13 Cufflinks transcript 4232986 4247605 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4232986 4233100 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "1"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4235335 4235502 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "2"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4236282 4236398 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "3"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4237640 4237717 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "4"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4238214 4238336 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "5"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4241798 4241907 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "6"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4242173 4242338 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "7"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4246049 4246131 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "8"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks exon 4247324 4247605 1000 + . gene_id "Akr1c19"; transcript_id "Akr1c19"; exon_number "9"; FPKM "2.3810296989"; frac "1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov "0.152174"; +chr13 Cufflinks transcript 4247981 4249023 1000 + . gene_id "Marcksl1-ps4"; transcript_id "Marcksl1-ps4"; FPKM "25.7982124751"; frac "1.000000"; conf_lo "19.333089"; conf_hi "32.263336"; cov "1.648789"; +chr13 Cufflinks exon 4247981 4249023 1000 + . gene_id "Marcksl1-ps4"; transcript_id "Marcksl1-ps4"; exon_number "1"; FPKM "25.7982124751"; frac "1.000000"; conf_lo "19.333089"; conf_hi "32.263336"; cov "1.648789"; +chr13 Cufflinks transcript 4591736 4608410 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4591736 4592544 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "1"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4592808 4592890 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "2"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4594317 4594400 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "3"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4594906 4594978 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "4"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4596731 4596828 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "5"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4598016 4598138 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "6"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4600464 4600541 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "7"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4601927 4602043 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "8"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4606637 4606804 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "9"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks exon 4608331 4608410 1000 - . gene_id "Akr1e1"; transcript_id "Akr1e1"; exon_number "10"; FPKM "11.3445908394"; frac "1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov "0.725044"; +chr13 Cufflinks transcript 5860735 5869639 1000 + . gene_id "Klf6"; transcript_id "Klf6"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247"; +chr13 Cufflinks exon 5860735 5861088 1000 + . gene_id "Klf6"; transcript_id "Klf6"; exon_number "1"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247"; +chr13 Cufflinks exon 5864014 5864590 1000 + . gene_id "Klf6"; transcript_id "Klf6"; exon_number "2"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247"; +chr13 Cufflinks exon 5865885 5866008 1000 + . gene_id "Klf6"; transcript_id "Klf6"; exon_number "3"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247"; +chr13 Cufflinks exon 5866478 5869639 1000 + . gene_id "Klf6"; transcript_id "Klf6"; exon_number "4"; FPKM "24.6944637170"; frac "1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247"; +chr13 Cufflinks transcript 3537321 3565507 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3537321 3537589 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "1"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3548109 3548216 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "2"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3550235 3550334 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "3"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3553658 3553792 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "4"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3555560 3555758 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "5"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3556172 3556303 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "6"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3559238 3559337 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "7"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3561112 3561283 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "8"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3563786 3563930 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "9"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3564105 3564159 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "10"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks exon 3564242 3565507 1000 + . gene_id "Gdi2"; transcript_id "Gdi2"; exon_number "11"; FPKM "76.8556374088"; frac "0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918"; +chr13 Cufflinks transcript 3565281 3610354 1000 - . gene_id "BC016423"; transcript_id "BC016423"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3565281 3565913 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "1"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3566164 3566278 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "2"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3566682 3566863 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "3"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3567998 3568103 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "4"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3568734 3568887 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "5"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3569558 3569683 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "6"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3572733 3576446 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "7"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3580998 3581439 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "8"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3583746 3584619 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "9"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3587544 3587780 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "10"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3589187 3589894 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "11"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3593377 3593439 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "12"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3593539 3593611 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "13"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3594743 3594846 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "14"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3596023 3596123 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "15"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3598898 3598997 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "16"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3599083 3599102 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "17"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3599185 3599308 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "18"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3599438 3599580 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "19"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks exon 3610036 3610354 1000 - . gene_id "BC016423"; transcript_id "BC016423"; exon_number "20"; FPKM "2.1505644542"; frac "0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov "0.137445"; +chr13 Cufflinks transcript 8202155 8759554 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8202155 8202566 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "1"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8558350 8558436 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "2"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8568913 8569820 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "3"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8671651 8671765 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "4"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8696866 8697034 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "5"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8700826 8700977 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "6"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8712846 8713014 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "7"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8731036 8731217 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "8"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8751819 8751997 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "9"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks exon 8756472 8759554 1000 + . gene_id "Adarb2"; transcript_id "Adarb2"; exon_number "10"; FPKM "0.3097233856"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov "0.019795"; +chr13 Cufflinks transcript 8884852 8891641 1000 + . gene_id "Idi1"; transcript_id "Idi1"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks exon 8884852 8885242 1000 + . gene_id "Idi1"; transcript_id "Idi1"; exon_number "1"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks exon 8885978 8886150 1000 + . gene_id "Idi1"; transcript_id "Idi1"; exon_number "2"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks exon 8886731 8886823 1000 + . gene_id "Idi1"; transcript_id "Idi1"; exon_number "3"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks exon 8887169 8887299 1000 + . gene_id "Idi1"; transcript_id "Idi1"; exon_number "4"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks exon 8889564 8891641 1000 + . gene_id "Idi1"; transcript_id "Idi1"; exon_number "5"; FPKM "8.4668138233"; frac "1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122"; +chr13 Cufflinks transcript 8802214 8870288 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8802214 8805192 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "1"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8819109 8819223 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "2"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8819657 8819791 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "3"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8834543 8834684 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "4"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8836029 8836269 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "5"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8841976 8842052 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "6"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8844033 8844077 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "7"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8846861 8846932 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "8"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8848780 8848915 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "9"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8852916 8852980 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "10"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8853246 8853341 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "11"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8856078 8856174 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "12"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8860334 8860511 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "13"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks exon 8870116 8870288 1000 - . gene_id "Wdr37"; transcript_id "Wdr37_dup1"; exon_number "14"; FPKM "10.9531067880"; frac "0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov "0.700024"; +chr13 Cufflinks transcript 8849725 8870288 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks exon 8849725 8852980 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "1"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks exon 8853246 8853341 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "2"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks exon 8856078 8856174 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "3"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks exon 8860334 8860511 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "4"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks exon 8870116 8870288 157 - . gene_id "Wdr37"; transcript_id "Wdr37_dup2"; exon_number "5"; FPKM "1.7230711203"; frac "0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov "0.110123"; +chr13 Cufflinks transcript 8971724 8995258 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8971724 8972520 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "1"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8973410 8973553 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "2"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8974191 8974256 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "3"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8976482 8976679 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "4"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8977774 8977874 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "5"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8978675 8978726 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "6"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8979148 8979225 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "7"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8984455 8984565 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "8"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8984884 8984973 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "9"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8986495 8986560 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "10"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8987002 8987193 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "11"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8988299 8988391 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "12"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8989944 8990044 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "13"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8990961 8991097 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "14"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8991178 8991281 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "15"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8991891 8992061 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "16"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks exon 8995195 8995258 1000 - . gene_id "Gtpbp4"; transcript_id "Gtpbp4"; exon_number "17"; FPKM "12.4340841673"; frac "1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov "0.794674"; +chr13 Cufflinks transcript 6547403 6579395 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6547403 6547475 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "1"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6548826 6548928 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "2"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6551880 6551986 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "3"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6552428 6552579 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "4"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6554600 6554714 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "5"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6554798 6554894 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "6"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6555788 6555948 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "7"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6557008 6557134 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "8"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6557402 6557490 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "9"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6558601 6558729 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "10"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6559276 6559389 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "11"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6559848 6559944 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "12"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6561199 6561333 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "13"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6562622 6562760 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "14"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6564237 6564353 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "15"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6566596 6566728 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "16"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6567910 6568030 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "17"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6568145 6568221 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "18"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6568446 6568611 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "19"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6569848 6569948 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "20"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6572287 6572407 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "21"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6573606 6573677 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "22"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6574263 6574375 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "23"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6576636 6576761 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "24"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6577687 6577832 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "25"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6578664 6578766 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "26"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks exon 6578896 6579395 1000 + . gene_id "Pitrm1"; transcript_id "Pitrm1"; exon_number "27"; FPKM "4.2490599857"; frac "0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov "0.271562"; +chr13 Cufflinks transcript 6579120 6647970 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6579120 6580838 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "1"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6581649 6581751 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "2"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6583847 6583946 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "3"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6585726 6585837 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "4"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6586298 6586359 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "5"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6587735 6587899 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "6"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6597105 6597257 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "7"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6597985 6598072 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "8"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6599842 6599912 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "9"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6601959 6602105 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "10"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6602325 6602394 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "11"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6602645 6602709 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "12"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6604202 6604327 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "13"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6604882 6604974 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "14"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6613950 6614045 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "15"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6618421 6618529 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "16"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6618766 6618810 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "17"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6620132 6620297 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "18"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6621153 6621342 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "19"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6624382 6624459 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "20"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6635171 6635244 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "21"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks exon 6647817 6647970 1000 - . gene_id "Pfkp"; transcript_id "Pfkp"; exon_number "22"; FPKM "66.8416627010"; frac "0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915"; +chr13 Cufflinks transcript 9093151 9172336 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9093151 9093426 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "1"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9121354 9121472 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "2"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9123149 9123208 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "3"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9136025 9136172 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "4"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9136401 9136547 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "5"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9143000 9143078 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "6"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9144628 9144764 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "7"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9146647 9146750 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "8"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9149072 9149182 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "9"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9150111 9150164 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "10"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9150261 9150470 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "11"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9157369 9157475 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "12"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9157797 9158048 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "13"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9163921 9163966 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "14"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9165563 9165727 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "15"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9167924 9168048 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "16"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9168144 9168252 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "17"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks exon 9169898 9172336 1000 + . gene_id "Larp4b"; transcript_id "Larp4b"; exon_number "18"; FPKM "14.5987536424"; frac "1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov "0.933020"; +chr13 Cufflinks transcript 9275772 9668171 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9275772 9276312 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "1"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9492351 9492422 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "2"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9505825 9505935 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "3"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9532498 9532623 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "4"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9535902 9536111 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "5"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9549430 9549564 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "6"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9550992 9551111 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "7"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9552520 9552717 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "8"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9559917 9560008 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "9"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9562360 9562470 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "10"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9567077 9567200 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "11"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9567547 9567656 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "12"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9567837 9567939 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "13"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9570296 9570360 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "14"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9574380 9574473 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "15"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9574608 9574727 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "16"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9576050 9576164 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "17"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9583251 9583267 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "18"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9591990 9592004 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "19"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9600632 9600742 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "20"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9603735 9603871 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "21"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9605569 9605777 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "22"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9608190 9608304 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "23"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9609943 9610144 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "24"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9613593 9613702 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "25"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9614991 9615071 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "26"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9621125 9621248 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "27"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9621828 9621949 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "28"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9623003 9623114 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "29"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9623204 9623313 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "30"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9627219 9627349 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "31"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9633968 9634136 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "32"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9636341 9636511 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "33"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9646225 9646286 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "34"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9653849 9653906 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "35"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9655883 9655957 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "36"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9658491 9658665 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "37"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9661383 9661506 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "38"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks exon 9665024 9668171 1000 + . gene_id "Dip2c"; transcript_id "Dip2c"; exon_number "39"; FPKM "6.8147483305"; frac "1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537"; +chr13 Cufflinks transcript 9684082 9764454 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9684082 9686230 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "1"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9688309 9688494 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "2"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9688698 9688970 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "3"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9689692 9689760 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "4"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9690149 9690356 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "5"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9692676 9692794 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "6"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9693515 9693592 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "7"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9694375 9694430 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "8"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9694985 9695072 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "9"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9696890 9696982 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "10"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9697874 9697951 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "11"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9720019 9720178 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "12"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9734578 9734712 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "13"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks exon 9764301 9764454 1000 - . gene_id "Zmynd11"; transcript_id "Zmynd11"; exon_number "14"; FPKM "45.8208152687"; frac "1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov "2.928453"; +chr13 Cufflinks transcript 9875859 10360049 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks exon 9875859 9878263 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "1"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks exon 10027699 10027745 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "2"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks exon 10121473 10121535 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "3"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks exon 10223891 10224003 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "4"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks exon 10359510 10360049 1000 - . gene_id "Chrm3"; transcript_id "Chrm3"; exon_number "5"; FPKM "1.0668249949"; frac "1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182"; +chr13 Cufflinks transcript 11645370 12199212 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11645370 11646878 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "1"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11647698 11647749 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "2"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11648865 11648965 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "3"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11650314 11650378 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "4"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11652791 11652947 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "5"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11659115 11659249 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "6"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11660739 11660885 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "7"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11664513 11664573 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "8"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11670047 11670180 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "9"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11676403 11676445 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "10"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11677675 11677805 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "11"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11679483 11679704 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "12"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11680409 11680495 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "13"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11683492 11683639 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "14"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11685360 11685424 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "15"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11686949 11688246 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "16"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11689338 11689419 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "17"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11690773 11690877 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "18"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11694026 11694154 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "19"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11695952 11696040 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "20"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11697423 11697503 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "21"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11710874 11710947 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "22"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11711737 11711813 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "23"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11713582 11713661 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "24"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11715169 11715268 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "25"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11727792 11727845 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "26"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11730699 11730750 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "27"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11732541 11732644 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "28"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11736071 11736167 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "29"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11738760 11738872 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "30"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11739969 11740004 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "31"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11741997 11742131 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "32"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11746633 11746692 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "33"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11747885 11748055 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "34"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11749300 11749392 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "35"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11751217 11751304 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "36"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11752368 11752608 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "37"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11754333 11754653 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "38"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11758148 11758278 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "39"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11759346 11759427 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "40"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11761080 11761318 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "41"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11762196 11762256 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "42"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11768465 11768514 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "43"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11773233 11773354 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "44"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11776729 11776793 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "45"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11779210 11779325 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "46"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11780157 11780280 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "47"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11782559 11782634 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "48"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11784906 11784983 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "49"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11792515 11792652 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "50"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11793046 11793135 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "51"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11795764 11795842 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "52"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11797902 11798065 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "53"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11798849 11798989 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "54"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11800049 11800139 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "55"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11800289 11800509 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "56"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11802184 11802353 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "57"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11804402 11804522 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "58"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11806784 11806889 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "59"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11809208 11809394 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "60"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11810637 11810772 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "61"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11814018 11814121 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "62"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11814998 11815130 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "63"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11816530 11816644 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "64"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11819124 11819397 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "65"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11822610 11822753 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "66"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11823913 11824018 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "67"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11827738 11827938 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "68"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11829989 11830787 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "69"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11834121 11834347 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "70"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11837445 11837531 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "71"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11837864 11838026 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "72"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11839755 11839915 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "73"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11841703 11841817 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "74"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11842956 11843308 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "75"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11844463 11844671 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "76"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11851938 11852112 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "77"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11853494 11853702 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "78"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11862119 11862266 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "79"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11864687 11864846 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "80"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11871452 11871535 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "81"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11877305 11877408 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "82"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11882526 11882630 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "83"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11884936 11885152 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "84"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11886809 11887001 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "85"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11891949 11892190 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "86"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11893405 11893538 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "87"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11894074 11894192 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "88"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11903150 11903245 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "89"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11916541 11916676 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "90"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11919801 11919984 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "91"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11921824 11921945 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "92"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11926191 11926355 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "93"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11943325 11943481 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "94"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11945383 11945457 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "95"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11960384 11960480 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "96"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11961384 11961483 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "97"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11971742 11971854 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "98"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11975312 11975390 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "99"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11977731 11977805 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "100"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11983101 11983115 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "101"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 11995485 11995505 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "102"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 12010578 12010682 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "103"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 12038150 12038269 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "104"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks exon 12198666 12199212 1000 - . gene_id "Ryr2"; transcript_id "Ryr2"; exon_number "105"; FPKM "2.6886045730"; frac "1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831"; +chr13 Cufflinks transcript 12279086 12350267 1000 - . gene_id "Mtr"; transcript_id "Mtr"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12279086 12279358 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "1"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12280308 12280420 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "2"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12281614 12281806 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "3"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12282471 12282671 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "4"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12285881 12286077 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "5"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12287505 12287660 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "6"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12290180 12290255 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "7"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12291313 12291411 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "8"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12292464 12292545 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "9"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12297010 12297130 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "10"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12297557 12297624 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "11"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12304655 12304755 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "12"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12304938 12305045 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "13"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12307680 12307832 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "14"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12309077 12309166 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "15"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12313689 12313829 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "16"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12314422 12314538 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "17"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12317729 12317908 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "18"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12319951 12320136 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "19"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12323212 12323352 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "20"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12325169 12325281 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "21"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12327724 12327803 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "22"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12330248 12330315 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "23"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12331916 12331977 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "24"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12333832 12333932 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "25"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12336202 12336296 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "26"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12336822 12336884 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "27"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12339586 12339692 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "28"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12340160 12340252 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "29"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12342112 12342181 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "30"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12342869 12342958 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "31"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12346031 12346245 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "32"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks exon 12350129 12350267 1000 - . gene_id "Mtr"; transcript_id "Mtr"; exon_number "33"; FPKM "0.2064822571"; frac "1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196"; +chr13 Cufflinks transcript 12361694 12432999 1000 - . gene_id "Actn2"; transcript_id "Actn2"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12361694 12361919 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "1"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12363045 12363203 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "2"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12364966 12365031 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "3"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12367345 12367491 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "4"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12368630 12368809 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "5"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12369666 12369800 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "6"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12371061 12371243 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "7"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12372696 12372836 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "8"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12374782 12374890 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "9"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12380774 12380924 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "10"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12382941 12383088 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "11"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12383927 12384157 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "12"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12386577 12386669 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "13"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12388742 12388827 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "14"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12393202 12393283 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "15"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12396581 12396659 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "16"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12398541 12398628 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "17"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12401167 12401253 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "18"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12401862 12401981 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "19"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12403114 12403228 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "20"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks exon 12432642 12432999 1000 - . gene_id "Actn2"; transcript_id "Actn2"; exon_number "21"; FPKM "3.6809752507"; frac "1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255"; +chr13 Cufflinks transcript 12487642 12531160 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12487642 12487737 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "1"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12488007 12488180 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "2"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12488689 12488905 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "3"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12491170 12491311 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "4"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12493317 12493418 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "5"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12493717 12493857 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "6"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12494981 12495192 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "7"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12495412 12495545 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "8"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12497155 12497257 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "9"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12498290 12498400 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "10"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12498792 12498909 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "11"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12499784 12499891 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "12"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12500921 12501016 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "13"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12501476 12501564 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "14"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12502663 12502874 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "15"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12503487 12503608 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "16"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12504312 12504503 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "17"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12505492 12505675 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "18"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12505779 12505915 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "19"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12506640 12506832 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "20"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12507684 12507853 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "21"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12508218 12508376 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "22"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12509727 12509969 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "23"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12510365 12510496 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "24"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12513309 12513412 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "25"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12513545 12513688 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "26"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12514308 12514426 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "27"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12514508 12514629 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "28"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12515901 12516029 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "29"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12516887 12517117 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "30"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12518421 12518547 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "31"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12519029 12519189 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "32"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12522034 12522080 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "33"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12522408 12522531 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "34"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12523178 12523318 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "35"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12523947 12524239 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "36"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12524896 12525046 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "37"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12525879 12526037 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "38"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12526184 12526318 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "39"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12526454 12526558 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "40"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12526641 12526809 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "41"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12527314 12527468 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "42"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12527937 12528095 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "43"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12530101 12530209 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "44"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks exon 12530856 12531160 1000 + . gene_id "Heatr1"; transcript_id "Heatr1"; exon_number "45"; FPKM "1.4963259669"; frac "1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov "0.095632"; +chr13 Cufflinks transcript 12531686 12553757 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12531686 12533261 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "1"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12539414 12539579 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "2"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12540686 12540774 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "3"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12543668 12543694 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "4"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12544989 12545045 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "5"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12545552 12545671 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "6"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12547002 12547212 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "7"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12548611 12548699 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "8"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12551441 12551583 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "9"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks exon 12553694 12553757 1000 - . gene_id "Lgals8"; transcript_id "Lgals8"; exon_number "10"; FPKM "6.5640329997"; frac "1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov "0.419514"; +chr13 Cufflinks transcript 12569175 12612715 1000 - . gene_id "Edaradd"; transcript_id "Edaradd"; FPKM "1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi "2.871156"; cov "0.112406"; +chr13 Cufflinks exon 12569175 12570841 1000 - . gene_id "Edaradd"; transcript_id "Edaradd"; exon_number "1"; FPKM "1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi "2.871156"; cov "0.112406"; +chr13 Cufflinks exon 12575867 12575912 1000 - . gene_id "Edaradd"; transcript_id "Edaradd"; exon_number "2"; FPKM "1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi "2.871156"; cov "0.112406"; --- /dev/null +++ b/test-data/gops_subtract_in1.gff @@ -0,0 +1,500 @@ +chr13 Cufflinks transcript 3405463 3405542 1000 . . gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914"; +chr13 Cufflinks exon 3405463 3405542 1000 . . gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; exon_number "1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914"; +chr13 Cufflinks transcript 3473337 3473372 1000 . . gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000"; +chr13 Cufflinks exon 3473337 3473372 1000 . . gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; exon_number "1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000"; +chr13 Cufflinks transcript 3490319 3490350 1000 . . gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250"; +chr13 Cufflinks exon 3490319 3490350 1000 . . gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; exon_number "1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250"; +chr13 Cufflinks transcript 3565855 3566203 1000 - . gene_id "CUFF.50195"; transcript_id "CUFF.50195.1"; FPKM "29.8710998584"; frac "1.000000"; conf_lo "7.290671"; conf_hi "52.451529"; cov "1.909091"; +chr13 Cufflinks exon 3565855 3565913 1000 - . gene_id "CUFF.50195"; transcript_id "CUFF.50195.1"; exon_number "1"; FPKM "29.8710998584"; frac "1.000000"; conf_lo "7.290671"; conf_hi "52.451529"; cov "1.909091"; +chr13 Cufflinks exon 3566164 3566203 1000 - . gene_id "CUFF.50195"; transcript_id "CUFF.50195.1"; exon_number "2"; FPKM "29.8710998584"; frac "1.000000"; conf_lo "7.290671"; conf_hi "52.451529"; cov "1.909091"; +chr13 Cufflinks transcript 3566475 3566560 1000 . . gene_id "CUFF.50197"; transcript_id "CUFF.50197.1"; FPKM "14.7370708604"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.753975"; cov "0.941860"; +chr13 Cufflinks exon 3566475 3566560 1000 . . gene_id "CUFF.50197"; transcript_id "CUFF.50197.1"; exon_number "1"; FPKM "14.7370708604"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.753975"; cov "0.941860"; +chr13 Cufflinks transcript 3566664 3566942 1000 . . gene_id "CUFF.50199"; transcript_id "CUFF.50199.1"; FPKM "31.7874813134"; frac "1.000000"; conf_lo "17.911934"; conf_hi "45.663029"; cov "2.031569"; +chr13 Cufflinks exon 3566664 3566942 1000 . . gene_id "CUFF.50199"; transcript_id "CUFF.50199.1"; exon_number "1"; FPKM "31.7874813134"; frac "1.000000"; conf_lo "17.911934"; conf_hi "45.663029"; cov "2.031569"; +chr13 Cufflinks transcript 3568042 3568068 1000 . . gene_id "CUFF.50201"; transcript_id "CUFF.50201.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3568042 3568068 1000 . . gene_id "CUFF.50201"; transcript_id "CUFF.50201.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3569564 3569626 1000 . . gene_id "CUFF.50203"; transcript_id "CUFF.50203.1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143"; +chr13 Cufflinks exon 3569564 3569626 1000 . . gene_id "CUFF.50203"; transcript_id "CUFF.50203.1"; exon_number "1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143"; +chr13 Cufflinks transcript 3594171 3594199 1000 . . gene_id "CUFF.50205"; transcript_id "CUFF.50205.1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069"; +chr13 Cufflinks exon 3594171 3594199 1000 . . gene_id "CUFF.50205"; transcript_id "CUFF.50205.1"; exon_number "1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069"; +chr13 Cufflinks transcript 3606116 3613028 1000 - . gene_id "CUFF.50207"; transcript_id "CUFF.50207.1"; FPKM "19.6171377865"; frac "1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov "1.253750"; +chr13 Cufflinks exon 3606116 3606146 1000 - . gene_id "CUFF.50207"; transcript_id "CUFF.50207.1"; exon_number "1"; FPKM "19.6171377865"; frac "1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov "1.253750"; +chr13 Cufflinks exon 3612965 3613028 1000 - . gene_id "CUFF.50207"; transcript_id "CUFF.50207.1"; exon_number "2"; FPKM "19.6171377865"; frac "1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov "1.253750"; +chr13 Cufflinks transcript 3603507 3603533 1000 . . gene_id "CUFF.50209"; transcript_id "CUFF.50209.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3603507 3603533 1000 . . gene_id "CUFF.50209"; transcript_id "CUFF.50209.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3604709 3604735 1000 . . gene_id "CUFF.50211"; transcript_id "CUFF.50211.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 3604709 3604735 1000 . . gene_id "CUFF.50211"; transcript_id "CUFF.50211.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 3612524 3612550 1000 . . gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813"; +chr13 Cufflinks exon 3612524 3612550 1000 . . gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; exon_number "1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813"; +chr13 Cufflinks transcript 3639250 3639290 1000 . . gene_id "CUFF.50215"; transcript_id "CUFF.50215.1"; FPKM "30.9119047316"; frac "1.000000"; conf_lo "0.000000"; conf_hi "66.605898"; cov "1.975610"; +chr13 Cufflinks exon 3639250 3639290 1000 . . gene_id "CUFF.50215"; transcript_id "CUFF.50215.1"; exon_number "1"; FPKM "30.9119047316"; frac "1.000000"; conf_lo "0.000000"; conf_hi "66.605898"; cov "1.975610"; +chr13 Cufflinks transcript 3649635 3649777 1000 . . gene_id "CUFF.50217"; transcript_id "CUFF.50217.1"; FPKM "14.7714230069"; frac "1.000000"; conf_lo "1.559461"; conf_hi "27.983385"; cov "0.944056"; +chr13 Cufflinks exon 3649635 3649777 1000 . . gene_id "CUFF.50217"; transcript_id "CUFF.50217.1"; exon_number "1"; FPKM "14.7714230069"; frac "1.000000"; conf_lo "1.559461"; conf_hi "27.983385"; cov "0.944056"; +chr13 Cufflinks transcript 3649976 3650072 1000 . . gene_id "CUFF.50219"; transcript_id "CUFF.50219.1"; FPKM "26.1317132782"; frac "1.000000"; conf_lo "4.795259"; conf_hi "47.468168"; cov "1.670103"; +chr13 Cufflinks exon 3649976 3650072 1000 . . gene_id "CUFF.50219"; transcript_id "CUFF.50219.1"; exon_number "1"; FPKM "26.1317132782"; frac "1.000000"; conf_lo "4.795259"; conf_hi "47.468168"; cov "1.670103"; +chr13 Cufflinks transcript 3650165 3650345 1000 . . gene_id "CUFF.50221"; transcript_id "CUFF.50221.1"; FPKM "16.3383363867"; frac "1.000000"; conf_lo "3.987715"; conf_hi "28.688958"; cov "1.044199"; +chr13 Cufflinks exon 3650165 3650345 1000 . . gene_id "CUFF.50221"; transcript_id "CUFF.50221.1"; exon_number "1"; FPKM "16.3383363867"; frac "1.000000"; conf_lo "3.987715"; conf_hi "28.688958"; cov "1.044199"; +chr13 Cufflinks transcript 3650498 3651017 1000 . . gene_id "CUFF.50223"; transcript_id "CUFF.50223.1"; FPKM "38.9965567383"; frac "1.000000"; conf_lo "27.739220"; conf_hi "50.253893"; cov "2.492308"; +chr13 Cufflinks exon 3650498 3651017 1000 . . gene_id "CUFF.50223"; transcript_id "CUFF.50223.1"; exon_number "1"; FPKM "38.9965567383"; frac "1.000000"; conf_lo "27.739220"; conf_hi "50.253893"; cov "2.492308"; +chr13 Cufflinks transcript 3652248 3652287 1000 . . gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks exon 3652248 3652287 1000 . . gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks transcript 3652708 3652757 1000 . . gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000"; +chr13 Cufflinks exon 3652708 3652757 1000 . . gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000"; +chr13 Cufflinks transcript 3652858 3652892 1000 . . gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857"; +chr13 Cufflinks exon 3652858 3652892 1000 . . gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; exon_number "1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857"; +chr13 Cufflinks transcript 3803155 3803189 1000 . . gene_id "CUFF.50231"; transcript_id "CUFF.50231.1"; FPKM "193.0684834367"; frac "1.000000"; conf_lo "96.519912"; conf_hi "289.617054"; cov "12.339194"; +chr13 Cufflinks exon 3803155 3803189 1000 . . gene_id "CUFF.50231"; transcript_id "CUFF.50231.1"; exon_number "1"; FPKM "193.0684834367"; frac "1.000000"; conf_lo "96.519912"; conf_hi "289.617054"; cov "12.339194"; +chr13 Cufflinks transcript 3881504 3881530 1000 . . gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3881504 3881530 1000 . . gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3881847 3881940 1000 . . gene_id "CUFF.50235"; transcript_id "CUFF.50235.1"; FPKM "11.2303742880"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.439173"; cov "0.717744"; +chr13 Cufflinks exon 3881847 3881940 1000 . . gene_id "CUFF.50235"; transcript_id "CUFF.50235.1"; exon_number "1"; FPKM "11.2303742880"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.439173"; cov "0.717744"; +chr13 Cufflinks transcript 3882719 3882811 1000 . . gene_id "CUFF.50237"; transcript_id "CUFF.50237.1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645"; +chr13 Cufflinks exon 3882719 3882811 1000 . . gene_id "CUFF.50237"; transcript_id "CUFF.50237.1"; exon_number "1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645"; +chr13 Cufflinks transcript 3940646 3940672 1000 . . gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3940646 3940672 1000 . . gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4135893 4135996 1000 . . gene_id "CUFF.50241"; transcript_id "CUFF.50241.1"; FPKM "8.1242826538"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.613753"; cov "0.519231"; +chr13 Cufflinks exon 4135893 4135996 1000 . . gene_id "CUFF.50241"; transcript_id "CUFF.50241.1"; exon_number "1"; FPKM "8.1242826538"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.613753"; cov "0.519231"; +chr13 Cufflinks transcript 4246054 4246080 1000 . . gene_id "CUFF.50243"; transcript_id "CUFF.50243.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 4246054 4246080 1000 . . gene_id "CUFF.50243"; transcript_id "CUFF.50243.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4246081 4246107 1000 . . gene_id "CUFF.50245"; transcript_id "CUFF.50245.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 4246081 4246107 1000 . . gene_id "CUFF.50245"; transcript_id "CUFF.50245.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 4247347 4247373 1000 . . gene_id "CUFF.50247"; transcript_id "CUFF.50247.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 4247347 4247373 1000 . . gene_id "CUFF.50247"; transcript_id "CUFF.50247.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 4247393 4247419 1000 . . gene_id "CUFF.50249"; transcript_id "CUFF.50249.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 4247393 4247419 1000 . . gene_id "CUFF.50249"; transcript_id "CUFF.50249.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 4253585 4253611 1000 . . gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 4253585 4253611 1000 . . gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4356816 4356842 1000 . . gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626"; +chr13 Cufflinks exon 4356816 4356842 1000 . . gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; exon_number "1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626"; +chr13 Cufflinks transcript 4591975 4592074 1000 . . gene_id "CUFF.50255"; transcript_id "CUFF.50255.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.797016"; cov "1.080000"; +chr13 Cufflinks exon 4591975 4592074 1000 . . gene_id "CUFF.50255"; transcript_id "CUFF.50255.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.797016"; cov "1.080000"; +chr13 Cufflinks transcript 4592148 4592531 1000 . . gene_id "CUFF.50257"; transcript_id "CUFF.50257.1"; FPKM "22.0032655207"; frac "1.000000"; conf_lo "12.163106"; conf_hi "31.843425"; cov "1.406250"; +chr13 Cufflinks exon 4592148 4592531 1000 . . gene_id "CUFF.50257"; transcript_id "CUFF.50257.1"; exon_number "1"; FPKM "22.0032655207"; frac "1.000000"; conf_lo "12.163106"; conf_hi "31.843425"; cov "1.406250"; +chr13 Cufflinks transcript 4592862 4592890 1000 . . gene_id "CUFF.50259"; transcript_id "CUFF.50259.1"; FPKM "58.2707169652"; frac "1.000000"; conf_lo "0.000000"; conf_hi "116.541434"; cov "3.724138"; +chr13 Cufflinks exon 4592862 4592890 1000 . . gene_id "CUFF.50259"; transcript_id "CUFF.50259.1"; exon_number "1"; FPKM "58.2707169652"; frac "1.000000"; conf_lo "0.000000"; conf_hi "116.541434"; cov "3.724138"; +chr13 Cufflinks transcript 4594319 4594938 1000 - . gene_id "CUFF.50261"; transcript_id "CUFF.50261.1"; FPKM "29.3887094260"; frac "1.000000"; conf_lo "8.607754"; conf_hi "50.169665"; cov "1.878261"; +chr13 Cufflinks exon 4594319 4594400 1000 - . gene_id "CUFF.50261"; transcript_id "CUFF.50261.1"; exon_number "1"; FPKM "29.3887094260"; frac "1.000000"; conf_lo "8.607754"; conf_hi "50.169665"; cov "1.878261"; +chr13 Cufflinks exon 4594906 4594938 1000 - . gene_id "CUFF.50261"; transcript_id "CUFF.50261.1"; exon_number "2"; FPKM "29.3887094260"; frac "1.000000"; conf_lo "8.607754"; conf_hi "50.169665"; cov "1.878261"; +chr13 Cufflinks transcript 4596799 4598059 1000 - . gene_id "CUFF.50263"; transcript_id "CUFF.50263.1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks exon 4596799 4596828 1000 - . gene_id "CUFF.50263"; transcript_id "CUFF.50263.1"; exon_number "1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks exon 4598016 4598059 1000 - . gene_id "CUFF.50263"; transcript_id "CUFF.50263.1"; exon_number "2"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks transcript 4601790 4601816 1000 . . gene_id "CUFF.50265"; transcript_id "CUFF.50265.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 4601790 4601816 1000 . . gene_id "CUFF.50265"; transcript_id "CUFF.50265.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4601884 4601952 1000 . . gene_id "CUFF.50267"; transcript_id "CUFF.50267.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609"; +chr13 Cufflinks exon 4601884 4601952 1000 . . gene_id "CUFF.50267"; transcript_id "CUFF.50267.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609"; +chr13 Cufflinks transcript 3541632 3541797 1000 . . gene_id "CUFF.50269"; transcript_id "CUFF.50269.1"; FPKM "10.1798240481"; frac "1.000000"; conf_lo "0.000000"; conf_hi "20.359648"; cov "0.650602"; +chr13 Cufflinks exon 3541632 3541797 1000 . . gene_id "CUFF.50269"; transcript_id "CUFF.50269.1"; exon_number "1"; FPKM "10.1798240481"; frac "1.000000"; conf_lo "0.000000"; conf_hi "20.359648"; cov "0.650602"; +chr13 Cufflinks transcript 3541917 3542016 1000 . . gene_id "CUFF.50271"; transcript_id "CUFF.50271.1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.308418"; cov "0.810000"; +chr13 Cufflinks exon 3541917 3542016 1000 . . gene_id "CUFF.50271"; transcript_id "CUFF.50271.1"; exon_number "1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.308418"; cov "0.810000"; +chr13 Cufflinks transcript 3542096 3542122 1000 . . gene_id "CUFF.50273"; transcript_id "CUFF.50273.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3542096 3542122 1000 . . gene_id "CUFF.50273"; transcript_id "CUFF.50273.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3548183 3548209 1000 . . gene_id "CUFF.50275"; transcript_id "CUFF.50275.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3548183 3548209 1000 . . gene_id "CUFF.50275"; transcript_id "CUFF.50275.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3559238 3559264 1000 . . gene_id "CUFF.50277"; transcript_id "CUFF.50277.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 3559238 3559264 1000 . . gene_id "CUFF.50277"; transcript_id "CUFF.50277.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 3559265 3559291 1000 . . gene_id "CUFF.50279"; transcript_id "CUFF.50279.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 3559265 3559291 1000 . . gene_id "CUFF.50279"; transcript_id "CUFF.50279.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 3561489 3561515 1000 . . gene_id "CUFF.50281"; transcript_id "CUFF.50281.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 3561489 3561515 1000 . . gene_id "CUFF.50281"; transcript_id "CUFF.50281.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 3561516 3561616 1000 . . gene_id "CUFF.50283"; transcript_id "CUFF.50283.1"; FPKM "12.5483969702"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.038038"; cov "0.801980"; +chr13 Cufflinks exon 3561516 3561616 1000 . . gene_id "CUFF.50283"; transcript_id "CUFF.50283.1"; exon_number "1"; FPKM "12.5483969702"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.038038"; cov "0.801980"; +chr13 Cufflinks transcript 3563788 3563913 1000 . . gene_id "CUFF.50285"; transcript_id "CUFF.50285.1"; FPKM "16.7564314774"; frac "1.000000"; conf_lo "1.765464"; conf_hi "31.747399"; cov "1.070920"; +chr13 Cufflinks exon 3563788 3563913 1000 . . gene_id "CUFF.50285"; transcript_id "CUFF.50285.1"; exon_number "1"; FPKM "16.7564314774"; frac "1.000000"; conf_lo "1.765464"; conf_hi "31.747399"; cov "1.070920"; +chr13 Cufflinks transcript 3564114 3564162 1000 . . gene_id "CUFF.50287"; transcript_id "CUFF.50287.1"; FPKM "68.9735017140"; frac "1.000000"; conf_lo "20.201871"; conf_hi "117.745132"; cov "4.408163"; +chr13 Cufflinks exon 3564114 3564162 1000 . . gene_id "CUFF.50287"; transcript_id "CUFF.50287.1"; exon_number "1"; FPKM "68.9735017140"; frac "1.000000"; conf_lo "20.201871"; conf_hi "117.745132"; cov "4.408163"; +chr13 Cufflinks transcript 5861035 5872268 1000 - . gene_id "CUFF.50289"; transcript_id "CUFF.50289.1"; FPKM "7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov "0.482143"; +chr13 Cufflinks exon 5861035 5861117 1000 - . gene_id "CUFF.50289"; transcript_id "CUFF.50289.1"; exon_number "1"; FPKM "7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov "0.482143"; +chr13 Cufflinks exon 5872240 5872268 1000 - . gene_id "CUFF.50289"; transcript_id "CUFF.50289.1"; exon_number "2"; FPKM "7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov "0.482143"; +chr13 Cufflinks transcript 5864061 5864135 1000 . . gene_id "CUFF.50291"; transcript_id "CUFF.50291.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.411224"; cov "1.080000"; +chr13 Cufflinks exon 5864061 5864135 1000 . . gene_id "CUFF.50291"; transcript_id "CUFF.50291.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.411224"; cov "1.080000"; +chr13 Cufflinks transcript 5864192 5864585 1000 . . gene_id "CUFF.50293"; transcript_id "CUFF.50293.1"; FPKM "18.2280859542"; frac "1.000000"; conf_lo "9.386166"; conf_hi "27.070006"; cov "1.164975"; +chr13 Cufflinks exon 5864192 5864585 1000 . . gene_id "CUFF.50293"; transcript_id "CUFF.50293.1"; exon_number "1"; FPKM "18.2280859542"; frac "1.000000"; conf_lo "9.386166"; conf_hi "27.070006"; cov "1.164975"; +chr13 Cufflinks transcript 5865070 5865096 1000 . . gene_id "CUFF.50295"; transcript_id "CUFF.50295.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 5865070 5865096 1000 . . gene_id "CUFF.50295"; transcript_id "CUFF.50295.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 5865442 5866941 1000 + . gene_id "CUFF.50297"; transcript_id "CUFF.50297.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.446269"; cov "0.843750"; +chr13 Cufflinks exon 5865442 5865510 1000 + . gene_id "CUFF.50297"; transcript_id "CUFF.50297.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.446269"; cov "0.843750"; +chr13 Cufflinks exon 5866915 5866941 1000 + . gene_id "CUFF.50297"; transcript_id "CUFF.50297.1"; exon_number "2"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.446269"; cov "0.843750"; +chr13 Cufflinks transcript 5866598 5866661 1000 . . gene_id "CUFF.50299"; transcript_id "CUFF.50299.1"; FPKM "92.4137151871"; frac "1.000000"; conf_lo "43.016507"; conf_hi "141.810924"; cov "5.906250"; +chr13 Cufflinks exon 5866598 5866661 1000 . . gene_id "CUFF.50299"; transcript_id "CUFF.50299.1"; exon_number "1"; FPKM "92.4137151871"; frac "1.000000"; conf_lo "43.016507"; conf_hi "141.810924"; cov "5.906250"; +chr13 Cufflinks transcript 5866756 5866871 1000 . . gene_id "CUFF.50301"; transcript_id "CUFF.50301.1"; FPKM "83.7641556375"; frac "1.000000"; conf_lo "48.832088"; conf_hi "118.696223"; cov "5.353448"; +chr13 Cufflinks exon 5866756 5866871 1000 . . gene_id "CUFF.50301"; transcript_id "CUFF.50301.1"; exon_number "1"; FPKM "83.7641556375"; frac "1.000000"; conf_lo "48.832088"; conf_hi "118.696223"; cov "5.353448"; +chr13 Cufflinks transcript 5866964 5867014 1000 . . gene_id "CUFF.50303"; transcript_id "CUFF.50303.1"; FPKM "124.2537347053"; frac "1.000000"; conf_lo "60.089382"; conf_hi "188.418087"; cov "7.941176"; +chr13 Cufflinks exon 5866964 5867014 1000 . . gene_id "CUFF.50303"; transcript_id "CUFF.50303.1"; exon_number "1"; FPKM "124.2537347053"; frac "1.000000"; conf_lo "60.089382"; conf_hi "188.418087"; cov "7.941176"; +chr13 Cufflinks transcript 5867386 5867412 1000 . . gene_id "CUFF.50305"; transcript_id "CUFF.50305.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 5867386 5867412 1000 . . gene_id "CUFF.50305"; transcript_id "CUFF.50305.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 5867480 5867506 1000 . . gene_id "CUFF.50307"; transcript_id "CUFF.50307.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 5867480 5867506 1000 . . gene_id "CUFF.50307"; transcript_id "CUFF.50307.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 5867688 5867737 1000 . . gene_id "CUFF.50309"; transcript_id "CUFF.50309.1"; FPKM "25.3477618799"; frac "1.000000"; conf_lo "0.000000"; conf_hi "54.616836"; cov "1.620000"; +chr13 Cufflinks exon 5867688 5867737 1000 . . gene_id "CUFF.50309"; transcript_id "CUFF.50309.1"; exon_number "1"; FPKM "25.3477618799"; frac "1.000000"; conf_lo "0.000000"; conf_hi "54.616836"; cov "1.620000"; +chr13 Cufflinks transcript 5867820 5868008 1000 . . gene_id "CUFF.50311"; transcript_id "CUFF.50311.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "3.818923"; conf_hi "27.474610"; cov "1.000000"; +chr13 Cufflinks exon 5867820 5868008 1000 . . gene_id "CUFF.50311"; transcript_id "CUFF.50311.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "3.818923"; conf_hi "27.474610"; cov "1.000000"; +chr13 Cufflinks transcript 5868254 5868314 1000 . . gene_id "CUFF.50313"; transcript_id "CUFF.50313.1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246"; +chr13 Cufflinks exon 5868254 5868314 1000 . . gene_id "CUFF.50313"; transcript_id "CUFF.50313.1"; exon_number "1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246"; +chr13 Cufflinks transcript 5869125 5869300 1000 . . gene_id "CUFF.50315"; transcript_id "CUFF.50315.1"; FPKM "88.8131808291"; frac "1.000000"; conf_lo "59.611587"; conf_hi "118.014775"; cov "5.676136"; +chr13 Cufflinks exon 5869125 5869300 1000 . . gene_id "CUFF.50315"; transcript_id "CUFF.50315.1"; exon_number "1"; FPKM "88.8131808291"; frac "1.000000"; conf_lo "59.611587"; conf_hi "118.014775"; cov "5.676136"; +chr13 Cufflinks transcript 5869455 5869484 1000 . . gene_id "CUFF.50317"; transcript_id "CUFF.50317.1"; FPKM "133.7631356353"; frac "1.000000"; conf_lo "46.960728"; conf_hi "220.565544"; cov "8.548931"; +chr13 Cufflinks exon 5869455 5869484 1000 . . gene_id "CUFF.50317"; transcript_id "CUFF.50317.1"; exon_number "1"; FPKM "133.7631356353"; frac "1.000000"; conf_lo "46.960728"; conf_hi "220.565544"; cov "8.548931"; +chr13 Cufflinks transcript 5869555 5869581 1000 . . gene_id "CUFF.50319"; transcript_id "CUFF.50319.1"; FPKM "125.1741327402"; frac "1.000000"; conf_lo "36.662655"; conf_hi "213.685611"; cov "8.000000"; +chr13 Cufflinks exon 5869555 5869581 1000 . . gene_id "CUFF.50319"; transcript_id "CUFF.50319.1"; exon_number "1"; FPKM "125.1741327402"; frac "1.000000"; conf_lo "36.662655"; conf_hi "213.685611"; cov "8.000000"; +chr13 Cufflinks transcript 6205097 6205155 1000 . . gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254"; +chr13 Cufflinks exon 6205097 6205155 1000 . . gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; exon_number "1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254"; +chr13 Cufflinks transcript 6227260 6227293 1000 . . gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234"; +chr13 Cufflinks exon 6227260 6227293 1000 . . gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; exon_number "1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234"; +chr13 Cufflinks transcript 6553021 6553051 1000 . . gene_id "CUFF.50325"; transcript_id "CUFF.50325.1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935"; +chr13 Cufflinks exon 6553021 6553051 1000 . . gene_id "CUFF.50325"; transcript_id "CUFF.50325.1"; exon_number "1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935"; +chr13 Cufflinks transcript 6576412 6576471 1000 . . gene_id "CUFF.50327"; transcript_id "CUFF.50327.1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.997173"; cov "0.900000"; +chr13 Cufflinks exon 6576412 6576471 1000 . . gene_id "CUFF.50327"; transcript_id "CUFF.50327.1"; exon_number "1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.997173"; cov "0.900000"; +chr13 Cufflinks transcript 6576625 6576734 1000 . . gene_id "CUFF.50329"; transcript_id "CUFF.50329.1"; FPKM "26.8839898726"; frac "1.000000"; conf_lo "6.561604"; conf_hi "47.206376"; cov "1.718182"; +chr13 Cufflinks exon 6576625 6576734 1000 . . gene_id "CUFF.50329"; transcript_id "CUFF.50329.1"; exon_number "1"; FPKM "26.8839898726"; frac "1.000000"; conf_lo "6.561604"; conf_hi "47.206376"; cov "1.718182"; +chr13 Cufflinks transcript 6577727 6577820 1000 . . gene_id "CUFF.50331"; transcript_id "CUFF.50331.1"; FPKM "31.4599881488"; frac "1.000000"; conf_lo "7.678472"; conf_hi "55.241504"; cov "2.010638"; +chr13 Cufflinks exon 6577727 6577820 1000 . . gene_id "CUFF.50331"; transcript_id "CUFF.50331.1"; exon_number "1"; FPKM "31.4599881488"; frac "1.000000"; conf_lo "7.678472"; conf_hi "55.241504"; cov "2.010638"; +chr13 Cufflinks transcript 6579706 6579858 1000 . . gene_id "CUFF.50333"; transcript_id "CUFF.50333.1"; FPKM "11.0447764182"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.089553"; cov "0.705882"; +chr13 Cufflinks exon 6579706 6579858 1000 . . gene_id "CUFF.50333"; transcript_id "CUFF.50333.1"; exon_number "1"; FPKM "11.0447764182"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.089553"; cov "0.705882"; +chr13 Cufflinks transcript 6580126 6580152 1000 . . gene_id "CUFF.50335"; transcript_id "CUFF.50335.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 6580126 6580152 1000 . . gene_id "CUFF.50335"; transcript_id "CUFF.50335.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 6580257 6580295 1000 . . gene_id "CUFF.50337"; transcript_id "CUFF.50337.1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615"; +chr13 Cufflinks exon 6580257 6580295 1000 . . gene_id "CUFF.50337"; transcript_id "CUFF.50337.1"; exon_number "1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615"; +chr13 Cufflinks transcript 6583845 6585843 1000 - . gene_id "CUFF.50339"; transcript_id "CUFF.50339.1"; FPKM "163.2242242265"; frac "1.000000"; conf_lo "127.815919"; conf_hi "198.632530"; cov "10.431818"; +chr13 Cufflinks exon 6583845 6583946 1000 - . gene_id "CUFF.50339"; transcript_id "CUFF.50339.1"; exon_number "1"; FPKM "163.2242242265"; frac "1.000000"; conf_lo "127.815919"; conf_hi "198.632530"; cov "10.431818"; +chr13 Cufflinks exon 6585726 6585843 1000 - . gene_id "CUFF.50339"; transcript_id "CUFF.50339.1"; exon_number "2"; FPKM "163.2242242265"; frac "1.000000"; conf_lo "127.815919"; conf_hi "198.632530"; cov "10.431818"; +chr13 Cufflinks transcript 6586295 6587966 1000 - . gene_id "CUFF.50341"; transcript_id "CUFF.50341.1"; FPKM "82.5011329424"; frac "1.000000"; conf_lo "60.835274"; conf_hi "104.166992"; cov "5.272727"; +chr13 Cufflinks exon 6586295 6586359 1000 - . gene_id "CUFF.50341"; transcript_id "CUFF.50341.1"; exon_number "1"; FPKM "82.5011329424"; frac "1.000000"; conf_lo "60.835274"; conf_hi "104.166992"; cov "5.272727"; +chr13 Cufflinks exon 6587735 6587966 1000 - . gene_id "CUFF.50341"; transcript_id "CUFF.50341.1"; exon_number "2"; FPKM "82.5011329424"; frac "1.000000"; conf_lo "60.835274"; conf_hi "104.166992"; cov "5.272727"; +chr13 Cufflinks transcript 6588113 6588703 1000 . . gene_id "CUFF.50343"; transcript_id "CUFF.50343.1"; FPKM "42.8896140100"; frac "1.000000"; conf_lo "31.815563"; conf_hi "53.963665"; cov "2.741117"; +chr13 Cufflinks exon 6588113 6588703 1000 . . gene_id "CUFF.50343"; transcript_id "CUFF.50343.1"; exon_number "1"; FPKM "42.8896140100"; frac "1.000000"; conf_lo "31.815563"; conf_hi "53.963665"; cov "2.741117"; +chr13 Cufflinks transcript 6588763 6588911 1000 . . gene_id "CUFF.50345"; transcript_id "CUFF.50345.1"; FPKM "31.1885213287"; frac "1.000000"; conf_lo "12.381135"; conf_hi "49.995907"; cov "1.993289"; +chr13 Cufflinks exon 6588763 6588911 1000 . . gene_id "CUFF.50345"; transcript_id "CUFF.50345.1"; exon_number "1"; FPKM "31.1885213287"; frac "1.000000"; conf_lo "12.381135"; conf_hi "49.995907"; cov "1.993289"; +chr13 Cufflinks transcript 6588964 6589091 1000 . . gene_id "CUFF.50347"; transcript_id "CUFF.50347.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.403919"; cov "0.843750"; +chr13 Cufflinks exon 6588964 6589091 1000 . . gene_id "CUFF.50347"; transcript_id "CUFF.50347.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.403919"; cov "0.843750"; +chr13 Cufflinks transcript 6589153 6589383 1000 . . gene_id "CUFF.50349"; transcript_id "CUFF.50349.1"; FPKM "12.8018999393"; frac "1.000000"; conf_lo "3.124573"; conf_hi "22.479227"; cov "0.818182"; +chr13 Cufflinks exon 6589153 6589383 1000 . . gene_id "CUFF.50349"; transcript_id "CUFF.50349.1"; exon_number "1"; FPKM "12.8018999393"; frac "1.000000"; conf_lo "3.124573"; conf_hi "22.479227"; cov "0.818182"; +chr13 Cufflinks transcript 6589994 6590086 1000 . . gene_id "CUFF.50351"; transcript_id "CUFF.50351.1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645"; +chr13 Cufflinks exon 6589994 6590086 1000 . . gene_id "CUFF.50351"; transcript_id "CUFF.50351.1"; exon_number "1"; FPKM "9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov "0.580645"; +chr13 Cufflinks transcript 6590329 6590359 1000 . . gene_id "CUFF.50353"; transcript_id "CUFF.50353.1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935"; +chr13 Cufflinks exon 6590329 6590359 1000 . . gene_id "CUFF.50353"; transcript_id "CUFF.50353.1"; exon_number "1"; FPKM "27.2556579354"; frac "1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov "1.741935"; +chr13 Cufflinks transcript 6590592 6590645 1000 . . gene_id "CUFF.50355"; transcript_id "CUFF.50355.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.774636"; cov "1.000000"; +chr13 Cufflinks exon 6590592 6590645 1000 . . gene_id "CUFF.50355"; transcript_id "CUFF.50355.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.774636"; cov "1.000000"; +chr13 Cufflinks transcript 6590963 6591056 1000 . . gene_id "CUFF.50357"; transcript_id "CUFF.50357.1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.954272"; cov "1.148936"; +chr13 Cufflinks exon 6590963 6591056 1000 . . gene_id "CUFF.50357"; transcript_id "CUFF.50357.1"; exon_number "1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.954272"; cov "1.148936"; +chr13 Cufflinks transcript 6591182 6591208 1000 . . gene_id "CUFF.50359"; transcript_id "CUFF.50359.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 6591182 6591208 1000 . . gene_id "CUFF.50359"; transcript_id "CUFF.50359.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 6591662 6591724 1000 . . gene_id "CUFF.50361"; transcript_id "CUFF.50361.1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143"; +chr13 Cufflinks exon 6591662 6591724 1000 . . gene_id "CUFF.50361"; transcript_id "CUFF.50361.1"; exon_number "1"; FPKM "13.4115142222"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov "0.857143"; +chr13 Cufflinks transcript 6592773 6592874 1000 . . gene_id "CUFF.50363"; transcript_id "CUFF.50363.1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118"; +chr13 Cufflinks exon 6592773 6592874 1000 . . gene_id "CUFF.50363"; transcript_id "CUFF.50363.1"; exon_number "1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118"; +chr13 Cufflinks transcript 6580385 6581757 1000 - . gene_id "CUFF.50365"; transcript_id "CUFF.50365.1"; FPKM "324.9135847836"; frac "1.000000"; conf_lo "293.684884"; conf_hi "356.142286"; cov "20.765542"; +chr13 Cufflinks exon 6580385 6580838 1000 - . gene_id "CUFF.50365"; transcript_id "CUFF.50365.1"; exon_number "1"; FPKM "324.9135847836"; frac "1.000000"; conf_lo "293.684884"; conf_hi "356.142286"; cov "20.765542"; +chr13 Cufflinks exon 6581649 6581757 1000 - . gene_id "CUFF.50365"; transcript_id "CUFF.50365.1"; exon_number "2"; FPKM "324.9135847836"; frac "1.000000"; conf_lo "293.684884"; conf_hi "356.142286"; cov "20.765542"; +chr13 Cufflinks transcript 6594213 6594242 1000 . . gene_id "CUFF.50367"; transcript_id "CUFF.50367.1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000"; +chr13 Cufflinks exon 6594213 6594242 1000 . . gene_id "CUFF.50367"; transcript_id "CUFF.50367.1"; exon_number "1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000"; +chr13 Cufflinks transcript 6594897 6594938 1000 . . gene_id "CUFF.50369"; transcript_id "CUFF.50369.1"; FPKM "20.1172713332"; frac "1.000000"; conf_lo "0.000000"; conf_hi "48.567389"; cov "1.285714"; +chr13 Cufflinks exon 6594897 6594938 1000 . . gene_id "CUFF.50369"; transcript_id "CUFF.50369.1"; exon_number "1"; FPKM "20.1172713332"; frac "1.000000"; conf_lo "0.000000"; conf_hi "48.567389"; cov "1.285714"; +chr13 Cufflinks transcript 6594742 6594836 1000 . . gene_id "CUFF.50371"; transcript_id "CUFF.50371.1"; FPKM "13.3409273052"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.745703"; cov "0.852632"; +chr13 Cufflinks exon 6594742 6594836 1000 . . gene_id "CUFF.50371"; transcript_id "CUFF.50371.1"; exon_number "1"; FPKM "13.3409273052"; frac "1.000000"; conf_lo "0.000000"; conf_hi "28.745703"; cov "0.852632"; +chr13 Cufflinks transcript 6595072 6595132 1000 . . gene_id "CUFF.50373"; transcript_id "CUFF.50373.1"; FPKM "20.7768539999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "44.767898"; cov "1.327869"; +chr13 Cufflinks exon 6595072 6595132 1000 . . gene_id "CUFF.50373"; transcript_id "CUFF.50373.1"; exon_number "1"; FPKM "20.7768539999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "44.767898"; cov "1.327869"; +chr13 Cufflinks transcript 6595199 6595225 1000 . . gene_id "CUFF.50375"; transcript_id "CUFF.50375.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 6595199 6595225 1000 . . gene_id "CUFF.50375"; transcript_id "CUFF.50375.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 6595246 6595272 1000 . . gene_id "CUFF.50377"; transcript_id "CUFF.50377.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 6595246 6595272 1000 . . gene_id "CUFF.50377"; transcript_id "CUFF.50377.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 6598001 6598027 1000 . . gene_id "CUFF.50379"; transcript_id "CUFF.50379.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 6598001 6598027 1000 . . gene_id "CUFF.50379"; transcript_id "CUFF.50379.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 6601936 6601990 1000 . . gene_id "CUFF.50381"; transcript_id "CUFF.50381.1"; FPKM "15.3622799272"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.087825"; cov "0.981818"; +chr13 Cufflinks exon 6601936 6601990 1000 . . gene_id "CUFF.50381"; transcript_id "CUFF.50381.1"; exon_number "1"; FPKM "15.3622799272"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.087825"; cov "0.981818"; +chr13 Cufflinks transcript 6604226 6604297 1000 . . gene_id "CUFF.50383"; transcript_id "CUFF.50383.1"; FPKM "17.6026124166"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.928358"; cov "1.125000"; +chr13 Cufflinks exon 6604226 6604297 1000 . . gene_id "CUFF.50383"; transcript_id "CUFF.50383.1"; exon_number "1"; FPKM "17.6026124166"; frac "1.000000"; conf_lo "0.000000"; conf_hi "37.928358"; cov "1.125000"; +chr13 Cufflinks transcript 6616305 6616331 1000 . . gene_id "CUFF.50385"; transcript_id "CUFF.50385.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks exon 6616305 6616331 1000 . . gene_id "CUFF.50385"; transcript_id "CUFF.50385.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks transcript 6616841 6616921 1000 . . gene_id "CUFF.50387"; transcript_id "CUFF.50387.1"; FPKM "5.2155888642"; frac "1.000000"; conf_lo "0.000000"; conf_hi "15.646767"; cov "0.333333"; +chr13 Cufflinks exon 6616841 6616921 1000 . . gene_id "CUFF.50387"; transcript_id "CUFF.50387.1"; exon_number "1"; FPKM "5.2155888642"; frac "1.000000"; conf_lo "0.000000"; conf_hi "15.646767"; cov "0.333333"; +chr13 Cufflinks transcript 6617878 6617990 1000 . . gene_id "CUFF.50389"; transcript_id "CUFF.50389.1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814"; +chr13 Cufflinks exon 6617878 6617990 1000 . . gene_id "CUFF.50389"; transcript_id "CUFF.50389.1"; exon_number "1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814"; +chr13 Cufflinks transcript 6618127 6618156 1000 . . gene_id "CUFF.50391"; transcript_id "CUFF.50391.1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000"; +chr13 Cufflinks exon 6618127 6618156 1000 . . gene_id "CUFF.50391"; transcript_id "CUFF.50391.1"; exon_number "1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov "1.800000"; +chr13 Cufflinks transcript 6618432 6618463 1000 . . gene_id "CUFF.50393"; transcript_id "CUFF.50393.1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500"; +chr13 Cufflinks exon 6618432 6618463 1000 . . gene_id "CUFF.50393"; transcript_id "CUFF.50393.1"; exon_number "1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500"; +chr13 Cufflinks transcript 6618765 6618809 1000 . . gene_id "CUFF.50395"; transcript_id "CUFF.50395.1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "60.685374"; cov "1.800000"; +chr13 Cufflinks exon 6618765 6618809 1000 . . gene_id "CUFF.50395"; transcript_id "CUFF.50395.1"; exon_number "1"; FPKM "28.1641798665"; frac "1.000000"; conf_lo "0.000000"; conf_hi "60.685374"; cov "1.800000"; +chr13 Cufflinks transcript 6620226 6620259 1000 . . gene_id "CUFF.50397"; transcript_id "CUFF.50397.1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.995010"; cov "1.588235"; +chr13 Cufflinks exon 6620226 6620259 1000 . . gene_id "CUFF.50397"; transcript_id "CUFF.50397.1"; exon_number "1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.995010"; cov "1.588235"; +chr13 Cufflinks transcript 6795860 6795886 1000 . . gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 6795860 6795886 1000 . . gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 7155940 7155966 1000 . . gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 7155940 7155966 1000 . . gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 7676033 7676123 1000 . . gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks exon 7676033 7676123 1000 . . gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; exon_number "1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks transcript 8202861 8202907 1000 . . gene_id "CUFF.50405"; transcript_id "CUFF.50405.1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "43.400646"; cov "1.148936"; +chr13 Cufflinks exon 8202861 8202907 1000 . . gene_id "CUFF.50405"; transcript_id "CUFF.50405.1"; exon_number "1"; FPKM "17.9771360850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "43.400646"; cov "1.148936"; +chr13 Cufflinks transcript 8210506 8210549 1000 . . gene_id "CUFF.50407"; transcript_id "CUFF.50407.1"; FPKM "19.2028499090"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.359781"; cov "1.227273"; +chr13 Cufflinks exon 8210506 8210549 1000 . . gene_id "CUFF.50407"; transcript_id "CUFF.50407.1"; exon_number "1"; FPKM "19.2028499090"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.359781"; cov "1.227273"; +chr13 Cufflinks transcript 8240024 8240081 1000 . . gene_id "CUFF.50409"; transcript_id "CUFF.50409.1"; FPKM "14.5676792413"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.169489"; cov "0.931034"; +chr13 Cufflinks exon 8240024 8240081 1000 . . gene_id "CUFF.50409"; transcript_id "CUFF.50409.1"; exon_number "1"; FPKM "14.5676792413"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.169489"; cov "0.931034"; +chr13 Cufflinks transcript 8277443 8277522 1000 . . gene_id "CUFF.50411"; transcript_id "CUFF.50411.1"; FPKM "10.5615674500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.497879"; cov "0.675000"; +chr13 Cufflinks exon 8277443 8277522 1000 . . gene_id "CUFF.50411"; transcript_id "CUFF.50411.1"; exon_number "1"; FPKM "10.5615674500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.497879"; cov "0.675000"; +chr13 Cufflinks transcript 8277606 8277673 1000 . . gene_id "CUFF.50413"; transcript_id "CUFF.50413.1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.701494"; cov "1.588235"; +chr13 Cufflinks exon 8277606 8277673 1000 . . gene_id "CUFF.50413"; transcript_id "CUFF.50413.1"; exon_number "1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.701494"; cov "1.588235"; +chr13 Cufflinks transcript 8277822 8277848 1000 . . gene_id "CUFF.50415"; transcript_id "CUFF.50415.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8277822 8277848 1000 . . gene_id "CUFF.50415"; transcript_id "CUFF.50415.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8277918 8277977 1000 . . gene_id "CUFF.50417"; transcript_id "CUFF.50417.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.514030"; cov "1.350000"; +chr13 Cufflinks exon 8277918 8277977 1000 . . gene_id "CUFF.50417"; transcript_id "CUFF.50417.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.514030"; cov "1.350000"; +chr13 Cufflinks transcript 8278095 8278121 1000 . . gene_id "CUFF.50419"; transcript_id "CUFF.50419.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8278095 8278121 1000 . . gene_id "CUFF.50419"; transcript_id "CUFF.50419.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8278201 8278350 1000 . . gene_id "CUFF.50421"; transcript_id "CUFF.50421.1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "1.486686"; conf_hi "26.677494"; cov "0.900000"; +chr13 Cufflinks exon 8278201 8278350 1000 . . gene_id "CUFF.50421"; transcript_id "CUFF.50421.1"; exon_number "1"; FPKM "14.0820899333"; frac "1.000000"; conf_lo "1.486686"; conf_hi "26.677494"; cov "0.900000"; +chr13 Cufflinks transcript 8278906 8278932 1000 . . gene_id "CUFF.50423"; transcript_id "CUFF.50423.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks exon 8278906 8278932 1000 . . gene_id "CUFF.50423"; transcript_id "CUFF.50423.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks transcript 8281673 8281699 1000 . . gene_id "CUFF.50425"; transcript_id "CUFF.50425.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8281673 8281699 1000 . . gene_id "CUFF.50425"; transcript_id "CUFF.50425.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8311626 8311652 1000 . . gene_id "CUFF.50427"; transcript_id "CUFF.50427.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8311626 8311652 1000 . . gene_id "CUFF.50427"; transcript_id "CUFF.50427.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8321948 8321974 1000 . . gene_id "CUFF.50429"; transcript_id "CUFF.50429.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8321948 8321974 1000 . . gene_id "CUFF.50429"; transcript_id "CUFF.50429.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8330761 8330829 1000 . . gene_id "CUFF.50431"; transcript_id "CUFF.50431.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609"; +chr13 Cufflinks exon 8330761 8330829 1000 . . gene_id "CUFF.50431"; transcript_id "CUFF.50431.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov "0.782609"; +chr13 Cufflinks transcript 8334495 8335002 1000 . . gene_id "CUFF.50433"; transcript_id "CUFF.50433.1"; FPKM "24.1169650432"; frac "1.000000"; conf_lo "15.160149"; conf_hi "33.073781"; cov "1.541339"; +chr13 Cufflinks exon 8334495 8335002 1000 . . gene_id "CUFF.50433"; transcript_id "CUFF.50433.1"; exon_number "1"; FPKM "24.1169650432"; frac "1.000000"; conf_lo "15.160149"; conf_hi "33.073781"; cov "1.541339"; +chr13 Cufflinks transcript 8335517 8335639 1000 . . gene_id "CUFF.50435"; transcript_id "CUFF.50435.1"; FPKM "13.7386243251"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.477249"; cov "0.878049"; +chr13 Cufflinks exon 8335517 8335639 1000 . . gene_id "CUFF.50435"; transcript_id "CUFF.50435.1"; exon_number "1"; FPKM "13.7386243251"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.477249"; cov "0.878049"; +chr13 Cufflinks transcript 8390965 8390991 1000 . . gene_id "CUFF.50437"; transcript_id "CUFF.50437.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8390965 8390991 1000 . . gene_id "CUFF.50437"; transcript_id "CUFF.50437.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8431938 8432046 1000 . . gene_id "CUFF.50439"; transcript_id "CUFF.50439.1"; FPKM "15.5032182752"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.006437"; cov "0.990826"; +chr13 Cufflinks exon 8431938 8432046 1000 . . gene_id "CUFF.50439"; transcript_id "CUFF.50439.1"; exon_number "1"; FPKM "15.5032182752"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.006437"; cov "0.990826"; +chr13 Cufflinks transcript 8431688 8431754 1000 . . gene_id "CUFF.50441"; transcript_id "CUFF.50441.1"; FPKM "12.6108268059"; frac "1.000000"; conf_lo "0.000000"; conf_hi "30.445229"; cov "0.805970"; +chr13 Cufflinks exon 8431688 8431754 1000 . . gene_id "CUFF.50441"; transcript_id "CUFF.50441.1"; exon_number "1"; FPKM "12.6108268059"; frac "1.000000"; conf_lo "0.000000"; conf_hi "30.445229"; cov "0.805970"; +chr13 Cufflinks transcript 8432289 8432315 1000 . . gene_id "CUFF.50443"; transcript_id "CUFF.50443.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 8432289 8432315 1000 . . gene_id "CUFF.50443"; transcript_id "CUFF.50443.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 8432115 8432188 1000 . . gene_id "CUFF.50445"; transcript_id "CUFF.50445.1"; FPKM "11.4179107567"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.565275"; cov "0.729730"; +chr13 Cufflinks exon 8432115 8432188 1000 . . gene_id "CUFF.50445"; transcript_id "CUFF.50445.1"; exon_number "1"; FPKM "11.4179107567"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.565275"; cov "0.729730"; +chr13 Cufflinks transcript 8463173 8463199 1000 . . gene_id "CUFF.50447"; transcript_id "CUFF.50447.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8463173 8463199 1000 . . gene_id "CUFF.50447"; transcript_id "CUFF.50447.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8482167 8482193 1000 . . gene_id "CUFF.50449"; transcript_id "CUFF.50449.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8482167 8482193 1000 . . gene_id "CUFF.50449"; transcript_id "CUFF.50449.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8518188 8518214 1000 . . gene_id "CUFF.50451"; transcript_id "CUFF.50451.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8518188 8518214 1000 . . gene_id "CUFF.50451"; transcript_id "CUFF.50451.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8619978 8620005 1000 . . gene_id "CUFF.50453"; transcript_id "CUFF.50453.1"; FPKM "30.1759069999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "72.851084"; cov "1.928571"; +chr13 Cufflinks exon 8619978 8620005 1000 . . gene_id "CUFF.50453"; transcript_id "CUFF.50453.1"; exon_number "1"; FPKM "30.1759069999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "72.851084"; cov "1.928571"; +chr13 Cufflinks transcript 8669464 8669490 1000 . . gene_id "CUFF.50455"; transcript_id "CUFF.50455.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8669464 8669490 1000 . . gene_id "CUFF.50455"; transcript_id "CUFF.50455.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8705396 8705459 1000 . . gene_id "CUFF.50457"; transcript_id "CUFF.50457.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov "0.843750"; +chr13 Cufflinks exon 8705396 8705459 1000 . . gene_id "CUFF.50457"; transcript_id "CUFF.50457.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov "0.843750"; +chr13 Cufflinks transcript 8719319 8719345 1000 . . gene_id "CUFF.50459"; transcript_id "CUFF.50459.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8719319 8719345 1000 . . gene_id "CUFF.50459"; transcript_id "CUFF.50459.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8766868 8767005 1000 . . gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609"; +chr13 Cufflinks exon 8766868 8767005 1000 . . gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609"; +chr13 Cufflinks transcript 8767194 8767393 1000 . . gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000"; +chr13 Cufflinks exon 8767194 8767393 1000 . . gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; exon_number "1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000"; +chr13 Cufflinks transcript 8767461 8767531 1000 . . gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845"; +chr13 Cufflinks exon 8767461 8767531 1000 . . gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; exon_number "1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845"; +chr13 Cufflinks transcript 8767695 8767885 1000 . . gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890"; +chr13 Cufflinks exon 8767695 8767885 1000 . . gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; exon_number "1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890"; +chr13 Cufflinks transcript 8767947 8767992 1000 . . gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870"; +chr13 Cufflinks exon 8767947 8767992 1000 . . gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; exon_number "1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870"; +chr13 Cufflinks transcript 8784118 8784193 1000 . . gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789"; +chr13 Cufflinks exon 8784118 8784193 1000 . . gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; exon_number "1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789"; +chr13 Cufflinks transcript 8802391 8802417 1000 . . gene_id "CUFF.50473"; transcript_id "CUFF.50473.1"; FPKM "109.5273661476"; frac "1.000000"; conf_lo "26.732460"; conf_hi "192.322273"; cov "7.000000"; +chr13 Cufflinks exon 8802391 8802417 1000 . . gene_id "CUFF.50473"; transcript_id "CUFF.50473.1"; exon_number "1"; FPKM "109.5273661476"; frac "1.000000"; conf_lo "26.732460"; conf_hi "192.322273"; cov "7.000000"; +chr13 Cufflinks transcript 8802581 8802610 1000 . . gene_id "CUFF.50475"; transcript_id "CUFF.50475.1"; FPKM "154.9029892659"; frac "1.000000"; conf_lo "61.492972"; conf_hi "248.313006"; cov "9.900000"; +chr13 Cufflinks exon 8802581 8802610 1000 . . gene_id "CUFF.50475"; transcript_id "CUFF.50475.1"; exon_number "1"; FPKM "154.9029892659"; frac "1.000000"; conf_lo "61.492972"; conf_hi "248.313006"; cov "9.900000"; +chr13 Cufflinks transcript 8803098 8803283 1000 . . gene_id "CUFF.50477"; transcript_id "CUFF.50477.1"; FPKM "18.1704386236"; frac "1.000000"; conf_lo "5.321998"; conf_hi "31.018879"; cov "1.161290"; +chr13 Cufflinks exon 8803098 8803283 1000 . . gene_id "CUFF.50477"; transcript_id "CUFF.50477.1"; exon_number "1"; FPKM "18.1704386236"; frac "1.000000"; conf_lo "5.321998"; conf_hi "31.018879"; cov "1.161290"; +chr13 Cufflinks transcript 8803340 8803703 1000 . . gene_id "CUFF.50479"; transcript_id "CUFF.50479.1"; FPKM "12.7584623804"; frac "1.000000"; conf_lo "5.062328"; conf_hi "20.454597"; cov "0.815406"; +chr13 Cufflinks exon 8803340 8803703 1000 . . gene_id "CUFF.50479"; transcript_id "CUFF.50479.1"; exon_number "1"; FPKM "12.7584623804"; frac "1.000000"; conf_lo "5.062328"; conf_hi "20.454597"; cov "0.815406"; +chr13 Cufflinks transcript 8803760 8819743 1000 + . gene_id "CUFF.50481"; transcript_id "CUFF.50481.1"; FPKM "15.1783005269"; frac "1.000000"; conf_lo "2.785270"; conf_hi "27.571331"; cov "0.970060"; +chr13 Cufflinks exon 8803760 8803879 1000 + . gene_id "CUFF.50481"; transcript_id "CUFF.50481.1"; exon_number "1"; FPKM "15.1783005269"; frac "1.000000"; conf_lo "2.785270"; conf_hi "27.571331"; cov "0.970060"; +chr13 Cufflinks exon 8819697 8819743 1000 + . gene_id "CUFF.50481"; transcript_id "CUFF.50481.1"; exon_number "2"; FPKM "15.1783005269"; frac "1.000000"; conf_lo "2.785270"; conf_hi "27.571331"; cov "0.970060"; +chr13 Cufflinks transcript 8819122 8819153 1000 . . gene_id "CUFF.50483"; transcript_id "CUFF.50483.1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500"; +chr13 Cufflinks exon 8819122 8819153 1000 . . gene_id "CUFF.50483"; transcript_id "CUFF.50483.1"; exon_number "1"; FPKM "26.4039186249"; frac "1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov "1.687500"; +chr13 Cufflinks transcript 8831114 8831142 1000 . . gene_id "CUFF.50485"; transcript_id "CUFF.50485.1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069"; +chr13 Cufflinks exon 8831114 8831142 1000 . . gene_id "CUFF.50485"; transcript_id "CUFF.50485.1"; exon_number "1"; FPKM "29.1353584826"; frac "1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov "1.862069"; +chr13 Cufflinks transcript 8831216 8831252 1000 . . gene_id "CUFF.50487"; transcript_id "CUFF.50487.1"; FPKM "34.2537322701"; frac "1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov "2.189189"; +chr13 Cufflinks exon 8831216 8831252 1000 . . gene_id "CUFF.50487"; transcript_id "CUFF.50487.1"; exon_number "1"; FPKM "34.2537322701"; frac "1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov "2.189189"; +chr13 Cufflinks transcript 8831404 8831522 1000 . . gene_id "CUFF.50489"; transcript_id "CUFF.50489.1"; FPKM "17.7505335293"; frac "1.000000"; conf_lo "1.873974"; conf_hi "33.627093"; cov "1.134454"; +chr13 Cufflinks exon 8831404 8831522 1000 . . gene_id "CUFF.50489"; transcript_id "CUFF.50489.1"; exon_number "1"; FPKM "17.7505335293"; frac "1.000000"; conf_lo "1.873974"; conf_hi "33.627093"; cov "1.134454"; +chr13 Cufflinks transcript 8849862 8849935 1000 . . gene_id "CUFF.50491"; transcript_id "CUFF.50491.1"; FPKM "17.1268661351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.903268"; cov "1.094595"; +chr13 Cufflinks exon 8849862 8849935 1000 . . gene_id "CUFF.50491"; transcript_id "CUFF.50491.1"; exon_number "1"; FPKM "17.1268661351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.903268"; cov "1.094595"; +chr13 Cufflinks transcript 8850038 8850347 1000 . . gene_id "CUFF.50493"; transcript_id "CUFF.50493.1"; FPKM "9.5394802774"; frac "1.000000"; conf_lo "2.328311"; conf_hi "16.750650"; cov "0.609677"; +chr13 Cufflinks exon 8850038 8850347 1000 . . gene_id "CUFF.50493"; transcript_id "CUFF.50493.1"; exon_number "1"; FPKM "9.5394802774"; frac "1.000000"; conf_lo "2.328311"; conf_hi "16.750650"; cov "0.609677"; +chr13 Cufflinks transcript 8864952 8864979 1000 . . gene_id "CUFF.50495"; transcript_id "CUFF.50495.1"; FPKM "75.4397674996"; frac "1.000000"; conf_lo "7.964388"; conf_hi "142.915147"; cov "4.821429"; +chr13 Cufflinks exon 8864952 8864979 1000 . . gene_id "CUFF.50495"; transcript_id "CUFF.50495.1"; exon_number "1"; FPKM "75.4397674996"; frac "1.000000"; conf_lo "7.964388"; conf_hi "142.915147"; cov "4.821429"; +chr13 Cufflinks transcript 8855128 8864773 1000 - . gene_id "CUFF.50497"; transcript_id "CUFF.50497.1"; FPKM "6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.202850"; cov "0.409091"; +chr13 Cufflinks exon 8855128 8855158 1000 - . gene_id "CUFF.50497"; transcript_id "CUFF.50497.1"; exon_number "1"; FPKM "6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.202850"; cov "0.409091"; +chr13 Cufflinks exon 8864739 8864773 1000 - . gene_id "CUFF.50497"; transcript_id "CUFF.50497.1"; exon_number "2"; FPKM "6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.202850"; cov "0.409091"; +chr13 Cufflinks transcript 8965678 8965704 1000 . . gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8965678 8965704 1000 . . gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 8972036 8972065 1000 . . gene_id "CUFF.50501"; transcript_id "CUFF.50501.1"; FPKM "112.6567194661"; frac "1.000000"; conf_lo "32.996389"; conf_hi "192.317050"; cov "7.200000"; +chr13 Cufflinks exon 8972036 8972065 1000 . . gene_id "CUFF.50501"; transcript_id "CUFF.50501.1"; exon_number "1"; FPKM "112.6567194661"; frac "1.000000"; conf_lo "32.996389"; conf_hi "192.317050"; cov "7.200000"; +chr13 Cufflinks transcript 9133705 9133859 1000 . . gene_id "CUFF.50503"; transcript_id "CUFF.50503.1"; FPKM "8.1766973806"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.618334"; cov "0.522581"; +chr13 Cufflinks exon 9133705 9133859 1000 . . gene_id "CUFF.50503"; transcript_id "CUFF.50503.1"; exon_number "1"; FPKM "8.1766973806"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.618334"; cov "0.522581"; +chr13 Cufflinks transcript 9134178 9134256 1000 . . gene_id "CUFF.50505"; transcript_id "CUFF.50505.1"; FPKM "10.6952581772"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.820637"; cov "0.683544"; +chr13 Cufflinks exon 9134178 9134256 1000 . . gene_id "CUFF.50505"; transcript_id "CUFF.50505.1"; exon_number "1"; FPKM "10.6952581772"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.820637"; cov "0.683544"; +chr13 Cufflinks transcript 9272120 9272153 1000 . . gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350"; +chr13 Cufflinks exon 9272120 9272153 1000 . . gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; exon_number "1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350"; +chr13 Cufflinks transcript 9169898 9172437 1000 + . gene_id "CUFF.50509"; transcript_id "CUFF.50509.1"; FPKM "41.4918721248"; frac "1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov "2.651786"; +chr13 Cufflinks exon 9169898 9169928 1000 + . gene_id "CUFF.50509"; transcript_id "CUFF.50509.1"; exon_number "1"; FPKM "41.4918721248"; frac "1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov "2.651786"; +chr13 Cufflinks exon 9172357 9172437 1000 + . gene_id "CUFF.50509"; transcript_id "CUFF.50509.1"; exon_number "2"; FPKM "41.4918721248"; frac "1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov "2.651786"; +chr13 Cufflinks transcript 9171841 9172220 1000 . . gene_id "CUFF.50511"; transcript_id "CUFF.50511.1"; FPKM "108.9509063258"; frac "1.000000"; conf_lo "86.939499"; conf_hi "130.962313"; cov "6.963158"; +chr13 Cufflinks exon 9171841 9172220 1000 . . gene_id "CUFF.50511"; transcript_id "CUFF.50511.1"; exon_number "1"; FPKM "108.9509063258"; frac "1.000000"; conf_lo "86.939499"; conf_hi "130.962313"; cov "6.963158"; +chr13 Cufflinks transcript 9172647 9173652 1000 . . gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553"; +chr13 Cufflinks exon 9172647 9173652 1000 . . gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; exon_number "1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553"; +chr13 Cufflinks transcript 9277893 9277953 1000 . . gene_id "CUFF.50515"; transcript_id "CUFF.50515.1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246"; +chr13 Cufflinks exon 9277893 9277953 1000 . . gene_id "CUFF.50515"; transcript_id "CUFF.50515.1"; exon_number "1"; FPKM "13.8512359999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov "0.885246"; +chr13 Cufflinks transcript 9278033 9278094 1000 . . gene_id "CUFF.50517"; transcript_id "CUFF.50517.1"; FPKM "13.6278289677"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.900490"; cov "0.870968"; +chr13 Cufflinks exon 9278033 9278094 1000 . . gene_id "CUFF.50517"; transcript_id "CUFF.50517.1"; exon_number "1"; FPKM "13.6278289677"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.900490"; cov "0.870968"; +chr13 Cufflinks transcript 9278482 9278551 1000 . . gene_id "CUFF.50519"; transcript_id "CUFF.50519.1"; FPKM "18.1055441999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.012026"; cov "1.157143"; +chr13 Cufflinks exon 9278482 9278551 1000 . . gene_id "CUFF.50519"; transcript_id "CUFF.50519.1"; exon_number "1"; FPKM "18.1055441999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.012026"; cov "1.157143"; +chr13 Cufflinks transcript 9278167 9278308 1000 . . gene_id "CUFF.50521"; transcript_id "CUFF.50521.1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "3.275634"; conf_hi "32.425439"; cov "1.140845"; +chr13 Cufflinks exon 9278167 9278308 1000 . . gene_id "CUFF.50521"; transcript_id "CUFF.50521.1"; exon_number "1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "3.275634"; conf_hi "32.425439"; cov "1.140845"; +chr13 Cufflinks transcript 9346823 9346849 1000 . . gene_id "CUFF.50523"; transcript_id "CUFF.50523.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9346823 9346849 1000 . . gene_id "CUFF.50523"; transcript_id "CUFF.50523.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9373600 9373693 1000 . . gene_id "CUFF.50525"; transcript_id "CUFF.50525.1"; FPKM "8.9885680425"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.700323"; cov "0.574468"; +chr13 Cufflinks exon 9373600 9373693 1000 . . gene_id "CUFF.50525"; transcript_id "CUFF.50525.1"; exon_number "1"; FPKM "8.9885680425"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.700323"; cov "0.574468"; +chr13 Cufflinks transcript 9353602 9373527 1000 - . gene_id "CUFF.50527"; transcript_id "CUFF.50527.1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.010792"; cov "1.038462"; +chr13 Cufflinks exon 9353602 9353648 1000 - . gene_id "CUFF.50527"; transcript_id "CUFF.50527.1"; exon_number "1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.010792"; cov "1.038462"; +chr13 Cufflinks exon 9373497 9373527 1000 - . gene_id "CUFF.50527"; transcript_id "CUFF.50527.1"; exon_number "2"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.010792"; cov "1.038462"; +chr13 Cufflinks transcript 9386521 9386547 1000 . . gene_id "CUFF.50529"; transcript_id "CUFF.50529.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9386521 9386547 1000 . . gene_id "CUFF.50529"; transcript_id "CUFF.50529.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9391996 9392202 1000 . . gene_id "CUFF.50531"; transcript_id "CUFF.50531.1"; FPKM "12.2404495852"; frac "1.000000"; conf_lo "2.244186"; conf_hi "22.236713"; cov "0.782299"; +chr13 Cufflinks exon 9391996 9392202 1000 . . gene_id "CUFF.50531"; transcript_id "CUFF.50531.1"; exon_number "1"; FPKM "12.2404495852"; frac "1.000000"; conf_lo "2.244186"; conf_hi "22.236713"; cov "0.782299"; +chr13 Cufflinks transcript 9392422 9392467 1000 . . gene_id "CUFF.50533"; transcript_id "CUFF.50533.1"; FPKM "9.1839716956"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.551915"; cov "0.586957"; +chr13 Cufflinks exon 9392422 9392467 1000 . . gene_id "CUFF.50533"; transcript_id "CUFF.50533.1"; exon_number "1"; FPKM "9.1839716956"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.551915"; cov "0.586957"; +chr13 Cufflinks transcript 9392265 9392321 1000 . . gene_id "CUFF.50535"; transcript_id "CUFF.50535.1"; FPKM "14.8232525613"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.786497"; cov "0.947368"; +chr13 Cufflinks exon 9392265 9392321 1000 . . gene_id "CUFF.50535"; transcript_id "CUFF.50535.1"; exon_number "1"; FPKM "14.8232525613"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.786497"; cov "0.947368"; +chr13 Cufflinks transcript 9392577 9392603 1000 . . gene_id "CUFF.50537"; transcript_id "CUFF.50537.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9392577 9392603 1000 . . gene_id "CUFF.50537"; transcript_id "CUFF.50537.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9396631 9396825 1000 . . gene_id "CUFF.50539"; transcript_id "CUFF.50539.1"; FPKM "8.6659014974"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.331803"; cov "0.553846"; +chr13 Cufflinks exon 9396631 9396825 1000 . . gene_id "CUFF.50539"; transcript_id "CUFF.50539.1"; exon_number "1"; FPKM "8.6659014974"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.331803"; cov "0.553846"; +chr13 Cufflinks transcript 9397263 9397434 1000 . . gene_id "CUFF.50541"; transcript_id "CUFF.50541.1"; FPKM "17.1932493371"; frac "1.000000"; conf_lo "4.196374"; conf_hi "30.190124"; cov "1.098837"; +chr13 Cufflinks exon 9397263 9397434 1000 . . gene_id "CUFF.50541"; transcript_id "CUFF.50541.1"; exon_number "1"; FPKM "17.1932493371"; frac "1.000000"; conf_lo "4.196374"; conf_hi "30.190124"; cov "1.098837"; +chr13 Cufflinks transcript 9398210 9398294 1000 . . gene_id "CUFF.50543"; transcript_id "CUFF.50543.1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "23.998004"; cov "0.635294"; +chr13 Cufflinks exon 9398210 9398294 1000 . . gene_id "CUFF.50543"; transcript_id "CUFF.50543.1"; exon_number "1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "23.998004"; cov "0.635294"; +chr13 Cufflinks transcript 9406013 9406051 1000 . . gene_id "CUFF.50545"; transcript_id "CUFF.50545.1"; FPKM "10.8323768717"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.497131"; cov "0.692308"; +chr13 Cufflinks exon 9406013 9406051 1000 . . gene_id "CUFF.50545"; transcript_id "CUFF.50545.1"; exon_number "1"; FPKM "10.8323768717"; frac "1.000000"; conf_lo "0.000000"; conf_hi "32.497131"; cov "0.692308"; +chr13 Cufflinks transcript 9413644 9413670 1000 . . gene_id "CUFF.50547"; transcript_id "CUFF.50547.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9413644 9413670 1000 . . gene_id "CUFF.50547"; transcript_id "CUFF.50547.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9414053 9414143 1000 . . gene_id "CUFF.50549"; transcript_id "CUFF.50549.1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks exon 9414053 9414143 1000 . . gene_id "CUFF.50549"; transcript_id "CUFF.50549.1"; exon_number "1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks transcript 9415960 9416015 1000 . . gene_id "CUFF.50551"; transcript_id "CUFF.50551.1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; +chr13 Cufflinks exon 9415960 9416015 1000 . . gene_id "CUFF.50551"; transcript_id "CUFF.50551.1"; exon_number "1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; +chr13 Cufflinks transcript 9442325 9442351 1000 . . gene_id "CUFF.50553"; transcript_id "CUFF.50553.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9442325 9442351 1000 . . gene_id "CUFF.50553"; transcript_id "CUFF.50553.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9517895 9517921 1000 . . gene_id "CUFF.50555"; transcript_id "CUFF.50555.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9517895 9517921 1000 . . gene_id "CUFF.50555"; transcript_id "CUFF.50555.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9584154 9584180 1000 . . gene_id "CUFF.50558"; transcript_id "CUFF.50558.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks exon 9584154 9584180 1000 . . gene_id "CUFF.50558"; transcript_id "CUFF.50558.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks transcript 9583821 9583888 1000 . . gene_id "CUFF.50557"; transcript_id "CUFF.50557.1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.997505"; cov "0.794118"; +chr13 Cufflinks exon 9583821 9583888 1000 . . gene_id "CUFF.50557"; transcript_id "CUFF.50557.1"; exon_number "1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.997505"; cov "0.794118"; +chr13 Cufflinks transcript 9585768 9585937 1000 . . gene_id "CUFF.50561"; transcript_id "CUFF.50561.1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.880598"; cov "0.635294"; +chr13 Cufflinks exon 9585768 9585937 1000 . . gene_id "CUFF.50561"; transcript_id "CUFF.50561.1"; exon_number "1"; FPKM "9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.880598"; cov "0.635294"; +chr13 Cufflinks transcript 9586173 9593034 1000 - . gene_id "CUFF.50563"; transcript_id "CUFF.50563.1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537"; +chr13 Cufflinks exon 9586173 9586218 1000 - . gene_id "CUFF.50563"; transcript_id "CUFF.50563.1"; exon_number "1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537"; +chr13 Cufflinks exon 9592999 9593034 1000 - . gene_id "CUFF.50563"; transcript_id "CUFF.50563.1"; exon_number "2"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537"; +chr13 Cufflinks transcript 9609217 9609243 1000 . . gene_id "CUFF.50566"; transcript_id "CUFF.50566.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9609217 9609243 1000 . . gene_id "CUFF.50566"; transcript_id "CUFF.50566.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9607682 9607717 1000 . . gene_id "CUFF.50565"; transcript_id "CUFF.50565.1"; FPKM "23.4701498888"; frac "1.000000"; conf_lo "0.000000"; conf_hi "56.661954"; cov "1.500000"; +chr13 Cufflinks exon 9607682 9607717 1000 . . gene_id "CUFF.50565"; transcript_id "CUFF.50565.1"; exon_number "1"; FPKM "23.4701498888"; frac "1.000000"; conf_lo "0.000000"; conf_hi "56.661954"; cov "1.500000"; +chr13 Cufflinks transcript 9678669 9678695 1000 . . gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9678669 9678695 1000 . . gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9667710 9667736 1000 . . gene_id "CUFF.50571"; transcript_id "CUFF.50571.1"; FPKM "140.7837465978"; frac "1.000000"; conf_lo "46.915532"; conf_hi "234.651961"; cov "8.997626"; +chr13 Cufflinks exon 9667710 9667736 1000 . . gene_id "CUFF.50571"; transcript_id "CUFF.50571.1"; exon_number "1"; FPKM "140.7837465978"; frac "1.000000"; conf_lo "46.915532"; conf_hi "234.651961"; cov "8.997626"; +chr13 Cufflinks transcript 9667815 9668061 1000 . . gene_id "CUFF.50573"; transcript_id "CUFF.50573.1"; FPKM "87.1763440808"; frac "1.000000"; conf_lo "62.754693"; conf_hi "111.597996"; cov "5.571525"; +chr13 Cufflinks exon 9667815 9668061 1000 . . gene_id "CUFF.50573"; transcript_id "CUFF.50573.1"; exon_number "1"; FPKM "87.1763440808"; frac "1.000000"; conf_lo "62.754693"; conf_hi "111.597996"; cov "5.571525"; +chr13 Cufflinks transcript 9668143 9668170 1000 . . gene_id "CUFF.50575"; transcript_id "CUFF.50575.1"; FPKM "82.8583537693"; frac "1.000000"; conf_lo "12.143066"; conf_hi "153.573642"; cov "5.295558"; +chr13 Cufflinks exon 9668143 9668170 1000 . . gene_id "CUFF.50575"; transcript_id "CUFF.50575.1"; exon_number "1"; FPKM "82.8583537693"; frac "1.000000"; conf_lo "12.143066"; conf_hi "153.573642"; cov "5.295558"; +chr13 Cufflinks transcript 9688931 9688970 1000 . . gene_id "CUFF.50577"; transcript_id "CUFF.50577.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks exon 9688931 9688970 1000 . . gene_id "CUFF.50577"; transcript_id "CUFF.50577.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks transcript 9684078 9685570 1000 . . gene_id "CUFF.50579"; transcript_id "CUFF.50579.1"; FPKM "107.1082431700"; frac "1.000000"; conf_lo "96.097777"; conf_hi "118.118710"; cov "6.845392"; +chr13 Cufflinks exon 9684078 9685570 1000 . . gene_id "CUFF.50579"; transcript_id "CUFF.50579.1"; exon_number "1"; FPKM "107.1082431700"; frac "1.000000"; conf_lo "96.097777"; conf_hi "118.118710"; cov "6.845392"; +chr13 Cufflinks transcript 9690151 9690234 1000 . . gene_id "CUFF.50581"; transcript_id "CUFF.50581.1"; FPKM "10.0586356666"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.283695"; cov "0.642857"; +chr13 Cufflinks exon 9690151 9690234 1000 . . gene_id "CUFF.50581"; transcript_id "CUFF.50581.1"; exon_number "1"; FPKM "10.0586356666"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.283695"; cov "0.642857"; +chr13 Cufflinks transcript 9694461 9694537 1000 . . gene_id "CUFF.50583"; transcript_id "CUFF.50583.1"; FPKM "16.4595856363"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.465478"; cov "1.051948"; +chr13 Cufflinks exon 9694461 9694537 1000 . . gene_id "CUFF.50583"; transcript_id "CUFF.50583.1"; exon_number "1"; FPKM "16.4595856363"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.465478"; cov "1.051948"; +chr13 Cufflinks transcript 9696900 9696976 1000 . . gene_id "CUFF.50585"; transcript_id "CUFF.50585.1"; FPKM "10.9730570909"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.491303"; cov "0.701299"; +chr13 Cufflinks exon 9696900 9696976 1000 . . gene_id "CUFF.50585"; transcript_id "CUFF.50585.1"; exon_number "1"; FPKM "10.9730570909"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.491303"; cov "0.701299"; +chr13 Cufflinks transcript 9725686 9725787 1000 . . gene_id "CUFF.50587"; transcript_id "CUFF.50587.1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118"; +chr13 Cufflinks exon 9725686 9725787 1000 . . gene_id "CUFF.50587"; transcript_id "CUFF.50587.1"; exon_number "1"; FPKM "12.4253734705"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov "0.794118"; +chr13 Cufflinks transcript 9725935 9726047 1000 . . gene_id "CUFF.50589"; transcript_id "CUFF.50589.1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814"; +chr13 Cufflinks exon 9725935 9726047 1000 . . gene_id "CUFF.50589"; transcript_id "CUFF.50589.1"; exon_number "1"; FPKM "11.2158238407"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov "0.716814"; +chr13 Cufflinks transcript 9739796 9739868 1000 . . gene_id "CUFF.50591"; transcript_id "CUFF.50591.1"; FPKM "11.5743204931"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.942882"; cov "0.739726"; +chr13 Cufflinks exon 9739796 9739868 1000 . . gene_id "CUFF.50591"; transcript_id "CUFF.50591.1"; exon_number "1"; FPKM "11.5743204931"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.942882"; cov "0.739726"; +chr13 Cufflinks transcript 9740164 9740202 1000 . . gene_id "CUFF.50593"; transcript_id "CUFF.50593.1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615"; +chr13 Cufflinks exon 9740164 9740202 1000 . . gene_id "CUFF.50593"; transcript_id "CUFF.50593.1"; exon_number "1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615"; +chr13 Cufflinks transcript 9740296 9740330 1000 . . gene_id "CUFF.50595"; transcript_id "CUFF.50595.1"; FPKM "48.2814511998"; frac "1.000000"; conf_lo "0.000000"; conf_hi "96.562902"; cov "3.085714"; +chr13 Cufflinks exon 9740296 9740330 1000 . . gene_id "CUFF.50595"; transcript_id "CUFF.50595.1"; exon_number "1"; FPKM "48.2814511998"; frac "1.000000"; conf_lo "0.000000"; conf_hi "96.562902"; cov "3.085714"; +chr13 Cufflinks transcript 9741046 9741127 1000 . . gene_id "CUFF.50597"; transcript_id "CUFF.50597.1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537"; +chr13 Cufflinks exon 9741046 9741127 1000 . . gene_id "CUFF.50597"; transcript_id "CUFF.50597.1"; exon_number "1"; FPKM "10.3039682439"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov "0.658537"; +chr13 Cufflinks transcript 9741590 9741694 1000 . . gene_id "CUFF.50599"; transcript_id "CUFF.50599.1"; FPKM "12.0703627999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.008017"; cov "0.771429"; +chr13 Cufflinks exon 9741590 9741694 1000 . . gene_id "CUFF.50599"; transcript_id "CUFF.50599.1"; exon_number "1"; FPKM "12.0703627999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "26.008017"; cov "0.771429"; +chr13 Cufflinks transcript 9741399 9741517 1000 . . gene_id "CUFF.50601"; transcript_id "CUFF.50601.1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "6.065348"; conf_hi "43.636146"; cov "1.588235"; +chr13 Cufflinks exon 9741399 9741517 1000 . . gene_id "CUFF.50601"; transcript_id "CUFF.50601.1"; exon_number "1"; FPKM "24.8507469411"; frac "1.000000"; conf_lo "6.065348"; conf_hi "43.636146"; cov "1.588235"; +chr13 Cufflinks transcript 9868979 9869072 1000 . . gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702"; +chr13 Cufflinks exon 9868979 9869072 1000 . . gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; exon_number "1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702"; +chr13 Cufflinks transcript 9872853 9872934 1000 . . gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805"; +chr13 Cufflinks exon 9872853 9872934 1000 . . gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; exon_number "1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805"; +chr13 Cufflinks transcript 9874731 9874997 1000 . . gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989"; +chr13 Cufflinks exon 9874731 9874997 1000 . . gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; exon_number "1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989"; +chr13 Cufflinks transcript 9875128 9875201 1000 . . gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks exon 9875128 9875201 1000 . . gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; exon_number "1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks transcript 9875323 9875349 1000 . . gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9875323 9875349 1000 . . gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9875425 9875480 1000 . . gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; +chr13 Cufflinks exon 9875425 9875480 1000 . . gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; exon_number "1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; +chr13 Cufflinks transcript 9876121 9876172 1000 . . gene_id "CUFF.50615"; transcript_id "CUFF.50615.1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.227507"; cov "1.038462"; +chr13 Cufflinks exon 9876121 9876172 1000 . . gene_id "CUFF.50615"; transcript_id "CUFF.50615.1"; exon_number "1"; FPKM "16.2485653076"; frac "1.000000"; conf_lo "0.000000"; conf_hi "39.227507"; cov "1.038462"; +chr13 Cufflinks transcript 9969155 9969237 1000 . . gene_id "CUFF.50617"; transcript_id "CUFF.50617.1"; FPKM "8.6756763125"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.966038"; cov "0.554471"; +chr13 Cufflinks exon 9969155 9969237 1000 . . gene_id "CUFF.50617"; transcript_id "CUFF.50617.1"; exon_number "1"; FPKM "8.6756763125"; frac "1.000000"; conf_lo "0.000000"; conf_hi "21.966038"; cov "0.554471"; +chr13 Cufflinks transcript 9986765 9986791 1000 . . gene_id "CUFF.50619"; transcript_id "CUFF.50619.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 9986765 9986791 1000 . . gene_id "CUFF.50619"; transcript_id "CUFF.50619.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 9987242 9987567 1000 . . gene_id "CUFF.50621"; transcript_id "CUFF.50621.1"; FPKM "10.3671827730"; frac "1.000000"; conf_lo "3.036478"; conf_hi "17.697888"; cov "0.662577"; +chr13 Cufflinks exon 9987242 9987567 1000 . . gene_id "CUFF.50621"; transcript_id "CUFF.50621.1"; exon_number "1"; FPKM "10.3671827730"; frac "1.000000"; conf_lo "3.036478"; conf_hi "17.697888"; cov "0.662577"; +chr13 Cufflinks transcript 10010160 10010265 1000 . . gene_id "CUFF.50623"; transcript_id "CUFF.50623.1"; FPKM "11.9564914528"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.762659"; cov "0.764151"; +chr13 Cufflinks exon 10010160 10010265 1000 . . gene_id "CUFF.50623"; transcript_id "CUFF.50623.1"; exon_number "1"; FPKM "11.9564914528"; frac "1.000000"; conf_lo "0.000000"; conf_hi "25.762659"; cov "0.764151"; +chr13 Cufflinks transcript 10010497 10010523 1000 . . gene_id "CUFF.50625"; transcript_id "CUFF.50625.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 10010497 10010523 1000 . . gene_id "CUFF.50625"; transcript_id "CUFF.50625.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 10012021 10012167 1000 . . gene_id "CUFF.50627"; transcript_id "CUFF.50627.1"; FPKM "11.4955836190"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.991167"; cov "0.734694"; +chr13 Cufflinks exon 10012021 10012167 1000 . . gene_id "CUFF.50627"; transcript_id "CUFF.50627.1"; exon_number "1"; FPKM "11.4955836190"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.991167"; cov "0.734694"; +chr13 Cufflinks transcript 10019657 10019683 1000 . . gene_id "CUFF.50629"; transcript_id "CUFF.50629.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks exon 10019657 10019683 1000 . . gene_id "CUFF.50629"; transcript_id "CUFF.50629.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks transcript 10024965 10025028 1000 . . gene_id "CUFF.50631"; transcript_id "CUFF.50631.1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov "0.843750"; +chr13 Cufflinks exon 10024965 10025028 1000 . . gene_id "CUFF.50631"; transcript_id "CUFF.50631.1"; exon_number "1"; FPKM "13.2019593124"; frac "1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov "0.843750"; +chr13 Cufflinks transcript 10082104 10082206 1000 . . gene_id "CUFF.50633"; transcript_id "CUFF.50633.1"; FPKM "8.2031591844"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.804178"; cov "0.524272"; +chr13 Cufflinks exon 10082104 10082206 1000 . . gene_id "CUFF.50633"; transcript_id "CUFF.50633.1"; exon_number "1"; FPKM "8.2031591844"; frac "1.000000"; conf_lo "0.000000"; conf_hi "19.804178"; cov "0.524272"; +chr13 Cufflinks transcript 10086419 10086446 1000 . . gene_id "CUFF.50635"; transcript_id "CUFF.50635.1"; FPKM "60.3518139997"; frac "1.000000"; conf_lo "0.000000"; conf_hi "120.703628"; cov "3.857143"; +chr13 Cufflinks exon 10086419 10086446 1000 . . gene_id "CUFF.50635"; transcript_id "CUFF.50635.1"; exon_number "1"; FPKM "60.3518139997"; frac "1.000000"; conf_lo "0.000000"; conf_hi "120.703628"; cov "3.857143"; +chr13 Cufflinks transcript 10086886 10086930 1000 . . gene_id "CUFF.50637"; transcript_id "CUFF.50637.1"; FPKM "18.7761199110"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.329563"; cov "1.200000"; +chr13 Cufflinks exon 10086886 10086930 1000 . . gene_id "CUFF.50637"; transcript_id "CUFF.50637.1"; exon_number "1"; FPKM "18.7761199110"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.329563"; cov "1.200000"; +chr13 Cufflinks transcript 10096818 10096844 1000 . . gene_id "CUFF.50639"; transcript_id "CUFF.50639.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 10096818 10096844 1000 . . gene_id "CUFF.50639"; transcript_id "CUFF.50639.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 10111271 10111358 1000 . . gene_id "CUFF.50641"; transcript_id "CUFF.50641.1"; FPKM "9.6014249545"; frac "1.000000"; conf_lo "0.000000"; conf_hi "23.179890"; cov "0.613636"; +chr13 Cufflinks exon 10111271 10111358 1000 . . gene_id "CUFF.50641"; transcript_id "CUFF.50641.1"; exon_number "1"; FPKM "9.6014249545"; frac "1.000000"; conf_lo "0.000000"; conf_hi "23.179890"; cov "0.613636"; +chr13 Cufflinks transcript 10182192 10182228 1000 . . gene_id "CUFF.50643"; transcript_id "CUFF.50643.1"; FPKM "34.2537322701"; frac "1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov "2.189189"; +chr13 Cufflinks exon 10182192 10182228 1000 . . gene_id "CUFF.50643"; transcript_id "CUFF.50643.1"; exon_number "1"; FPKM "34.2537322701"; frac "1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov "2.189189"; +chr13 Cufflinks transcript 10189009 10189035 1000 . . gene_id "CUFF.50645"; transcript_id "CUFF.50645.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 10189009 10189035 1000 . . gene_id "CUFF.50645"; transcript_id "CUFF.50645.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 10197772 10197798 1000 . . gene_id "CUFF.50647"; transcript_id "CUFF.50647.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 10197772 10197798 1000 . . gene_id "CUFF.50647"; transcript_id "CUFF.50647.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 10200086 10200124 1000 . . gene_id "CUFF.50649"; transcript_id "CUFF.50649.1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615"; +chr13 Cufflinks exon 10200086 10200124 1000 . . gene_id "CUFF.50649"; transcript_id "CUFF.50649.1"; exon_number "1"; FPKM "21.6647537435"; frac "1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov "1.384615"; +chr13 Cufflinks transcript 10213412 10213536 1000 . . gene_id "CUFF.50651"; transcript_id "CUFF.50651.1"; FPKM "13.5188063359"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.037613"; cov "0.864000"; +chr13 Cufflinks exon 10213412 10213536 1000 . . gene_id "CUFF.50651"; transcript_id "CUFF.50651.1"; exon_number "1"; FPKM "13.5188063359"; frac "1.000000"; conf_lo "0.000000"; conf_hi "27.037613"; cov "0.864000"; +chr13 Cufflinks transcript 10223893 10223941 1000 . . gene_id "CUFF.50653"; transcript_id "CUFF.50653.1"; FPKM "17.2433754285"; frac "1.000000"; conf_lo "0.000000"; conf_hi "41.629191"; cov "1.102041"; +chr13 Cufflinks exon 10223893 10223941 1000 . . gene_id "CUFF.50653"; transcript_id "CUFF.50653.1"; exon_number "1"; FPKM "17.2433754285"; frac "1.000000"; conf_lo "0.000000"; conf_hi "41.629191"; cov "1.102041"; +chr13 Cufflinks transcript 10289392 10289437 1000 . . gene_id "CUFF.50655"; transcript_id "CUFF.50655.1"; FPKM "18.3679433912"; frac "1.000000"; conf_lo "0.000000"; conf_hi "44.344138"; cov "1.173913"; +chr13 Cufflinks exon 10289392 10289437 1000 . . gene_id "CUFF.50655"; transcript_id "CUFF.50655.1"; exon_number "1"; FPKM "18.3679433912"; frac "1.000000"; conf_lo "0.000000"; conf_hi "44.344138"; cov "1.173913"; +chr13 Cufflinks transcript 10326745 10326771 1000 . . gene_id "CUFF.50657"; transcript_id "CUFF.50657.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 10326745 10326771 1000 . . gene_id "CUFF.50657"; transcript_id "CUFF.50657.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 10346675 10346701 1000 . . gene_id "CUFF.50659"; transcript_id "CUFF.50659.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 10346675 10346701 1000 . . gene_id "CUFF.50659"; transcript_id "CUFF.50659.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 10337071 10337097 1000 . . gene_id "CUFF.50661"; transcript_id "CUFF.50661.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 10337071 10337097 1000 . . gene_id "CUFF.50661"; transcript_id "CUFF.50661.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 10337141 10337167 1000 . . gene_id "CUFF.50663"; transcript_id "CUFF.50663.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 10337141 10337167 1000 . . gene_id "CUFF.50663"; transcript_id "CUFF.50663.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 10344376 10344402 1000 . . gene_id "CUFF.50665"; transcript_id "CUFF.50665.1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks exon 10344376 10344402 1000 . . gene_id "CUFF.50665"; transcript_id "CUFF.50665.1"; exon_number "1"; FPKM "46.9402997776"; frac "1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov "3.000000"; +chr13 Cufflinks transcript 10344976 10345002 1000 . . gene_id "CUFF.50667"; transcript_id "CUFF.50667.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 10344976 10345002 1000 . . gene_id "CUFF.50667"; transcript_id "CUFF.50667.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 10345008 10345034 1000 . . gene_id "CUFF.50669"; transcript_id "CUFF.50669.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 10345008 10345034 1000 . . gene_id "CUFF.50669"; transcript_id "CUFF.50669.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 10345484 10345510 1000 . . gene_id "CUFF.50671"; transcript_id "CUFF.50671.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 10345484 10345510 1000 . . gene_id "CUFF.50671"; transcript_id "CUFF.50671.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks transcript 10345538 10345564 1000 . . gene_id "CUFF.50673"; transcript_id "CUFF.50673.1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; +chr13 Cufflinks exon 10345538 10345564 1000 . . gene_id "CUFF.50673"; transcript_id "CUFF.50673.1"; exon_number "1"; FPKM "15.6467665925"; frac "1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov "1.000000"; --- a/tools/new_operations/subtract.xml +++ b/tools/new_operations/subtract.xml @@ -1,14 +1,44 @@ <tool id="gops_subtract_1" name="Subtract"><description>the intervals of two queries</description> - <command interpreter="python">gops_subtract.py $input1 $input2 $output -1 ${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol} -2 ${input2.metadata.chromCol},${input2.metadata.startCol},${input2.metadata.endCol},${input2.metadata.strandCol} -m $min $returntype</command> + <command interpreter="python">gops_subtract.py + #if $inputs.type == "BED": + $inputs.bed_input1 $inputs.bed_input2 $output + -1 ${inputs.bed_input1.metadata.chromCol},${inputs.bed_input1.metadata.startCol},${inputs.bed_input1.metadata.endCol},${inputs.bed_input1.metadata.strandCol} + -2 ${inputs.bed_input2.metadata.chromCol},${inputs.bed_input2.metadata.startCol},${inputs.bed_input2.metadata.endCol},${inputs.bed_input2.metadata.strandCol} + #else + $inputs.gff_input1 $inputs.gff_input2 $output + ## TODO: can we use metadata like above to set these columns rather than hardcode them? + -1 1,4,5,7 + -2 1,4,5,7 + --gff + #end if + -m $min $returntype + </command><inputs> - <param format="interval" name="input2" type="data" help="Second query"> - <label>Subtract</label> - </param> + <conditional name="inputs"> + <param name="type" type="select" label="File Format to Use"> + <option value="BED">BED</option> + <option value="GFF">GFF</option> + </param> + <when value="BED"> + <param format="interval" name="bed_input2" type="data" help="Second query"> + <label>Subtract</label> + </param> - <param format="interval" name="input1" type="data" help="First query"> - <label>from</label> - </param> + <param format="interval" name="bed_input1" type="data" help="First query"> + <label>from</label> + </param> + </when> + <when value="GFF"> + <param format="gff" name="gff_input2" type="data" help="Second query"> + <label>Subtract</label> + </param> + + <param format="gff" name="gff_input1" type="data" help="First query"> + <label>from</label> + </param> + </when> + </conditional><param name="returntype" type="select" label="Return" help="of the first query (see figure below)"><option value="">Intervals with no overlap</option> @@ -21,38 +51,56 @@ </inputs><outputs> - <data format="input" name="output" metadata_source="input1" /> + <data format="input" name="output"> + #if inputs.type == "BED": + metadata_source="inputs.bed_input1" + #else: + metadata_source="inputs.gff_input1" + #end if + </data></outputs><code file="operation_filter.py"/><tests><test> - <param name="input1" value="1.bed" /> - <param name="input2" value="2.bed" /> + <param name="type" value="BED"/> + <param name="bed_input1" value="1.bed" /> + <param name="bed_input2" value="2.bed" /><param name="min" value="1" /><param name="returntype" value="" /><output name="output" file="gops-subtract.dat" /></test><test> - <param name="input1" value="1.bed" /> - <param name="input2" value="2_mod.bed" ftype="interval"/> + <param name="type" value="BED"/> + <param name="bed_input1" value="1.bed" /> + <param name="bed_input2" value="2_mod.bed" ftype="interval"/><param name="min" value="1" /><param name="returntype" value="" /><output name="output" file="gops_subtract_diffCols.dat" /></test><test> - <param name="input1" value="gops_subtract_bigint.bed" /> - <param name="input2" value="2.bed" /> + <param name="type" value="BED"/> + <param name="bed_input1" value="gops_subtract_bigint.bed" /> + <param name="bed_input2" value="2.bed" /><param name="min" value="1" /><param name="returntype" value="" /><output name="output" file="gops-subtract.dat" /></test><test> - <param name="input1" value="1.bed" /> - <param name="input2" value="2.bed" /> + <param name="type" value="BED"/> + <param name="bed_input1" value="1.bed" /> + <param name="bed_input2" value="2.bed" /><param name="min" value="10" /><param name="returntype" value="Non-overlapping pieces of intervals" /><output name="output" file="gops-subtract-p.dat" /></test> + <test> + <param name="type" value="GFF"/> + <param name="gff_input1" value="gops_subtract_in1.gff" /> + <param name="gff_input2" value="gops_subtract_in2.gff" /> + <param name="min" value="1" /> + <param name="returntype" value="" /> + <output name="output" file="gops_subtract_out1.gff" /> + </test></tests><help> --- /dev/null +++ b/test-data/gops_subtract_out1.gff @@ -0,0 +1,67 @@ +chr13 Cufflinks transcript 3405463 3405542 1000 + . gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914"; +chr13 Cufflinks exon 3405463 3405542 1000 + . gene_id "CUFF.50189"; transcript_id "CUFF.50189.1"; exon_number "1"; FPKM "6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov "0.406914"; +chr13 Cufflinks transcript 3473337 3473372 1000 + . gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000"; +chr13 Cufflinks exon 3473337 3473372 1000 + . gene_id "CUFF.50191"; transcript_id "CUFF.50191.1"; exon_number "1"; FPKM "11.7350749444"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov "0.750000"; +chr13 Cufflinks transcript 3490319 3490350 1000 + . gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250"; +chr13 Cufflinks exon 3490319 3490350 1000 + . gene_id "CUFF.50193"; transcript_id "CUFF.50193.1"; exon_number "1"; FPKM "39.6058779373"; frac "1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov "2.531250"; +chr13 Cufflinks exon 3612965 3613028 1000 - . gene_id "CUFF.50207"; transcript_id "CUFF.50207.1"; exon_number "2"; FPKM "19.6171377865"; frac "1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov "1.253750"; +chr13 Cufflinks transcript 3612524 3612550 1000 + . gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813"; +chr13 Cufflinks exon 3612524 3612550 1000 + . gene_id "CUFF.50213"; transcript_id "CUFF.50213.1"; exon_number "1"; FPKM "117.3321730764"; frac "1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov "7.498813"; +chr13 Cufflinks transcript 3652248 3652287 1000 + . gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks exon 3652248 3652287 1000 + . gene_id "CUFF.50225"; transcript_id "CUFF.50225.1"; exon_number "1"; FPKM "21.1231348999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov "1.350000"; +chr13 Cufflinks transcript 3652708 3652757 1000 + . gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000"; +chr13 Cufflinks exon 3652708 3652757 1000 + . gene_id "CUFF.50227"; transcript_id "CUFF.50227.1"; exon_number "1"; FPKM "16.8985079199"; frac "1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov "1.080000"; +chr13 Cufflinks transcript 3652858 3652892 1000 + . gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857"; +chr13 Cufflinks exon 3652858 3652892 1000 + . gene_id "CUFF.50229"; transcript_id "CUFF.50229.1"; exon_number "1"; FPKM "24.1407255999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov "1.542857"; +chr13 Cufflinks transcript 3881504 3881530 1000 + . gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3881504 3881530 1000 + . gene_id "CUFF.50233"; transcript_id "CUFF.50233.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 3940646 3940672 1000 + . gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 3940646 3940672 1000 + . gene_id "CUFF.50239"; transcript_id "CUFF.50239.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4253585 4253611 1000 + . gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 4253585 4253611 1000 + . gene_id "CUFF.50251"; transcript_id "CUFF.50251.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 4356816 4356842 1000 + . gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626"; +chr13 Cufflinks exon 4356816 4356842 1000 + . gene_id "CUFF.50253"; transcript_id "CUFF.50253.1"; exon_number "1"; FPKM "31.2563804501"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov "1.997626"; +chr13 Cufflinks exon 5872240 5872268 1000 - . gene_id "CUFF.50289"; transcript_id "CUFF.50289.1"; exon_number "2"; FPKM "7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov "0.482143"; +chr13 Cufflinks transcript 6205097 6205155 1000 + . gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254"; +chr13 Cufflinks exon 6205097 6205155 1000 + . gene_id "CUFF.50321"; transcript_id "CUFF.50321.1"; exon_number "1"; FPKM "14.3207694237"; frac "1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov "0.915254"; +chr13 Cufflinks transcript 6227260 6227293 1000 + . gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234"; +chr13 Cufflinks exon 6227260 6227293 1000 + . gene_id "CUFF.50323"; transcript_id "CUFF.50323.1"; exon_number "1"; FPKM "18.6233083846"; frac "1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov "1.190234"; +chr13 Cufflinks transcript 6795860 6795886 1000 + . gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 6795860 6795886 1000 + . gene_id "CUFF.50399"; transcript_id "CUFF.50399.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 7155940 7155966 1000 + . gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 7155940 7155966 1000 + . gene_id "CUFF.50401"; transcript_id "CUFF.50401.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 7676033 7676123 1000 + . gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks exon 7676033 7676123 1000 + . gene_id "CUFF.50403"; transcript_id "CUFF.50403.1"; exon_number "1"; FPKM "9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov "0.593407"; +chr13 Cufflinks transcript 8766868 8767005 1000 + . gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609"; +chr13 Cufflinks exon 8766868 8767005 1000 + . gene_id "CUFF.50461"; transcript_id "CUFF.50461.1"; exon_number "1"; FPKM "12.2452955941"; frac "1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov "0.782609"; +chr13 Cufflinks transcript 8767194 8767393 1000 + . gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000"; +chr13 Cufflinks exon 8767194 8767393 1000 + . gene_id "CUFF.50463"; transcript_id "CUFF.50463.1"; exon_number "1"; FPKM "12.6738809399"; frac "1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov "0.810000"; +chr13 Cufflinks transcript 8767461 8767531 1000 + . gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845"; +chr13 Cufflinks exon 8767461 8767531 1000 + . gene_id "CUFF.50465"; transcript_id "CUFF.50465.1"; exon_number "1"; FPKM "17.8505365351"; frac "1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov "1.140845"; +chr13 Cufflinks transcript 8767695 8767885 1000 + . gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890"; +chr13 Cufflinks exon 8767695 8767885 1000 + . gene_id "CUFF.50467"; transcript_id "CUFF.50467.1"; exon_number "1"; FPKM "17.6947726910"; frac "1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov "1.130890"; +chr13 Cufflinks transcript 8767947 8767992 1000 + . gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870"; +chr13 Cufflinks exon 8767947 8767992 1000 + . gene_id "CUFF.50469"; transcript_id "CUFF.50469.1"; exon_number "1"; FPKM "27.5519150868"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov "1.760870"; +chr13 Cufflinks transcript 8784118 8784193 1000 + . gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789"; +chr13 Cufflinks exon 8784118 8784193 1000 + . gene_id "CUFF.50471"; transcript_id "CUFF.50471.1"; exon_number "1"; FPKM "16.6761591315"; frac "1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov "1.065789"; +chr13 Cufflinks transcript 8965678 8965704 1000 + . gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 8965678 8965704 1000 + . gene_id "CUFF.50499"; transcript_id "CUFF.50499.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9272120 9272153 1000 + . gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350"; +chr13 Cufflinks exon 9272120 9272153 1000 + . gene_id "CUFF.50507"; transcript_id "CUFF.50507.1"; exon_number "1"; FPKM "24.8212432986"; frac "1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov "1.586350"; +chr13 Cufflinks exon 9172357 9172437 1000 + . gene_id "CUFF.50509"; transcript_id "CUFF.50509.1"; exon_number "2"; FPKM "41.4918721248"; frac "1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov "2.651786"; +chr13 Cufflinks transcript 9172647 9173652 1000 + . gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553"; +chr13 Cufflinks exon 9172647 9173652 1000 + . gene_id "CUFF.50513"; transcript_id "CUFF.50513.1"; exon_number "1"; FPKM "111.9143215254"; frac "1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov "7.152553"; +chr13 Cufflinks transcript 9678669 9678695 1000 + . gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9678669 9678695 1000 + . gene_id "CUFF.50569"; transcript_id "CUFF.50569.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9868979 9869072 1000 + . gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702"; +chr13 Cufflinks exon 9868979 9869072 1000 + . gene_id "CUFF.50603"; transcript_id "CUFF.50603.1"; exon_number "1"; FPKM "13.4828520638"; frac "1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov "0.861702"; +chr13 Cufflinks transcript 9872853 9872934 1000 + . gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805"; +chr13 Cufflinks exon 9872853 9872934 1000 + . gene_id "CUFF.50605"; transcript_id "CUFF.50605.1"; exon_number "1"; FPKM "15.4559523658"; frac "1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov "0.987805"; +chr13 Cufflinks transcript 9874731 9874997 1000 + . gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989"; +chr13 Cufflinks exon 9874731 9874997 1000 + . gene_id "CUFF.50607"; transcript_id "CUFF.50607.1"; exon_number "1"; FPKM "12.6580583670"; frac "1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov "0.808989"; +chr13 Cufflinks transcript 9875128 9875201 1000 + . gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks exon 9875128 9875201 1000 + . gene_id "CUFF.50609"; transcript_id "CUFF.50609.1"; exon_number "1"; FPKM "22.8358215134"; frac "1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov "1.459459"; +chr13 Cufflinks transcript 9875323 9875349 1000 + . gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks exon 9875323 9875349 1000 + . gene_id "CUFF.50611"; transcript_id "CUFF.50611.1"; exon_number "1"; FPKM "31.2935331850"; frac "1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov "2.000000"; +chr13 Cufflinks transcript 9875425 9875480 1000 + . gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; +chr13 Cufflinks exon 9875425 9875480 1000 + . gene_id "CUFF.50613"; transcript_id "CUFF.50613.1"; exon_number "1"; FPKM "15.0879534999"; frac "1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov "0.964286"; --- /dev/null +++ b/lib/galaxy/tools/util/gff_util.py @@ -0,0 +1,28 @@ +""" +Provides utilities for working with GFF files. +""" + +from bx.intervals.io import NiceReaderWrapper, GenomicInterval + +class GFFReaderWrapper( NiceReaderWrapper ): + """ + Reader wrapper converts GFF format--starting and ending coordinates are 1-based, closed--to the 'traditional' interval format--0 based, + half-open. This is useful when using GFF files as inputs to tools that expect traditional interval format. + """ + def parse_row( self, line ): + interval = GenomicInterval( self, line.split( "\t" ), self.chrom_col, self.start_col, self.end_col, self.strand_col, self.default_strand, fix_strand=self.fix_strand ) + # Change from 1-based to 0-based format. + interval.start -= 1 + # Add 1 to end to move from open to closed format for end coordinate. + interval.end += 1 + return interval + +def convert_to_gff_coordinates( interval ): + """ + Converts a GenomicInterval's coordinates to GFF format. + """ + if type( interval ) is GenomicInterval: + interval.start += 1 + interval.end -= 1 + return interval + return interval

1 0

galaxy-dist commit 6612433f8b85: Set 3000 as the theoretical maximum and 1500 as the current maximum for the number of items that a search+select box can accept. These numbers balance capacity and performance.
by commits-noreply＠bitbucket.org 08 Jun '10

08 Jun '10

# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User jeremy goecks <jeremy.goecks(a)emory.edu> # Date 1275944604 14400 # Node ID 6612433f8b85047033257bf8d66375fa7839b9e1 # Parent f71716f286ee0c2e807c22dff2abd54815f14554 Set 3000 as the theoretical maximum and 1500 as the current maximum for the number of items that a search+select box can accept. These numbers balance capacity and performance. --- a/static/scripts/galaxy.base.js +++ b/static/scripts/galaxy.base.js @@ -1,7 +1,3 @@ -$(document).ready(function() { - replace_big_select_inputs(); -}); - $.fn.makeAbsolute = function(rebase) { return this.each(function() { var el = $(this); @@ -145,19 +141,22 @@ function naturalSort(a, b){ } // Replace select box with a text input box + autocomplete. -function replace_big_select_inputs(min_length) { +function replace_big_select_inputs(min_length, max_length) { // To do replace, jQuery's autocomplete plugin must be loaded. if (!jQuery().autocomplete) return; - // Set default for min_length. + // Set default for min_length and max_length if (min_length === undefined) min_length = 20; + if (max_length === undefined) + max_length = 3000; $('select').each( function() { var select_elt = $(this); - // Skip if # of options < min length. - if (select_elt.find('option').length < min_length) + // Make sure that options is within range. + var num_options = select_elt.find('option').length; + if ( (num_options < min_length) || (num_options > max_length) ) return; // Skip multi-select because widget cannot handle multi-select. @@ -211,7 +210,7 @@ function replace_big_select_inputs(min_l select_options = select_options.sort(naturalSort); // Do autocomplete. - var autocomplete_options = { selectFirst: false, autoFill: false, mustMatch: false, matchContains: true, max: 1000, minChars : 0, hideForLessThanMinChars : false }; + var autocomplete_options = { selectFirst: false, autoFill: false, mustMatch: false, matchContains: true, max: max_length, minChars : 0, hideForLessThanMinChars : false }; text_input_elt.autocomplete(select_options, autocomplete_options); // Replace select with text input. @@ -481,4 +480,7 @@ function commatize( number ) { } // Make popup menus. make_popup_menus(); + + // Replace big selects. + replace_big_select_inputs(20, 1500); }); --- a/static/scripts/packed/galaxy.base.js +++ b/static/scripts/packed/galaxy.base.js @@ -1,1 +1,1 @@ -$(document).ready(function(){replace_big_select_inputs()});$.fn.makeAbsolute=function(a){return this.each(function(){var b=$(this);var c=b.position();b.css({position:"absolute",marginLeft:0,marginTop:0,top:c.top,left:c.left,right:$(window).width()-(c.left+b.width())});if(a){b.remove().appendTo("body")}})};function ensure_popup_helper(){if($("#popup-helper").length===0){$("<div id='popup-helper'/>").css({background:"white",opacity:0,zIndex:15000,position:"absolute",top:0,left:0,width:"100%",height:"100%"}).appendTo("body").hide()}}function attach_popupmenu(b,d){var a=function(){d.unbind().hide();$("#popup-helper").unbind("click.popupmenu").hide()};var c=function(g){$("#popup-helper").bind("click.popupmenu",a).show();d.click(a).css({left:0,top:-1000}).show();var f=g.pageX-d.width()/2;f=Math.min(f,$(document).scrollLeft()+$(window).width()-$(d).width()-20);f=Math.max(f,$(document).scrollLeft()+20);d.css({top:g.pageY-5,left:f});return false};$(b).click(c)}function make_popupmenu (c,b){ensure_popup_helper();var a=$("<ul id='"+c.attr("id")+"-menu'></ul>");$.each(b,function(f,e){if(e){$("<li/>").html(f).click(e).appendTo(a)}else{$("<li class='head'/>").html(f).appendTo(a)}});var d=$("<div class='popmenu-wrapper'>");d.append(a).append("<div class='overlay-border'>").css("position","absolute").appendTo("body").hide();attach_popupmenu(c,d)}function make_popup_menus(){jQuery("div[popupmenu]").each(function(){var c={};$(this).find("a").each(function(){var b=$(this).attr("confirm"),d=$(this).attr("href"),e=$(this).attr("target");c[$(this).text()]=function(){if(!b||confirm(b)){var g=window;if(e=="_parent"){g=window.parent}else{if(e=="_top"){g=window.top}}g.location=d}}});var a=$("#"+$(this).attr("popupmenu"));make_popupmenu(a,c);$(this).remove();a.addClass("popup").show()})}function array_length(b){if(b.length){return b.length}var c=0;for(var a in b){c++}return c}function naturalSort(i,g){var 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1 0

galaxy-dist commit 37f4420ba3fc: Bug fix for handling 'spaces to tab' for non-binary composite datatype files.
by commits-noreply＠bitbucket.org 08 Jun '10

08 Jun '10

# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Dan Blankenberg <dan(a)bx.psu.edu> # Date 1275939260 14400 # Node ID 37f4420ba3fcf9eb0fd097cf812ad91cc2824f99 # Parent 7de1adaf5628e04e2da0d948f03d08cb5ce5d7f3 Bug fix for handling 'spaces to tab' for non-binary composite datatype files. Add upload tests for testing 'space to tab' when uploading composite and non-composite datatypes. --- a/test/functional/test_get_data.py +++ b/test/functional/test_get_data.py @@ -4,14 +4,16 @@ from galaxy.model.mapping import context from base.twilltestcase import TwillTestCase class UploadData( TwillTestCase ): - def test_0005_upload_file( self ): - """Test uploading 1.bed, NOT setting the file format""" + def test_0000_setup_upload_tests( self ): + """Configuring upload tests, setting admin_user""" self.logout() self.login( email='test(a)bx.psu.edu' ) global admin_user admin_user = sa_session.query( galaxy.model.User ) \ .filter( galaxy.model.User.table.c.email=='test(a)bx.psu.edu' ) \ .one() + def test_0005_upload_file( self ): + """Test uploading 1.bed, NOT setting the file format""" history = sa_session.query( galaxy.model.History ) \ .filter( and_( galaxy.model.History.table.c.deleted==False, galaxy.model.History.table.c.user_id==admin_user.id ) ) \ @@ -25,6 +27,21 @@ class UploadData( TwillTestCase ): self.verify_dataset_correctness( '1.bed', hid=str( hda.hid ) ) self.check_history_for_string( "<th>1.Chrom</th><th>2.Start</th><th>3.End</th>" ) self.delete_history( id=self.security.encode_id( history.id ) ) + def test_0006_upload_file( self ): + """Test uploading 1.bed.spaces, with space to tab selected, NOT setting the file format""" + history = sa_session.query( galaxy.model.History ) \ + .filter( and_( galaxy.model.History.table.c.deleted==False, + galaxy.model.History.table.c.user_id==admin_user.id ) ) \ + .order_by( desc( galaxy.model.History.table.c.create_time ) ) \ + .first() + self.upload_file( '1.bed.spaces', space_to_tab = True ) + hda = sa_session.query( galaxy.model.HistoryDatasetAssociation ) \ + .order_by( desc( galaxy.model.HistoryDatasetAssociation.table.c.create_time ) ) \ + .first() + assert hda is not None, "Problem retrieving hda from database" + self.verify_dataset_correctness( '1.bed', hid=str( hda.hid ) ) + self.check_history_for_string( "<th>1.Chrom</th><th>2.Start</th><th>3.End</th>" ) + self.delete_history( id=self.security.encode_id( history.id ) ) def test_0010_upload_file( self ): """Test uploading 4.bed.gz, manually setting the file format""" self.check_history_for_string( 'Your history is empty' ) @@ -174,15 +191,36 @@ class UploadData( TwillTestCase ): .order_by( desc( galaxy.model.History.table.c.create_time ) ) \ .first() # lped data types include a ped_file and a map_file ( which is binary ) - self.upload_composite_datatype_file( 'lped', ped_file='tinywga.ped', map_file='tinywga.map', base_name='rgenetics' ) + self.upload_file( None, ftype='lped', metadata = [ { 'name':'base_name', 'value':'rgenetics' } ], composite_data = [ { 'name':'ped_file', 'value':'tinywga.ped' }, { 'name':'map_file', 'value':'tinywga.map'} ] ) # Get the latest hid for testing hda = sa_session.query( galaxy.model.HistoryDatasetAssociation ) \ .order_by( desc( galaxy.model.HistoryDatasetAssociation.table.c.create_time ) ) \ .first() assert hda is not None, "Problem retrieving hda from database" # We'll test against the resulting ped file and map file for correctness - self.verify_composite_datatype_file_content( 'rgenetics.ped', str( hda.id ) ) - self.verify_composite_datatype_file_content( 'rgenetics.map', str( hda.id ) ) + self.verify_composite_datatype_file_content( 'tinywga.ped', str( hda.id ), base_name = 'rgenetics.ped' ) + self.verify_composite_datatype_file_content( 'tinywga.map', str( hda.id ), base_name = 'rgenetics.map' ) + self.check_history_for_string( "rgenetics" ) + self.delete_history( id=self.security.encode_id( history.id ) ) + def test_0056_upload_file( self ): + """Test uploading lped composite datatype file, manually setting the file format, and using space to tab on one file (tinywga.ped)""" + # Logged in as admin_user + self.check_history_for_string( 'Your history is empty' ) + history = sa_session.query( galaxy.model.History ) \ + .filter( and_( galaxy.model.History.table.c.deleted==False, + galaxy.model.History.table.c.user_id==admin_user.id ) ) \ + .order_by( desc( galaxy.model.History.table.c.create_time ) ) \ + .first() + # lped data types include a ped_file and a map_file ( which is binary ) + self.upload_file( None, ftype='lped', metadata = [ { 'name':'base_name', 'value':'rgenetics' } ], composite_data = [ { 'name':'ped_file', 'value':'tinywga.ped', 'space_to_tab':True }, { 'name':'map_file', 'value':'tinywga.map'} ] ) + # Get the latest hid for testing + hda = sa_session.query( galaxy.model.HistoryDatasetAssociation ) \ + .order_by( desc( galaxy.model.HistoryDatasetAssociation.table.c.create_time ) ) \ + .first() + assert hda is not None, "Problem retrieving hda from database" + # We'll test against the resulting ped file and map file for correctness + self.verify_composite_datatype_file_content( 'tinywga.ped.space_to_tab', str( hda.id ), base_name = 'rgenetics.ped' ) + self.verify_composite_datatype_file_content( 'tinywga.map', str( hda.id ), base_name = 'rgenetics.map' ) self.check_history_for_string( "rgenetics" ) self.delete_history( id=self.security.encode_id( history.id ) ) def test_0060_upload_file( self ): @@ -195,16 +233,16 @@ class UploadData( TwillTestCase ): .order_by( desc( galaxy.model.History.table.c.create_time ) ) \ .first() # pbed data types include a bim_file, a bed_file and a fam_file - self.upload_composite_datatype_file( 'pbed', bim_file='tinywga.bim', bed_file='tinywga.bed', fam_file='tinywga.fam', base_name='rgenetics' ) + self.upload_file( None, ftype='pbed', metadata = [ { 'name':'base_name', 'value':'rgenetics' } ], composite_data = [ { 'name':'bim_file', 'value':'tinywga.bim' }, { 'name':'bed_file', 'value':'tinywga.bed'}, { 'name':'fam_file', 'value':'tinywga.fam' } ] ) # Get the latest hid for testing hda = sa_session.query( galaxy.model.HistoryDatasetAssociation ) \ .order_by( desc( galaxy.model.HistoryDatasetAssociation.table.c.create_time ) ) \ .first() assert hda is not None, "Problem retrieving hda from database" # We'll test against the resulting ped file and map file for correctness - self.verify_composite_datatype_file_content( 'rgenetics.bim', str( hda.id ) ) - self.verify_composite_datatype_file_content( 'rgenetics.bed', str( hda.id ) ) - self.verify_composite_datatype_file_content( 'rgenetics.fam', str( hda.id ) ) + self.verify_composite_datatype_file_content( 'tinywga.bim', str( hda.id ), base_name = 'rgenetics.bim' ) + self.verify_composite_datatype_file_content( 'tinywga.bed', str( hda.id ), base_name = 'rgenetics.bed' ) + self.verify_composite_datatype_file_content( 'tinywga.fam', str( hda.id ), base_name = 'rgenetics.fam' ) self.check_history_for_string( "rgenetics" ) self.delete_history( id=self.security.encode_id( history.id ) ) def test_0065_upload_file( self ): --- /dev/null +++ b/test-data/tinywga.ped.space_to_tab @@ -0,0 +1,40 @@ +101 1 3 2 2 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1 3 3 2 4 1 3 3 1 1 3 +117 1 3 2 2 2 2 2 4 2 3 3 3 3 3 3 4 2 1 1 2 2 1 1 2 2 4 2 2 4 3 1 4 4 1 1 2 2 2 2 1 1 1 1 1 1 3 3 2 2 1 1 3 3 1 1 +117 2 0 0 2 1 2 2 4 4 1 3 3 3 3 3 2 2 1 3 2 2 1 1 2 2 4 2 4 4 1 1 4 4 1 1 2 2 2 2 1 1 1 1 1 1 3 3 2 4 1 3 3 1 1 3 +117 3 0 0 1 1 2 2 4 2 3 3 3 3 3 3 4 2 1 1 2 2 1 1 2 2 4 2 2 4 3 1 4 4 1 1 2 2 2 2 1 1 1 1 1 1 3 3 2 4 1 3 3 1 1 3 +12 1 3 2 1 2 2 2 4 4 1 3 3 3 3 3 2 2 3 3 2 2 1 1 2 2 2 2 4 4 1 1 4 4 1 1 2 2 2 2 1 1 3 1 1 1 3 3 2 4 3 3 1 1 3 3 +12 2 0 0 2 1 2 2 4 4 1 3 3 3 3 3 2 2 3 3 2 2 1 1 2 2 2 2 4 4 1 1 4 4 1 1 2 2 2 2 1 1 3 1 1 1 3 3 2 4 3 3 1 1 3 3 +12 3 0 0 1 1 2 2 4 2 1 3 1 3 3 1 2 2 3 3 1 2 3 1 2 2 2 2 2 4 3 1 4 4 1 1 2 2 2 2 1 1 3 1 1 1 3 3 2 4 3 3 1 1 3 3 +13 1 3 2 1 2 4 2 4 2 1 3 3 3 3 1 2 2 3 3 2 2 1 1 2 2 2 2 4 4 1 1 3 4 1 1 2 2 4 2 1 1 3 1 1 1 3 3 2 4 3 3 1 1 3 3 +13 2 0 0 2 1 4 2 2 2 3 3 1 3 1 1 2 2 3 3 1 2 3 1 2 2 2 2 2 4 3 1 3 4 1 1 2 2 4 2 1 1 1 1 1 1 0 0 0 0 3 3 1 1 3 3 +13 3 0 0 1 1 2 2 4 4 1 3 3 3 3 3 2 2 1 3 1 2 3 1 2 2 2 2 2 4 3 1 4 4 3 1 2 2 2 2 1 1 3 1 1 1 3 3 2 2 3 3 1 1 3 3 +1334 1 10 11 1 2 2 2 4 2 3 3 1 3 3 1 2 2 1 3 1 2 3 1 4 2 4 2 2 4 3 1 4 4 1 1 2 2 2 2 1 1 1 1 1 1 3 3 4 4 3 3 1 1 3 3 +1334 10 0 0 1 1 4 2 4 2 3 3 1 3 3 1 2 2 1 3 2 2 1 1 4 2 4 2 4 4 1 1 3 4 1 1 2 2 4 2 3 1 1 1 2 1 3 3 2 4 1 3 3 1 1 3 +1334 11 0 0 2 1 2 2 2 2 3 3 1 1 1 1 2 2 3 3 1 1 3 3 2 2 2 2 2 2 3 3 4 4 1 1 2 2 2 2 1 1 1 1 1 1 3 3 4 4 3 3 1 1 3 3 +1334 12 0 0 1 1 4 2 2 2 3 3 1 3 1 1 2 2 3 3 2 2 1 1 2 2 4 2 4 4 1 1 3 4 1 1 2 2 4 2 3 1 1 1 2 1 3 3 2 4 1 3 3 1 1 3 +1334 13 0 0 2 1 4 2 4 2 3 3 1 3 3 1 4 2 1 3 2 2 1 1 2 2 2 2 2 4 3 1 3 4 1 1 2 2 4 2 1 1 1 1 1 1 3 3 2 4 1 3 3 1 1 3 +1334 2 12 13 2 2 4 4 2 2 3 3 1 3 1 1 2 2 3 3 2 2 1 1 2 2 2 2 4 4 1 1 3 3 1 1 2 2 4 4 3 1 1 1 2 1 3 3 2 4 1 3 3 1 1 3 +1340 1 9 10 1 2 4 2 4 2 3 3 1 3 3 1 2 2 1 3 1 2 3 1 2 2 2 2 2 4 3 1 3 4 3 1 2 2 4 2 1 1 1 1 1 1 3 3 4 4 3 3 1 1 3 3 +1340 10 0 0 2 1 4 2 4 2 3 3 1 3 3 1 2 2 1 3 1 2 3 1 2 2 2 2 2 4 3 1 3 4 3 1 2 2 4 2 1 1 1 1 1 1 3 3 4 4 3 3 1 1 3 3 +1340 11 0 0 1 1 4 2 4 2 3 3 1 3 3 1 4 2 1 3 2 2 1 1 2 2 2 2 2 4 3 1 3 4 1 1 2 2 4 2 1 1 1 1 1 1 3 3 2 4 1 3 3 1 1 3 +1340 12 0 0 2 1 2 2 4 2 3 3 1 3 3 1 2 2 1 3 1 2 3 1 4 2 4 2 2 4 3 1 4 4 1 1 4 2 2 2 1 1 1 1 1 1 3 3 2 4 1 3 3 1 1 3 +1340 2 11 12 2 2 2 2 4 2 3 3 1 3 3 1 4 2 1 3 1 2 3 1 2 2 2 2 2 2 3 3 4 4 1 1 2 2 2 2 1 1 1 1 1 1 3 3 2 4 1 3 3 1 1 3 +1340 9 0 0 1 1 4 4 2 2 3 3 1 1 1 1 2 2 3 3 2 2 1 1 2 2 2 2 4 4 1 1 3 3 1 1 2 2 4 4 1 1 1 1 1 1 3 3 4 4 3 3 1 1 3 3 +1341 1 11 12 1 1 2 2 4 2 3 3 1 3 3 1 2 2 1 3 1 2 3 1 4 2 4 2 2 4 3 1 4 4 1 1 0 0 2 2 1 1 1 1 1 1 3 3 2 2 1 1 3 3 1 1 +1341 11 0 0 1 1 2 2 2 2 3 3 1 1 1 1 2 2 3 3 1 1 3 3 2 2 2 2 2 2 3 3 4 4 1 1 4 2 2 2 1 1 1 1 1 1 3 3 2 4 1 3 3 1 1 3 +1341 12 0 0 2 1 4 2 4 2 3 3 1 3 3 1 2 2 1 3 2 2 1 1 4 2 4 2 4 4 1 1 3 4 1 1 4 2 4 2 3 1 1 1 2 1 3 3 2 2 1 1 3 3 1 1 +1341 13 0 0 1 1 4 2 2 2 3 3 1 1 1 1 2 2 3 3 1 2 3 1 2 2 2 2 2 4 3 1 3 4 1 1 2 2 4 2 1 1 1 1 1 1 3 3 4 4 3 3 1 1 3 3 +1341 14 0 0 2 1 4 2 2 2 3 3 1 1 1 1 2 2 3 3 1 2 3 1 2 2 2 2 2 4 3 1 3 4 1 1 2 2 4 2 1 1 1 1 1 1 3 3 4 4 3 3 1 1 3 3 +1341 2 13 14 2 1 4 2 2 2 3 3 1 1 1 1 2 2 3 3 1 2 3 1 2 2 2 2 2 4 3 1 3 4 1 1 2 2 4 2 1 1 1 1 1 1 3 3 4 4 3 3 1 1 3 3 +1344 1 12 13 1 1 2 2 4 4 3 3 3 3 3 3 4 4 1 1 2 2 1 1 2 2 2 2 2 2 3 3 4 4 1 1 2 2 2 2 1 1 1 1 1 1 3 3 2 2 1 1 3 3 1 1 +1344 12 0 0 1 1 2 2 4 2 3 3 1 3 3 1 4 2 1 3 1 2 3 1 2 2 2 2 2 2 3 3 4 4 1 1 2 2 2 2 1 1 1 1 1 1 3 3 2 4 1 3 3 1 1 3 +1344 13 0 0 2 1 2 2 4 2 3 3 1 3 3 1 4 2 1 3 1 2 3 1 2 2 2 2 2 2 3 3 4 4 1 1 2 2 2 2 1 1 1 1 1 1 3 3 2 4 1 3 3 1 1 3 +1345 12 0 0 1 1 4 2 4 2 3 3 3 3 3 1 2 2 1 3 2 2 1 1 4 2 4 2 4 4 1 1 3 4 1 1 4 2 4 2 3 1 1 1 2 1 3 3 2 2 1 1 3 3 1 1 --- /dev/null +++ b/test-data/1.bed.spaces @@ -0,0 +1,65 @@ +chr1 147962192 147962580 CCDS989.1_cds_0_0_chr1_147962193_r 0 - +chr1 147984545 147984630 CCDS990.1_cds_0_0_chr1_147984546_f 0 + +chr1 148078400 148078582 CCDS993.1_cds_0_0_chr1_148078401_r 0 - +chr1 148185136 148185276 CCDS996.1_cds_0_0_chr1_148185137_f 0 + +chr10 55251623 55253124 CCDS7248.1_cds_0_0_chr10_55251624_r 0 - +chr11 116124407 116124501 CCDS8374.1_cds_0_0_chr11_116124408_r 0 - +chr11 116206508 116206563 CCDS8377.1_cds_0_0_chr11_116206509_f 0 + +chr11 116211733 116212337 CCDS8378.1_cds_0_0_chr11_116211734_r 0 - +chr11 1812377 1812407 CCDS7726.1_cds_0_0_chr11_1812378_f 0 + +chr12 38440094 38440321 CCDS8736.1_cds_0_0_chr12_38440095_r 0 - +chr13 112381694 112381953 CCDS9526.1_cds_0_0_chr13_112381695_f 0 + +chr14 98710240 98712285 CCDS9949.1_cds_0_0_chr14_98710241_r 0 - +chr15 41486872 41487060 CCDS10096.1_cds_0_0_chr15_41486873_r 0 - +chr15 41673708 41673857 CCDS10097.1_cds_0_0_chr15_41673709_f 0 + +chr15 41679161 41679250 CCDS10098.1_cds_0_0_chr15_41679162_r 0 - +chr15 41826029 41826196 CCDS10101.1_cds_0_0_chr15_41826030_f 0 + +chr16 142908 143003 CCDS10397.1_cds_0_0_chr16_142909_f 0 + +chr16 179963 180135 CCDS10401.1_cds_0_0_chr16_179964_r 0 - +chr16 244413 244681 CCDS10402.1_cds_0_0_chr16_244414_f 0 + +chr16 259268 259383 CCDS10403.1_cds_0_0_chr16_259269_r 0 - +chr18 23786114 23786321 CCDS11891.1_cds_0_0_chr18_23786115_r 0 - +chr18 59406881 59407046 CCDS11985.1_cds_0_0_chr18_59406882_f 0 + +chr18 59455932 59456337 CCDS11986.1_cds_0_0_chr18_59455933_r 0 - +chr18 59600586 59600754 CCDS11988.1_cds_0_0_chr18_59600587_f 0 + +chr19 59068595 59069564 CCDS12866.1_cds_0_0_chr19_59068596_f 0 + +chr19 59236026 59236146 CCDS12872.1_cds_0_0_chr19_59236027_r 0 - +chr19 59297998 59298008 CCDS12877.1_cds_0_0_chr19_59297999_f 0 + +chr19 59302168 59302288 CCDS12878.1_cds_0_0_chr19_59302169_r 0 - +chr2 118288583 118288668 CCDS2120.1_cds_0_0_chr2_118288584_f 0 + +chr2 118394148 118394202 CCDS2121.1_cds_0_0_chr2_118394149_r 0 - +chr2 220190202 220190242 CCDS2441.1_cds_0_0_chr2_220190203_f 0 + +chr2 220229609 220230869 CCDS2443.1_cds_0_0_chr2_220229610_r 0 - +chr20 33330413 33330423 CCDS13249.1_cds_0_0_chr20_33330414_r 0 - +chr20 33513606 33513792 CCDS13255.1_cds_0_0_chr20_33513607_f 0 + +chr20 33579500 33579527 CCDS13256.1_cds_0_0_chr20_33579501_r 0 - +chr20 33593260 33593348 CCDS13257.1_cds_0_0_chr20_33593261_f 0 + +chr21 32707032 32707192 CCDS13614.1_cds_0_0_chr21_32707033_f 0 + +chr21 32869641 32870022 CCDS13615.1_cds_0_0_chr21_32869642_r 0 - +chr21 33321040 33322012 CCDS13620.1_cds_0_0_chr21_33321041_f 0 + +chr21 33744994 33745040 CCDS13625.1_cds_0_0_chr21_33744995_r 0 - +chr22 30120223 30120265 CCDS13897.1_cds_0_0_chr22_30120224_f 0 + +chr22 30160419 30160661 CCDS13898.1_cds_0_0_chr22_30160420_r 0 - +chr22 30665273 30665360 CCDS13901.1_cds_0_0_chr22_30665274_f 0 + +chr22 30939054 30939266 CCDS13903.1_cds_0_0_chr22_30939055_r 0 - +chr5 131424298 131424460 CCDS4149.1_cds_0_0_chr5_131424299_f 0 + +chr5 131556601 131556672 CCDS4151.1_cds_0_0_chr5_131556602_r 0 - +chr5 131621326 131621419 CCDS4152.1_cds_0_0_chr5_131621327_f 0 + +chr5 131847541 131847666 CCDS4155.1_cds_0_0_chr5_131847542_r 0 - +chr6 108299600 108299744 CCDS5061.1_cds_0_0_chr6_108299601_r 0 - +chr6 108594662 108594687 CCDS5063.1_cds_0_0_chr6_108594663_f 0 + +chr6 108640045 108640151 CCDS5064.1_cds_0_0_chr6_108640046_r 0 - +chr6 108722976 108723115 CCDS5067.1_cds_0_0_chr6_108722977_f 0 + +chr7 113660517 113660685 CCDS5760.1_cds_0_0_chr7_113660518_f 0 + +chr7 116512159 116512389 CCDS5771.1_cds_0_0_chr7_116512160_r 0 - +chr7 116714099 116714152 CCDS5773.1_cds_0_0_chr7_116714100_f 0 + +chr7 116945541 116945787 CCDS5774.1_cds_0_0_chr7_116945542_r 0 - +chr8 118881131 118881317 CCDS6324.1_cds_0_0_chr8_118881132_r 0 - +chr9 128764156 128764189 CCDS6914.1_cds_0_0_chr9_128764157_f 0 + +chr9 128787519 128789136 CCDS6915.1_cds_0_0_chr9_128787520_r 0 - +chr9 128882427 128882523 CCDS6917.1_cds_0_0_chr9_128882428_f 0 + +chr9 128937229 128937445 CCDS6919.1_cds_0_0_chr9_128937230_r 0 - +chrX 122745047 122745924 CCDS14606.1_cds_0_0_chrX_122745048_f 0 + +chrX 152648964 152649196 CCDS14733.1_cds_0_0_chrX_152648965_r 0 - +chrX 152691446 152691471 CCDS14735.1_cds_0_0_chrX_152691447_f 0 + +chrX 152694029 152694263 CCDS14736.1_cds_0_0_chrX_152694030_r 0 - --- a/lib/galaxy/datatypes/data.py +++ b/lib/galaxy/datatypes/data.py @@ -295,7 +295,7 @@ class Data( object ): def after_setting_metadata( self, dataset ): """This function is called on the dataset after metadata is set.""" dataset.clear_associated_files( metadata_safe = True ) - def __new_composite_file( self, name, optional = False, mimetype = None, description = None, substitute_name_with_metadata = None, is_binary = False, space_to_tab = True, **kwds ): + def __new_composite_file( self, name, optional = False, mimetype = None, description = None, substitute_name_with_metadata = None, is_binary = False, space_to_tab = False, **kwds ): kwds[ 'name' ] = name kwds[ 'optional' ] = optional kwds[ 'mimetype' ] = mimetype --- a/test/base/twilltestcase.py +++ b/test/base/twilltestcase.py @@ -143,7 +143,7 @@ class TwillTestCase( unittest.TestCase ) filename = os.path.join( *path ) file(filename, 'wt').write(buffer.getvalue()) - def upload_file( self, filename, ftype='auto', dbkey='unspecified (?)', metadata = None, composite_data = None ): + def upload_file( self, filename, ftype='auto', dbkey='unspecified (?)', space_to_tab = False, metadata = None, composite_data = None ): """Uploads a file""" self.visit_url( "%s/tool_runner?tool_id=upload1" % self.url ) try: @@ -156,9 +156,11 @@ class TwillTestCase( unittest.TestCase ) for i, composite_file in enumerate( composite_data ): filename = self.get_filename( composite_file.get( 'value' ) ) tc.formfile( "1", "files_%i|file_data" % i, filename ) + tc.fv( "1", "files_%i|space_to_tab" % i, composite_file.get( 'space_to_tab', False ) ) else: filename = self.get_filename( filename ) tc.formfile( "1", "file_data", filename ) + tc.fv( "1", "space_to_tab", space_to_tab ) tc.submit("runtool_btn") self.home() except AssertionError, err: @@ -196,60 +198,6 @@ class TwillTestCase( unittest.TestCase ) # Wait for upload processing to finish (TODO: this should be done in each test case instead) self.wait() - def upload_composite_datatype_file( self, ftype, ped_file='', map_file='', bim_file='', bed_file='', - fped_file='',fphe_file='',pphe_file='',fam_file='',pheno_file='',eset_file='',malist_file='', - affybatch_file='', dbkey='unspecified (?)', base_name='rgenetics' ): - """Tests uploading either of 2 different composite data types ( lped and pbed )""" - self.visit_url( "%s/tool_runner/index?tool_id=upload1" % self.url ) - # Handle refresh_on_change - self.refresh_form( "file_type", ftype ) - tc.fv( "1", "dbkey", dbkey ) - tc.fv( "1", "files_metadata|base_name", base_name ) - if ftype == 'lped': - # lped data types include a ped_file and a map_file - ped_file = self.get_filename( ped_file ) - tc.formfile( "1", "files_0|file_data", ped_file ) - map_file = self.get_filename( map_file ) - tc.formfile( "1", "files_1|file_data", map_file ) - elif ftype == 'pbed': - # pbed data types include a bim_file, a bed_file and a fam_file - bim_file = self.get_filename( bim_file ) - tc.formfile( "1", "files_0|file_data", bim_file ) - bed_file = self.get_filename( bed_file ) - tc.formfile( "1", "files_1|file_data", bed_file ) - fam_file = self.get_filename( fam_file ) - tc.formfile( "1", "files_2|file_data", fam_file ) - elif ftype == 'pphe': - # pphe data types include a phe_file - pphe_file = self.get_filename( pphe_file ) - tc.formfile( "1", "files_0|file_data", pphe_file ) - elif ftype == 'fped': - # fped data types include an fped_file only - fped_file = self.get_filename( fped_file ) - tc.formfile( "1", "files_0|file_data", fped_file ) - elif ftype == 'eset': - # eset data types include a eset_file, a pheno_file - eset_file = self.get_filename( eset_file ) - tc.formfile( "1", "files_0|file_data", eset_file ) - pheno_file = self.get_filename( pheno_file ) - tc.formfile( "1", "files_1|file_data", pheno_file ) - elif ftype == 'affybatch': - # affybatch data types include an affybatch_file, and a pheno_file - affybatch_file = self.get_filename( affybatch_file ) - tc.formfile( "1", "files_0|file_data", affybatch_file ) - pheno_file = self.get_filename( pheno_file ) - tc.formfile( "1", "files_1|file_data", pheno_file ) - else: - raise AssertionError, "Unsupported composite data type (%s) received, currently only %s data types are supported."\ - % (ftype,','.join(self.composite_extensions)) - tc.submit( "runtool_btn" ) - self.check_page_for_string( 'The following job has been succesfully added to the queue:' ) - check_str = base_name #'Uploaded Composite Dataset (%s)' % ftype - self.check_page_for_string( check_str ) - # Wait for upload processing to finish (TODO: this should be done in each test case instead) - self.wait() - self.check_history_for_string( check_str ) - # Functions associated with histories def check_history_for_errors( self ): """Raises an exception if there are errors in a history""" --- a/lib/galaxy/tools/parameters/grouping.py +++ b/lib/galaxy/tools/parameters/grouping.py @@ -241,8 +241,8 @@ class UploadDataset( Group ): name = context.get( 'NAME', None ) info = context.get( 'INFO', None ) warnings = [] - space_to_tab = False - if context.get( 'space_to_tab', None ) not in ["None", None]: + space_to_tab = False + if context.get( 'space_to_tab', None ) not in [ "None", None, False ]: space_to_tab = True file_bunch = get_data_file_filename( data_file, override_name = name, override_info = info ) if file_bunch.path and url_paste: @@ -261,7 +261,7 @@ class UploadDataset( Group ): name = context.get( 'NAME', None ) info = context.get( 'INFO', None ) space_to_tab = False - if context.get( 'space_to_tab', None ) not in ["None", None]: + if context.get( 'space_to_tab', None ) not in [ "None", None, False ]: space_to_tab = True warnings = [] file_bunch = get_data_file_filename( data_file, override_name = name, override_info = info ) --- a/tools/data_source/upload.py +++ b/tools/data_source/upload.py @@ -299,7 +299,7 @@ def add_composite_file( dataset, json_fi break elif dataset.composite_file_paths[value.name] is not None: if not value.is_binary: - if value.space_to_tab: + if dataset.composite_file_paths[ value.name ].get( 'space_to_tab', value.space_to_tab ): sniff.convert_newlines_sep2tabs( dataset.composite_file_paths[ value.name ][ 'path' ] ) else: sniff.convert_newlines( dataset.composite_file_paths[ value.name ][ 'path' ] )

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