galaxy-announce

galaxy-announce@lists.galaxyproject.org

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GCC2022 Deadlines Extended to June 22 and June 30!
by Dave Clements 18 Jun '22

18 Jun '22

Hello all, *The executive summary:* 1. *We have moved our registration deadline to June 22*. Register by the end of Wednesday and save 25% or $200 on your registration. 2. *Hotel rooms can now be booked through June 30*. The hotel is where the conference is, it's a good price, it's in a cool neighborhood, and it's right next to the UMN campus. And if you are wondering what GCC2022 is about... *GCC2022* <https://galaxyproject.org/gcc2022/> brings together hundreds of researchers, trainers, tool developers, software engineers, and computational infrastructure providers, all addressing common challenges in data intensive science using the Galaxy data integration and analysis platform <https://galaxyproject.org/>. *See below for links and more news.* I/We hope to see you in Minneapolis in one month! Dave C, on behalf of the GCC2022 Organizing Committee *2022 Galaxy Community Conference (GCC2022)* July 17-23, 2022 University of Minnesota, Twin Cities Minneapolis, Minnesota, United States *#UseGalaxy2022 <https://twitter.com/hashtag/UseGalaxy2022>* *Three years of waiting and we're down to one month before the #usegalaxy <https://twitter.com/hashtag/usegalaxy?src=hashtag_click> community meets in person at GCC2022! View a summary here <https://galaxyproject.org/blog/2022-06-guide-to-gcc2022/> of what to expect when you join us in Minneapolis.* *Not Registered Yet? There's Still Time!* *Registration has been EXTENDED to Wednesday, June 22 *- *register here for GCC2022 <https://galaxyproject.org/events/gcc2022/register>! * Meeting Registration Fees *Full (< June 22) * *Late (> June 23) * Student/postdoc $400 $500 Academic / Non-Profit / Government $550 $750 Industry $900 $1,150 *Michael Schatz at GCC2022* What do TIME100 <https://time.com/collection/100-most-influential-people-2022/6177818/evan-e…> and GCC2022 have in common? Michael Schatz, that's what! Come talk to him about the future, learn more about his Birds of a Feather session here <https://gcc2022.sched.com/event/13V9n>. *We have a tremendous lineup of speakers for our accepted and invited talks and training sessions! *Get to know who they are by *viewing the entire GCC2022 schedule <https://gcc2022.sched.com/>. * *Hotel Reservation Deadline EXTENDED* Be sure to make your hotel reservations <https://www.marriott.com/event-reservations/reservation-link.mi?id=16458128…> at our GCC2022 venue the Courtyard Minneapolis Downtown by Thursday, June 30 to get our conference rate of $139/night! Register for GCC2022 by June 22 <https://galaxyproject.org/events/gcc2022/register> Make Hotel Reservations by June 30 <https://www.marriott.com/event-reservations/reservation-link.mi?id=16458128…> PS: No, you can never completely leave the Galaxy. You knew this right? PPS: We moved these dates back because a particularly bad interaction between the (spiffy!) MailChimp service we have been using for GCC2022, and Galaxy's (only semi-functional!) MailMan3 server caused no email to be delivered to several mailing lists since the end of April. So, now is your chance. Please do register by Wednesday. -- My last day with Galaxy was December 17, 2021 . After that I will be the Anaconda <https://www.anaconda.com/> open source community manager. If you need to reach Galaxy Outreach after December 17, please send your email to outreach(a)galaxyproject.org.

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自动回复: galaxy-announce Digest, Vol 105, Issue 3
by 2496867710 29 Apr '22

29 Apr '22

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We're Back In-Person for GCC2022!
by Miki Tufto 29 Apr '22

29 Apr '22

Join us July 17-23 in Minneapolis ** 2022 Galaxy Community Conference (GCC2022) July 17-23, 2022 University of Minnesota, Twin Cities Minneapolis, Minnesota, United States #UseGalaxy2022 (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) ------------------------------------------------------------ ** We look forward to welcoming you to Minneapolis this summer for the 2022 Galaxy Community Conference (GCC2022). This year will feature separate Training Day, Meeting, and CoFest events (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) , which can be registered for separately or all at once. Steep discounts are offered to students and postdocs, and for registering early. Registration Registration for GCC2022 is open (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) ! See below for event details and description of all registration options. The registration is processed by the University of Minneapolis. Training Day, July 8 This pre-conference event is virtual, asynchronous, global, and free. The GCC2022 Training Day will focus on introductory topics, many of which are prerequisites for training that is being offered in-person, during the meeting. We recommend you look at the training opportunities for Training Day, and during the conference when deciding if you should register for training day. Cost: Free, based on space availability Meeting, July 17-20 This is it! Our first in-person GCC since 2019. The four day meeting will feature accepted and invited talks, poster, demo, and sponsor sessions, training sessions, Birds-of-a-Feather (BoF) sessions, a conference dinner, and lots of time for networking. Meeting registration includes admission to conference talks, poster/demo sessions, and all training during the conference. We strongly recommend that you decide on which training you want to take before you start your meeting registration process. ------------------------------------------------------------ Meeting Registration Fees Early (< May 12) Full (< June 24) Late (> June 24) Student/postdoc $250 $400 $500 Academic / Non-Profit / Government $400 $550 $750 Industry $700 $900 $1,150 CoFest, July 21-23 You can register for 1, 2, or 3 days of CoFest (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) . The registration cost is used to cover the costs of food and drinks during the event. Cost: $9 per day Register for GCC2022 Today! (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) GCC2022 Venue and Housing GCC2022 will be held at Courtyard by Marriott Minneapolis Downtown (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) at 1500 S Washington Ave, Minneapolis, MN 55454 (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) on the U of M campus. CoFest will be held on the U of M campus. More details to come on website (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) . Housing is available at the Courtyard by Marriott Minneapolis Downtown, in University of Minnesota campus dorms, and other city hotels. Learn more about these options here (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) . ============================================================ ** Twitter (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) ** Website (https://sapphyregroup.us14.list-manage.com/track/click?u=0f49f912c8c0f3f17b…) Copyright © 2022 The Sapphyre Group, All rights reserved. You are receiving this email because you opted in via our website. Our mailing address is: The Sapphyre Group 7042 E Fish Lake Rd Maple Grove, MN 55311-2832 USA Want to change how you receive these emails? You can ** update your preferences (https://sapphyregroup.us14.list-manage.com/profile?u=0f49f912c8c0f3f17b049d…) or ** unsubscribe from this list (https://sapphyregroup.us14.list-manage.com/unsubscribe?u=0f49f912c8c0f3f17b…) . Email Marketing Powered by Mailchimp http://www.mailchimp.com/email-referral/?utm_source=freemium_newsletter&utm…

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自动回复: galaxy-announce Digest, Vol 105, Issue 2
by 2496867710 29 Mar '22

29 Mar '22

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MiniGateways 2022 Conference, April 5-7 - It’s FREE
by Beatriz Serrano-Solano 29 Mar '22

29 Mar '22

*Registration for MiniGateways 2022 is FREE but required. **Register now!* <http://ec2-54-202-43-228.us-west-2.compute.amazonaws.com/x/d?c=20511062&l=4…> *MiniGateways 2022* /April 5-7, 2022/ Connections for the Future Registration <http://ec2-54-202-43-228.us-west-2.compute.amazonaws.com/x/d?c=20511062&l=4…>for MiniGateways 2022 is NOW OPEN! Save your spot and sign up for tutorials! Last December we announced MiniGateways 2022 with a “Save the Date” message. The *schedule and presenters* <http://ec2-54-202-43-228.us-west-2.compute.amazonaws.com/x/d?c=20511062&l=3…>are now finalized. The virtual conference is open for *registration: **https://sciencegateways.org/minigateways2022-registration* <https://urldefense.proofpoint.com/v2/url?u=https-3A__sciencegateways.org_mi…> Register before April 1 to receive a surprise in the mail! *MiniGateways 2022* <http://ec2-54-202-43-228.us-west-2.compute.amazonaws.com/x/d?c=20511062&l=3…>**will offer a variety of presentations, tutorials, options for interaction, and opportunities to build connections for the future with the community around science gateways. /What you’ll get from our program:/ * Join us on Tuesday and Wednesday for exciting Tutorial sessions where you can *gain in-depth expertise on specific topics* * Join us on Wednesday and Thursday for exciting *short talks on topics contributed by the community * * Join our interactive Open Forum on Thursday *for discussing emerging topics for science gateways* * Opportunities to *grow your network* by meeting people in the community who are users, developers, or providers of gateways

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自动回复: galaxy-announce Digest, Vol 105, Issue 1
by 2496867710 22 Mar '22

22 Mar '22

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Announcing BOSC 2022, the 23rd Bioinformatics Open Source Conference
by Bérénice Batut 22 Mar '22

22 Mar '22

BOSC 2022 dates: July 13-14, as part of ISMB 2022 Location: Madison, WI, USA, and virtual Website: <https://www.open-bio.org/wiki/BOSC_2019> https://www.open-bio.org/events/bosc/ BOSC announcements mailing list: <http://lists.open-bio.org/mailman/listinfo/bosc-announce> https://groups.google.com/forum/#!forum/bosc-announce Slack channel: https://join.slack.com/t/obf-bosc/shared_invite/zt-n5ur1gsj-z2C~69_4lYTFPg5… Twitter: @OBF_BOSC <https://twitter.com/OBF_BOSC>, #BOSC2022 Key Dates - April 21, 2022: Deadline for submitting talk/poster abstracts <https://www.open-bio.org/events/bosc-2022/submit/> - May 12: Talk/poster acceptance notifications - May 19: Late poster (and Late-Breaking Lightning Talk) submission deadline - May 26: Late poster / LBLT acceptance notifications - July 13-14: BOSC 2022 <https://www.open-bio.org/events/bosc-2022/> - July 15-16: CollaborationFest (CoFest) About BOSC The Bioinformatics Open Source Conference promotes and facilitates the open source development of bioinformatics tools and open science. Since 2000, BOSC has provided a forum for developers and users to interact and share research results and ideas in open source bioinformatics and open science. BOSC’s broad spectrum of topics includes practical techniques for solving bioinformatics problems; software development practices; standards and ontologies; approaches that promote open science and sharing of data, results and software; and ways to grow open source communities while promoting diversity within them. As usual, BOSC will include keynote talks, longer and shorter (lightning) talks from submitted abstracts, posters, Birds of a Feather, and more! New this year: Joint session with Bio-Ontologies <https://www.open-bio.org/2022/03/03/bosc-and-bio-ontologies-joint-session/> ! We are excited to announce that BOSC and Bio-Ontologies <https://www.bio-ontologies.org.uk/ismb-annual-meeting> will join forces for part of a day at ISMB 2022. The joint session will feature keynote speaker Melissa Haendel as well as talks chosen from abstracts submitted to BOSC or Bio-Ontologies. Keynote Speakers <https://open-bio.org/events/bosc-2022/bosc-2022-keynotes> Melissa Haendel is the Chief Research Informatics Officer at University of Colorado Anschutz Medical Campus, and Director of the Center for Data to Health (CD2H). With expertise in molecular genetics and developmental biology as well as translational informatics, Dr. Haendel focuses on open science and data integration to improve rare-disease diagnosis and mechanism discovery. She is a leader in ontologies and standards for data sharing. Lior Pachter is the Bren professor of computational biology at Caltech. He is a Fellow of the International Society of Computational Biology <https://www.iscb.org/iscb-fellows> and has been awarded a National Science Foundation CAREER award, a Sloan Research Fellowship His research interests span the mathematical and biological sciences, including algorithms, combinatorics, comparative genomics, algebraic statistics, molecular biology and evolution. Dr. Pachter is known as a vociferous advocate of open and accountable science. A third keynote speaker will be announced soon! Abstract submission We encourage you to submit abstracts <https://www.open-bio.org/events/bosc-2022/submit/> (due April 21 – sorry, no extensions) on any topic relevant to open source bioinformatics or open science. After review, some abstracts will be selected for lightning talks, longer talks, or posters. Abstracts that are not chosen for talks will automatically be considered for posters. Abstract submission will be via ISMB’s EasyChair. Note that ISMB/ECCB requires a short (200-word) text-only abstract for all submissions (talk or poster), plus a “long abstract” (PDF, 2 pages max) if you want to be considered for a talk. A second, later round of submissions will end May 19. Abstracts submitted in the late round will be considered only for posters and a limited number of “late-breaking lightning talk” slots; they are not eligible for longer talks. Registration fee assistance We realize that the cost of ISMB may be prohibitive for some. If you are submitting an abstract to BOSC and would have difficulty covering the cost of registration, you can request a registration fee waiver right on the abstract submission form (which will not be seen by reviewers). Those who are not submitting abstracts can apply for an OBF Event Fellowship <https://www.open-bio.org/event-awards/> (deadline April 1, 2022). BOSC topics include (but are not limited to): - Ontologies: Open Source Tools and Approaches (new this year – joint session with Bio-Ontologies COSI <http://www.bio-ontologies.org.uk/>) - Open Science and Reproducible Research - Open Biomedical Data - Citizen/Participatory Science - Standards and Interoperability - Data Science - Workflows - Open Approaches to Translational Bioinformatics - Open Science for Global Health - Developer Tools and Libraries - Inclusion, Outreach and Training - Bioinformatics Open Source Project Reports (about new or existing projects) - Open and interoperable ontologies (joint session with Bio-Ontologies <https://www.open-bio.org/2022/03/03/bosc-and-bio-ontologies-joint-session/> ) We look forward to reading your abstract and seeing you (in person or virtually) at BOSC 2022! Sincerely, BOSC 2022 Organizing Committee: Nomi Harris, Karsten Hokamp, Hervé Ménager, Monica Munoz-Torres, Deepak Unni, Nicole Vasilevsky, Jason Williams

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Release of Galaxy 22.01
by Marius van den Beek 16 Mar '22

16 Mar '22

Dear Community, The Galaxy Committers team is pleased to announce the release of Galaxy 22.01. - Developer and admin release announcement <https://docs.galaxyproject.org/en/master/releases/22.01_announce.html>. - User release announcement <https://docs.galaxyproject.org/en/master/releases/22.01_announce_user.html> . A few release highlights are: New Colour Selector Do you use tools which require colour inputs, like Circos? Previously, we had a very restricted colour input which gave you a very limited palette. Now, you have complete freedom of choice with the modern colour selector. Improved File Export If you've been exporting files from Galaxy lately, you've probably seen the amazing new remote file source export, which allows you to export files to FTP, Dropbox, and other locations. Improved File Uploads Previously, Galaxy servers used a variety of methods to let you upload large files easily, including some servers which required FTP for large files. We have replaced this with a new upload method, which will be enabled on all usegalaxy servers soon. This will make file uploads significantly smoother, and will be more tolerant of network failures and interruptions! You do not need to make any changes. Beta History: Collection Improvements If you've been trying out the beta history (which will be the default history in the next release!), it has been updated to indicate whether collections are homogeneous or heterogeneous. This will help you see more easily if you've accidentally included an incorrect dataset. Galaxy starts as a FastAPI application by default Starting Galaxy via run.sh will use the new gravity process manager <https://github.com/galaxyproject/gravity>. The new configuration uses Gunicorn <https://gunicorn.org/> and FastAPI <https://fastapi.tiangolo.com/> to drive Galaxy's web process, and starts job handler and Celery <https://docs.celeryproject.org/> processes automatically. For more details and instructions, please consult the Migrating to Gunicorn documentation <https://docs.galaxyproject.org/en/latest/admin/migrating_to_gunicorn>. User Preferences can be encrypted in Galaxy Vault Galaxy can now be configured to store secrets in an external vault, which is useful for secure handling and centralization of secrets management. In particular, information fields in the "Manage information" section of the user profile, such as dropbox keys, can be configured to be encrypted at rest in a vault (Hashicorp, Custos or database) instead of being stored as plain text in the user preferences table. For detailed information on configuration, refer to the vault section <https://docs.galaxyproject.org/en/release_22.01/admin/special_topics/vault.…> of the admin documentation. Release Notes Please see the full release notes <https://docs.galaxyproject.org/en/latest/releases/22.01_announce.html> for a lot more details and instructions for upgrading your Galaxy installation. Thanks for using Galaxy!

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2022 Galaxy Community Conference (GCC2022), July 17-23, Minneapolis, Minnesota, USA
by Pratik Jagtap 28 Feb '22

28 Feb '22

2022 Galaxy Community Conference (GCC2022) July 17-23, Minneapolis, Minnesota, USA https://galaxyproject.org/events/gcc2022/ Deadlines: April 12: Oral presentation and lightning talk abstracts due <https://docs.google.com/forms/d/1z29z8Nd8Gho0trS7DySvWAii6hisbZr67cuI--lcZ_…> May 12: Early registration <https://learning.umn.edu/portal/events/reg/participantTypeSelection.do?meth…> ends June 3: Demo and poster abstracts due <https://docs.google.com/forms/d/1z29z8Nd8Gho0trS7DySvWAii6hisbZr67cuI--lcZ_…> The 2022 Galaxy Community Conference (GCC2022) <https://galaxyproject.org/events/gcc2022/> will be held July 17-23 in Minneapolis, Minnesota. GCC brings together hundreds of faculty, clinicians, researchers, and students, all working in and supporting data intensive science that is accessible, shareable, and reproducible. GCC2022 features oral presentations, lightning talks, posters, demos, birds-of-a-feather gatherings (BoFs), training, a CollaborationFest, and plenty of opportunities for networking. Presentations will cover the full spectrum of Galaxy applications, enhancements, and deployments. If you are working in data intensive science then GCC2022 is an ideal conference for sharing your work, learning from others, and finding new collaborators. Present your work! Abstract submission <https://docs.google.com/forms/d/1z29z8Nd8Gho0trS7DySvWAii6hisbZr67cuI--lcZ_…> for talks, lightning talks, demos, and posters is now open. If you work in data-intensive science then please consider presenting your work at GCC2022. This is a chance to present to 200+ researchers, all addressing challenges in data intensive science. Abstract submissions for oral presentations are due on April 12. Submit an abstract (or two) now! <https://docs.google.com/forms/d/1z29z8Nd8Gho0trS7DySvWAii6hisbZr67cuI--lcZ_…> Topics of Interest If you’re currently working on any of these topics, this conference is for you: - Omics data analysis: genomic sequencing, microbiome, proteomics, imaging, you name it! - Tools and visualizations for working with omics data - Compute infrastructure for enabling data intensive science - Galaxy applications in any domain or topic: ML, climate, NPL, … - Outreach and training related to data analysis Registration Registration information is available on the conference website <https://galaxyproject.org/events/gcc2022/register#in-person>. Early registration ends May 12. So, register <https://galaxyproject.org/events/gcc2022/register> early! About Galaxy Galaxy <https://galaxyproject.org/> is a platform for data integration and analysis in the life sciences. It enables researchers to build, run, share, and repeat their own complex computational analyses using only a web browser and without having to first learn system administration and command line interfaces. The Galaxy Project is driven by a vibrant community who publish workflows and analyses, wrap new tools, maintain and enhance the source code, provide support, and write documentation and training materials. Galaxy is open-source and freely available, and is deployed in hundreds of organizations, running on everything from laptops to supercomputers to public and private clouds. Over 150 of these platforms are publicly available and can be used with little or no setup. Thousands of tools have been ported to Galaxy and are deployable from the Galaxy Tool Shed. Galaxy was developed to support life science research, but the platform is domain agnostic and is now used in domains as diverse as natural language processing, computational solid geometry, and social science. Hope to see you in Minneapolis! *Organizers of the Galaxy Community Conference (GCC2022)* https://galaxyproject.org/events/gcc2022/

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10 years of the Galactic News: we need your help
by Beatriz Serrano-Solano 10 Jan '22

10 Jan '22

Dear all, Happy new year! For 10 years, we have been sharing news through the monthly Galactic News. This is a milestone and we are so proud of the community that we built together. A lot can change over 10 years and we want to know which parts of the Galaxy newsletter are the most useful and which parts may need to be modified to suit your needs. Please take *2 minutes to fill out **this survey <https://docs.google.com/forms/d/e/1FAIpQLSdws7R3y_4qB4LNNbqx4qYRNlkmuwmnqQ5…>* so that we can create a newsletter that will better serve our growing community. Thank you for reading and here's to the next 10 years, Assunta and Bea

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