- galaxy-announce - lists.galaxyproject.org

Release of Galaxy 19.09
by John Chilton 22 Nov '19

22 Nov '19

Dear Community, The Galaxy Committers team is pleased to announce the release of Galaxy 19.09. The release announcement for developers and admins can be found at https://docs.galaxyproject.org/en/master/releases/19.09_announce.html and user facing release notes are at https://docs.galaxyproject.org/en/master/releases/19.09_announce_user.html. A few release highlights are: Interactive Tools ---------------------- A new type of Galaxy tool has been implemented that allows interactive experiences like Galaxy Interactive Environments (via a proxy and Docker containers) but using plugins defined with Galaxy’s XML tool syntax. Workflow Invocation Reports --------------------------- Workflows may now define Markdown templates with Galaxy-specific embedded syntax extensions that can tie together workflow inputs, outputs, jobs, and metadata into rich reports. New Toolshed Client Interface ----------------------------- This project drove numerous enhancements to the Tool Shed API, including vastly improved search functionality. This interface has been completely re-imagined and feels much more interactive. Check out the release notes for a lot more details - there are many more enhancements such as new interface elements, visualizations, datatypes, and more. There are also important notes for Galaxy deployers - such as information about configuration changes in this release and the formal deprecation of Python 2.7 support (this will be the last release with formal support of Python 2). Thanks for using Galaxy!

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November Galaxy News
by Dave Clements 12 Nov '19

12 Nov '19

Hello all, The November 2019 Galactic News includes Galactic news under this or any other sun: * 19 Upcoming Events * 208 new publications * 2 new blog posts * Galaxy Platform News * Training material and doc updates * Openings with 5 organizations * Releases * Other news See https://galaxyproject.org/news/2019-11-galaxy-update/ for details. Thanks, Dave C -- https://galaxyproject.org/

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October Galaxy News: Events, pubs, platforms, jobs, training, and more
by Dave Clements 02 Oct '19

02 Oct '19

Hello all, The October 2019 Galactic News is out! https://galaxyproject.org/news/2019-10-galaxy-update/ There is, as always, a lot going on: - 20 Upcoming Events - 143 new publications - Galaxy Platform News - 6 Openings - Training material and doc updates - Other news too Check it out, Dave C and the Galaxy Community -- https://galaxyproject.org/

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September Galaxy News: INCOB, Galaxy Africa, ACM BCB, GTN, QFAB, ...
by Dave Clements 29 Aug '19

29 Aug '19

Hello all, The September 2019 Galactic news has been published: There are a bunch of upcoming events, including Galaxy @ INCOB, Galaxy Africa, two Bioconda / ToolShed events, a GTN CoFest, QFAB training, a Galaxy Netherlands gathering, (plus more than 20 more). We are also highlighting the new Climate Science Workbench Galaxy server, three recent blog posts, six doc & training updates, and 6 (or 11, depending on how you count) open positions. Find information on all this and more on the Galaxy Community Hub: https://galaxyproject.org/news/2019-09-galaxy-update/ And it's all in a spiffy new format. Hope to see you in Jakarta, Niagara Falls, Ghana, Brisbane, Utrecht, Sri Lanka, Ireland, online, ... Dave C and the Galaxy Community -- https://galaxyproject.org/

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August 2019 Galactic News: GCC2019 is done; BCC2020 is coming
by Dave Clements 01 Aug '19

01 Aug '19

Hello all, The August 2019 Galactic News is here! https://galaxyproject.org/news/2019-08-galaxy-update/ * Events: * GCC2019 is done (and yow, it was a success) * BCC2020 is coming to Toronto! * Galaxy ♥ BioHackathon Europe! * Plus deadlines this month and 19 other events in the next 90 days. * 178 new publications, including 5 highlighted ones. * Two new Galactic Blog posts: * Getting the most out of 1) Galaxy on Twitter, and 2) Pan-Galactic Search * Galaxy Platform News from UseGalaxy.* and the Human Cell Atlas. * Seven Open positions in four countries on two continents. * Updates to training materials and documentation. * New releases. This month's newsletter was a community effort unlike any before it. Thanks to everyone who contributed (and keep those contributions coming!). See you in San Diego, Milwaukee, Honolulu, Toronto, ... Dave C -- https://galaxyproject.org/

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July Galaxy News: GCC2019 is next week
by Dave Clements 28 Jun '19

28 Jun '19

The July 2019 Galactic News is out! https://galaxyproject.org/news/2019-07-galaxy-update/ * GCC2019! * Plus 17 other upcoming events in the next 90 days * 153 new publications, great resources lead to great insight. * Galaxy Platform News for Galaxy Europe, Galaxy Australia, and OpenMinTeD * At least 6 Open positions in five countries on two continents. * Updates to training materials and documentation. * New tools and new releases. * And some other news too. Hope to see you in Freiburg next week, Dave C. Mo, and the Galaxy Community -- https://galaxyproject.org/gcc2019/ https://galaxyproject.org/ https://usegalaxy.org/

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June 2019 Galactic News: GCC Deadlines this week and next
by Dave Clements 03 Jun '19

03 Jun '19

Hello all, The June 2019 Galactic News is here! This is a summary of what is going on in the Galaxy community: https://galaxyproject.org/news/2019-06-galaxy-update/ - GCC2019: - **Advance registration ends 7 June** - **Poster and Demo Abstract Submission deadline: 10 June** - Conference schedule is online - Plus 13 other upcoming events in the next 90 days - 150 new publications, great resources lead to great insight. - Galaxy Platform News: New platforms for tranSMART, antibiotic resistance, phylogeny, long-read data, mass spectrometry Imaging, and Rice! - A new entry to The Galactic Blog on Galaxy cloud bursting - At least 8 Open positions in five countries on two continents. - Updates to training materials and documentation. - New tools and new releases. - And some cool other news too: - The new Galaxy Services Status Web Site - Black Duck Open Hub updates it's Galaxy project stats and we are doing great. See you in a month, Dave C, Mo, and the Galaxy Community -- https://galaxyproject.org/gcc2019/ https://galaxyproject.org/ https://usegalaxy.org/

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GCC2019 Early Reg ends this Friday
by Dave Clements 15 May '19

15 May '19

Hi All, The latest GCC2019 news: - A (final) reminder that early registration for the 2019 Galaxy Community Conference ENDS THIS FRIDAY NIGHT, 17 May, at midnight Freiburg time (CEST / GMT +2). After that registration goes up by ~ 60%. So, register this week! https://galaxyproject.org/events/gcc2019/registration/ - All accepted speakers have been notified and talks are being added to the schedule as presenters confirm. There were far more talk submissions this year than in any previous year and that is reflected in the breadth and quality of the accepted talks. https://gcc2019.sched.com/ - Poster and demo submission is still open! However, space *will* fill up and when it's gone, it's gone. Got something to present? Submit it *soon*. https://galaxyproject.org/events/gcc2019/abstracts/ We hope to see you in Freiburg! Dave C on behalf of the GCC2019 Organizers ------------------ 2019 Galaxy Community Conference (GCC2019) 1-8 July, Freiburg, Germany https://galaxyproject.org/gcc2019 ------------------ The 2019 Galaxy Community Conference (GCC2019) will be held 1-8 July in Freiburg, Germany. GCC brings together hundreds of faculty, clinicians, researchers, and students, all working in and supporting data intensive science that is accessible, sharable and reproducible. GCC2019 features oral presentations, lightning talks, posters, demos, birds-of-a-feather gatherings (BoFs), training, a CollaborationFest, and plenty of opportunities for networking. Presentations will cover the full spectrum of Galaxy applications, enhancements and deployments. If you are working in data intensive science then GCC2019 is an ideal conference for sharing your work, learning from others, and finding new collaborators. Registration Early registration starts at €49/day for students and postdocs, and €79 / day for other academics and non-profit researchers. Childcare is available and travel fellowships are available as well. Early registration ends 17 May, when rates go up by 60%. So, register early. About Galaxy Galaxy (https://galaxyproject.org/) is a platform for data integration and analysis in the life sciences. It enables researchers to build, run, share, and repeat their own complex computational analyses using only a web browser and without having to first learn system administration and command line interfaces. The Galaxy Project is driven by a vibrant community who publish workflows and analyses, wrap new tools, maintain and enhance the source code, provide support, and write documentation and training materials. Galaxy is open-source and freely available, and is deployed in hundreds of organizations, running on everything from laptops through supercomputers to public and private clouds. Over 150 of these platforms are publicly available and can be used with little or no setup. Thousands of tools have been ported to Galaxy ("wrapped") and are deployable from the Galaxy Tool Shed. Galaxy was developed to support life science research, but the software is domain agnostic and is now used in domains as diverse as natural language processing, constructive solid geometry, and social science. -- https://galaxyproject.org/gcc2019/ https://galaxyproject.org/ https://usegalaxy.org/

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May Galaxy News: GCC2019 early reg, GTN CoFest, new pubs, platforms, jobs,...
by Dave Clements 06 May '19

06 May '19

Hello all, The May 2019 Galactic News is here! See https://galaxyproject.org/news/2019-05-galaxy-update/ for details - Events - GCC2019: - **Early registration ends 17 May** - Poster and Demo Abstract Submission is open - Travel Fellowships: 2nd round ends this Friday - GigaScience returns as a GCC sponsor! - GTN CoFest and Community Call: 16 May - Plus 17 other upcoming events in the next 90 days - 265 new publications, great resources lead to great insight. - Some most excellent Galaxy Platform News, including a single cell 'omics workbench, network analysis, subcellular spatial organization modeling, and more! - A new entry to The Galactic Blog, Galaxy hearts GCP. - At least 11 Open positions in six countries on two continents. - Updates to training materials. - New releases. See you in two months in Freiburg, Dave C, Mo, and the Galaxy Community -- https://galaxyproject.org/gcc2019/ https://galaxyproject.org/ https://usegalaxy.org/

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GCC2019 Talk Abstracts due Monday, 22, April
by Dave Clements 17 Apr '19

17 Apr '19

Hello All, This is just a reminder that oral presentation and lightning talk submissions for the 2019 Galaxy Community Conference are due on Monday, 22 April. And, in case you missed these items: - There will be childcare - Travel fellowships are available (application review starts 23 April) Finally, please redistribute this in any of your communities where it's relevant. Thanks, Dave C ------------------ 2019 Galaxy Community Conference (GCC2019) 1-8 July, Freiburg, Germany https://galaxyproject.org/gcc2019 ------------------ Deadlines 22 April: Oral Presentation and Lightning Talk abstracts due 17 May: Early registration ends The 2019 Galaxy Community Conference (GCC2019) will be held 1-8 July in Freiburg, Germany. GCC brings together hundreds of faculty, clinicians, researchers, and students, all working in and supporting data intensive science that is accessible, sharable and reproducible. GCC2019 features oral presentations, lightning talks, posters, demos, birds-of-a-feather gatherings (BoFs), training, a CollaborationFest, and plenty of opportunities for networking. Presentations will cover the full spectrum of Galaxy applications, enhancements and deployments. If you are working in data intensive science then GCC2019 is an ideal conference for sharing your work, learning from others, and finding new collaborators. Present your work! Abstract submission for talks, lightning talks, demos and posters is now open. If you work in data-intensive science then please consider presenting your work at GCC2019. This is a chance to present to 200+ researchers, all addressing challenges in data intensive science. Review of oral presentations starts on 22 April. Submit an abstract (or two) now! Registration Early registration starts at €49/day for students and postdocs, and €79 / day for other academics and non-profit researchers. Childcare is available and travel fellowships are available as well. Early registration ends 17 May, when rates go up by 60%. So, register early. About Galaxy Galaxy (https://galaxyproject.org/) is a platform for data integration and analysis in the life sciences. It enables researchers to build, run, share, and repeat their own complex computational analyses using only a web browser and without having to first learn system administration and command line interfaces. The Galaxy Project is driven by a vibrant community who publish workflows and analyses, wrap new tools, maintain and enhance the source code, provide support, and write documentation and training materials. Galaxy is open-source and freely available, and is deployed in hundreds of organizations, running on everything from laptops through supercomputers to public and private clouds. Over 150 of these platforms are publicly available and can be used with little or no setup. Thousands of tools have been ported to Galaxy ("wrapped") and are deployable from the Galaxy Tool Shed. Galaxy was developed to support life science research, but the software is domain agnostic and is now used in domains as diverse as natural language processing, constructive solid geometry, and social science. We hope to see you in Freiburg! GCC2019 Organizers -- https://galaxyproject.org/gcc2019/ https://galaxyproject.org/ https://usegalaxy.org/

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