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September 2012

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Galaxy September 20, 2012 Distribution & News Brief
by Jennifer Jackson 21 Sep '12

21 Sep '12

*Galaxy September 20, 2012 Distribution & News Brief* http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_09_20 <http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_09_20> /*Highlights:* http://wiki.g2.bx.psu.edu/News <http://wiki.g2.bx.psu.edu/News>/ * A /*new Galaxy tool*/<http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_09_20#Galaxy_Tool_Factory> that writes other /*new Galaxy tools*/! The /*Tool Factory*/ is in the Galaxy's Main *Tool Shed* (*/toolfactory/*). Try it now! * Learn how to *display multiple versions of a tool* in the Galaxy tool panel. * *CloudLaunch Overhaul* includes Boto 2.5.2 and simplified instance selection and key generation. * Release also includes more *Tool Shed *updates, *Framework* and *API* updates, plus *Security* and *Bug* fixes. http://getgalaxy.org http://bitbucket.org/galaxy/galaxy-dist <http://bitbucket.org/galaxy/galaxy-dist> *new: * $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist* upgrade:* $ hg pull -u -r da9d740fce31 ** *Thanks for using Galaxy!* Jennifer Jackson & Galaxy Team http://galaxyproject.org

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Galaxy September 7, 2012 Distribution & News Brief
by Jennifer Jackson 07 Sep '12

07 Sep '12

*Galaxy September 7, 2012 Distribution & News Brief* http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_09_07 /*Highlights:*/ * *NCBI BLAST+ has moved* from the Galaxy distribution to the Galaxy's Main Tool Shed. * *Tool Shed* *is now running Mercurial version 2.2.3*. Many updates and refinements including UI/metadata changes - read the full report. * *Streamline local setup* with the *Reference Genome rsync Server*: same builds and indexes as on the public Galaxy Main instance. * More *updates to* *Output and Error Handling* including updated documentation and enhancements to exit code checks. * *TopHat2 / Bowtie2* latest support includes Tophat2 fusions output, Bowtie2 sorted BAMs, and a new RNA-seq Tutorial. * *Trackster* updates include improved *support for* *bigWig / bigBed*, new support for *bedGraph*, and a new *search feature for GFF / GTF / BED* datasets. * Plus many *other* *Workflow, API, Source, UI* *features* and a summary of *recent Galaxy Update* highlights. http://getgalaxy.org http://bitbucket.org/galaxy/galaxy-dist *new: * $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist *upgrade:* $ hg pull -u -r e6444e7a1685 * * *Thanks for using Galaxy!* Jennifer Jackson & Galaxy Team -- http://galaxyproject.org http://usegalaxy.org

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