Hello,
If you simply use the Galaxy Main or Test sites hosted at PSU, you can safely ignore this message. It pertains to people who've checked out their own copy of Galaxy for development or local use.
Galaxy development has recently moved source control systems, from Subversion to Mercurial. This means that anyone using a local copy of Galaxy will need to make some changes to be able to download future updates.
The preferred method of obtaining Galaxy source is through Mercurial directly (the 'hg' command):
hg clone http://www.bx.psu.edu/hg/galaxy galaxy_dist
Tarballs are also available via the zip/gz/bz2 links here:
And the repository is mirrored in Subversion here:
svn co http://www.bx.psu.edu/svn/galaxy galaxy_dist
Unfortunately, modifications to local copies of Galaxy will need to be transferred from your old checkout to the new checkout.
Please let us know via galaxy-bugs@bx.psu.edu of any issues. Thanks, and thank you for using Galaxy.
--nate
Hello,
Nate Coraor wrote:
Please let us know via galaxy-bugs@bx.psu.edu of any issues. Thanks, and thank you for using Galaxy.
What would be the recommended way of upgrading an existing local Galaxy copy to the latest version, without losing data ?
My local copy is at SVN revision r2760 (just before the major DB changes that r2764 requires).
Can I just perform "hg clone" in the existing Galaxy directory (after applying the DB changes of r2764) ?
Or should I stick to svn with the new SVN repository ? (but will it pick up from my current revision) ?
Thanks, Gordon.
How can I obtain the code base for the latest beta?
Thanks, Paul
On Thu, Jul 17, 2008 at 10:25 AM, Assaf Gordon gordon@cshl.edu wrote:
Hello,
Nate Coraor wrote:
Please let us know via galaxy-bugs@bx.psu.edu of any issues. Thanks, and thank you for using Galaxy.
What would be the recommended way of upgrading an existing local Galaxy copy to the latest version, without losing data ?
My local copy is at SVN revision r2760 (just before the major DB changes that r2764 requires).
Can I just perform "hg clone" in the existing Galaxy directory (after applying the DB changes of r2764) ?
Or should I stick to svn with the new SVN repository ? (but will it pick up from my current revision) ?
Thanks, Gordon.
galaxy-user mailing list galaxy-user@bx.psu.edu http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user
Paul Rigor (uci-ics) wrote:
How can I obtain the code base for the latest beta?
Hi Paul,
The latest code is available via hg, svn, and tarball:
http://g2.trac.bx.psu.edu/wiki/HowToInstall
--nate
galaxy-user@lists.galaxyproject.org