Fetch sequence and alignments: extract blastz alignments
by Erika
Is it possible to get hg18 alignments to panTro2 on the server?
the latest are at :
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/vsPanTro2/
please do NOT use the ones currently in
/depot/data1/cache/human/hg18/align/panTro2/axtNet/
as they were run using an incorrect substitution matrix.
Thanks a lot!
- Erika
**********************************************************
E.M. Kvikstad
Academic Computing Fellow
IGDP Genetics
Center for Comparative Genomics and Bioinformatics
The Pennsylvania State University
208 Mueller Lab
University Park, PA 16802
(814) 863-2185
kvik(a)bx.psu.edu
14 years
- 1
- 0
Re: [galaxy-user] ENCODEdb
by yizhang＠bx.psu.edu
Hi Laura,
How are you doing? Thanks for letting us know the connection problem between EncodeDB and Galaxy. After some minor fix, EncodeDB should work now. Please let us know, if there are still problems.
Wish you have happy Holidays,
Yi
14 years, 1 month
- 1
- 0
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